Cow genome map


           Conread name:
           LyN1-MLN01F010092
        

               Conread position:
               211-493
               

               Cow position:
               chr1:15103119-15102842 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               193
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               115, 38
               

               Conread position:
               215-629
               

               Cow position:
               chr1:68763451-68763866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 203
               

               Conread position:
               217-663
               

               Cow position:
               chr1:52912662-52913087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 167
               

               Conread position:
               219-467
               

               Cow position:
               chr1:79719033-79718789 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               187
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               82, 15
               

               Conread position:
               219-673
               

               Cow position:
               chr1:54258798-54258339 (view UCSC Genome Browser custom track)
               

               Alignm length:
               472
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 163
               

               Conread position:
               220-461
               

               Cow position:
               chr1:90267949-90267705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               106, 20
               

               Conread position:
               220-629
               

               Cow position:
               chr1:101837278-101836859 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               281
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               81, 26
               

               Conread position:
               223-477
               

               Cow position:
               chr1:81858678-81858936 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               184
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               181, 29
               

               Conread position:
               225-674
               

               Cow position:
               chr1:57263772-57264216 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               313
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               90, 24
               

               Conread position:
               226-411
               

               Cow position:
               chr1:92363449-92363627 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               134
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               226-557
               

               Cow position:
               chr1:3608016-3607694 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               221
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               189, 91
               

               Conread position:
               229-476
               

               Cow position:
               chr1:67654107-67654351 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               189, 44
               

               Conread position:
               230-407
               

               Cow position:
               chr1:102523423-102523601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               131
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               98, 59
               

               Conread position:
               230-630
               

               Cow position:
               chr1:83072658-83072258 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 23
               

               Conread position:
               231-472
               

               Cow position:
               chr1:7453130-7452891 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               90, 152
               

               Conread position:
               233-473
               

               Cow position:
               chr1:4055658-4055425 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               195, 19
               

               Conread position:
               233-673
               

               Cow position:
               chr1:1980896-1981338 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 40
               

               Conread position:
               234-369
               

               Cow position:
               chr1:99221420-99221555 (view UCSC Genome Browser custom track)
               

               Alignm length:
               137
               

               Alignm identity:
               103
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               9, 90
               

               Conread position:
               234-377
               

               Cow position:
               chr1:42592072-42592217 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               111
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               92, 0
               

               Conread position:
               234-379
               

               Cow position:
               chr1:45233195-45233059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               112
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               234-382
               

               Cow position:
               chr1:23101890-23101740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               118
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               15, 97
               

               Conread position:
               234-386
               

               Cow position:
               chr1:70476540-70476690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               114
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               100, 0
               

               Conread position:
               234-387
               

               Cow position:
               chr1:20202513-20202363 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               118
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               62, 47
               

               Conread position:
               234-392
               

               Cow position:
               chr1:80423518-80423677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               128
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               9, 95
               

               Conread position:
               234-412
               

               Cow position:
               chr1:525018-524843 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               126
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               234-412
               

               Cow position:
               chr1:42775119-42774945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               138
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               88, 48
               

               Conread position:
               234-413
               

               Cow position:
               chr1:43296497-43296685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               138
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               234-415
               

               Cow position:
               chr1:71664681-71664865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               84, 98
               

               Conread position:
               234-417
               

               Cow position:
               chr1:60403981-60403796 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               131
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               84, 18
               

               Conread position:
               234-422
               

               Cow position:
               chr1:49297863-49297675 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               134
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               181, 18
               

               Conread position:
               234-422
               

               Cow position:
               chr1:58420410-58420227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               134
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               182, 18
               

               Conread position:
               234-422
               

               Cow position:
               chr1:64458187-64457989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               234-422
               

               Cow position:
               chr1:71636116-71636299 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               144
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               183, 15
               

               Conread position:
               234-425
               

               Cow position:
               chr1:67674396-67674582 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               113, 19
               

               Conread position:
               234-439
               

               Cow position:
               chr1:71945865-71946078 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               159
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               10, 48
               

               Conread position:
               234-444
               

               Cow position:
               chr1:32014406-32014199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               163
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               14, 76
               

               Conread position:
               234-450
               

               Cow position:
               chr1:99604979-99605192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               162
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               184, 39
               

               Conread position:
               234-458
               

               Cow position:
               chr1:96558633-96558863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               160
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               234-461
               

               Cow position:
               chr1:45315417-45315652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               185
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               9, 106
               

               Conread position:
               234-466
               

               Cow position:
               chr1:55753006-55753236 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               184, 85
               

               Conread position:
               234-476
               

               Cow position:
               chr1:48213931-48214186 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               179
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               9, 208
               

               Conread position:
               234-479
               

               Cow position:
               chr1:92524231-92523980 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               177
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               17, 128
               

               Conread position:
               234-481
               

               Cow position:
               chr1:57089466-57089717 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               92, 24
               

               Conread position:
               234-505
               

               Cow position:
               chr1:22035820-22035548 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               194
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               184, 19
               

               Conread position:
               234-539
               

               Cow position:
               chr1:77425324-77425008 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               213
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               41, 19
               

               Conread position:
               234-539
               

               Cow position:
               chr1:82513139-82513450 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               228
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               69, 114
               

               Conread position:
               234-552
               

               Cow position:
               chr1:30189370-30189039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 306
               

               Conread position:
               234-556
               

               Cow position:
               chr1:71350512-71350833 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               228
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               94, 19
               

               Conread position:
               234-572
               

               Cow position:
               chr1:26934056-26934392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               233
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               94, 15
               

               Conread position:
               234-575
               

               Cow position:
               chr1:53452735-53452411 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               239
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               9, 43
               

               Conread position:
               234-588
               

               Cow position:
               chr1:91023254-91023615 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 43
               

               Conread position:
               234-594
               

               Cow position:
               chr1:62519580-62519204 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               263
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               14, 121
               

               Conread position:
               234-594
               

               Cow position:
               chr1:76612919-76613285 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               242
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               94, 237
               

               Conread position:
               234-606
               

               Cow position:
               chr1:38754129-38753752 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               268
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               190, 15
               

               Conread position:
               234-610
               

               Cow position:
               chr1:484250-484635 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               267
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               92, 237
               

               Conread position:
               234-612
               

               Cow position:
               chr1:76740460-76740852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               259
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               73, 18
               

               Conread position:
               234-617
               

               Cow position:
               chr1:90621291-90621687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 63
               

               Conread position:
               234-629
               

               Cow position:
               chr1:86579186-86578764 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 179
               

               Conread position:
               234-644
               

               Cow position:
               chr1:24542357-24542781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               184, 215
               

               Conread position:
               234-650
               

               Cow position:
               chr1:71295091-71295520 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               307
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               180, 40
               

               Conread position:
               234-652
               

               Cow position:
               chr1:75383177-75382784 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 52
               

               Conread position:
               234-669
               

               Cow position:
               chr1:41182048-41181620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               173, 18
               

               Conread position:
               234-670
               

               Cow position:
               chr1:93499833-93499397 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 95
               

               Conread position:
               234-672
               

               Cow position:
               chr1:45019594-45020031 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 18
               

               Conread position:
               234-673
               

               Cow position:
               chr1:41056892-41056456 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 27
               

               Conread position:
               234-673
               

               Cow position:
               chr1:61564994-61564564 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 144
               

               Conread position:
               234-673
               

               Cow position:
               chr1:84811727-84812165 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 103
               

               Conread position:
               234-675
               

               Cow position:
               chr1:23968852-23969267 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               312, 71
               

               Conread position:
               234-675
               

               Cow position:
               chr1:92963590-92963168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               185, 50
               

               Conread position:
               234-676
               

               Cow position:
               chr1:102266058-102266499 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               183, 19
               

               Conread position:
               234-677
               

               Cow position:
               chr1:64803885-64804341 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 18
               

               Conread position:
               235-387
               

               Cow position:
               chr1:83246639-83246485 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               114
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               93, 17
               

               Conread position:
               235-397
               

               Cow position:
               chr1:81615862-81615704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               119
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               235-420
               

               Cow position:
               chr1:45099969-45099787 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               131
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               19, 85
               

               Conread position:
               235-422
               

               Cow position:
               chr1:69411484-69411671 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               138
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               91, 17
               

               Conread position:
               235-425
               

               Cow position:
               chr1:731759-731952 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               144
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               84, 17
               

               Conread position:
               235-426
               

               Cow position:
               chr1:81364475-81364281 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               91, 187
               

               Conread position:
               235-426
               

               Cow position:
               chr1:81473370-81473176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               144
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               91, 123
               

               Conread position:
               235-434
               

               Cow position:
               chr1:89835922-89835731 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               148
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               235-449
               

               Cow position:
               chr1:100852914-100852705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               165
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               179, 39
               

               Conread position:
               235-452
               

               Cow position:
               chr1:85339588-85339386 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               189, 14
               

               Conread position:
               235-466
               

               Cow position:
               chr1:68126979-68127211 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               163
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               74, 14
               

               Conread position:
               235-494
               

               Cow position:
               chr1:81391135-81390867 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               195
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               13, 133
               

               Conread position:
               235-499
               

               Cow position:
               chr1:70175328-70175596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               191
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               8, 83
               

               Conread position:
               235-512
               

               Cow position:
               chr1:52139417-52139700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               195
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               89, 17
               

               Conread position:
               235-521
               

               Cow position:
               chr1:98583959-98583681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               212
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               237, 14
               

               Conread position:
               235-522
               

               Cow position:
               chr1:102754062-102753775 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               213
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               180, 20
               

               Conread position:
               235-572
               

               Cow position:
               chr1:79640076-79640421 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               240
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               9, 94
               

               Conread position:
               235-597
               

               Cow position:
               chr1:22192982-22192607 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               235-600
               

               Cow position:
               chr1:42175940-42175565 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 217
               

               Conread position:
               235-600
               

               Cow position:
               chr1:88913533-88913158 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 159
               

               Conread position:
               235-613
               

               Cow position:
               chr1:101267791-101268176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               269
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               93, 18
               

               Conread position:
               235-644
               

               Cow position:
               chr1:99570287-99570664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               282
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               132, 14
               

               Conread position:
               235-655
               

               Cow position:
               chr1:41289567-41289973 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               268
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               181, 133
               

               Conread position:
               235-665
               

               Cow position:
               chr1:7971616-7971210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               184, 56
               

               Conread position:
               235-667
               

               Cow position:
               chr1:100449979-100450408 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               312
               

               Alignm E-value:
               8.96831e-44
               

               Alignm gaps (pig, cow):
               8, 43
               

               Conread position:
               235-672
               

               Cow position:
               chr1:100324542-100324953 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               301
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               18, 99
               

               Conread position:
               235-673
               

               Cow position:
               chr1:61005344-61005794 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 106
               

               Conread position:
               235-673
               

               Cow position:
               chr1:87888601-87888174 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 17
               

               Conread position:
               235-674
               

               Cow position:
               chr1:21578022-21577575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               305
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               45, 51
               

               Conread position:
               236-392
               

               Cow position:
               chr1:90192631-90192471 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               119
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               74, 117
               

               Conread position:
               236-422
               

               Cow position:
               chr1:102424006-102423817 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               139
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               92, 44
               

               Conread position:
               236-428
               

               Cow position:
               chr1:22828362-22828551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               137
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               236-461
               

               Cow position:
               chr1:242763-242541 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               178
               

               Alignm E-value:
               8.96831e-44
               

               Alignm gaps (pig, cow):
               180, 73
               

               Conread position:
               236-463
               

               Cow position:
               chr1:51860353-51860579 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               166
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               179, 85
               

               Conread position:
               236-465
               

               Cow position:
               chr1:43148328-43148568 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               41, 13
               

               Conread position:
               236-471
               

               Cow position:
               chr1:17056201-17055968 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               162
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               168, 111
               

               Conread position:
               236-471
               

               Cow position:
               chr1:52661965-52662198 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               175
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               59, 37
               

               Conread position:
               236-472
               

               Cow position:
               chr1:77685768-77685999 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               92, 17
               

               Conread position:
               236-513
               

               Cow position:
               chr1:19515405-19515683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               203
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               9, 50
               

               Conread position:
               236-528
               

               Cow position:
               chr1:61846368-61846063 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               216
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               49, 16
               

               Conread position:
               236-528
               

               Cow position:
               chr1:73457884-73458176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               208
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               84, 13
               

               Conread position:
               236-540
               

               Cow position:
               chr1:75250322-75250017 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 14
               

               Conread position:
               236-566
               

               Cow position:
               chr1:35600080-35600423 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               231
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               90, 16
               

               Conread position:
               236-579
               

               Cow position:
               chr1:29452135-29451780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               236
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               11, 125
               

               Conread position:
               236-594
               

               Cow position:
               chr1:87198039-87197674 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 106
               

               Conread position:
               236-613
               

               Cow position:
               chr1:86110533-86110905 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 34
               

               Conread position:
               236-636
               

               Cow position:
               chr1:92369960-92369537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 13
               

               Conread position:
               236-670
               

               Cow position:
               chr1:62964479-62964054 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 200
               

               Conread position:
               236-670
               

               Cow position:
               chr1:64678890-64678472 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               176, 13
               

               Conread position:
               236-671
               

               Cow position:
               chr1:69678113-69678552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 13
               

               Conread position:
               236-673
               

               Cow position:
               chr1:42887070-42887491 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               182, 13
               

               Conread position:
               236-673
               

               Cow position:
               chr1:81568816-81569263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 94
               

               Conread position:
               236-673
               

               Cow position:
               chr1:95101161-95100735 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 13
               

               Conread position:
               237-408
               

               Cow position:
               chr1:51968737-51968576 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               129
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               237-412
               

               Cow position:
               chr1:62469268-62469096 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               130
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               237-451
               

               Cow position:
               chr1:29329756-29329535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               155
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               74, 192
               

               Conread position:
               237-466
               

               Cow position:
               chr1:93590380-93590607 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               165
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               177, 36
               

               Conread position:
               237-482
               

               Cow position:
               chr1:5751525-5751277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               89, 68
               

               Conread position:
               237-521
               

               Cow position:
               chr1:81477653-81477948 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               199
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               88, 203
               

               Conread position:
               237-551
               

               Cow position:
               chr1:102305938-102306250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               224
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               237, 12
               

               Conread position:
               237-598
               

               Cow position:
               chr1:101835025-101834667 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 12
               

               Conread position:
               237-618
               

               Cow position:
               chr1:21561229-21560857 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               264
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               81, 16
               

               Conread position:
               237-652
               

               Cow position:
               chr1:196796-197215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               181, 107
               

               Conread position:
               237-653
               

               Cow position:
               chr1:12464456-12464872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 16
               

               Conread position:
               237-667
               

               Cow position:
               chr1:101714325-101713895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               175, 15
               

               Conread position:
               237-672
               

               Cow position:
               chr1:47658557-47658126 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 15
               

               Conread position:
               237-673
               

               Cow position:
               chr1:81515448-81515011 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 15
               

               Conread position:
               237-674
               

               Cow position:
               chr1:43352443-43352880 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 101
               

               Conread position:
               237-674
               

               Cow position:
               chr1:56477795-56477365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               179, 69
               

               Conread position:
               237-674
               

               Cow position:
               chr1:66138531-66138087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               455
               

               Alignm identity:
               298
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               64, 15
               

               Conread position:
               237-674
               

               Cow position:
               chr1:69539895-69539469 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               186, 82
               

               Conread position:
               238-386
               

               Cow position:
               chr1:33080602-33080751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               120
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               52, 14
               

               Conread position:
               238-417
               

               Cow position:
               chr1:83677117-83677294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               124
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               238-427
               

               Cow position:
               chr1:15875868-15875680 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               238-431
               

               Cow position:
               chr1:95049656-95049851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               78, 38
               

               Conread position:
               238-465
               

               Cow position:
               chr1:20871348-20871579 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               80, 14
               

               Conread position:
               238-469
               

               Cow position:
               chr1:71789940-71790172 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               163
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               80, 11
               

               Conread position:
               238-475
               

               Cow position:
               chr1:1496319-1496558 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               170
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               73, 11
               

               Conread position:
               238-510
               

               Cow position:
               chr1:101507560-101507292 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               210
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               6, 49
               

               Conread position:
               238-521
               

               Cow position:
               chr1:97794341-97794625 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               35, 14
               

               Conread position:
               238-522
               

               Cow position:
               chr1:37726206-37726498 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               204
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               49, 14
               

               Conread position:
               238-522
               

               Cow position:
               chr1:77232363-77232651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               208
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               88, 36
               

               Conread position:
               238-524
               

               Cow position:
               chr1:74751420-74751713 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               205
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               90, 14
               

               Conread position:
               238-535
               

               Cow position:
               chr1:17875505-17875801 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               197
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               165, 14
               

               Conread position:
               238-536
               

               Cow position:
               chr1:186072-186368 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               205
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               40, 96
               

               Conread position:
               238-539
               

               Cow position:
               chr1:42482408-42482109 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               221
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               34, 14
               

               Conread position:
               238-553
               

               Cow position:
               chr1:10716713-10716390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               231
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               69, 11
               

               Conread position:
               238-566
               

               Cow position:
               chr1:5010625-5010965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               223
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               63, 14
               

               Conread position:
               238-567
               

               Cow position:
               chr1:42868742-42869062 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               234
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               246, 14
               

               Conread position:
               238-570
               

               Cow position:
               chr1:47790459-47790791 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               233
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               191, 72
               

               Conread position:
               238-579
               

               Cow position:
               chr1:86340248-86340611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               253
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               17, 186
               

               Conread position:
               238-589
               

               Cow position:
               chr1:71665726-71666075 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               248
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               88, 14
               

               Conread position:
               238-601
               

               Cow position:
               chr1:14205955-14206316 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               262
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               226, 38
               

               Conread position:
               238-617
               

               Cow position:
               chr1:85688393-85688013 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               260
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               69, 14
               

               Conread position:
               238-629
               

               Cow position:
               chr1:74319575-74319969 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               262
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               91, 15
               

               Conread position:
               238-637
               

               Cow position:
               chr1:5858464-5858883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               274
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               75, 17
               

               Conread position:
               238-643
               

               Cow position:
               chr1:70094546-70094139 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               269
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               88, 14
               

               Conread position:
               238-662
               

               Cow position:
               chr1:36998391-36997975 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 45
               

               Conread position:
               238-668
               

               Cow position:
               chr1:49317293-49317736 (view UCSC Genome Browser custom track)
               

               Alignm length:
               455
               

               Alignm identity:
               311
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               175, 11
               

               Conread position:
               238-668
               

               Cow position:
               chr1:74929500-74929943 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               294
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               63, 15
               

               Conread position:
               238-671
               

               Cow position:
               chr1:63390555-63391000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               102, 390
               

               Conread position:
               238-671
               

               Cow position:
               chr1:63434590-63435032 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               97, 11
               

               Conread position:
               238-672
               

               Cow position:
               chr1:68817592-68818025 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               166, 29
               

               Conread position:
               238-673
               

               Cow position:
               chr1:1878231-1877799 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               90, 15
               

               Conread position:
               238-673
               

               Cow position:
               chr1:22729263-22728819 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               180, 27
               

               Conread position:
               238-673
               

               Cow position:
               chr1:31934713-31934285 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               181, 86
               

               Conread position:
               238-673
               

               Cow position:
               chr1:51446090-51445651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               231, 14
               

               Conread position:
               238-673
               

               Cow position:
               chr1:70227483-70227930 (view UCSC Genome Browser custom track)
               

               Alignm length:
               455
               

               Alignm identity:
               298
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               88, 15
               

               Conread position:
               238-674
               

               Cow position:
               chr1:29935182-29935611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               175, 60
               

               Conread position:
               238-674
               

               Cow position:
               chr1:72011613-72012033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               177, 76
               

               Conread position:
               238-674
               

               Cow position:
               chr1:96964528-96964091 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 194
               

               Conread position:
               238-675
               

               Cow position:
               chr1:65103838-65103405 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 143
               

               Conread position:
               238-675
               

               Cow position:
               chr1:72068619-72069057 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 49
               

               Conread position:
               238-676
               

               Cow position:
               chr1:52435484-52435039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 382
               

               Conread position:
               239-385
               

               Cow position:
               chr1:39095693-39095550 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               112
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               239-392
               

               Cow position:
               chr1:99031769-99031924 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               117
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               82, 14
               

               Conread position:
               239-401
               

               Cow position:
               chr1:37470699-37470546 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               126
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               239-411
               

               Cow position:
               chr1:41022624-41022455 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               80, 0
               

               Conread position:
               239-416
               

               Cow position:
               chr1:42797084-42796909 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               130
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               80, 25
               

               Conread position:
               239-417
               

               Cow position:
               chr1:22231859-22231678 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               133
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               79, 115
               

               Conread position:
               239-417
               

               Cow position:
               chr1:82336879-82336708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               128
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               110, 0
               

               Conread position:
               239-421
               

               Cow position:
               chr1:92188167-92187982 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               131
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               77, 92
               

               Conread position:
               239-422
               

               Cow position:
               chr1:1380209-1380021 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               135
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               239-422
               

               Cow position:
               chr1:32217446-32217266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               132
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               173, 85
               

               Conread position:
               239-422
               

               Cow position:
               chr1:87149608-87149791 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               139
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               180, 89
               

               Conread position:
               239-424
               

               Cow position:
               chr1:94712955-94713141 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               134
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               89, 182
               

               Conread position:
               239-427
               

               Cow position:
               chr1:20537410-20537225 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               134
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               179, 85
               

               Conread position:
               239-427
               

               Cow position:
               chr1:54569909-54569718 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               135
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               87, 188
               

               Conread position:
               239-433
               

               Cow position:
               chr1:69442307-69442503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               87, 115
               

               Conread position:
               239-439
               

               Cow position:
               chr1:70483127-70483328 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               175, 98
               

               Conread position:
               239-455
               

               Cow position:
               chr1:95153082-95152861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               87, 199
               

               Conread position:
               239-460
               

               Cow position:
               chr1:92075688-92075474 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               157
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               185, 89
               

               Conread position:
               239-461
               

               Cow position:
               chr1:65639131-65638899 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               79, 108
               

               Conread position:
               239-463
               

               Cow position:
               chr1:852381-852152 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               169
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               89, 114
               

               Conread position:
               239-464
               

               Cow position:
               chr1:9637238-9637010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               61, 46
               

               Conread position:
               239-464
               

               Cow position:
               chr1:76739706-76739928 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               190, 53
               

               Conread position:
               239-466
               

               Cow position:
               chr1:46245528-46245770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               61, 136
               

               Conread position:
               239-468
               

               Cow position:
               chr1:95835587-95835821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               77, 98
               

               Conread position:
               239-501
               

               Cow position:
               chr1:30035432-30035156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               185
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               78, 133
               

               Conread position:
               239-504
               

               Cow position:
               chr1:30862205-30862471 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               188
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               80, 19
               

               Conread position:
               239-509
               

               Cow position:
               chr1:3966036-3965775 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               186
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               239-521
               

               Cow position:
               chr1:22824117-22823827 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               214
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               81, 200
               

               Conread position:
               239-538
               

               Cow position:
               chr1:46031169-46030866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               210
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               89, 37
               

               Conread position:
               239-549
               

               Cow position:
               chr1:4391060-4391386 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               220
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               77, 93
               

               Conread position:
               239-549
               

               Cow position:
               chr1:96019436-96019126 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               210
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               89, 34
               

               Conread position:
               239-565
               

               Cow position:
               chr1:84103850-84104178 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               231
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               71, 237
               

               Conread position:
               239-567
               

               Cow position:
               chr1:66898287-66898624 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               238
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               70, 16
               

               Conread position:
               239-567
               

               Cow position:
               chr1:72105608-72105287 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               235
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               231, 34
               

               Conread position:
               239-570
               

               Cow position:
               chr1:77986208-77986552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               233
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               92, 121
               

               Conread position:
               239-579
               

               Cow position:
               chr1:92996678-92997037 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               251
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               80, 123
               

               Conread position:
               239-590
               

               Cow position:
               chr1:65318785-65318426 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 111
               

               Conread position:
               239-600
               

               Cow position:
               chr1:96304766-96305131 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               261
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               190, 21
               

               Conread position:
               239-600
               

               Cow position:
               chr1:101866291-101866656 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               256
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               19, 53
               

               Conread position:
               239-604
               

               Cow position:
               chr1:78079931-78079563 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               252
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               111, 87
               

               Conread position:
               239-605
               

               Cow position:
               chr1:83659067-83659437 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               242
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               96, 124
               

               Conread position:
               239-610
               

               Cow position:
               chr1:51417973-51417607 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               261
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               20, 73
               

               Conread position:
               239-613
               

               Cow position:
               chr1:55428745-55429128 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 237
               

               Conread position:
               239-630
               

               Cow position:
               chr1:42397988-42398382 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               272
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               135, 98
               

               Conread position:
               239-630
               

               Cow position:
               chr1:61012514-61012124 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               266
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               179, 78
               

               Conread position:
               239-660
               

               Cow position:
               chr1:52496976-52496566 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               298
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               87, 35
               

               Conread position:
               239-663
               

               Cow position:
               chr1:49433054-49433483 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 15
               

               Conread position:
               239-663
               

               Cow position:
               chr1:81228128-81228558 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 30
               

               Conread position:
               239-670
               

               Cow position:
               chr1:87072902-87072479 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 87
               

               Conread position:
               239-671
               

               Cow position:
               chr1:31765162-31765623 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               311
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               99, 124
               

               Conread position:
               239-671
               

               Cow position:
               chr1:54199189-54199609 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 20
               

               Conread position:
               239-672
               

               Cow position:
               chr1:38277818-38278273 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 120
               

               Conread position:
               239-673
               

               Cow position:
               chr1:10941890-10942320 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               179, 85
               

               Conread position:
               239-673
               

               Cow position:
               chr1:10964496-10964066 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               179, 85
               

               Conread position:
               239-673
               

               Cow position:
               chr1:18936629-18937062 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 66
               

               Conread position:
               239-673
               

               Cow position:
               chr1:25383877-25383434 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 193
               

               Conread position:
               239-673
               

               Cow position:
               chr1:44507176-44506740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 88
               

               Conread position:
               239-673
               

               Cow position:
               chr1:51394625-51394191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 10
               

               Conread position:
               239-673
               

               Cow position:
               chr1:55705040-55705482 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               141, 14
               

               Conread position:
               239-673
               

               Cow position:
               chr1:89741788-89742240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 53
               

               Conread position:
               239-674
               

               Cow position:
               chr1:56225674-56225246 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               178, 29
               

               Conread position:
               239-674
               

               Cow position:
               chr1:79844687-79844239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 210
               

               Conread position:
               239-675
               

               Cow position:
               chr1:3429306-3429739 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               297
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               191, 87
               

               Conread position:
               239-675
               

               Cow position:
               chr1:4539211-4539669 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               289
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               87, 124
               

               Conread position:
               239-675
               

               Cow position:
               chr1:10655685-10655247 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               295
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               68, 120
               

               Conread position:
               239-675
               

               Cow position:
               chr1:78092248-78091802 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               302
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               96, 119
               

               Conread position:
               239-675
               

               Cow position:
               chr1:90864083-90864530 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 53
               

               Conread position:
               239-676
               

               Cow position:
               chr1:83982168-83982608 (view UCSC Genome Browser custom track)
               

               Alignm length:
               455
               

               Alignm identity:
               302
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               87, 114
               

               Conread position:
               239-682
               

               Cow position:
               chr1:13810859-13810411 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               289
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               85, 127
               

               Conread position:
               239-684
               

               Cow position:
               chr1:59519119-59518662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               242, 80
               

               Conread position:
               240-394
               

               Cow position:
               chr1:64811444-64811288 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               113
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               240-405
               

               Cow position:
               chr1:30028025-30028190 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               126
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               240-411
               

               Cow position:
               chr1:84787467-84787306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               128
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               240-417
               

               Cow position:
               chr1:39683935-39684114 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               131
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               80, 127
               

               Conread position:
               240-417
               

               Cow position:
               chr1:56913325-56913499 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               129
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               240-421
               

               Cow position:
               chr1:46939670-46939860 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               135
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               240-421
               

               Cow position:
               chr1:69378391-69378574 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               145
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               81, 110
               

               Conread position:
               240-422
               

               Cow position:
               chr1:32035508-32035686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               136
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               175, 9
               

               Conread position:
               240-422
               

               Cow position:
               chr1:90820273-90820451 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               133
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               240-424
               

               Cow position:
               chr1:75227118-75227295 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               240-426
               

               Cow position:
               chr1:13828381-13828568 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               139
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               69, 15
               

               Conread position:
               240-427
               

               Cow position:
               chr1:1605924-1606114 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               138
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               67, 159
               

               Conread position:
               240-427
               

               Cow position:
               chr1:99637044-99637234 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               134
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               86, 182
               

               Conread position:
               240-434
               

               Cow position:
               chr1:56749022-56748826 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               143
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               10, 191
               

               Conread position:
               240-435
               

               Cow position:
               chr1:63461085-63460891 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               179, 184
               

               Conread position:
               240-437
               

               Cow position:
               chr1:50585669-50585871 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               159, 0
               

               Conread position:
               240-442
               

               Cow position:
               chr1:55685771-55685975 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               88, 75
               

               Conread position:
               240-445
               

               Cow position:
               chr1:100573421-100573627 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               174, 88
               

               Conread position:
               240-448
               

               Cow position:
               chr1:95156757-95156967 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               161
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               10, 95
               

               Conread position:
               240-450
               

               Cow position:
               chr1:73551295-73551515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               67, 203
               

               Conread position:
               240-451
               

               Cow position:
               chr1:85772211-85772003 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               154
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               60, 16
               

               Conread position:
               240-455
               

               Cow position:
               chr1:68688786-68688573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               174, 70
               

               Conread position:
               240-465
               

               Cow position:
               chr1:24530705-24530482 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               160
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               174, 79
               

               Conread position:
               240-467
               

               Cow position:
               chr1:66752426-66752651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               176
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               175, 10
               

               Conread position:
               240-469
               

               Cow position:
               chr1:72422200-72422432 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               85, 13
               

               Conread position:
               240-471
               

               Cow position:
               chr1:102648487-102648251 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               172
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               69, 90
               

               Conread position:
               240-490
               

               Cow position:
               chr1:49980915-49980664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               186
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               175, 84
               

               Conread position:
               240-504
               

               Cow position:
               chr1:17317136-17317423 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               202
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               67, 181
               

               Conread position:
               240-505
               

               Cow position:
               chr1:78066336-78066599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               190
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               178, 70
               

               Conread position:
               240-506
               

               Cow position:
               chr1:48618040-48618301 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               197
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               174, 67
               

               Conread position:
               240-510
               

               Cow position:
               chr1:54267731-54267999 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               200
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               18, 89
               

               Conread position:
               240-516
               

               Cow position:
               chr1:92684474-92684763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               211
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               86, 253
               

               Conread position:
               240-520
               

               Cow position:
               chr1:35671743-35671466 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               198
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               211, 85
               

               Conread position:
               240-542
               

               Cow position:
               chr1:628175-627864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               216
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               86, 236
               

               Conread position:
               240-552
               

               Cow position:
               chr1:43855496-43855192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               229
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               240, 72
               

               Conread position:
               240-552
               

               Cow position:
               chr1:90904550-90904861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               217
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               173, 94
               

               Conread position:
               240-553
               

               Cow position:
               chr1:41137940-41138244 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               225
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               7, 81
               

               Conread position:
               240-553
               

               Cow position:
               chr1:56225989-56225681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               225
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               178, 82
               

               Conread position:
               240-553
               

               Cow position:
               chr1:56618449-56618763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               232
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               178, 94
               

               Conread position:
               240-553
               

               Cow position:
               chr1:78794029-78794337 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               175, 77
               

               Conread position:
               240-557
               

               Cow position:
               chr1:67919335-67919018 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               222
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               184, 45
               

               Conread position:
               240-559
               

               Cow position:
               chr1:261257-261597 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               242
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               86, 57
               

               Conread position:
               240-559
               

               Cow position:
               chr1:6394764-6394446 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               215
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               106, 115
               

               Conread position:
               240-571
               

               Cow position:
               chr1:33998956-33998631 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               233
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               239, 69
               

               Conread position:
               240-577
               

               Cow position:
               chr1:101860280-101860625 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               237
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               132, 70
               

               Conread position:
               240-578
               

               Cow position:
               chr1:4243123-4243480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               233
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               67, 114
               

               Conread position:
               240-586
               

               Cow position:
               chr1:20950924-20950576 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 187
               

               Conread position:
               240-594
               

               Cow position:
               chr1:86682361-86682716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               173, 13
               

               Conread position:
               240-594
               

               Cow position:
               chr1:97954276-97954611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               242
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               172, 80
               

               Conread position:
               240-596
               

               Cow position:
               chr1:63530767-63530421 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 186
               

               Conread position:
               240-604
               

               Cow position:
               chr1:27114845-27114504 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               249
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               10, 37
               

               Conread position:
               240-605
               

               Cow position:
               chr1:40192496-40192847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               228, 93
               

               Conread position:
               240-605
               

               Cow position:
               chr1:87095004-87095395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               275
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               86, 301
               

               Conread position:
               240-605
               

               Cow position:
               chr1:95558246-95557872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               253
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               61, 22
               

               Conread position:
               240-606
               

               Cow position:
               chr1:24777777-24778149 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 145
               

               Conread position:
               240-613
               

               Cow position:
               chr1:12425205-12424842 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               248
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               75, 13
               

               Conread position:
               240-614
               

               Cow position:
               chr1:101280530-101280889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               267
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               10, 16
               

               Conread position:
               240-624
               

               Cow position:
               chr1:20667543-20667921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               179, 37
               

               Conread position:
               240-645
               

               Cow position:
               chr1:43340426-43340823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 95
               

               Conread position:
               240-650
               

               Cow position:
               chr1:33330895-33331294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               178, 42
               

               Conread position:
               240-660
               

               Cow position:
               chr1:74955825-74956239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               242, 81
               

               Conread position:
               240-662
               

               Cow position:
               chr1:8287423-8287831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 112
               

               Conread position:
               240-663
               

               Cow position:
               chr1:14379343-14379748 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               278
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               298, 110
               

               Conread position:
               240-667
               

               Cow position:
               chr1:34771292-34771726 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 33
               

               Conread position:
               240-667
               

               Cow position:
               chr1:53623163-53622742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 101
               

               Conread position:
               240-670
               

               Cow position:
               chr1:15334096-15333655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 88
               

               Conread position:
               240-670
               

               Cow position:
               chr1:68855374-68854949 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 196
               

               Conread position:
               240-671
               

               Cow position:
               chr1:8826-8396 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 248
               

               Conread position:
               240-671
               

               Cow position:
               chr1:91065950-91066375 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               175, 70
               

               Conread position:
               240-671
               

               Cow position:
               chr1:92197661-92197234 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 33
               

               Conread position:
               240-672
               

               Cow position:
               chr1:14980931-14981346 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               287
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               179, 45
               

               Conread position:
               240-672
               

               Cow position:
               chr1:48443984-48444410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 126
               

               Conread position:
               240-673
               

               Cow position:
               chr1:1956131-1956557 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 35
               

               Conread position:
               240-673
               

               Cow position:
               chr1:2075143-2075556 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               294
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               86, 110
               

               Conread position:
               240-673
               

               Cow position:
               chr1:19466243-19465834 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               296
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               179, 55
               

               Conread position:
               240-673
               

               Cow position:
               chr1:21787531-21787098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               175, 45
               

               Conread position:
               240-673
               

               Cow position:
               chr1:22730940-22730533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               178, 95
               

               Conread position:
               240-673
               

               Cow position:
               chr1:29626704-29627143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 15
               

               Conread position:
               240-673
               

               Cow position:
               chr1:34686373-34685967 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 28
               

               Conread position:
               240-673
               

               Cow position:
               chr1:37706762-37707197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 33
               

               Conread position:
               240-673
               

               Cow position:
               chr1:46693444-46693884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               290
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               93, 122
               

               Conread position:
               240-673
               

               Cow position:
               chr1:48105218-48105662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 166
               

               Conread position:
               240-673
               

               Cow position:
               chr1:54478523-54478096 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               178, 66
               

               Conread position:
               240-673
               

               Cow position:
               chr1:70435192-70434765 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               179, 13
               

               Conread position:
               240-673
               

               Cow position:
               chr1:73960892-73960473 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               178, 13
               

               Conread position:
               240-673
               

               Cow position:
               chr1:79164875-79165319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 103
               

               Conread position:
               240-674
               

               Cow position:
               chr1:6304670-6305098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               184, 66
               

               Conread position:
               240-674
               

               Cow position:
               chr1:10778761-10778344 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               178, 36
               

               Conread position:
               240-674
               

               Cow position:
               chr1:33720311-33719884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 92
               

               Conread position:
               240-674
               

               Cow position:
               chr1:39426810-39427211 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               174, 55
               

               Conread position:
               240-674
               

               Cow position:
               chr1:57575557-57575997 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               172, 191
               

               Conread position:
               240-674
               

               Cow position:
               chr1:61391589-61392021 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               228, 18
               

               Conread position:
               240-674
               

               Cow position:
               chr1:68826717-68827135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               244, 37
               

               Conread position:
               240-674
               

               Cow position:
               chr1:99609574-99609136 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               193, 88
               

               Conread position:
               240-675
               

               Cow position:
               chr1:6166439-6166020 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               227, 90
               

               Conread position:
               240-675
               

               Cow position:
               chr1:21954021-21954448 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               189, 14
               

               Conread position:
               240-675
               

               Cow position:
               chr1:37321803-37322235 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               240, 49
               

               Conread position:
               240-675
               

               Cow position:
               chr1:69694800-69695239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               455
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               179, 34
               

               Conread position:
               240-675
               

               Cow position:
               chr1:79591310-79590870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               299
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               85, 13
               

               Conread position:
               240-675
               

               Cow position:
               chr1:95177125-95176705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               179, 46
               

               Conread position:
               240-682
               

               Cow position:
               chr1:64302043-64302471 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               152, 35
               

               Conread position:
               240-686
               

               Cow position:
               chr1:75745067-75744618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               96, 29
               

               Conread position:
               240-689
               

               Cow position:
               chr1:3923597-3924039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               178, 70
               

               Conread position:
               240-750
               

               Cow position:
               chr1:76470864-76470354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               527
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 201
               

               Conread position:
               241-412
               

               Cow position:
               chr1:46354234-46354404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               127
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               241-417
               

               Cow position:
               chr1:100800563-100800739 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               130
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               155, 77
               

               Conread position:
               241-426
               

               Cow position:
               chr1:25021872-25022057 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               136
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               177, 83
               

               Conread position:
               241-427
               

               Cow position:
               chr1:40303753-40303571 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               138
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               176, 11
               

               Conread position:
               241-427
               

               Cow position:
               chr1:98556912-98557099 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               140
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               88, 183
               

               Conread position:
               241-434
               

               Cow position:
               chr1:5872568-5872768 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               144
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               241-439
               

               Cow position:
               chr1:79178838-79178635 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               147
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               6, 0
               

               Conread position:
               241-462
               

               Cow position:
               chr1:73719677-73719444 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               165
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               241-467
               

               Cow position:
               chr1:96272811-96273044 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               159
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               76, 200
               

               Conread position:
               241-467
               

               Cow position:
               chr1:101177729-101177493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               170
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               17, 141
               

               Conread position:
               241-477
               

               Cow position:
               chr1:82538133-82537898 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               170
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               133, 87
               

               Conread position:
               241-505
               

               Cow position:
               chr1:62235250-62235508 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               192
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               45, 70
               

               Conread position:
               241-528
               

               Cow position:
               chr1:49824860-49825152 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               214
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               172, 8
               

               Conread position:
               241-574
               

               Cow position:
               chr1:78838993-78838665 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               173, 71
               

               Conread position:
               241-585
               

               Cow position:
               chr1:8128773-8129111 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               177, 35
               

               Conread position:
               241-590
               

               Cow position:
               chr1:22526080-22525730 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               174, 69
               

               Conread position:
               241-598
               

               Cow position:
               chr1:64572720-64572356 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               177, 93
               

               Conread position:
               241-630
               

               Cow position:
               chr1:76037306-76037691 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               258
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               85, 114
               

               Conread position:
               241-633
               

               Cow position:
               chr1:54156528-54156929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 156
               

               Conread position:
               241-645
               

               Cow position:
               chr1:5597007-5597399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 9
               

               Conread position:
               241-649
               

               Cow position:
               chr1:68863225-68862831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               226, 44
               

               Conread position:
               241-652
               

               Cow position:
               chr1:21955166-21955581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               284
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               85, 111
               

               Conread position:
               241-663
               

               Cow position:
               chr1:16961788-16962232 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               301
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               82, 210
               

               Conread position:
               241-670
               

               Cow position:
               chr1:54206613-54207045 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               177, 89
               

               Conread position:
               241-671
               

               Cow position:
               chr1:41697260-41696828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 82
               

               Conread position:
               241-672
               

               Cow position:
               chr1:31347727-31348137 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               296
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               7, 85
               

               Conread position:
               241-672
               

               Cow position:
               chr1:85029141-85028733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 11
               

               Conread position:
               241-673
               

               Cow position:
               chr1:12222398-12222833 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 119
               

               Conread position:
               241-673
               

               Cow position:
               chr1:50930774-50931197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               177, 92
               

               Conread position:
               241-673
               

               Cow position:
               chr1:61885117-61884687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               172, 9
               

               Conread position:
               241-673
               

               Cow position:
               chr1:71119727-71119283 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 108
               

               Conread position:
               241-673
               

               Cow position:
               chr1:81290710-81290290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               177, 45
               

               Conread position:
               241-673
               

               Cow position:
               chr1:84283276-84282833 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               304
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               85, 12
               

               Conread position:
               241-673
               

               Cow position:
               chr1:94226339-94226776 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 8
               

               Conread position:
               241-673
               

               Cow position:
               chr1:96365855-96365447 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               301
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               164, 33
               

               Conread position:
               241-673
               

               Cow position:
               chr1:100552172-100551742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               166, 77
               

               Conread position:
               241-674
               

               Cow position:
               chr1:24132857-24133285 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 88
               

               Conread position:
               241-674
               

               Cow position:
               chr1:77462545-77462135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               240, 36
               

               Conread position:
               241-675
               

               Cow position:
               chr1:874870-874413 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 98
               

               Conread position:
               241-675
               

               Cow position:
               chr1:77620756-77620320 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 109
               

               Conread position:
               242-409
               

               Cow position:
               chr1:10470627-10470464 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               121
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               78, 0
               

               Conread position:
               242-409
               

               Cow position:
               chr1:77810558-77810721 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               124
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               242-415
               

               Cow position:
               chr1:53474353-53474189 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               134
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               242-419
               

               Cow position:
               chr1:53457017-53456837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               132
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               37, 147
               

               Conread position:
               242-422
               

               Cow position:
               chr1:19599155-19599335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               131
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               86, 72
               

               Conread position:
               242-422
               

               Cow position:
               chr1:84595096-84594912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               137
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               74, 96
               

               Conread position:
               242-423
               

               Cow position:
               chr1:98742221-98742047 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               130
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               86, 0
               

               Conread position:
               242-426
               

               Cow position:
               chr1:63994350-63994534 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               133
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               182, 177
               

               Conread position:
               242-447
               

               Cow position:
               chr1:7966052-7965851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               149
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               87, 171
               

               Conread position:
               242-454
               

               Cow position:
               chr1:40212143-40212341 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               152
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               37, 79
               

               Conread position:
               242-458
               

               Cow position:
               chr1:6790979-6790762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               161
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               76, 90
               

               Conread position:
               242-464
               

               Cow position:
               chr1:79630714-79630921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               16, 45
               

               Conread position:
               242-468
               

               Cow position:
               chr1:6731384-6731158 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               175, 86
               

               Conread position:
               242-468
               

               Cow position:
               chr1:36688175-36688401 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               86, 34
               

               Conread position:
               242-469
               

               Cow position:
               chr1:100823245-100823013 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               165
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               86, 184
               

               Conread position:
               242-470
               

               Cow position:
               chr1:38706648-38706879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               168
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               86, 36
               

               Conread position:
               242-471
               

               Cow position:
               chr1:27959342-27959576 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               164
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               68, 52
               

               Conread position:
               242-477
               

               Cow position:
               chr1:3942011-3942247 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               166
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               24, 96
               

               Conread position:
               242-478
               

               Cow position:
               chr1:98912213-98911976 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               175
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               61, 173
               

               Conread position:
               242-481
               

               Cow position:
               chr1:77739929-77739684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               86, 109
               

               Conread position:
               242-494
               

               Cow position:
               chr1:95828930-95829168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               178
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               74, 31
               

               Conread position:
               242-508
               

               Cow position:
               chr1:80584632-80584367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               191
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               60, 7
               

               Conread position:
               242-527
               

               Cow position:
               chr1:3815476-3815772 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               211
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               76, 50
               

               Conread position:
               242-547
               

               Cow position:
               chr1:100575836-100576141 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               219
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               225, 68
               

               Conread position:
               242-559
               

               Cow position:
               chr1:20104471-20104150 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               231
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               176, 193
               

               Conread position:
               242-596
               

               Cow position:
               chr1:90975871-90976242 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               260
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               75, 118
               

               Conread position:
               242-613
               

               Cow position:
               chr1:16060803-16061192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               172, 77
               

               Conread position:
               242-627
               

               Cow position:
               chr1:89388548-89388149 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               171, 91
               

               Conread position:
               242-667
               

               Cow position:
               chr1:7443187-7442763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 113
               

               Conread position:
               242-671
               

               Cow position:
               chr1:27145440-27145880 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 7
               

               Conread position:
               242-671
               

               Cow position:
               chr1:32341010-32341434 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               285
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               67, 80
               

               Conread position:
               242-671
               

               Cow position:
               chr1:74083983-74084418 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 175
               

               Conread position:
               242-673
               

               Cow position:
               chr1:3324079-3323630 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 116
               

               Conread position:
               242-673
               

               Cow position:
               chr1:6102695-6103141 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               291
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               84, 112
               

               Conread position:
               242-673
               

               Cow position:
               chr1:19481895-19482301 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               172, 34
               

               Conread position:
               242-673
               

               Cow position:
               chr1:43505729-43505295 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               170, 68
               

               Conread position:
               242-673
               

               Cow position:
               chr1:53370289-53369838 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 34
               

               Conread position:
               242-673
               

               Cow position:
               chr1:72304197-72304599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               295
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               176, 32
               

               Conread position:
               242-674
               

               Cow position:
               chr1:35162610-35162174 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               172, 43
               

               Conread position:
               242-674
               

               Cow position:
               chr1:78857121-78857552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 196
               

               Conread position:
               242-674
               

               Cow position:
               chr1:89509726-89510162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               171, 13
               

               Conread position:
               242-675
               

               Cow position:
               chr1:70538810-70538373 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 8
               

               Conread position:
               242-675
               

               Cow position:
               chr1:82936400-82936812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               176, 25
               

               Conread position:
               243-410
               

               Cow position:
               chr1:19384253-19384419 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               124
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               91, 0
               

               Conread position:
               243-455
               

               Cow position:
               chr1:8788494-8788281 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               153
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               64, 30
               

               Conread position:
               243-528
               

               Cow position:
               chr1:42541795-42541514 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               213
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               171, 26
               

               Conread position:
               243-535
               

               Cow position:
               chr1:91651143-91651450 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               203
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               9, 112
               

               Conread position:
               243-596
               

               Cow position:
               chr1:97232175-97231800 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               269
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               83, 31
               

               Conread position:
               243-672
               

               Cow position:
               chr1:42256301-42256737 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               289
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               173, 33
               

               Conread position:
               243-673
               

               Cow position:
               chr1:61741760-61742195 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 28
               

               Conread position:
               244-579
               

               Cow position:
               chr1:39224736-39225063 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               243
               

               Alignm E-value:
               8.96831e-44
               

               Alignm gaps (pig, cow):
               164, 66
               

               Conread position:
               244-601
               

               Cow position:
               chr1:14308827-14309198 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               249
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               89, 8
               

               Conread position:
               245-405
               

               Cow position:
               chr1:25956098-25955937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               117
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               84, 0
               

               Conread position:
               245-456
               

               Cow position:
               chr1:759210-759429 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               168
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               34, 196
               

               Conread position:
               245-465
               

               Cow position:
               chr1:63079203-63078990 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               170, 29
               

               Conread position:
               245-469
               

               Cow position:
               chr1:20125997-20125774 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               70, 123
               

               Conread position:
               245-474
               

               Cow position:
               chr1:41027274-41027046 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               183
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               169, 75
               

               Conread position:
               245-487
               

               Cow position:
               chr1:73721566-73721318 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               191
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               81, 102
               

               Conread position:
               245-489
               

               Cow position:
               chr1:2462573-2462339 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               245-530
               

               Cow position:
               chr1:30983290-30983576 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               211
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               90, 175
               

               Conread position:
               245-579
               

               Cow position:
               chr1:89449100-89448759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               169, 41
               

               Conread position:
               245-645
               

               Cow position:
               chr1:28563359-28563769 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 179
               

               Conread position:
               245-668
               

               Cow position:
               chr1:82880833-82880442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               173, 40
               

               Conread position:
               245-669
               

               Cow position:
               chr1:43872107-43872555 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 158
               

               Conread position:
               245-671
               

               Cow position:
               chr1:68844954-68845385 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               299
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               29, 206
               

               Conread position:
               245-672
               

               Cow position:
               chr1:45555567-45555133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 34
               

               Conread position:
               245-673
               

               Cow position:
               chr1:84238918-84239335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 150
               

               Conread position:
               245-674
               

               Cow position:
               chr1:71045937-71045525 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               171, 40
               

               Conread position:
               246-453
               

               Cow position:
               chr1:97540840-97540627 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               150
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               61, 109
               

               Conread position:
               246-474
               

               Cow position:
               chr1:98897489-98897723 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               169
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               74, 25
               

               Conread position:
               246-512
               

               Cow position:
               chr1:46143266-46143530 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               192
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               33, 75
               

               Conread position:
               246-537
               

               Cow position:
               chr1:100474440-100474139 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 93
               

               Conread position:
               246-539
               

               Cow position:
               chr1:22943827-22944120 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               204
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               92, 70
               

               Conread position:
               246-539
               

               Cow position:
               chr1:27463329-27463037 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               203
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               215, 41
               

               Conread position:
               246-630
               

               Cow position:
               chr1:25735069-25734668 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               271
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               52, 156
               

               Conread position:
               246-671
               

               Cow position:
               chr1:102785147-102784734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 65
               

               Conread position:
               246-673
               

               Cow position:
               chr1:16766885-16767313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 171
               

               Conread position:
               246-673
               

               Cow position:
               chr1:23488302-23488741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               285
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               80, 102
               

               Conread position:
               249-422
               

               Cow position:
               chr1:11708826-11708994 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               132
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               169, 59
               

               Conread position:
               249-422
               

               Cow position:
               chr1:29671022-29671200 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               133
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               76, 24
               

               Conread position:
               249-473
               

               Cow position:
               chr1:67529254-67529027 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               77, 57
               

               Conread position:
               249-473
               

               Cow position:
               chr1:81481187-81481410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               178
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               169, 71
               

               Conread position:
               249-492
               

               Cow position:
               chr1:500374-500125 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               188
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               58, 86
               

               Conread position:
               249-505
               

               Cow position:
               chr1:79004174-79003913 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               194
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               79, 123
               

               Conread position:
               249-575
               

               Cow position:
               chr1:5023538-5023890 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               254
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               63, 212
               

               Conread position:
               249-636
               

               Cow position:
               chr1:33206676-33207066 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 182
               

               Conread position:
               249-667
               

               Cow position:
               chr1:96472613-96472207 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               301
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               273, 36
               

               Conread position:
               249-673
               

               Cow position:
               chr1:100422018-100421615 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               296
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               65, 27
               

               Conread position:
               250-461
               

               Cow position:
               chr1:6381973-6381756 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               164
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               59, 122
               

               Conread position:
               250-470
               

               Cow position:
               chr1:95618838-95618616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               169
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               50, 35
               

               Conread position:
               250-510
               

               Cow position:
               chr1:95072540-95072264 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               199
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               63, 200
               

               Conread position:
               250-673
               

               Cow position:
               chr1:3962479-3962912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               315
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               55, 255
               

               Conread position:
               250-673
               

               Cow position:
               chr1:55357092-55357514 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 180
               

               Conread position:
               250-674
               

               Cow position:
               chr1:15547662-15547239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               173, 60
               

               Conread position:
               251-387
               

               Cow position:
               chr1:67743542-67743676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               137
               

               Alignm identity:
               102
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               251-432
               

               Cow position:
               chr1:70416564-70416748 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               141
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               164, 0
               

               Conread position:
               251-453
               

               Cow position:
               chr1:102730561-102730771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               64, 88
               

               Conread position:
               251-597
               

               Cow position:
               chr1:33409427-33409784 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               241
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               82, 109
               

               Conread position:
               251-636
               

               Cow position:
               chr1:71228291-71227885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               279
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               79, 156
               

               Conread position:
               251-673
               

               Cow position:
               chr1:26895616-26896053 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               178, 82
               

               Conread position:
               252-460
               

               Cow position:
               chr1:61011370-61011166 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               161
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               163, 60
               

               Conread position:
               252-568
               

               Cow position:
               chr1:98060254-98059923 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               225
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               162, 68
               

               Conread position:
               253-422
               

               Cow position:
               chr1:91743269-91743437 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               119
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               253-423
               

               Cow position:
               chr1:76518619-76518445 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               131
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               47, 32
               
253-501UCSC Genome Browser

               Conread position:
               
               

               Cow position:
               chr1:31357320-31357568 (view  custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               172
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               163, 20
               
253-552UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:chr1:47886286-47886592 (view  custom track)

               
               
               
Alignm length:311

               
               
               
Alignm identity:228

               
               
               
Alignm E-value:0

               
               
               
Alignm gaps (pig, cow):63, 76
253-567UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:chr1:95638029-95637703 (view  custom track)

               
               
               
Alignm length:328

               
               
               
Alignm identity:209

               
               
               
Alignm E-value:2e-21

               
               
               
Alignm gaps (pig, cow):84, 110

               
               
               Conread position:253-653
               
               
               Cow position:chr1:49082940-49082514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:289
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):66, 84

               
               
               Conread position:253-674
               
               
               Cow position:chr1:23633733-23634130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:298
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):70, 79

               
               
               Conread position:253-675
               
               
               Cow position:chr1:60987186-60986741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:293
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):63, 368

               
               
               Conread position:254-387
               
               
               Cow position:chr1:1799225-1799090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:254-427
               
               
               Cow position:chr1:78793810-78793983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):135, 63

               
               
               Conread position:254-431
               
               
               Cow position:chr1:63905071-63905242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):161, 55

               
               
               Conread position:254-467
               
               
               Cow position:chr1:62034642-62034850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):159, 37

               
               
               Conread position:254-475
               
               
               Cow position:chr1:83093056-83092845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:254-504
               
               
               Cow position:chr1:64113607-64113854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):111, 53

               
               
               Conread position:254-515
               
               
               Cow position:chr1:2972113-2971840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:254-528
               
               
               Cow position:chr1:45223769-45223495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):164, 66

               
               
               Conread position:254-538
               
               
               Cow position:chr1:72813810-72813521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):72, 30

               
               
               Conread position:254-639
               
               
               Cow position:chr1:24581759-24581388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:276
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):163, 20

               
               
               Conread position:254-669
               
               
               Cow position:chr1:100741475-100741068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:277
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):53, 168

               
               
               Conread position:254-670
               
               
               Cow position:chr1:102756242-102756645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:279
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):165, 53

               
               
               Conread position:254-672
               
               
               Cow position:chr1:6941659-6941238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 67

               
               
               Conread position:254-673
               
               
               Cow position:chr1:34856432-34856857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 184

               
               
               Conread position:254-673
               
               
               Cow position:chr1:77720067-77720460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):276, 53

               
               
               Conread position:254-675
               
               
               Cow position:chr1:56229429-56229024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:277
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):87, 32

               
               
               Conread position:254-693
               
               
               Cow position:chr1:6078093-6077645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 169

               
               
               Conread position:254-697
               
               
               Cow position:chr1:78810073-78809632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 25

               
               
               Conread position:257-455
               
               
               Cow position:chr1:22461049-22461248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):90, 76

               
               
               Conread position:257-467
               
               
               Cow position:chr1:83024975-83025186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):100, 76

               
               
               Conread position:257-520
               
               
               Cow position:chr1:53402974-53402706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:257-539
               
               
               Cow position:chr1:69551289-69551578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):56, 89

               
               
               Conread position:257-581
               
               
               Cow position:chr1:97090507-97090187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):155, 10

               
               
               Conread position:257-586
               
               
               Cow position:chr1:6228391-6228730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):31, 97

               
               
               Conread position:257-595
               
               
               Cow position:chr1:17196435-17196783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 180

               
               
               Conread position:257-599
               
               
               Cow position:chr1:98413966-98413608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):69, 16

               
               
               Conread position:257-666
               
               
               Cow position:chr1:98031105-98030693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 16

               
               
               Conread position:257-672
               
               
               Cow position:chr1:43388864-43389275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 48

               
               
               Conread position:257-673
               
               
               Cow position:chr1:21093309-21092863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:295
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):65, 103

               
               
               Conread position:257-673
               
               
               Cow position:chr1:89381464-89381050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 80

               
               
               Conread position:257-674
               
               
               Cow position:chr1:95499306-95499725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 178

               
               
               Conread position:257-675
               
               
               Cow position:chr1:86113206-86113644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 99

               
               
               Conread position:258-469
               
               
               Cow position:chr1:31256041-31256245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):42, 30

               
               
               Conread position:258-601
               
               
               Cow position:chr1:78097115-78096776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:244
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):156, 75

               
               
               Conread position:258-605
               
               
               Cow position:chr1:2975800-2976169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:255
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):59, 195

               
               
               Conread position:258-668
               
               
               Cow position:chr1:68845317-68845709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):222, 64

               
               
               Conread position:258-673
               
               
               Cow position:chr1:93528883-93528462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 49

               
               
               Conread position:259-417
               
               
               Cow position:chr1:23373049-23372889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:259-517
               
               
               Cow position:chr1:89157942-89158202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):158, 27

               
               
               Conread position:259-666
               
               
               Cow position:chr1:11729359-11728956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 45

               
               
               Conread position:259-673
               
               
               Cow position:chr1:102349571-102349986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 26

               
               
               Conread position:260-431
               
               
               Cow position:chr1:69691525-69691700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:260-672
               
               
               Cow position:chr1:6959066-6958651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 61

               
               
               Conread position:261-421
               
               
               Cow position:chr1:1802356-1802192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:261-459
               
               
               Cow position:chr1:6031814-6031610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:261-500
               
               
               Cow position:chr1:62997987-62997744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):67, 159

               
               
               Conread position:261-670
               
               
               Cow position:chr1:71078776-71079182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 72

               
               
               Conread position:261-673
               
               
               Cow position:chr1:24597839-24597424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:296
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):70, 24

               
               
               Conread position:261-675
               
               
               Cow position:chr1:91816582-91817004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 102

               
               
               Conread position:262-550
               
               
               Cow position:chr1:648513-648220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):88, 264

               
               
               Conread position:262-579
               
               
               Cow position:chr1:43311583-43311913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:239
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):57, 71

               
               
               Conread position:262-663
               
               
               Cow position:chr1:13547795-13548208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:286
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):142, 57

               
               
               Conread position:262-673
               
               
               Cow position:chr1:99642184-99642598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 157

               
               
               Conread position:265-673
               
               
               Cow position:chr1:53398155-53397759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 55

               
               
               Conread position:267-610
               
               
               Cow position:chr1:19569035-19568684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:236
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):40, 162

               
               
               Conread position:269-687
               
               
               Cow position:chr1:13637487-13637913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 67

               
               
               Conread position:272-591
               
               
               Cow position:chr1:31272275-31272591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 35

               
               
               Conread position:273-605
               
               
               Cow position:chr1:96276879-96277219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:238
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):105, 37

               
               
               Conread position:273-675
               
               
               Cow position:chr1:31348261-31348671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 87

               
               
               Conread position:276-613
               
               
               Cow position:chr1:76019526-76019864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 106

               
               
               Conread position:277-422
               
               
               Cow position:chr1:73494421-73494572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:277-663
               
               
               Cow position:chr1:48581300-48580913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:273
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):51, 74

               
               
               Conread position:279-673
               
               
               Cow position:chr1:24534093-24534471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 29

               
               
               Conread position:280-596
               
               
               Cow position:chr1:91811949-91811631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 142

               
               
               Conread position:281-538
               
               
               Cow position:chr1:51044139-51044399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):9, 90

               
               
               Conread position:281-674
               
               
               Cow position:chr1:11913708-11914107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 80

               
               
               Conread position:284-674
               
               
               Cow position:chr1:52039796-52039407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 36

               
               
               Conread position:286-605
               
               
               Cow position:chr1:101632177-101632503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 29

               
               
               Conread position:286-640
               
               
               Cow position:chr1:39509893-39510245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 153

               
               
               Conread position:286-675
               
               
               Cow position:chr1:57900563-57900971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 49

               
               
               Conread position:287-448
               
               
               Cow position:chr1:83783770-83783933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:289-594
               
               
               Cow position:chr1:53458858-53458543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 130

               
               
               Conread position:291-468
               
               
               Cow position:chr1:9143875-9143699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):18, 6

               
               
               Conread position:291-673
               
               
               Cow position:chr1:40530945-40531337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:273
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):33, 138

               
               
               Conread position:292-582
               
               
               Cow position:chr1:86073748-86073453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:292-633
               
               
               Cow position:chr1:32001167-32001509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):187, 35

               
               
               Conread position:293-470
               
               
               Cow position:chr1:71915966-71916144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):7, 41

               
               
               Conread position:297-610
               
               
               Cow position:chr1:67305093-67305410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):29, 7

               
               
               Conread position:298-477
               
               
               Cow position:chr1:28470982-28470794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):9, 148

               
               
               Conread position:298-536
               
               
               Cow position:chr1:50992083-50991843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:182
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):11, 138

               
               
               Conread position:298-541
               
               
               Cow position:chr1:71796167-71796410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):50, 22

               
               
               Conread position:298-673
               
               
               Cow position:chr1:81613538-81613157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 36

               
               
               Conread position:299-673
               
               
               Cow position:chr1:74822602-74822223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 138

               
               
               Conread position:300-438
               
               
               Cow position:chr1:84288550-84288409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:300-461
               
               
               Cow position:chr1:56711454-56711615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):36, 11

               
               
               Conread position:300-528
               
               
               Cow position:chr1:80841794-80841570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):30, 136

               
               
               Conread position:301-591
               
               
               Cow position:chr1:70312651-70312955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:222
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):107, 20

               
               
               Conread position:301-666
               
               
               Cow position:chr1:93044160-93043804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 23

               
               
               Conread position:302-463
               
               
               Cow position:chr1:74081835-74081999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):14, 134

               
               
               Conread position:302-466
               
               
               Cow position:chr1:43311885-43312052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):10, 15

               
               
               Conread position:302-597
               
               
               Cow position:chr1:42545631-42545940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):11, 226

               
               
               Conread position:302-673
               
               
               Cow position:chr1:28177147-28176771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 13

               
               
               Conread position:302-673
               
               
               Cow position:chr1:46218716-46218355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:255
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):114, 21

               
               
               Conread position:302-674
               
               
               Cow position:chr1:42555411-42555040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:273
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):14, 37

               
               
               Conread position:303-675
               
               
               Cow position:chr1:89341837-89342223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 30

               
               
               Conread position:304-613
               
               
               Cow position:chr1:74928024-74927709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):111, 20

               
               
               Conread position:305-666
               
               
               Cow position:chr1:52956396-52956038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:260
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):15, 77

               
               
               Conread position:306-468
               
               
               Cow position:chr1:81808998-81809161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):7, 19

               
               
               Conread position:307-673
               
               
               Cow position:chr1:39068817-39069179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 26

               
               
               Conread position:308-526
               
               
               Cow position:chr1:98512064-98511848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:173
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):110, 25

               
               
               Conread position:308-535
               
               
               Cow position:chr1:78697633-78697859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):13, 26

               
               
               Conread position:308-665
               
               
               Cow position:chr1:98461426-98461070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 128

               
               
               Conread position:309-539
               
               
               Cow position:chr1:30417911-30418132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):158, 24

               
               
               Conread position:309-665
               
               
               Cow position:chr1:84255906-84255534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 26

               
               
               Conread position:310-466
               
               
               Cow position:chr1:8670910-8670752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):105, 125

               
               
               Conread position:310-475
               
               
               Cow position:chr1:95974535-95974371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):109, 17

               
               
               Conread position:310-505
               
               
               Cow position:chr1:76657931-76658140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):108, 27

               
               
               Conread position:310-522
               
               
               Cow position:chr1:68672466-68672677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):109, 23

               
               
               Conread position:310-528
               
               
               Cow position:chr1:95153358-95153137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):109, 23

               
               
               Conread position:310-529
               
               
               Cow position:chr1:8347259-8347039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):108, 23

               
               
               Conread position:310-551
               
               
               Cow position:chr1:81580313-81580066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):104, 23

               
               
               Conread position:310-567
               
               
               Cow position:chr1:26615939-26616197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):106, 26

               
               
               Conread position:310-577
               
               
               Cow position:chr1:41047166-41047436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):104, 43

               
               
               Conread position:310-592
               
               
               Cow position:chr1:65909648-65909375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):19, 35

               
               
               Conread position:310-594
               
               
               Cow position:chr1:41115583-41115868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:211
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:310-601
               
               
               Cow position:chr1:97939093-97938809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):229, 23

               
               
               Conread position:310-604
               
               
               Cow position:chr1:93554972-93554680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 23

               
               
               Conread position:310-605
               
               
               Cow position:chr1:77880597-77880895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:226
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):160, 103

               
               
               Conread position:310-670
               
               
               Cow position:chr1:90868311-90868661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 23

               
               
               Conread position:310-671
               
               
               Cow position:chr1:47233342-47233701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 23

               
               
               Conread position:310-673
               
               
               Cow position:chr1:37886676-37887015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:254
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):154, 23

               
               
               Conread position:310-673
               
               
               Cow position:chr1:68253735-68253363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 130

               
               
               Conread position:310-673
               
               
               Cow position:chr1:83748079-83747712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:256
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):109, 93

               
               
               Conread position:310-673
               
               
               Cow position:chr1:85162409-85162776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 227

               
               
               Conread position:310-675
               
               
               Cow position:chr1:4032768-4032404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 23

               
               
               Conread position:310-675
               
               
               Cow position:chr1:48730695-48731058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 109

               
               
               Conread position:310-703
               
               
               Cow position:chr1:98551855-98551455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 23

               
               
               Conread position:311-463
               
               
               Cow position:chr1:45478728-45478877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:311-503
               
               
               Cow position:chr1:99221221-99221413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):171, 22

               
               
               Conread position:311-513
               
               
               Cow position:chr1:78067935-78068133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):113, 22

               
               
               Conread position:311-579
               
               
               Cow position:chr1:85549941-85550216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 131

               
               
               Conread position:311-592
               
               
               Cow position:chr1:18780194-18780485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):101, 22

               
               
               Conread position:311-673
               
               
               Cow position:chr1:71253421-71253783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 22

               
               
               Conread position:311-674
               
               
               Cow position:chr1:57297626-57297262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:272
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):14, 34

               
               
               Conread position:311-684
               
               
               Cow position:chr1:7657178-7657554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:240
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):160, 65

               
               
               Conread position:312-490
               
               
               Cow position:chr1:69481816-69481997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):101, 21

               
               
               Conread position:312-627
               
               
               Cow position:chr1:91874783-91875091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 21

               
               
               Conread position:312-645
               
               
               Cow position:chr1:94261669-94261347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:247
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):107, 21

               
               
               Conread position:312-673
               
               
               Cow position:chr1:4291298-4290930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 21

               
               
               Conread position:312-673
               
               
               Cow position:chr1:21836063-21835720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 12

               
               
               Conread position:312-673
               
               
               Cow position:chr1:49839618-49839279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 21

               
               
               Conread position:313-509
               
               
               Cow position:chr1:30136217-30136419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):25, 118

               
               
               Conread position:313-552
               
               
               Cow position:chr1:26894837-26895083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):11, 22

               
               
               Conread position:313-590
               
               
               Cow position:chr1:23512526-23512804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):7, 22

               
               
               Conread position:313-603
               
               
               Cow position:chr1:3882326-3882627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:219
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):105, 20

               
               
               Conread position:313-654
               
               
               Cow position:chr1:62036936-62036591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 122

               
               
               Conread position:313-673
               
               
               Cow position:chr1:3138046-3137705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:265
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):156, 21

               
               
               Conread position:313-673
               
               
               Cow position:chr1:36875159-36874787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 20

               
               
               Conread position:313-674
               
               
               Cow position:chr1:53308259-53308622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 55

               
               
               Conread position:314-482
               
               
               Cow position:chr1:54157428-54157257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):105, 19

               
               
               Conread position:314-503
               
               
               Cow position:chr1:84768745-84768936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):9, 21

               
               
               Conread position:314-534
               
               
               Cow position:chr1:67688451-67688669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):104, 19

               
               
               Conread position:314-561
               
               
               Cow position:chr1:58037150-58036904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):105, 19

               
               
               Conread position:314-673
               
               
               Cow position:chr1:36932285-36931931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 13

               
               
               Conread position:314-673
               
               
               Cow position:chr1:81913023-81913380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 19

               
               
               Conread position:315-553
               
               
               Cow position:chr1:7023252-7023008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):99, 18

               
               
               Conread position:315-567
               
               
               Cow position:chr1:100569287-100569025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):115, 42

               
               
               Conread position:315-670
               
               
               Cow position:chr1:66430423-66430072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 122

               
               
               Conread position:315-671
               
               
               Cow position:chr1:80336117-80336473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 34

               
               
               Conread position:315-672
               
               
               Cow position:chr1:97611526-97611880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 18

               
               
               Conread position:315-674
               
               
               Cow position:chr1:5135580-5135921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:254
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):99, 8

               
               
               Conread position:315-674
               
               
               Cow position:chr1:69264939-69264592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 18

               
               
               Conread position:315-675
               
               
               Cow position:chr1:80988477-80988116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 40

               
               
               Conread position:316-586
               
               
               Cow position:chr1:68676490-68676227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):103, 120

               
               
               Conread position:316-673
               
               
               Cow position:chr1:42360418-42360038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 18

               
               
               Conread position:316-673
               
               
               Cow position:chr1:98360274-98360637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 11

               
               
               Conread position:317-504
               
               
               Cow position:chr1:60901202-60901014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):69, 90

               
               
               Conread position:317-673
               
               
               Cow position:chr1:25281524-25281904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 121

               
               
               Conread position:317-677
               
               
               Cow position:chr1:52052588-52052936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:258
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):102, 10

               
               
               Conread position:318-512
               
               
               Cow position:chr1:96599155-96599348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):10, 122

               
               
               Conread position:318-551
               
               
               Cow position:chr1:48769931-48769694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:184
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):97, 117

               
               
               Conread position:318-561
               
               
               Cow position:chr1:65028661-65028414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:192
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):100, 25

               
               
               Conread position:318-675
               
               
               Cow position:chr1:1165728-1165370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 56

               
               
               Conread position:319-673
               
               
               Cow position:chr1:22827286-22826941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 117

               
               
               Conread position:320-603
               
               
               Cow position:chr1:85647654-85647944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 42

               
               
               Conread position:320-671
               
               
               Cow position:chr1:83582807-83583164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 13

               
               
               Conread position:320-672
               
               
               Cow position:chr1:3789944-3790283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:246
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):97, 17

               
               
               Conread position:320-673
               
               
               Cow position:chr1:51968590-51968242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):13, 118

               
               
               Conread position:320-674
               
               
               Cow position:chr1:52995152-52994794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 14

               
               
               Conread position:321-673
               
               
               Cow position:chr1:41252285-41252631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):230, 12

               
               
               Conread position:321-675
               
               
               Cow position:chr1:96947594-96947924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:246
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):16, 67

               
               
               Conread position:322-579
               
               
               Cow position:chr1:24406773-24407025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):97, 5

               
               
               Conread position:322-674
               
               
               Cow position:chr1:98594689-98594341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 11

               
               
               Conread position:322-676
               
               
               Cow position:chr1:8349200-8349542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:255
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):18, 6

               
               
               Conread position:323-617
               
               
               Cow position:chr1:24876385-24876093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):107, 10

               
               
               Conread position:323-674
               
               
               Cow position:chr1:84241005-84240670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:251
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):11, 42

               
               
               Conread position:323-675
               
               
               Cow position:chr1:100706250-100705902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 96

               
               
               Conread position:324-673
               
               
               Cow position:chr1:42873827-42874175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 166

               
               
               Conread position:325-605
               
               
               Cow position:chr1:24188345-24188068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):99, 94

               
               
               Conread position:326-627
               
               
               Cow position:chr1:101701525-101701829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):13, 98

               
               
               Conread position:327-629
               
               
               Cow position:chr1:75933386-75933088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):204, 134

               
               
               Conread position:327-670
               
               
               Cow position:chr1:20099485-20099138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:238
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):91, 22

               
               
               Conread position:328-456
               
               
               Cow position:chr1:31855128-31855258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:328-481
               
               
               Cow position:chr1:92590310-92590162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:328-528
               
               
               Cow position:chr1:92989709-92989507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):14, 29

               
               
               Conread position:328-577
               
               
               Cow position:chr1:3352581-3352838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):90, 110

               
               
               Conread position:328-605
               
               
               Cow position:chr1:75347744-75347456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):10, 50

               
               
               Conread position:328-678
               
               
               Cow position:chr1:70380024-70380379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 96

               
               
               Conread position:329-673
               
               
               Cow position:chr1:72141690-72141336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:260
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):95, 27

               
               
               Conread position:330-590
               
               
               Cow position:chr1:30047486-30047740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):197, 55

               
               
               Conread position:330-673
               
               
               Cow position:chr1:93810546-93810213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):84, 146

               
               
               Conread position:331-503
               
               
               Cow position:chr1:30504617-30504443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):87, 104

               
               
               Conread position:331-673
               
               
               Cow position:chr1:53495577-53495235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:241
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):37, 57

               
               
               Conread position:331-674
               
               
               Cow position:chr1:43822515-43822147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:257
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):153, 82

               
               
               Conread position:331-697
               
               
               Cow position:chr1:72285952-72286300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:267
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):89, 108

               
               
               Conread position:332-609
               
               
               Cow position:chr1:75142110-75141834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 8

               
               
               Conread position:332-671
               
               
               Cow position:chr1:37309404-37309736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 152

               
               
               Conread position:332-673
               
               
               Cow position:chr1:95215075-95215414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 103

               
               
               Conread position:334-615
               
               
               Cow position:chr1:12978795-12978506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:210
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):78, 97

               
               
               Conread position:334-672
               
               
               Cow position:chr1:81868617-81868954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 12

               
               
               Conread position:334-674
               
               
               Cow position:chr1:81355589-81355933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 195

               
               
               Conread position:336-666
               
               
               Cow position:chr1:26702096-26702429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 79

               
               
               Conread position:337-464
               
               
               Cow position:chr1:88111981-88111856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:98
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:337-475
               
               
               Cow position:chr1:5006271-5006132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):82, 62

               
               
               Conread position:337-535
               
               
               Cow position:chr1:4581220-4581417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):81, 98

               
               
               Conread position:337-539
               
               
               Cow position:chr1:61542809-61543012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):73, 100

               
               
               Conread position:337-580
               
               
               Cow position:chr1:89230121-89230367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):77, 59

               
               
               Conread position:337-604
               
               
               Cow position:chr1:77683462-77683194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:205
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):87, 82

               
               
               Conread position:337-616
               
               
               Cow position:chr1:60281483-60281195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):81, 101

               
               
               Conread position:337-634
               
               
               Cow position:chr1:91039064-91039366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:219
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):76, 96

               
               
               Conread position:337-671
               
               
               Cow position:chr1:82884285-82884614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 38

               
               
               Conread position:337-673
               
               
               Cow position:chr1:45288762-45289101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 7

               
               
               Conread position:337-674
               
               
               Cow position:chr1:88652746-88652401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 59

               
               
               Conread position:337-686
               
               
               Cow position:chr1:89350075-89349735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 98

               
               
               Conread position:339-614
               
               
               Cow position:chr1:27380564-27380301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):66, 76

               
               
               Conread position:339-673
               
               
               Cow position:chr1:7350655-7350310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 10

               
               
               Conread position:340-539
               
               
               Cow position:chr1:19226950-19227149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):74, 95

               
               
               Conread position:340-650
               
               
               Cow position:chr1:4414102-4414413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 68

               
               
               Conread position:340-673
               
               
               Cow position:chr1:92434106-92433791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:238
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):75, 20

               
               
               Conread position:341-652
               
               
               Cow position:chr1:100393057-100393372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:222
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):77, 97

               
               
               Conread position:343-691
               
               
               Cow position:chr1:26447545-26447217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):81, 70

               
               
               Conread position:344-597
               
               
               Cow position:chr1:9534265-9534019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):28, 50

               
               
               Conread position:344-652
               
               
               Cow position:chr1:62291598-62291893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):186, 88

               
               
               Conread position:344-673
               
               
               Cow position:chr1:56635201-56634870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:241
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):68, 90

               
               
               Conread position:345-673
               
               
               Cow position:chr1:51531853-51531545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):69, 92

               
               
               Conread position:345-675
               
               
               Cow position:chr1:85774559-85774229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 89

               
               
               Conread position:346-691
               
               
               Cow position:chr1:20384522-20384868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 68

               
               
               Conread position:347-673
               
               
               Cow position:chr1:20205127-20204798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 89

               
               
               Conread position:347-673
               
               
               Cow position:chr1:53425277-53424959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):65, 73

               
               
               Conread position:348-594
               
               
               Cow position:chr1:43703508-43703254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):76, 71

               
               
               Conread position:348-673
               
               
               Cow position:chr1:91800499-91800834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 53

               
               
               Conread position:349-674
               
               
               Cow position:chr1:69540380-69540053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:251
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):174, 45

               
               
               Conread position:351-674
               
               
               Cow position:chr1:26729809-26729498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:240
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):68, 35

               
               
               Conread position:353-669
               
               
               Cow position:chr1:89485674-89485362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):82, 233

               
               
               Conread position:354-673
               
               
               Cow position:chr1:55146891-55146573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 32

               
               
               Conread position:354-674
               
               
               Cow position:chr1:90641121-90640795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 40

               
               
               Conread position:356-602
               
               
               Cow position:chr1:70026254-70026505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):68, 116

               
               
               Conread position:356-622
               
               
               Cow position:chr1:95179045-95178773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):68, 62

               
               
               Conread position:356-674
               
               
               Cow position:chr1:4374246-4374568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 116

               
               
               Conread position:358-596
               
               
               Cow position:chr1:101946625-101946862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):61, 73

               
               
               Conread position:358-670
               
               
               Cow position:chr1:55135924-55135607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 9

               
               
               Conread position:358-673
               
               
               Cow position:chr1:85597027-85596716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:230
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):126, 61

               
               
               Conread position:359-673
               
               
               Cow position:chr1:68951713-68951403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 39

               
               
               Conread position:363-663
               
               
               Cow position:chr1:98311156-98310842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:232
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):35, 77

               
               
               Conread position:364-535
               
               
               Cow position:chr1:55088972-55089143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):99, 64

               
               
               Conread position:367-628
               
               
               Cow position:chr1:73682162-73682420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):62, 93

               
               
               Conread position:367-645
               
               
               Cow position:chr1:63138921-63138638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):63, 229

               
               
               Conread position:367-652
               
               
               Cow position:chr1:86482984-86482696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):62, 127

               
               
               Conread position:367-674
               
               
               Cow position:chr1:92370289-92370590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:226
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):63, 101

               
               
               Conread position:368-526
               
               
               Cow position:chr1:61560644-61560807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):50, 67

               
               
               Conread position:368-605
               
               
               Cow position:chr1:9470318-9470562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):5, 71

               
               
               Conread position:368-640
               
               
               Cow position:chr1:6788204-6788485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 70

               
               
               Conread position:368-675
               
               
               Cow position:chr1:60707482-60707173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):61, 56

               
               
               Conread position:370-584
               
               
               Cow position:chr1:87440544-87440325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):48, 12

               
               
               Conread position:370-672
               
               
               Cow position:chr1:44769032-44769339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 67

               
               
               Conread position:372-673
               
               
               Cow position:chr1:102647198-102647497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:226
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):52, 47

               
               
               Conread position:373-614
               
               
               Cow position:chr1:69127092-69127336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):40, 52

               
               
               Conread position:375-643
               
               
               Cow position:chr1:51654496-51654212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):44, 63

               
               
               Conread position:377-649
               
               
               Cow position:chr1:95654643-95654920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):64, 42

               
               
               Conread position:377-673
               
               
               Cow position:chr1:79278377-79278670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):42, 27

               
               
               Conread position:379-673
               
               
               Cow position:chr1:1991350-1991653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 41

               
               
               Conread position:383-559
               
               
               Cow position:chr1:8984618-8984803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):36, 116

               
               
               Conread position:385-675
               
               
               Cow position:chr1:60907439-60907131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:214
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:390-607
               
               
               Cow position:chr1:89508606-89508390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):28, 48

               
               
               Conread position:390-623
               
               
               Cow position:chr1:24445571-24445807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):17, 47

               
               
               Conread position:390-671
               
               
               Cow position:chr1:100770694-100770965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):5, 51

               
               
               Conread position:390-684
               
               
               Cow position:chr1:93228582-93228282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):29, 48

               
               
               Conread position:392-540
               
               
               Cow position:chr1:71716560-71716415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):88, 18

               
               
               Conread position:392-634
               
               
               Cow position:chr1:24413504-24413250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):24, 19

               
               
               Conread position:392-671
               
               
               Cow position:chr1:44155305-44155036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):27, 47

               
               
               Conread position:397-637
               
               
               Cow position:chr1:82443404-82443649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):33, 207

               
               
               Conread position:399-671
               
               
               Cow position:chr1:22448537-22448813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:209
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):68, 16

               
               
               Conread position:399-674
               
               
               Cow position:chr1:99136382-99136660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):19, 24

               
               
               Conread position:400-630
               
               
               Cow position:chr1:20544344-20544106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):25, 158

               
               
               Conread position:400-671
               
               
               Cow position:chr1:24235472-24235747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):19, 68

               
               
               Conread position:401-671
               
               
               Cow position:chr1:31234889-31235158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):83, 14

               
               
               Conread position:401-673
               
               
               Cow position:chr1:45535753-45535474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 18

               
               
               Conread position:402-670
               
               
               Cow position:chr1:95017484-95017741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):17, 36

               
               
               Conread position:402-673
               
               
               Cow position:chr1:55163961-55163694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 33

               
               
               Conread position:403-629
               
               
               Cow position:chr1:99039311-99039537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):15, 31

               
               
               Conread position:404-673
               
               
               Cow position:chr1:61723976-61724253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):11, 34

               
               
               Conread position:404-674
               
               
               Cow position:chr1:57635505-57635237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):20, 15

               
               
               Conread position:405-669
               
               
               Cow position:chr1:1802180-1801915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):64, 31

               
               
               Conread position:405-673
               
               
               Cow position:chr1:3034957-3035221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):14, 33

               
               
               Conread position:407-672
               
               
               Cow position:chr1:53207668-53207922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):114, 29

               
               
               Conread position:408-674
               
               
               Cow position:chr1:82505014-82504737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:203
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):14, 29

               
               
               Conread position:409-671
               
               
               Cow position:chr1:3244887-3244624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):26, 97

               
               
               Conread position:409-673
               
               
               Cow position:chr1:56643551-56643817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):60, 26

               
               
               Conread position:410-601
               
               
               Cow position:chr1:51684841-51684643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):57, 26

               
               
               Conread position:412-673
               
               
               Cow position:chr1:71818429-71818690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:201
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):11, 17

               
               
               Conread position:413-673
               
               
               Cow position:chr1:82861816-82861546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):11, 110

               
               
               Conread position:417-594
               
               
               Cow position:chr1:1403454-1403632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):67, 18

               
               
               Conread position:417-596
               
               
               Cow position:chr1:38544437-38544616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):47, 19

               
               
               Conread position:417-640
               
               
               Cow position:chr1:64421358-64421135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):49, 19

               
               
               Conread position:417-674
               
               
               Cow position:chr1:5872940-5873201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):46, 19

               
               
               Conread position:417-674
               
               
               Cow position:chr1:98563189-98562930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):124, 19

               
               
               Conread position:418-684
               
               
               Cow position:chr1:29671495-29671764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:200
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):55, 17

               
               
               Conread position:419-644
               
               
               Cow position:chr1:81471158-81470929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):49, 17

               
               
               Conread position:419-673
               
               
               Cow position:chr1:79663648-79663894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:189
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):135, 16

               
               
               Conread position:421-693
               
               
               Cow position:chr1:63905451-63905723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:205
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):102, 15

               
               
               Conread position:423-674
               
               
               Cow position:chr1:56748625-56748360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):7, 106

               
               
               Conread position:427-672
               
               
               Cow position:chr1:46939838-46940089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):24, 183

               
               
               Conread position:429-638
               
               
               Cow position:chr1:83593791-83594001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):6, 40

               
               
               Conread position:429-673
               
               
               Cow position:chr1:33811945-33811706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):66, 7

               
               
               Conread position:429-675
               
               
               Cow position:chr1:95050071-95050330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):35, 69

               
               
               Conread position:434-596
               
               
               Cow position:chr1:64962656-64962824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):67, 50

               
               
               Conread position:434-670
               
               
               Cow position:chr1:44165097-44164853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):49, 90

               
               
               Conread position:434-672
               
               
               Cow position:chr1:52563798-52564018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:434-673
               
               
               Cow position:chr1:3340949-3340709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:180
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):50, 92

               
               
               Conread position:434-673
               
               
               Cow position:chr1:47009044-47008802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:185
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):49, 87

               
               
               Conread position:434-673
               
               
               Cow position:chr1:71946359-71946599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):44, 130

               
               
               Conread position:434-673
               
               
               Cow position:chr1:75967442-75967208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):96, 85

               
               
               Conread position:434-673
               
               
               Cow position:chr1:94404225-94403988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):50, 88

               
               
               Conread position:435-673
               
               
               Cow position:chr1:3661054-3661284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):47, 65

               
               
               Conread position:435-674
               
               
               Cow position:chr1:19998032-19998265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:436-637
               
               
               Cow position:chr1:56674117-56674322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):40, 89

               
               
               Conread position:436-653
               
               
               Cow position:chr1:32013963-32013748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):91, 34

               
               
               Conread position:436-663
               
               
               Cow position:chr1:98557775-98558002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:436-664
               
               
               Cow position:chr1:45673725-45673492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):15, 91

               
               
               Conread position:436-669
               
               
               Cow position:chr1:68782627-68782875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):39, 121

               
               
               Conread position:436-671
               
               
               Cow position:chr1:78783557-78783320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):35, 57

               
               
               Conread position:436-671
               
               
               Cow position:chr1:78794727-78794962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):24, 109

               
               
               Conread position:436-673
               
               
               Cow position:chr1:3456878-3456644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):42, 13

               
               
               Conread position:436-673
               
               
               Cow position:chr1:11873352-11873585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):49, 68

               
               
               Conread position:440-630
               
               
               Cow position:chr1:89083110-89082922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):87, 25

               
               
               Conread position:440-673
               
               
               Cow position:chr1:61725109-61725341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):87, 49

               
               
               Conread position:440-674
               
               
               Cow position:chr1:666371-666131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):48, 81

               
               
               Conread position:441-673
               
               
               Cow position:chr1:3776615-3776842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):85, 18

               
               
               Conread position:441-673
               
               
               Cow position:chr1:34000915-34000677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):86, 43

               
               
               Conread position:442-592
               
               
               Cow position:chr1:98396957-98397107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):93, 41

               
               
               Conread position:456-671
               
               
               Cow position:chr1:20288113-20287888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:456-673
               
               
               Cow position:chr1:53410925-53411137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):25, 48

               
               
               Conread position:469-675
               
               
               Cow position:chr1:4589497-4589711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):16, 51

               
               
               Conread position:470-673
               
               
               Cow position:chr1:98708412-98708214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):57, 11

               
               
               Conread position:474-673
               
               
               Cow position:chr1:97806759-97806564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):54, 45

               
               
               Conread position:483-684
               
               
               Cow position:chr1:20799847-20799632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):45, 37

               
               
               Conread position:484-677
               
               
               Cow position:chr1:89395562-89395360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):43, 36

               
               
               Conread position:487-674
               
               
               Cow position:chr1:19545141-19545329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:156
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):40, 33

               
               
               Conread position:488-674
               
               
               Cow position:chr1:30504428-30504241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):42, 32

               
               
               Conread position:88-673
               
               
               Cow position:chr10:38014695-38014114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):326, 268

               
               
               Conread position:162-395
               
               
               Cow position:chr10:35026964-35026727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):34, 21

               
               
               Conread position:163-392
               
               
               Cow position:chr10:25475785-25475558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):28, 21

               
               
               Conread position:182-686
               
               
               Cow position:chr10:35796106-35796586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:321
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):10, 28

               
               
               Conread position:206-673
               
               
               Cow position:chr10:45728753-45729181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):218, 26

               
               
               Conread position:207-664
               
               
               Cow position:chr10:22396479-22396005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 12

               
               
               Conread position:208-522
               
               
               Cow position:chr10:55395769-55396085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 103

               
               
               Conread position:228-668
               
               
               Cow position:chr10:37708837-37709292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 90

               
               
               Conread position:230-673
               
               
               Cow position:chr10:41397663-41397221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:296
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):10, 204

               
               
               Conread position:230-675
               
               
               Cow position:chr10:29627775-29628211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:298
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):10, 134

               
               
               Conread position:231-504
               
               
               Cow position:chr10:24448045-24447773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):97, 43

               
               
               Conread position:233-674
               
               
               Cow position:chr10:17844948-17844508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 20

               
               
               Conread position:233-675
               
               
               Cow position:chr10:37286987-37287438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:305
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):17, 67

               
               
               Conread position:233-686
               
               
               Cow position:chr10:62114868-62114425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:304
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):95, 20

               
               
               Conread position:234-378
               
               
               Cow position:chr10:48130197-48130056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:234-392
               
               
               Cow position:chr10:1417774-1417622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:234-399
               
               
               Cow position:chr10:25142353-25142518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):91, 155

               
               
               Conread position:234-405
               
               
               Cow position:chr10:34903657-34903488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):9, 87

               
               
               Conread position:234-417
               
               
               Cow position:chr10:18154273-18154085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):84, 19

               
               
               Conread position:234-418
               
               
               Cow position:chr10:27544634-27544452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:234-422
               
               
               Cow position:chr10:28223399-28223208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):91, 161

               
               
               Conread position:234-422
               
               
               Cow position:chr10:36855945-36856137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):85, 15

               
               
               Conread position:234-422
               
               
               Cow position:chr10:57095021-57095206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):9, 40

               
               
               Conread position:234-428
               
               
               Cow position:chr10:37971944-37971759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:234-458
               
               
               Cow position:chr10:16830202-16830429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):92, 18

               
               
               Conread position:234-460
               
               
               Cow position:chr10:39258308-39258539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):84, 133

               
               
               Conread position:234-465
               
               
               Cow position:chr10:41676231-41676461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):9, 84

               
               
               Conread position:234-476
               
               
               Cow position:chr10:39622181-39622414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):180, 130

               
               
               Conread position:234-478
               
               
               Cow position:chr10:10027757-10027512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):92, 118

               
               
               Conread position:234-526
               
               
               Cow position:chr10:22888635-22888926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 33

               
               
               Conread position:234-528
               
               
               Cow position:chr10:21923336-21923631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):84, 12

               
               
               Conread position:234-529
               
               
               Cow position:chr10:36531542-36531845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):92, 124

               
               
               Conread position:234-530
               
               
               Cow position:chr10:61509763-61510056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 91

               
               
               Conread position:234-535
               
               
               Cow position:chr10:15248857-15249166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):92, 18

               
               
               Conread position:234-542
               
               
               Cow position:chr10:37068238-37068540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):241, 93

               
               
               Conread position:234-561
               
               
               Cow position:chr10:53076313-53075971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:238
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):13, 217

               
               
               Conread position:234-579
               
               
               Cow position:chr10:44764310-44764673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:263
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):61, 15

               
               
               Conread position:234-589
               
               
               Cow position:chr10:45965677-45965322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:256
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):181, 19

               
               
               Conread position:234-605
               
               
               Cow position:chr10:20391252-20391640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:266
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):89, 18

               
               
               Conread position:234-621
               
               
               Cow position:chr10:17022386-17022764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:256
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):171, 39

               
               
               Conread position:234-623
               
               
               Cow position:chr10:23096588-23096992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:267
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):55, 40

               
               
               Conread position:234-671
               
               
               Cow position:chr10:45371241-45370798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 97

               
               
               Conread position:234-671
               
               
               Cow position:chr10:47543253-47542834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 44

               
               
               Conread position:234-672
               
               
               Cow position:chr10:1978489-1978921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 100

               
               
               Conread position:234-672
               
               
               Cow position:chr10:35731344-35731784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 88

               
               
               Conread position:234-673
               
               
               Cow position:chr10:1976137-1976579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):231, 15

               
               
               Conread position:234-673
               
               
               Cow position:chr10:9288210-9287808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:304
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:234-673
               
               
               Cow position:chr10:17073184-17073612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 98

               
               
               Conread position:234-673
               
               
               Cow position:chr10:37529091-37529528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 85

               
               
               Conread position:234-673
               
               
               Cow position:chr10:39398337-39398777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:291
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):82, 18

               
               
               Conread position:234-674
               
               
               Cow position:chr10:14816977-14817424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 137

               
               
               Conread position:234-674
               
               
               Cow position:chr10:33163911-33163449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:299
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):79, 19

               
               
               Conread position:234-675
               
               
               Cow position:chr10:63276572-63276130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 40

               
               
               Conread position:234-689
               
               
               Cow position:chr10:34898139-34897723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 42

               
               
               Conread position:235-379
               
               
               Cow position:chr10:32440383-32440238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):73, 14

               
               
               Conread position:235-446
               
               
               Cow position:chr10:5784070-5784287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):78, 126

               
               
               Conread position:235-454
               
               
               Cow position:chr10:27136504-27136727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):82, 14

               
               
               Conread position:235-480
               
               
               Cow position:chr10:37425957-37426198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:191
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):179, 14

               
               
               Conread position:235-506
               
               
               Cow position:chr10:60491080-60491350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):8, 42

               
               
               Conread position:235-539
               
               
               Cow position:chr10:4151738-4151422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):8, 217

               
               
               Conread position:235-553
               
               
               Cow position:chr10:48407314-48407005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:233
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):99, 12

               
               
               Conread position:235-645
               
               
               Cow position:chr10:69564787-69564372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:285
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):56, 17

               
               
               Conread position:235-670
               
               
               Cow position:chr10:10148831-10148394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 14

               
               
               Conread position:235-673
               
               
               Cow position:chr10:24871352-24870906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 14

               
               
               Conread position:235-673
               
               
               Cow position:chr10:49146689-49146274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 39

               
               
               Conread position:235-673
               
               
               Cow position:chr10:49846956-49846517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 17

               
               
               Conread position:235-675
               
               
               Cow position:chr10:23506308-23506746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 14

               
               
               Conread position:236-368
               
               
               Cow position:chr10:26607437-26607566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:236-411
               
               
               Cow position:chr10:22972823-22972999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):64, 48

               
               
               Conread position:236-421
               
               
               Cow position:chr10:42115535-42115355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):179, 16

               
               
               Conread position:236-429
               
               
               Cow position:chr10:40933944-40933745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):79, 26

               
               
               Conread position:236-430
               
               
               Cow position:chr10:55043460-55043658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):90, 14

               
               
               Conread position:236-450
               
               
               Cow position:chr10:37174274-37174487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):92, 10

               
               
               Conread position:236-452
               
               
               Cow position:chr10:35637961-35638176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):90, 114

               
               
               Conread position:236-474
               
               
               Cow position:chr10:55599973-55600215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):43, 51

               
               
               Conread position:236-477
               
               
               Cow position:chr10:763087-762853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):7, 39

               
               
               Conread position:236-535
               
               
               Cow position:chr10:60446912-60446612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 90

               
               
               Conread position:236-542
               
               
               Cow position:chr10:58451198-58451499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 36

               
               
               Conread position:236-545
               
               
               Cow position:chr10:3364006-3364313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:224
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):182, 10

               
               
               Conread position:236-572
               
               
               Cow position:chr10:19191934-19191615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:237
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:236-634
               
               
               Cow position:chr10:1996493-1996885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 84

               
               
               Conread position:236-652
               
               
               Cow position:chr10:43531447-43531015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:294
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):77, 16

               
               
               Conread position:236-668
               
               
               Cow position:chr10:5151532-5151097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:236-672
               
               
               Cow position:chr10:19104002-19104435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 17

               
               
               Conread position:236-672
               
               
               Cow position:chr10:55733429-55733857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 78

               
               
               Conread position:236-673
               
               
               Cow position:chr10:6852442-6852013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 13

               
               
               Conread position:236-673
               
               
               Cow position:chr10:8277735-8277283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:303
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):91, 17

               
               
               Conread position:236-673
               
               
               Cow position:chr10:15817616-15818055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 38

               
               
               Conread position:236-673
               
               
               Cow position:chr10:39228345-39227898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 215

               
               
               Conread position:236-674
               
               
               Cow position:chr10:40107284-40106856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 102

               
               
               Conread position:236-684
               
               
               Cow position:chr10:38370272-38370733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 16

               
               
               Conread position:236-691
               
               
               Cow position:chr10:37512059-37512526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 37

               
               
               Conread position:237-527
               
               
               Cow position:chr10:29328219-29328500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):182, 13

               
               
               Conread position:237-539
               
               
               Cow position:chr10:45294960-45295264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):81, 29

               
               
               Conread position:237-541
               
               
               Cow position:chr10:66365483-66365166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:214
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):88, 15

               
               
               Conread position:237-602
               
               
               Cow position:chr10:2613545-2613175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 12

               
               
               Conread position:237-609
               
               
               Cow position:chr10:19709563-19709162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:264
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):89, 15

               
               
               Conread position:237-652
               
               
               Cow position:chr10:55051061-55050632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:277
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):89, 16

               
               
               Conread position:237-664
               
               
               Cow position:chr10:11009598-11009174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 12

               
               
               Conread position:237-673
               
               
               Cow position:chr10:42313086-42312649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 16

               
               
               Conread position:238-402
               
               
               Cow position:chr10:18849701-18849538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:238-405
               
               
               Cow position:chr10:38329826-38329655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:238-422
               
               
               Cow position:chr10:2328369-2328183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):88, 14

               
               
               Conread position:238-422
               
               
               Cow position:chr10:19503102-19503289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):72, 14

               
               
               Conread position:238-423
               
               
               Cow position:chr10:44758986-44758804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:238-426
               
               
               Cow position:chr10:6719155-6718965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):88, 15

               
               
               Conread position:238-436
               
               
               Cow position:chr10:17518667-17518868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):88, 11

               
               
               Conread position:238-445
               
               
               Cow position:chr10:50050076-50049880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):107, 14

               
               
               Conread position:238-464
               
               
               Cow position:chr10:47159383-47159166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):177, 14

               
               
               Conread position:238-465
               
               
               Cow position:chr10:22980801-22981028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):177, 81

               
               
               Conread position:238-472
               
               
               Cow position:chr10:35248962-35249191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):24, 15

               
               
               Conread position:238-479
               
               
               Cow position:chr10:43586105-43586348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):25, 107

               
               
               Conread position:238-482
               
               
               Cow position:chr10:25822076-25822310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):179, 11

               
               
               Conread position:238-503
               
               
               Cow position:chr10:35715408-35715690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):80, 93

               
               
               Conread position:238-521
               
               
               Cow position:chr10:48178517-48178247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):178, 12

               
               
               Conread position:238-524
               
               
               Cow position:chr10:63484815-63484532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):181, 11

               
               
               Conread position:238-530
               
               
               Cow position:chr10:19539647-19539934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):85, 11

               
               
               Conread position:238-538
               
               
               Cow position:chr10:33881601-33881906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):97, 238

               
               
               Conread position:238-539
               
               
               Cow position:chr10:45623997-45624274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):173, 27

               
               
               Conread position:238-594
               
               
               Cow position:chr10:11463482-11463850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 14

               
               
               Conread position:238-610
               
               
               Cow position:chr10:7291637-7291996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:261
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):88, 11

               
               
               Conread position:238-613
               
               
               Cow position:chr10:40738168-40737800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 16

               
               
               Conread position:238-631
               
               
               Cow position:chr10:37765216-37764799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:274
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):88, 116

               
               
               Conread position:238-663
               
               
               Cow position:chr10:61588079-61588510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 14

               
               
               Conread position:238-667
               
               
               Cow position:chr10:38944437-38944006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:294
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):88, 15

               
               
               Conread position:238-671
               
               
               Cow position:chr10:56733206-56732789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:297
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):91, 11

               
               
               Conread position:238-672
               
               
               Cow position:chr10:28176223-28176651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 53

               
               
               Conread position:238-672
               
               
               Cow position:chr10:48316765-48317213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 199

               
               
               Conread position:238-672
               
               
               Cow position:chr10:56475632-56475211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 14

               
               
               Conread position:238-673
               
               
               Cow position:chr10:16093389-16092956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):241, 175

               
               
               Conread position:238-673
               
               
               Cow position:chr10:44771824-44771397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:296
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):177, 8

               
               
               Conread position:238-673
               
               
               Cow position:chr10:67442943-67443364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):246, 11

               
               
               Conread position:238-675
               
               
               Cow position:chr10:34607743-34607297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 289

               
               
               Conread position:238-675
               
               
               Cow position:chr10:64285621-64286058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 72

               
               
               Conread position:238-686
               
               
               Cow position:chr10:19394388-19394851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 14

               
               
               Conread position:238-696
               
               
               Cow position:chr10:36490196-36489739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 14

               
               
               Conread position:239-404
               
               
               Cow position:chr10:58066010-58066176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):74, 35

               
               
               Conread position:239-408
               
               
               Cow position:chr10:19403091-19402918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:239-415
               
               
               Cow position:chr10:52152975-52152797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):61, 44

               
               
               Conread position:239-422
               
               
               Cow position:chr10:9959396-9959212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):89, 114

               
               
               Conread position:239-422
               
               
               Cow position:chr10:39140486-39140314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):105, 52

               
               
               Conread position:239-422
               
               
               Cow position:chr10:58807571-58807748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:239-426
               
               
               Cow position:chr10:14732797-14732617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):171, 46

               
               
               Conread position:239-432
               
               
               Cow position:chr10:16641752-16641946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):120, 89

               
               
               Conread position:239-446
               
               
               Cow position:chr10:27178664-27178465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:239-462
               
               
               Cow position:chr10:48377217-48377444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):79, 160

               
               
               Conread position:239-464
               
               
               Cow position:chr10:10153182-10152961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):176, 13

               
               
               Conread position:239-482
               
               
               Cow position:chr10:17567927-17568167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):163, 21

               
               
               Conread position:239-519
               
               
               Cow position:chr10:46934600-46934889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):73, 93

               
               
               Conread position:239-539
               
               
               Cow position:chr10:24004285-24004594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):99, 124

               
               
               Conread position:239-539
               
               
               Cow position:chr10:52881439-52881744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:221
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:239-552
               
               
               Cow position:chr10:41132440-41132131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):178, 88

               
               
               Conread position:239-579
               
               
               Cow position:chr10:9656347-9656709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:261
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):176, 85

               
               
               Conread position:239-587
               
               
               Cow position:chr10:69587505-69587856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):57, 27

               
               
               Conread position:239-652
               
               
               Cow position:chr10:53907549-53907956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:278
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):61, 14

               
               
               Conread position:239-669
               
               
               Cow position:chr10:10048855-10048426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:308
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):77, 121

               
               
               Conread position:239-669
               
               
               Cow position:chr10:27716659-27717097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:288
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):98, 122

               
               
               Conread position:239-671
               
               
               Cow position:chr10:2462300-2462735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 35

               
               
               Conread position:239-671
               
               
               Cow position:chr10:22341752-22341308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 85

               
               
               Conread position:239-671
               
               
               Cow position:chr10:37014814-37014382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 48

               
               
               Conread position:239-672
               
               
               Cow position:chr10:48259067-48259489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:285
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):87, 138

               
               
               Conread position:239-673
               
               
               Cow position:chr10:16598869-16598430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 187

               
               
               Conread position:239-673
               
               
               Cow position:chr10:20371954-20372390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 45

               
               
               Conread position:239-673
               
               
               Cow position:chr10:22049446-22048994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 109

               
               
               Conread position:239-673
               
               
               Cow position:chr10:24312714-24313148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 85

               
               
               Conread position:239-673
               
               
               Cow position:chr10:33215970-33215538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 47

               
               
               Conread position:239-673
               
               
               Cow position:chr10:43439032-43438611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:307
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):178, 45

               
               
               Conread position:239-673
               
               
               Cow position:chr10:52569773-52569336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 286

               
               
               Conread position:239-673
               
               
               Cow position:chr10:54848955-54848519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):244, 89

               
               
               Conread position:239-674
               
               
               Cow position:chr10:24560811-24561247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 108

               
               
               Conread position:239-674
               
               
               Cow position:chr10:68182783-68183191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:291
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):9, 57

               
               
               Conread position:239-675
               
               
               Cow position:chr10:11081150-11080697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 294

               
               
               Conread position:239-675
               
               
               Cow position:chr10:41408444-41408026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 87

               
               
               Conread position:239-675
               
               
               Cow position:chr10:43487893-43487450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 19

               
               
               Conread position:239-675
               
               
               Cow position:chr10:57033619-57034051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:292
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):99, 124

               
               
               Conread position:239-675
               
               
               Cow position:chr10:69934605-69935038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):239, 37

               
               
               Conread position:239-676
               
               
               Cow position:chr10:25936417-25935982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:298
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):51, 132

               
               
               Conread position:239-691
               
               
               Cow position:chr10:65071499-65071034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 14

               
               
               Conread position:239-730
               
               
               Cow position:chr10:52296674-52296182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 176

               
               
               Conread position:240-392
               
               
               Cow position:chr10:24035842-24035995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):58, 46

               
               
               Conread position:240-395
               
               
               Cow position:chr10:10104956-10104803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:240-396
               
               
               Cow position:chr10:28259356-28259509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):78, 51

               
               
               Conread position:240-405
               
               
               Cow position:chr10:14668575-14668410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:240-410
               
               
               Cow position:chr10:55270839-55271018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):46, 78

               
               
               Conread position:240-412
               
               
               Cow position:chr10:55069383-55069214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:240-415
               
               
               Cow position:chr10:18751299-18751473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:240-417
               
               
               Cow position:chr10:3986067-3985890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:240-417
               
               
               Cow position:chr10:15383507-15383327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:240-417
               
               
               Cow position:chr10:30836855-30837036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:240-422
               
               
               Cow position:chr10:11047028-11047210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):77, 57

               
               
               Conread position:240-422
               
               
               Cow position:chr10:23478763-23478932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:240-422
               
               
               Cow position:chr10:37375568-37375754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:240-422
               
               
               Cow position:chr10:48353765-48353940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):175, 45

               
               
               Conread position:240-422
               
               
               Cow position:chr10:58148993-58149175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):175, 88

               
               
               Conread position:240-422
               
               
               Cow position:chr10:64877529-64877716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:240-426
               
               
               Cow position:chr10:24915542-24915727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:240-429
               
               
               Cow position:chr10:24971154-24971341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):179, 73

               
               
               Conread position:240-429
               
               
               Cow position:chr10:59417061-59417250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):101, 70

               
               
               Conread position:240-430
               
               
               Cow position:chr10:10829218-10829027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):178, 108

               
               
               Conread position:240-430
               
               
               Cow position:chr10:19679282-19679082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):67, 101

               
               
               Conread position:240-430
               
               
               Cow position:chr10:53563941-53564136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:240-431
               
               
               Cow position:chr10:38195797-38195989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):86, 117

               
               
               Conread position:240-432
               
               
               Cow position:chr10:49029825-49029637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):165, 87

               
               
               Conread position:240-439
               
               
               Cow position:chr10:40999034-40998835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):144, 94

               
               
               Conread position:240-440
               
               
               Cow position:chr10:49862640-49862445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):165, 79

               
               
               Conread position:240-441
               
               
               Cow position:chr10:9797736-9797933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):88, 12

               
               
               Conread position:240-447
               
               
               Cow position:chr10:20448095-20447884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):8, 37

               
               
               Conread position:240-460
               
               
               Cow position:chr10:52125516-52125729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):178, 13

               
               
               Conread position:240-464
               
               
               Cow position:chr10:23310849-23311076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):99, 169

               
               
               Conread position:240-466
               
               
               Cow position:chr10:16944637-16944421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):182, 36

               
               
               Conread position:240-467
               
               
               Cow position:chr10:24830895-24831135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):79, 25

               
               
               Conread position:240-467
               
               
               Cow position:chr10:50042795-50042556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):67, 194

               
               
               Conread position:240-468
               
               
               Cow position:chr10:14093073-14093295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):70, 32

               
               
               Conread position:240-474
               
               
               Cow position:chr10:32080444-32080217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:186
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):60, 45

               
               
               Conread position:240-474
               
               
               Cow position:chr10:45623612-45623845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):172, 70

               
               
               Conread position:240-475
               
               
               Cow position:chr10:20485383-20485618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):178, 91

               
               
               Conread position:240-478
               
               
               Cow position:chr10:32929163-32928912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:240-480
               
               
               Cow position:chr10:43272864-43273111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:191
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):71, 36

               
               
               Conread position:240-481
               
               
               Cow position:chr10:7309271-7309524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:240-494
               
               
               Cow position:chr10:5465626-5465886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):48, 122

               
               
               Conread position:240-503
               
               
               Cow position:chr10:23390142-23390405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):16, 56

               
               
               Conread position:240-506
               
               
               Cow position:chr10:23346130-23346395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):174, 93

               
               
               Conread position:240-535
               
               
               Cow position:chr10:19099006-19098717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:219
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):48, 44

               
               
               Conread position:240-541
               
               
               Cow position:chr10:42230981-42230666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):67, 9

               
               
               Conread position:240-573
               
               
               Cow position:chr10:2201958-2202287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:247
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):151, 33

               
               
               Conread position:240-577
               
               
               Cow position:chr10:38241256-38240917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:234
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):92, 13

               
               
               Conread position:240-592
               
               
               Cow position:chr10:63884122-63883771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 195

               
               
               Conread position:240-597
               
               
               Cow position:chr10:47690574-47690207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 36

               
               
               Conread position:240-600
               
               
               Cow position:chr10:4184380-4184002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 186

               
               
               Conread position:240-600
               
               
               Cow position:chr10:32834987-32834628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:257
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):182, 9

               
               
               Conread position:240-605
               
               
               Cow position:chr10:30787448-30787808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:270
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):68, 97

               
               
               Conread position:240-605
               
               
               Cow position:chr10:35653845-35653469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 67

               
               
               Conread position:240-614
               
               
               Cow position:chr10:66199529-66199905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:268
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):46, 99

               
               
               Conread position:240-617
               
               
               Cow position:chr10:24756585-24756210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 33

               
               
               Conread position:240-633
               
               
               Cow position:chr10:35245776-35246162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 69

               
               
               Conread position:240-634
               
               
               Cow position:chr10:31534915-31534521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 237

               
               
               Conread position:240-645
               
               
               Cow position:chr10:6436234-6435828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 73

               
               
               Conread position:240-648
               
               
               Cow position:chr10:45378824-45379242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 198

               
               
               Conread position:240-649
               
               
               Cow position:chr10:28841129-28840718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 33

               
               
               Conread position:240-650
               
               
               Cow position:chr10:37415960-37415549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 52

               
               
               Conread position:240-652
               
               
               Cow position:chr10:60721977-60722382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:286
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):94, 24

               
               
               Conread position:240-654
               
               
               Cow position:chr10:62220016-62219584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 295

               
               
               Conread position:240-655
               
               
               Cow position:chr10:8404383-8403968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 55

               
               
               Conread position:240-663
               
               
               Cow position:chr10:5889582-5890019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 63

               
               
               Conread position:240-663
               
               
               Cow position:chr10:59009962-59010390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 54

               
               
               Conread position:240-666
               
               
               Cow position:chr10:50558753-50559179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 46

               
               
               Conread position:240-670
               
               
               Cow position:chr10:23055916-23056338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 34

               
               
               Conread position:240-670
               
               
               Cow position:chr10:54947967-54948385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 67

               
               
               Conread position:240-671
               
               
               Cow position:chr10:2185534-2185075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:307
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):59, 150

               
               
               Conread position:240-671
               
               
               Cow position:chr10:31027464-31027901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 197

               
               
               Conread position:240-671
               
               
               Cow position:chr10:31400722-31401155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 33

               
               
               Conread position:240-671
               
               
               Cow position:chr10:50360105-50359656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 150

               
               
               Conread position:240-672
               
               
               Cow position:chr10:22616464-22616901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 36

               
               
               Conread position:240-672
               
               
               Cow position:chr10:51289421-51288996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 72

               
               
               Conread position:240-672
               
               
               Cow position:chr10:60236923-60237373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 69

               
               
               Conread position:240-673
               
               
               Cow position:chr10:2449529-2449094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 88

               
               
               Conread position:240-673
               
               
               Cow position:chr10:5599822-5600252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 99

               
               
               Conread position:240-673
               
               
               Cow position:chr10:10751810-10752239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 192

               
               
               Conread position:240-673
               
               
               Cow position:chr10:13586880-13586455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 34

               
               
               Conread position:240-673
               
               
               Cow position:chr10:15319080-15318629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 197

               
               
               Conread position:240-673
               
               
               Cow position:chr10:19372157-19372587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 197

               
               
               Conread position:240-673
               
               
               Cow position:chr10:34654934-34655370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 70

               
               
               Conread position:240-673
               
               
               Cow position:chr10:39874964-39875404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 203

               
               
               Conread position:240-673
               
               
               Cow position:chr10:58557342-58556937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 12

               
               
               Conread position:240-674
               
               
               Cow position:chr10:13764987-13765424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 194

               
               
               Conread position:240-674
               
               
               Cow position:chr10:15868433-15867975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 288

               
               
               Conread position:240-674
               
               
               Cow position:chr10:51306513-51306066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 72

               
               
               Conread position:240-674
               
               
               Cow position:chr10:51944535-51944102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 46

               
               
               Conread position:240-674
               
               
               Cow position:chr10:53179439-53179043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:309
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):163, 28

               
               
               Conread position:240-674
               
               
               Cow position:chr10:57461530-57461105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 83

               
               
               Conread position:240-674
               
               
               Cow position:chr10:62286742-62286291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 203

               
               
               Conread position:240-675
               
               
               Cow position:chr10:32775284-32774854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:299
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):72, 241

               
               
               Conread position:240-676
               
               
               Cow position:chr10:16414398-16414849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:307
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):180, 117

               
               
               Conread position:240-677
               
               
               Cow position:chr10:64042261-64041820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 115

               
               
               Conread position:240-678
               
               
               Cow position:chr10:28721956-28721527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:313
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):7, 117

               
               
               Conread position:240-684
               
               
               Cow position:chr10:21082547-21082125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 16

               
               
               Conread position:240-686
               
               
               Cow position:chr10:9575872-9576311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 94

               
               
               Conread position:240-686
               
               
               Cow position:chr10:20095944-20095483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 201

               
               
               Conread position:240-689
               
               
               Cow position:chr10:40163757-40164207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 87

               
               
               Conread position:241-405
               
               
               Cow position:chr10:47429999-47429838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:241-421
               
               
               Cow position:chr10:14542048-14541866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:241-422
               
               
               Cow position:chr10:28843536-28843352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):87, 110

               
               
               Conread position:241-422
               
               
               Cow position:chr10:44513085-44513268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):37, 74

               
               
               Conread position:241-461
               
               
               Cow position:chr10:30261431-30261648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:241-468
               
               
               Cow position:chr10:30121590-30121353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):9, 41

               
               
               Conread position:241-468
               
               
               Cow position:chr10:38995410-38995176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:183
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):77, 9

               
               
               Conread position:241-468
               
               
               Cow position:chr10:60697453-60697676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:241-474
               
               
               Cow position:chr10:35605219-35604990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):174, 12

               
               
               Conread position:241-475
               
               
               Cow position:chr10:1054563-1054347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:241-602
               
               
               Cow position:chr10:4148667-4148288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:249
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):9, 25

               
               
               Conread position:241-605
               
               
               Cow position:chr10:10120362-10120004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 8

               
               
               Conread position:241-626
               
               
               Cow position:chr10:25150063-25149687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:277
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):9, 94

               
               
               Conread position:241-637
               
               
               Cow position:chr10:45476043-45476441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:266
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):85, 113

               
               
               Conread position:241-667
               
               
               Cow position:chr10:57059098-57059534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 190

               
               
               Conread position:241-670
               
               
               Cow position:chr10:22390773-22390333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 94

               
               
               Conread position:241-671
               
               
               Cow position:chr10:6490054-6489609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 200

               
               
               Conread position:241-671
               
               
               Cow position:chr10:37235373-37235811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 66

               
               
               Conread position:241-673
               
               
               Cow position:chr10:38133305-38133742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:287
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):94, 21

               
               
               Conread position:241-673
               
               
               Cow position:chr10:58691077-58690645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:308
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):183, 8

               
               
               Conread position:241-673
               
               
               Cow position:chr10:62353632-62353207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 8

               
               
               Conread position:241-674
               
               
               Cow position:chr10:34661156-34661577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 32

               
               
               Conread position:241-683
               
               
               Cow position:chr10:46151045-46150615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:304
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):6, 79

               
               
               Conread position:242-417
               
               
               Cow position:chr10:15602003-15602181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:242-430
               
               
               Cow position:chr10:2984891-2985088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):76, 47

               
               
               Conread position:242-430
               
               
               Cow position:chr10:65904415-65904230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):71, 14

               
               
               Conread position:242-439
               
               
               Cow position:chr10:43459879-43460076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):172, 86

               
               
               Conread position:242-471
               
               
               Cow position:chr10:704812-705051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):86, 204

               
               
               Conread position:242-475
               
               
               Cow position:chr10:6242348-6242569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:242-506
               
               
               Cow position:chr10:34646281-34646540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):175, 32

               
               
               Conread position:242-517
               
               
               Cow position:chr10:55382492-55382211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):86, 62

               
               
               Conread position:242-534
               
               
               Cow position:chr10:61921968-61922258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:208
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):224, 186

               
               
               Conread position:242-538
               
               
               Cow position:chr10:31004841-31005142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 11

               
               
               Conread position:242-539
               
               
               Cow position:chr10:27118788-27119091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):114, 92

               
               
               Conread position:242-539
               
               
               Cow position:chr10:46327865-46327564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 92

               
               
               Conread position:242-540
               
               
               Cow position:chr10:48679090-48679388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):59, 116

               
               
               Conread position:242-551
               
               
               Cow position:chr10:34674189-34673884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):182, 82

               
               
               Conread position:242-578
               
               
               Cow position:chr10:6531991-6532319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:238
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):238, 31

               
               
               Conread position:242-615
               
               
               Cow position:chr10:68927322-68926953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:265
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):22, 11

               
               
               Conread position:242-617
               
               
               Cow position:chr10:8161681-8161301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:265
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):86, 119

               
               
               Conread position:242-631
               
               
               Cow position:chr10:44730299-44730698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:272
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):82, 186

               
               
               Conread position:242-663
               
               
               Cow position:chr10:47773895-47773485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 31

               
               
               Conread position:242-667
               
               
               Cow position:chr10:54504778-54504349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 95

               
               
               Conread position:242-670
               
               
               Cow position:chr10:63940946-63940519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 120

               
               
               Conread position:242-671
               
               
               Cow position:chr10:14947428-14947010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):231, 92

               
               
               Conread position:242-672
               
               
               Cow position:chr10:29166455-29166020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 43

               
               
               Conread position:242-673
               
               
               Cow position:chr10:8093149-8093574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 7

               
               
               Conread position:242-673
               
               
               Cow position:chr10:13311919-13311473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 185

               
               
               Conread position:242-673
               
               
               Cow position:chr10:23576715-23576284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 65

               
               
               Conread position:242-673
               
               
               Cow position:chr10:25342757-25342332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 77

               
               
               Conread position:242-673
               
               
               Cow position:chr10:30353025-30352585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 77

               
               
               Conread position:242-673
               
               
               Cow position:chr10:35792103-35791674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 188

               
               
               Conread position:242-674
               
               
               Cow position:chr10:60961121-60960680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 207

               
               
               Conread position:242-675
               
               
               Cow position:chr10:11966669-11967107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 45

               
               
               Conread position:243-462
               
               
               Cow position:chr10:38205543-38205757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):174, 77

               
               
               Conread position:243-465
               
               
               Cow position:chr10:10634386-10634169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):20, 31

               
               
               Conread position:243-504
               
               
               Cow position:chr10:58043953-58044220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 196

               
               
               Conread position:243-671
               
               
               Cow position:chr10:57786510-57786080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 79

               
               
               Conread position:243-674
               
               
               Cow position:chr10:31362045-31362470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 65

               
               
               Conread position:243-674
               
               
               Cow position:chr10:37818382-37818820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 73

               
               
               Conread position:245-412
               
               
               Cow position:chr10:7089512-7089352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:245-422
               
               
               Cow position:chr10:12253264-12253435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):132, 22

               
               
               Conread position:245-429
               
               
               Cow position:chr10:24862930-24863118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):7, 88

               
               
               Conread position:245-455
               
               
               Cow position:chr10:6516875-6516658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):73, 165

               
               
               Conread position:245-457
               
               
               Cow position:chr10:17389027-17388799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):67, 125

               
               
               Conread position:245-462
               
               
               Cow position:chr10:49634237-49634020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):169, 65

               
               
               Conread position:245-495
               
               
               Cow position:chr10:31803306-31803563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):24, 63

               
               
               Conread position:245-509
               
               
               Cow position:chr10:10138032-10137773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:193
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):173, 68

               
               
               Conread position:245-519
               
               
               Cow position:chr10:33573075-33573345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):43, 39

               
               
               Conread position:245-528
               
               
               Cow position:chr10:39124307-39124017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:213
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):80, 171

               
               
               Conread position:245-538
               
               
               Cow position:chr10:6664202-6663903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 24

               
               
               Conread position:245-592
               
               
               Cow position:chr10:24422000-24422340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:253
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):174, 80

               
               
               Conread position:245-617
               
               
               Cow position:chr10:46195952-46195574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:264
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):93, 41

               
               
               Conread position:245-650
               
               
               Cow position:chr10:28152224-28152619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 29

               
               
               Conread position:245-671
               
               
               Cow position:chr10:50533706-50534130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):218, 40

               
               
               Conread position:245-672
               
               
               Cow position:chr10:32417515-32417106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:291
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):190, 28

               
               
               Conread position:245-673
               
               
               Cow position:chr10:5543077-5543508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 157

               
               
               Conread position:245-673
               
               
               Cow position:chr10:35862060-35862489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 20

               
               
               Conread position:245-673
               
               
               Cow position:chr10:39387620-39387200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 75

               
               
               Conread position:245-673
               
               
               Cow position:chr10:48462175-48462597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 47

               
               
               Conread position:245-674
               
               
               Cow position:chr10:10469135-10468718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 24

               
               
               Conread position:245-675
               
               
               Cow position:chr10:4311333-4310927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 42

               
               
               Conread position:246-431
               
               
               Cow position:chr10:58638176-58637997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):169, 28

               
               
               Conread position:246-444
               
               
               Cow position:chr10:3276139-3275947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):172, 64

               
               
               Conread position:246-450
               
               
               Cow position:chr10:11112793-11112589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):95, 14

               
               
               Conread position:246-452
               
               
               Cow position:chr10:2857218-2857011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):20, 88

               
               
               Conread position:246-477
               
               
               Cow position:chr10:54776717-54776485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):80, 19

               
               
               Conread position:246-551
               
               
               Cow position:chr10:7383446-7383745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:226
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):168, 81

               
               
               Conread position:246-670
               
               
               Cow position:chr10:55122980-55122534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 39

               
               
               Conread position:246-673
               
               
               Cow position:chr10:59572063-59571639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 63

               
               
               Conread position:248-673
               
               
               Cow position:chr10:40420686-40421104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 62

               
               
               Conread position:249-409
               
               
               Cow position:chr10:29713318-29713153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):77, 152

               
               
               Conread position:249-413
               
               
               Cow position:chr10:17065813-17065650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):72, 48

               
               
               Conread position:249-521
               
               
               Cow position:chr10:30216549-30216814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):168, 85

               
               
               Conread position:249-522
               
               
               Cow position:chr10:33084261-33084544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 175

               
               
               Conread position:249-665
               
               
               Cow position:chr10:35867849-35868252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 184

               
               
               Conread position:249-671
               
               
               Cow position:chr10:25699829-25699406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 193

               
               
               Conread position:249-672
               
               
               Cow position:chr10:49923198-49923613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:292
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):71, 193

               
               
               Conread position:249-673
               
               
               Cow position:chr10:721458-721040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 36

               
               
               Conread position:249-673
               
               
               Cow position:chr10:18042350-18041926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 24

               
               
               Conread position:249-673
               
               
               Cow position:chr10:30460836-30460386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 188

               
               
               Conread position:249-698
               
               
               Cow position:chr10:54731192-54730729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 142

               
               
               Conread position:250-411
               
               
               Cow position:chr10:36864526-36864374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:250-468
               
               
               Cow position:chr10:23341060-23340853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):85, 140

               
               
               Conread position:250-469
               
               
               Cow position:chr10:41116067-41115851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):168, 56

               
               
               Conread position:250-472
               
               
               Cow position:chr10:23071575-23071802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:250-475
               
               
               Cow position:chr10:17150039-17149820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):163, 36

               
               
               Conread position:250-596
               
               
               Cow position:chr10:52695560-52695914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 84

               
               
               Conread position:250-672
               
               
               Cow position:chr10:24753303-24752898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):166, 35

               
               
               Conread position:250-674
               
               
               Cow position:chr10:21657579-21657160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 41

               
               
               Conread position:250-674
               
               
               Cow position:chr10:30522897-30523317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 83

               
               
               Conread position:250-674
               
               
               Cow position:chr10:42746077-42745652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 26

               
               
               Conread position:250-674
               
               
               Cow position:chr10:49168861-49169317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 35

               
               
               Conread position:251-473
               
               
               Cow position:chr10:30929719-30929947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:174
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):173, 60

               
               
               Conread position:251-480
               
               
               Cow position:chr10:55319659-55319432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):93, 68

               
               
               Conread position:251-667
               
               
               Cow position:chr10:33195211-33194768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:304
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):77, 286

               
               
               Conread position:251-667
               
               
               Cow position:chr10:57142038-57142473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 189

               
               
               Conread position:251-671
               
               
               Cow position:chr10:10985346-10985752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:283
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):276, 35

               
               
               Conread position:251-671
               
               
               Cow position:chr10:50182888-50183304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):223, 73

               
               
               Conread position:252-405
               
               
               Cow position:chr10:4329828-4329985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:252-422
               
               
               Cow position:chr10:37507987-37508153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):166, 57

               
               
               Conread position:252-667
               
               
               Cow position:chr10:42637394-42636971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:294
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):57, 16

               
               
               Conread position:252-673
               
               
               Cow position:chr10:33914903-33915310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:278
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):166, 67

               
               
               Conread position:252-675
               
               
               Cow position:chr10:46830034-46829614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:288
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):86, 120

               
               
               Conread position:253-456
               
               
               Cow position:chr10:62454203-62454410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):75, 30

               
               
               Conread position:253-464
               
               
               Cow position:chr10:21564913-21564700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):63, 113

               
               
               Conread position:253-505
               
               
               Cow position:chr10:13918108-13918343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):228, 23

               
               
               Conread position:253-521
               
               
               Cow position:chr10:46262348-46262081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):70, 98

               
               
               Conread position:253-596
               
               
               Cow position:chr10:61982554-61982208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:246
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):66, 84

               
               
               Conread position:253-673
               
               
               Cow position:chr10:40147466-40147894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:278
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):72, 105

               
               
               Conread position:253-673
               
               
               Cow position:chr10:48257112-48257538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 42

               
               
               Conread position:253-673
               
               
               Cow position:chr10:53674991-53674564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 32

               
               
               Conread position:253-674
               
               
               Cow position:chr10:19895558-19895139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 53

               
               
               Conread position:254-412
               
               
               Cow position:chr10:4170523-4170687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):54, 97

               
               
               Conread position:254-429
               
               
               Cow position:chr10:49382800-49382970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):151, 66

               
               
               Conread position:254-431
               
               
               Cow position:chr10:17448046-17448215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):164, 19

               
               
               Conread position:254-469
               
               
               Cow position:chr10:48619851-48620065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):46, 31

               
               
               Conread position:254-595
               
               
               Cow position:chr10:37534752-37534420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):16, 71

               
               
               Conread position:254-674
               
               
               Cow position:chr10:56828157-56828581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 80

               
               
               Conread position:254-688
               
               
               Cow position:chr10:5503185-5502748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 108

               
               
               Conread position:255-670
               
               
               Cow position:chr10:7366630-7367042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 52

               
               
               Conread position:257-478
               
               
               Cow position:chr10:17691077-17691290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):64, 19

               
               
               Conread position:257-522
               
               
               Cow position:chr10:15309249-15309510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 19

               
               
               Conread position:257-619
               
               
               Cow position:chr10:24276570-24276940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 19

               
               
               Conread position:257-642
               
               
               Cow position:chr10:45871678-45871286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 195

               
               
               Conread position:257-672
               
               
               Cow position:chr10:23912352-23912754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 17

               
               
               Conread position:257-673
               
               
               Cow position:chr10:9675313-9675715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 17

               
               
               Conread position:257-673
               
               
               Cow position:chr10:26577715-26577291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:289
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):61, 246

               
               
               Conread position:257-674
               
               
               Cow position:chr10:1423992-1423571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:284
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):81, 179

               
               
               Conread position:257-675
               
               
               Cow position:chr10:33666002-33665579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 58

               
               
               Conread position:258-551
               
               
               Cow position:chr10:44421743-44422042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):21, 52

               
               
               Conread position:258-673
               
               
               Cow position:chr10:6505511-6505102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 69

               
               
               Conread position:259-441
               
               
               Cow position:chr10:14188454-14188637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):159, 69

               
               
               Conread position:259-505
               
               
               Cow position:chr10:47182408-47182656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):67, 98

               
               
               Conread position:259-673
               
               
               Cow position:chr10:1488986-1488590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 25

               
               
               Conread position:259-673
               
               
               Cow position:chr10:35802206-35802628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 14

               
               
               Conread position:260-518
               
               
               Cow position:chr10:46575663-46575404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:193
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):155, 25

               
               
               Conread position:260-536
               
               
               Cow position:chr10:68572513-68572232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):40, 26

               
               
               Conread position:261-602
               
               
               Cow position:chr10:48512922-48513275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):52, 102

               
               
               Conread position:261-667
               
               
               Cow position:chr10:10720516-10720929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 18

               
               
               Conread position:262-428
               
               
               Cow position:chr10:59159408-59159229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:262-492
               
               
               Cow position:chr10:58488357-58488136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):157, 58

               
               
               Conread position:262-673
               
               
               Cow position:chr10:32503586-32503191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:285
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):58, 177

               
               
               Conread position:263-430
               
               
               Cow position:chr10:17077587-17077753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):142, 71

               
               
               Conread position:263-494
               
               
               Cow position:chr10:15225121-15224885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):10, 156

               
               
               Conread position:263-528
               
               
               Cow position:chr10:10026490-10026245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):11, 48

               
               
               Conread position:265-470
               
               
               Cow position:chr10:2695111-2694910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):153, 11

               
               
               Conread position:265-675
               
               
               Cow position:chr10:24096217-24096640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 98

               
               
               Conread position:265-675
               
               
               Cow position:chr10:38942587-38942165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:286
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):66, 214

               
               
               Conread position:270-673
               
               
               Cow position:chr10:28395159-28395551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 57

               
               
               Conread position:272-587
               
               
               Cow position:chr10:37295526-37295839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 197

               
               
               Conread position:272-673
               
               
               Cow position:chr10:21422017-21422412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):201, 57

               
               
               Conread position:272-673
               
               
               Cow position:chr10:52278869-52278462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 61

               
               
               Conread position:280-469
               
               
               Cow position:chr10:46886287-46886103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:280-539
               
               
               Cow position:chr10:10750109-10750377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):45, 156

               
               
               Conread position:281-673
               
               
               Cow position:chr10:49455956-49456335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:271
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):15, 54

               
               
               Conread position:287-673
               
               
               Cow position:chr10:6235319-6235682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:265
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):132, 40

               
               
               Conread position:287-673
               
               
               Cow position:chr10:6408086-6407697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):127, 26

               
               
               Conread position:294-458
               
               
               Cow position:chr10:24574281-24574438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):111, 27

               
               
               Conread position:295-672
               
               
               Cow position:chr10:65133064-65132701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:270
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):124, 26

               
               
               Conread position:297-671
               
               
               Cow position:chr10:11213235-11212855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 134

               
               
               Conread position:298-558
               
               
               Cow position:chr10:49253486-49253225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):30, 120

               
               
               Conread position:298-585
               
               
               Cow position:chr10:4164388-4164093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):126, 29

               
               
               Conread position:300-671
               
               
               Cow position:chr10:63628304-63627956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:256
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):113, 23

               
               
               Conread position:301-616
               
               
               Cow position:chr10:37913064-37913387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:234
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):20, 141

               
               
               Conread position:302-575
               
               
               Cow position:chr10:16683688-16683978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):15, 132

               
               
               Conread position:302-670
               
               
               Cow position:chr10:36002316-36001948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 116

               
               
               Conread position:302-673
               
               
               Cow position:chr10:47789137-47788785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):14, 120

               
               
               Conread position:302-673
               
               
               Cow position:chr10:58259409-58259774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 56

               
               
               Conread position:304-673
               
               
               Cow position:chr10:39109903-39110253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:260
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):71, 111

               
               
               Conread position:307-675
               
               
               Cow position:chr10:31791147-31791521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 120

               
               
               Conread position:307-696
               
               
               Cow position:chr10:29252275-29251881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 87

               
               
               Conread position:308-506
               
               
               Cow position:chr10:53405581-53405384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):106, 25

               
               
               Conread position:308-540
               
               
               Cow position:chr10:15426973-15427192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:308-672
               
               
               Cow position:chr10:15115721-15115357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 12

               
               
               Conread position:308-674
               
               
               Cow position:chr10:59675142-59675513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:259
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):17, 130

               
               
               Conread position:310-481
               
               
               Cow position:chr10:13197723-13197897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):13, 26

               
               
               Conread position:310-484
               
               
               Cow position:chr10:24902878-24903053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:145
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):106, 23

               
               
               Conread position:310-514
               
               
               Cow position:chr10:23583464-23583669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):108, 36

               
               
               Conread position:310-615
               
               
               Cow position:chr10:35778796-35779106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 5

               
               
               Conread position:310-625
               
               
               Cow position:chr10:24375650-24375338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 23

               
               
               Conread position:310-667
               
               
               Cow position:chr10:61839689-61839347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:256
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):157, 23

               
               
               Conread position:310-667
               
               
               Cow position:chr10:67581393-67581037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:247
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):16, 130

               
               
               Conread position:310-669
               
               
               Cow position:chr10:11248086-11247719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:252
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):83, 127

               
               
               Conread position:310-671
               
               
               Cow position:chr10:50609660-50609282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 23

               
               
               Conread position:310-672
               
               
               Cow position:chr10:31373980-31374364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:271
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):19, 49

               
               
               Conread position:310-673
               
               
               Cow position:chr10:77476-77131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 23

               
               
               Conread position:310-673
               
               
               Cow position:chr10:34174870-34175255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 25

               
               
               Conread position:310-673
               
               
               Cow position:chr10:59663864-59664222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 38

               
               
               Conread position:310-674
               
               
               Cow position:chr10:668972-668622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:262
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):66, 23

               
               
               Conread position:310-684
               
               
               Cow position:chr10:24732411-24732040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 24

               
               
               Conread position:311-528
               
               
               Cow position:chr10:49947776-49947990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):103, 25

               
               
               Conread position:311-609
               
               
               Cow position:chr10:28429395-28429692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):20, 122

               
               
               Conread position:311-670
               
               
               Cow position:chr10:34660137-34660475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):103, 22

               
               
               Conread position:311-670
               
               
               Cow position:chr10:43509105-43508739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 22

               
               
               Conread position:311-671
               
               
               Cow position:chr10:23886353-23886705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 39

               
               
               Conread position:311-671
               
               
               Cow position:chr10:29919733-29920089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 22

               
               
               Conread position:311-671
               
               
               Cow position:chr10:59843803-59844180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:265
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):108, 22

               
               
               Conread position:311-672
               
               
               Cow position:chr10:24022178-24022538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 22

               
               
               Conread position:311-673
               
               
               Cow position:chr10:26209142-26209520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 22

               
               
               Conread position:313-504
               
               
               Cow position:chr10:56180668-56180476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):8, 21

               
               
               Conread position:313-518
               
               
               Cow position:chr10:41760218-41760426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):105, 20

               
               
               Conread position:313-579
               
               
               Cow position:chr10:67288394-67288127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):105, 20

               
               
               Conread position:313-602
               
               
               Cow position:chr10:19549385-19549681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:217
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):107, 23

               
               
               Conread position:313-672
               
               
               Cow position:chr10:20132425-20132785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 24

               
               
               Conread position:313-673
               
               
               Cow position:chr10:30360622-30360271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 21

               
               
               Conread position:314-469
               
               
               Cow position:chr10:26631510-26631355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):104, 70

               
               
               Conread position:314-536
               
               
               Cow position:chr10:33116849-33117070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):104, 19

               
               
               Conread position:314-570
               
               
               Cow position:chr10:6543827-6543563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 18

               
               
               Conread position:314-577
               
               
               Cow position:chr10:2538194-2537928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):12, 31

               
               
               Conread position:314-671
               
               
               Cow position:chr10:6530289-6529942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:253
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):100, 120

               
               
               Conread position:314-671
               
               
               Cow position:chr10:52046974-52046606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 216

               
               
               Conread position:314-673
               
               
               Cow position:chr10:20897392-20897044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 70

               
               
               Conread position:315-624
               
               
               Cow position:chr10:29339294-29339598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):168, 104

               
               
               Conread position:315-697
               
               
               Cow position:chr10:54477199-54476830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 39

               
               
               Conread position:316-539
               
               
               Cow position:chr10:8449605-8449374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):78, 11

               
               
               Conread position:316-607
               
               
               Cow position:chr10:47651401-47651106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 149

               
               
               Conread position:316-640
               
               
               Cow position:chr10:6665457-6665772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:229
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):262, 98

               
               
               Conread position:316-671
               
               
               Cow position:chr10:28670718-28671079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 16

               
               
               Conread position:316-673
               
               
               Cow position:chr10:24132723-24133079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 17

               
               
               Conread position:316-674
               
               
               Cow position:chr10:15871772-15872123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 17

               
               
               Conread position:316-687
               
               
               Cow position:chr10:3999011-3998632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 107

               
               
               Conread position:317-670
               
               
               Cow position:chr10:30440946-30441302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:248
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):112, 139

               
               
               Conread position:317-673
               
               
               Cow position:chr10:59151764-59152122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 107

               
               
               Conread position:318-670
               
               
               Cow position:chr10:10043008-10043350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 95

               
               
               Conread position:318-673
               
               
               Cow position:chr10:28104980-28105331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 121

               
               
               Conread position:320-504
               
               
               Cow position:chr10:52827501-52827679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):98, 63

               
               
               Conread position:320-506
               
               
               Cow position:chr10:973230-973048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):154, 16

               
               
               Conread position:320-510
               
               
               Cow position:chr10:54819362-54819170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):155, 14

               
               
               Conread position:320-531
               
               
               Cow position:chr10:6199119-6198901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):19, 44

               
               
               Conread position:320-671
               
               
               Cow position:chr10:27828418-27828082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 17

               
               
               Conread position:320-673
               
               
               Cow position:chr10:17176129-17175775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 13

               
               
               Conread position:320-674
               
               
               Cow position:chr10:2849445-2849094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 13

               
               
               Conread position:321-514
               
               
               Cow position:chr10:15425145-15424954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):147, 12

               
               
               Conread position:321-673
               
               
               Cow position:chr10:15462597-15462240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 15

               
               
               Conread position:321-673
               
               
               Cow position:chr10:24745215-24744869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 35

               
               
               Conread position:322-613
               
               
               Cow position:chr10:51942883-51942588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:216
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):107, 11

               
               
               Conread position:322-629
               
               
               Cow position:chr10:59164013-59164311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):196, 11

               
               
               Conread position:323-528
               
               
               Cow position:chr10:22633532-22633737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):95, 10

               
               
               Conread position:323-594
               
               
               Cow position:chr10:28776444-28776171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):91, 11

               
               
               Conread position:323-621
               
               
               Cow position:chr10:37173353-37173660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):80, 10

               
               
               Conread position:323-672
               
               
               Cow position:chr10:51696834-51696495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 11

               
               
               Conread position:324-474
               
               
               Cow position:chr10:5739185-5739335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):94, 114

               
               
               Conread position:324-475
               
               
               Cow position:chr10:31400267-31400112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):94, 111

               
               
               Conread position:324-600
               
               
               Cow position:chr10:58612548-58612807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):91, 41

               
               
               Conread position:325-602
               
               
               Cow position:chr10:68829192-68829472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):22, 32

               
               
               Conread position:325-673
               
               
               Cow position:chr10:9083393-9083040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):95, 31

               
               
               Conread position:327-645
               
               
               Cow position:chr10:51861988-51862299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):91, 107

               
               
               Conread position:327-663
               
               
               Cow position:chr10:31779178-31779517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 111

               
               
               Conread position:327-670
               
               
               Cow position:chr10:29279536-29279187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:250
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):108, 92

               
               
               Conread position:327-673
               
               
               Cow position:chr10:12315237-12314910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:253
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):18, 55

               
               
               Conread position:327-673
               
               
               Cow position:chr10:32584002-32583657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:246
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):89, 108

               
               
               Conread position:327-684
               
               
               Cow position:chr10:69559014-69558657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:235
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):151, 173

               
               
               Conread position:328-480
               
               
               Cow position:chr10:48898755-48898602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):95, 91

               
               
               Conread position:328-509
               
               
               Cow position:chr10:37768392-37768207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):85, 18

               
               
               Conread position:328-535
               
               
               Cow position:chr10:12100454-12100669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):81, 113

               
               
               Conread position:328-556
               
               
               Cow position:chr10:58935080-58935311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):82, 54

               
               
               Conread position:328-565
               
               
               Cow position:chr10:42451167-42451392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:179
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):42, 62

               
               
               Conread position:328-670
               
               
               Cow position:chr10:37668067-37668416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 31

               
               
               Conread position:328-673
               
               
               Cow position:chr10:9341646-9341996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:238
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):38, 50

               
               
               Conread position:328-673
               
               
               Cow position:chr10:52113584-52113924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 66

               
               
               Conread position:329-482
               
               
               Cow position:chr10:29349702-29349547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):89, 137

               
               
               Conread position:329-600
               
               
               Cow position:chr10:50134716-50134996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 10

               
               
               Conread position:330-551
               
               
               Cow position:chr10:69216450-69216236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):94, 73

               
               
               Conread position:330-673
               
               
               Cow position:chr10:49045926-49045585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:253
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):146, 69

               
               
               Conread position:331-588
               
               
               Cow position:chr10:46184826-46184572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:331-644
               
               
               Cow position:chr10:38513261-38512944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 51

               
               
               Conread position:331-673
               
               
               Cow position:chr10:1749671-1749316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 83

               
               
               Conread position:332-672
               
               
               Cow position:chr10:65423819-65424169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:254
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):83, 24

               
               
               Conread position:336-630
               
               
               Cow position:chr10:55930279-55929981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):93, 177

               
               
               Conread position:336-673
               
               
               Cow position:chr10:13390966-13391312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 102

               
               
               Conread position:336-673
               
               
               Cow position:chr10:36896486-36896146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 137

               
               
               Conread position:337-466
               
               
               Cow position:chr10:34700711-34700580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):81, 98

               
               
               Conread position:337-502
               
               
               Cow position:chr10:17293351-17293522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):77, 98

               
               
               Conread position:337-510
               
               
               Cow position:chr10:517363-517195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:337-605
               
               
               Cow position:chr10:22433830-22434114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):78, 13

               
               
               Conread position:337-630
               
               
               Cow position:chr10:3362707-3362403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:224
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):81, 196

               
               
               Conread position:337-637
               
               
               Cow position:chr10:33732792-33733092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 52

               
               
               Conread position:337-666
               
               
               Cow position:chr10:22321603-22321265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:241
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):81, 97

               
               
               Conread position:337-673
               
               
               Cow position:chr10:11221783-11221451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):82, 104

               
               
               Conread position:337-673
               
               
               Cow position:chr10:24763563-24763220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 51

               
               
               Conread position:337-674
               
               
               Cow position:chr10:45770124-45769780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 30

               
               
               Conread position:337-674
               
               
               Cow position:chr10:53357976-53357636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 50

               
               
               Conread position:337-675
               
               
               Cow position:chr10:22527821-22528162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 98

               
               
               Conread position:337-723
               
               
               Cow position:chr10:20997207-20997585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:266
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):86, 82

               
               
               Conread position:338-672
               
               
               Cow position:chr10:23936556-23936225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 77

               
               
               Conread position:338-673
               
               
               Cow position:chr10:41941486-41941839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 6

               
               
               Conread position:339-535
               
               
               Cow position:chr10:533610-533409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):76, 96

               
               
               Conread position:339-671
               
               
               Cow position:chr10:8923358-8923017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 96

               
               
               Conread position:340-641
               
               
               Cow position:chr10:46492917-46493230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:227
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):84, 79

               
               
               Conread position:340-645
               
               
               Cow position:chr10:47412029-47412339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 67

               
               
               Conread position:343-605
               
               
               Cow position:chr10:24781263-24780993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):71, 88

               
               
               Conread position:344-492
               
               
               Cow position:chr10:48282478-48282632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):74, 91

               
               
               Conread position:347-673
               
               
               Cow position:chr10:8412982-8413309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:233
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):72, 9

               
               
               Conread position:347-673
               
               
               Cow position:chr10:38725725-38725401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:243
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):122, 80

               
               
               Conread position:349-466
               
               
               Cow position:chr10:24151822-24151937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:93
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:352-603
               
               
               Cow position:chr10:42892905-42893157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 63

               
               
               Conread position:353-650
               
               
               Cow position:chr10:10964052-10963751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:218
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):61, 82

               
               
               Conread position:354-605
               
               
               Cow position:chr10:13617590-13617835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):52, 62

               
               
               Conread position:354-605
               
               
               Cow position:chr10:37645123-37644880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):64, 118

               
               
               Conread position:354-668
               
               
               Cow position:chr10:29588776-29589095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:232
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):65, 85

               
               
               Conread position:354-673
               
               
               Cow position:chr10:21462306-21461982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 61

               
               
               Conread position:354-687
               
               
               Cow position:chr10:35887333-35887679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):65, 182

               
               
               Conread position:357-578
               
               
               Cow position:chr10:47725007-47724780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):68, 62

               
               
               Conread position:357-590
               
               
               Cow position:chr10:41254513-41254750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):53, 59

               
               
               Conread position:357-613
               
               
               Cow position:chr10:24307863-24308115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):38, 112

               
               
               Conread position:357-673
               
               
               Cow position:chr10:9444962-9445272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:226
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):170, 15

               
               
               Conread position:357-673
               
               
               Cow position:chr10:51314067-51313731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):59, 44

               
               
               Conread position:363-674
               
               
               Cow position:chr10:24548304-24547998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:232
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):117, 49

               
               
               Conread position:364-672
               
               
               Cow position:chr10:35767036-35767336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):163, 48

               
               
               Conread position:365-624
               
               
               Cow position:chr10:39303794-39304062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 54

               
               
               Conread position:367-599
               
               
               Cow position:chr10:747520-747276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:368-671
               
               
               Cow position:chr10:12919307-12919598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:222
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):115, 47

               
               
               Conread position:368-675
               
               
               Cow position:chr10:64876569-64876256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:232
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):51, 70

               
               
               Conread position:373-675
               
               
               Cow position:chr10:29360963-29360647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:228
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):57, 162

               
               
               Conread position:374-673
               
               
               Cow position:chr10:33891040-33891346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):50, 44

               
               
               Conread position:375-624
               
               
               Cow position:chr10:45679060-45678803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):54, 133

               
               
               Conread position:380-673
               
               
               Cow position:chr10:14098295-14098579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):105, 39

               
               
               Conread position:381-660
               
               
               Cow position:chr10:32029796-32030070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):54, 47

               
               
               Conread position:387-676
               
               
               Cow position:chr10:35857031-35857316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 44

               
               
               Conread position:394-674
               
               
               Cow position:chr10:1088053-1087759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 45

               
               
               Conread position:398-584
               
               
               Cow position:chr10:35856337-35856523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):21, 33

               
               
               Conread position:399-651
               
               
               Cow position:chr10:25882430-25882189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):85, 14

               
               
               Conread position:399-673
               
               
               Cow position:chr10:6173376-6173101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 39

               
               
               Conread position:401-672
               
               
               Cow position:chr10:21037321-21037048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:202
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):83, 12

               
               
               Conread position:402-673
               
               
               Cow position:chr10:17584021-17584288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):16, 36

               
               
               Conread position:402-673
               
               
               Cow position:chr10:69567864-69567595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):28, 17

               
               
               Conread position:404-687
               
               
               Cow position:chr10:33867385-33867653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):15, 34

               
               
               Conread position:407-675
               
               
               Cow position:chr10:47165876-47165617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):30, 8

               
               
               Conread position:412-672
               
               
               Cow position:chr10:19094649-19094390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):73, 24

               
               
               Conread position:415-659
               
               
               Cow position:chr10:6986447-6986204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):63, 20

               
               
               Conread position:415-675
               
               
               Cow position:chr10:55097697-55097942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):15, 55

               
               
               Conread position:415-676
               
               
               Cow position:chr10:5607646-5607382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:205
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):15, 9

               
               
               Conread position:417-674
               
               
               Cow position:chr10:20399199-20398939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):58, 34

               
               
               Conread position:423-673
               
               
               Cow position:chr10:37528610-37528864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:194
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):7, 100

               
               
               Conread position:424-605
               
               
               Cow position:chr10:3985419-3985239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):57, 11

               
               
               Conread position:425-673
               
               
               Cow position:chr10:48388281-48388530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):41, 10

               
               
               Conread position:434-671
               
               
               Cow position:chr10:24971629-24971856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):49, 89

               
               
               Conread position:434-673
               
               
               Cow position:chr10:14975813-14976051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):50, 15

               
               
               Conread position:434-673
               
               
               Cow position:chr10:20735683-20735449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:184
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):47, 35

               
               
               Conread position:434-674
               
               
               Cow position:chr10:31266351-31266588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:189
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):21, 51

               
               
               Conread position:436-672
               
               
               Cow position:chr10:17983163-17982925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):91, 47

               
               
               Conread position:436-672
               
               
               Cow position:chr10:20505525-20505282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):33, 90

               
               
               Conread position:436-673
               
               
               Cow position:chr10:25045709-25045941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):29, 42

               
               
               Conread position:438-671
               
               
               Cow position:chr10:50200689-50200456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):30, 44

               
               
               Conread position:439-687
               
               
               Cow position:chr10:5113552-5113313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):108, 68

               
               
               Conread position:440-673
               
               
               Cow position:chr10:20447072-20446841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):36, 21

               
               
               Conread position:446-606
               
               
               Cow position:chr10:1201906-1201739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):40, 25

               
               
               Conread position:446-673
               
               
               Cow position:chr10:24871860-24871630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 77

               
               
               Conread position:449-667
               
               
               Cow position:chr10:1719558-1719780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):42, 72

               
               
               Conread position:449-673
               
               
               Cow position:chr10:35026446-35026221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):35, 76

               
               
               Conread position:450-674
               
               
               Cow position:chr10:888890-888666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):21, 34

               
               
               Conread position:461-673
               
               
               Cow position:chr10:8077189-8077410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):11, 63

               
               
               Conread position:466-634
               
               
               Cow position:chr10:32174681-32174508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):8, 58

               
               
               Conread position:471-675
               
               
               Cow position:chr10:48377694-48377907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:174
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):13, 51

               
               
               Conread position:485-673
               
               
               Cow position:chr10:8923868-8923676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:154
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:485-675
               
               
               Cow position:chr10:57736232-57736425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:155
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):54, 95

               
               
               Conread position:498-671
               
               
               Cow position:chr10:14639446-14639612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:162-422
               
               
               Cow position:chr11:21468942-21468697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:162-671
               
               
               Cow position:chr11:77319669-77319172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 21

               
               
               Conread position:204-673
               
               
               Cow position:chr11:53778843-53778359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 238

               
               
               Conread position:205-645
               
               
               Cow position:chr11:29960512-29960079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 61

               
               
               Conread position:213-474
               
               
               Cow position:chr11:18447289-18447544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):30, 7

               
               
               Conread position:215-675
               
               
               Cow position:chr11:68909640-68910103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 142

               
               
               Conread position:218-422
               
               
               Cow position:chr11:23278755-23278963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):25, 120

               
               
               Conread position:226-507
               
               
               Cow position:chr11:84890527-84890807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):15, 83

               
               
               Conread position:228-539
               
               
               Cow position:chr11:70206513-70206205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:228
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):20, 71

               
               
               Conread position:228-673
               
               
               Cow position:chr11:67600974-67600514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 21

               
               
               Conread position:229-382
               
               
               Cow position:chr11:9691207-9691046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):15, 53

               
               
               Conread position:229-425
               
               
               Cow position:chr11:63498933-63499131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):10, 187

               
               
               Conread position:230-673
               
               
               Cow position:chr11:36647525-36647107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 53

               
               
               Conread position:231-392
               
               
               Cow position:chr11:1842150-1841995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:232-674
               
               
               Cow position:chr11:43524802-43524368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:298
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):108, 20

               
               
               Conread position:233-405
               
               
               Cow position:chr11:8421933-8422099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:233-417
               
               
               Cow position:chr11:4621245-4621424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:233-616
               
               
               Cow position:chr11:41215925-41215547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:279
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):62, 52

               
               
               Conread position:233-674
               
               
               Cow position:chr11:48932397-48932838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 185

               
               
               Conread position:234-405
               
               
               Cow position:chr11:63484132-63483961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):9, 100

               
               
               Conread position:234-409
               
               
               Cow position:chr11:53651831-53651655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):94, 42

               
               
               Conread position:234-412
               
               
               Cow position:chr11:30485850-30485663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:234-422
               
               
               Cow position:chr11:30322304-30322492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):94, 18

               
               
               Conread position:234-422
               
               
               Cow position:chr11:31326209-31326007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):75, 13

               
               
               Conread position:234-422
               
               
               Cow position:chr11:42206608-42206422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):9, 40

               
               
               Conread position:234-422
               
               
               Cow position:chr11:79666072-79666261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):90, 18

               
               
               Conread position:234-422
               
               
               Cow position:chr11:86895562-86895377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):61, 16

               
               
               Conread position:234-425
               
               
               Cow position:chr11:30986827-30986637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):171, 94

               
               
               Conread position:234-431
               
               
               Cow position:chr11:21830021-21830220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):101, 18

               
               
               Conread position:234-442
               
               
               Cow position:chr11:56115127-56114918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):42, 13

               
               
               Conread position:234-466
               
               
               Cow position:chr11:37424956-37425186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):38, 107

               
               
               Conread position:234-470
               
               
               Cow position:chr11:84977182-84977408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):15, 41

               
               
               Conread position:234-475
               
               
               Cow position:chr11:20205667-20205905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):180, 88

               
               
               Conread position:234-479
               
               
               Cow position:chr11:57608276-57608511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:234-481
               
               
               Cow position:chr11:67312978-67312720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):14, 41

               
               
               Conread position:234-506
               
               
               Cow position:chr11:33409076-33409346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):184, 16

               
               
               Conread position:234-516
               
               
               Cow position:chr11:62812761-62813045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 40

               
               
               Conread position:234-520
               
               
               Cow position:chr11:53817045-53816759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):92, 18

               
               
               Conread position:234-521
               
               
               Cow position:chr11:42183231-42182948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):9, 165

               
               
               Conread position:234-521
               
               
               Cow position:chr11:82740682-82740408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):180, 15

               
               
               Conread position:234-522
               
               
               Cow position:chr11:2327879-2327585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):67, 18

               
               
               Conread position:234-531
               
               
               Cow position:chr11:5217270-5217576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):67, 18

               
               
               Conread position:234-531
               
               
               Cow position:chr11:42067056-42066750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:220
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):9, 285

               
               
               Conread position:234-548
               
               
               Cow position:chr11:27907961-27907667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):66, 60

               
               
               Conread position:234-548
               
               
               Cow position:chr11:81167841-81168158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:230
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):92, 18

               
               
               Conread position:234-556
               
               
               Cow position:chr11:67615062-67615382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 15

               
               
               Conread position:234-576
               
               
               Cow position:chr11:71390384-71390723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:254
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):180, 15

               
               
               Conread position:234-583
               
               
               Cow position:chr11:81134979-81135328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:232
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):183, 13

               
               
               Conread position:234-590
               
               
               Cow position:chr11:8544829-8545186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 19

               
               
               Conread position:234-621
               
               
               Cow position:chr11:68913333-68912941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 18

               
               
               Conread position:234-630
               
               
               Cow position:chr11:36286895-36286488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 22

               
               
               Conread position:234-630
               
               
               Cow position:chr11:65762394-65762807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 24

               
               
               Conread position:234-641
               
               
               Cow position:chr11:28367901-28367480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:279
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):45, 18

               
               
               Conread position:234-646
               
               
               Cow position:chr11:19500614-19501004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 16

               
               
               Conread position:234-663
               
               
               Cow position:chr11:59463450-59463879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:290
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):35, 22

               
               
               Conread position:234-663
               
               
               Cow position:chr11:63065842-63065410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 18

               
               
               Conread position:234-665
               
               
               Cow position:chr11:47899442-47899031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 80

               
               
               Conread position:234-673
               
               
               Cow position:chr11:8988036-8988483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 95

               
               
               Conread position:234-673
               
               
               Cow position:chr11:15285433-15285871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 58

               
               
               Conread position:234-673
               
               
               Cow position:chr11:18699061-18698621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 78

               
               
               Conread position:234-673
               
               
               Cow position:chr11:26535974-26535521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 16

               
               
               Conread position:234-673
               
               
               Cow position:chr11:44032197-44031746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 39

               
               
               Conread position:234-673
               
               
               Cow position:chr11:44819274-44818843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:294
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):196, 51

               
               
               Conread position:234-673
               
               
               Cow position:chr11:53773873-53773419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 19

               
               
               Conread position:234-673
               
               
               Cow position:chr11:84385449-84385898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 39

               
               
               Conread position:234-674
               
               
               Cow position:chr11:23251409-23251858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 19

               
               
               Conread position:234-674
               
               
               Cow position:chr11:74316897-74316451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 93

               
               
               Conread position:234-675
               
               
               Cow position:chr11:19247015-19247451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 18

               
               
               Conread position:234-675
               
               
               Cow position:chr11:40466932-40467379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:295
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):106, 128

               
               
               Conread position:234-675
               
               
               Cow position:chr11:51687546-51687981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:294
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):185, 18

               
               
               Conread position:234-675
               
               
               Cow position:chr11:64029077-64029512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 18

               
               
               Conread position:235-396
               
               
               Cow position:chr11:6784394-6784236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):158, 15

               
               
               Conread position:235-422
               
               
               Cow position:chr11:42084484-42084675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):79, 17

               
               
               Conread position:235-430
               
               
               Cow position:chr11:48315208-48315406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):8, 94

               
               
               Conread position:235-452
               
               
               Cow position:chr11:30894814-30895034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):95, 12

               
               
               Conread position:235-467
               
               
               Cow position:chr11:5218974-5219204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):23, 14

               
               
               Conread position:235-478
               
               
               Cow position:chr11:51195906-51196131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):7, 52

               
               
               Conread position:235-503
               
               
               Cow position:chr11:63866470-63866737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):8, 100

               
               
               Conread position:235-538
               
               
               Cow position:chr11:63998899-63999207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 183

               
               
               Conread position:235-559
               
               
               Cow position:chr11:23407649-23407319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 14

               
               
               Conread position:235-585
               
               
               Cow position:chr11:29677396-29677041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:246
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):99, 18

               
               
               Conread position:235-592
               
               
               Cow position:chr11:30830433-30830791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 39

               
               
               Conread position:235-610
               
               
               Cow position:chr11:13592928-13592543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 18

               
               
               Conread position:235-637
               
               
               Cow position:chr11:77546585-77546201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:272
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):183, 14

               
               
               Conread position:235-652
               
               
               Cow position:chr11:5961496-5961080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:284
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):81, 17

               
               
               Conread position:235-673
               
               
               Cow position:chr11:17859963-17860407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 133

               
               
               Conread position:235-673
               
               
               Cow position:chr11:39115664-39115240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 72

               
               
               Conread position:235-673
               
               
               Cow position:chr11:67345470-67345897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:300
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):91, 17

               
               
               Conread position:235-673
               
               
               Cow position:chr11:75479834-75480280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 17

               
               
               Conread position:235-674
               
               
               Cow position:chr11:50152622-50153073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 203

               
               
               Conread position:236-386
               
               
               Cow position:chr11:2830844-2830694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):87, 13

               
               
               Conread position:236-387
               
               
               Cow position:chr11:24551579-24551427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):92, 17

               
               
               Conread position:236-412
               
               
               Cow position:chr11:69676165-69676341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):7, 52

               
               
               Conread position:236-417
               
               
               Cow position:chr11:5176192-5176370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:236-421
               
               
               Cow position:chr11:41278375-41278187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):90, 16

               
               
               Conread position:236-422
               
               
               Cow position:chr11:80007872-80008067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):7, 124

               
               
               Conread position:236-431
               
               
               Cow position:chr11:37099981-37100179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):7, 183

               
               
               Conread position:236-455
               
               
               Cow position:chr11:3896507-3896732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):8, 203

               
               
               Conread position:236-461
               
               
               Cow position:chr11:46427218-46427447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):71, 37

               
               
               Conread position:236-464
               
               
               Cow position:chr11:15369577-15369344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):90, 13

               
               
               Conread position:236-473
               
               
               Cow position:chr11:81763057-81762811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):46, 13

               
               
               Conread position:236-475
               
               
               Cow position:chr11:80639364-80639603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):177, 13

               
               
               Conread position:236-515
               
               
               Cow position:chr11:67911976-67912247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):180, 23

               
               
               Conread position:236-521
               
               
               Cow position:chr11:39060414-39060701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 93

               
               
               Conread position:236-521
               
               
               Cow position:chr11:62742459-62742734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:236-529
               
               
               Cow position:chr11:8584504-8584213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):193, 91

               
               
               Conread position:236-539
               
               
               Cow position:chr11:50472506-50472197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:217
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):73, 17

               
               
               Conread position:236-572
               
               
               Cow position:chr11:5201458-5201805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):87, 13

               
               
               Conread position:236-588
               
               
               Cow position:chr11:30209633-30209992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):11, 41

               
               
               Conread position:236-605
               
               
               Cow position:chr11:6245509-6245124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:276
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):73, 16

               
               
               Conread position:236-613
               
               
               Cow position:chr11:2874591-2874192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:261
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):59, 121

               
               
               Conread position:236-651
               
               
               Cow position:chr11:21728099-21728499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 30

               
               
               Conread position:236-652
               
               
               Cow position:chr11:36194482-36194060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:281
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):173, 16

               
               
               Conread position:236-667
               
               
               Cow position:chr11:65157216-65157655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 203

               
               
               Conread position:236-671
               
               
               Cow position:chr11:19891025-19890630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:301
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:236-673
               
               
               Cow position:chr11:25791504-25791946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 245

               
               
               Conread position:236-673
               
               
               Cow position:chr11:30721289-30720844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:299
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):82, 135

               
               
               Conread position:237-411
               
               
               Cow position:chr11:37042163-37041984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:237-412
               
               
               Cow position:chr11:6319943-6320121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:237-413
               
               
               Cow position:chr11:38223606-38223777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:237-464
               
               
               Cow position:chr11:71345128-71345366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):55, 107

               
               
               Conread position:237-476
               
               
               Cow position:chr11:30964533-30964292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):7, 95

               
               
               Conread position:237-510
               
               
               Cow position:chr11:7013541-7013833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):90, 12

               
               
               Conread position:237-526
               
               
               Cow position:chr11:13863913-13864207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):17, 190

               
               
               Conread position:237-555
               
               
               Cow position:chr11:48660117-48659793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:233
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):180, 16

               
               
               Conread position:237-558
               
               
               Cow position:chr11:21852127-21852445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:229
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):11, 98

               
               
               Conread position:237-577
               
               
               Cow position:chr11:45435263-45434926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):176, 45

               
               
               Conread position:237-605
               
               
               Cow position:chr11:23271818-23272190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):178, 60

               
               
               Conread position:237-605
               
               
               Cow position:chr11:65058425-65058800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:248
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):89, 15

               
               
               Conread position:237-673
               
               
               Cow position:chr11:4052055-4052480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:287
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):75, 15

               
               
               Conread position:237-673
               
               
               Cow position:chr11:10095530-10095090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 17

               
               
               Conread position:237-673
               
               
               Cow position:chr11:38236432-38235990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 15

               
               
               Conread position:237-673
               
               
               Cow position:chr11:42016451-42016892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 25

               
               
               Conread position:237-673
               
               
               Cow position:chr11:61454315-61454788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 188

               
               
               Conread position:237-675
               
               
               Cow position:chr11:14649123-14649568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:299
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):79, 119

               
               
               Conread position:237-693
               
               
               Cow position:chr11:1485673-1486140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:313
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):86, 15

               
               
               Conread position:238-387
               
               
               Cow position:chr11:81340356-81340504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):10, 73

               
               
               Conread position:238-392
               
               
               Cow position:chr11:51683403-51683247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:238-409
               
               
               Cow position:chr11:37565056-37564888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:238-422
               
               
               Cow position:chr11:1980079-1980267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):90, 14

               
               
               Conread position:238-422
               
               
               Cow position:chr11:15366790-15366972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):12, 78

               
               
               Conread position:238-422
               
               
               Cow position:chr11:47412029-47411842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:238-434
               
               
               Cow position:chr11:22884591-22884400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):175, 11

               
               
               Conread position:238-462
               
               
               Cow position:chr11:36521066-36520834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):89, 15

               
               
               Conread position:238-465
               
               
               Cow position:chr11:78820336-78820111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):91, 107

               
               
               Conread position:238-468
               
               
               Cow position:chr11:30172486-30172263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:238-475
               
               
               Cow position:chr11:1932302-1932545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):71, 11

               
               
               Conread position:238-513
               
               
               Cow position:chr11:8437502-8437782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):10, 30

               
               
               Conread position:238-539
               
               
               Cow position:chr11:69978152-69977859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):180, 35

               
               
               Conread position:238-553
               
               
               Cow position:chr11:75285570-75285899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):69, 11

               
               
               Conread position:238-559
               
               
               Cow position:chr11:47310798-47311121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):87, 14

               
               
               Conread position:238-612
               
               
               Cow position:chr11:7874327-7873954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:257
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):76, 120

               
               
               Conread position:238-613
               
               
               Cow position:chr11:64077316-64077696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:254
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):88, 14

               
               
               Conread position:238-618
               
               
               Cow position:chr11:70600641-70601022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:279
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):62, 15

               
               
               Conread position:238-624
               
               
               Cow position:chr11:38334707-38334310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:265
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):62, 11

               
               
               Conread position:238-625
               
               
               Cow position:chr11:49210630-49211021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 113

               
               
               Conread position:238-627
               
               
               Cow position:chr11:19591810-19592205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 14

               
               
               Conread position:238-641
               
               
               Cow position:chr11:5433452-5433046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:268
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):181, 15

               
               
               Conread position:238-667
               
               
               Cow position:chr11:2084332-2083900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 200

               
               
               Conread position:238-667
               
               
               Cow position:chr11:42884599-42885018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:280
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):69, 14

               
               
               Conread position:238-670
               
               
               Cow position:chr11:77745061-77745501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 341

               
               
               Conread position:238-671
               
               
               Cow position:chr11:72871083-72870673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:303
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):72, 11

               
               
               Conread position:238-672
               
               
               Cow position:chr11:30165697-30165256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 14

               
               
               Conread position:238-673
               
               
               Cow position:chr11:35347565-35348011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:295
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):88, 14

               
               
               Conread position:238-673
               
               
               Cow position:chr11:47351521-47351100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:279
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):177, 14

               
               
               Conread position:238-673
               
               
               Cow position:chr11:79728486-79728927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:238-675
               
               
               Cow position:chr11:1380864-1380439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 265

               
               
               Conread position:238-675
               
               
               Cow position:chr11:63519180-63518759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:297
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):179, 20

               
               
               Conread position:239-411
               
               
               Cow position:chr11:26057461-26057638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:239-417
               
               
               Cow position:chr11:40538734-40538557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):57, 14

               
               
               Conread position:239-417
               
               
               Cow position:chr11:63849764-63849945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):87, 115

               
               
               Conread position:239-421
               
               
               Cow position:chr11:44620139-44619956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):79, 34

               
               
               Conread position:239-422
               
               
               Cow position:chr11:23220546-23220363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):177, 58

               
               
               Conread position:239-422
               
               
               Cow position:chr11:66099671-66099862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:239-422
               
               
               Cow position:chr11:77017416-77017242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):175, 75

               
               
               Conread position:239-426
               
               
               Cow position:chr11:64781274-64781084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:239-431
               
               
               Cow position:chr11:25968667-25968861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):87, 121

               
               
               Conread position:239-441
               
               
               Cow position:chr11:58186058-58185865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):194, 71

               
               
               Conread position:239-453
               
               
               Cow position:chr11:71022186-71021969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):45, 59

               
               
               Conread position:239-455
               
               
               Cow position:chr11:69417589-69417370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):89, 196

               
               
               Conread position:239-467
               
               
               Cow position:chr11:62811482-62811252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):85, 96

               
               
               Conread position:239-470
               
               
               Cow position:chr11:28078675-28078455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:239-472
               
               
               Cow position:chr11:41213238-41212992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:239-510
               
               
               Cow position:chr11:1067253-1067532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):89, 14

               
               
               Conread position:239-511
               
               
               Cow position:chr11:21508196-21507913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):68, 14

               
               
               Conread position:239-511
               
               
               Cow position:chr11:35536761-35536497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):179, 35

               
               
               Conread position:239-521
               
               
               Cow position:chr11:16315060-16314772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):79, 115

               
               
               Conread position:239-535
               
               
               Cow position:chr11:59024167-59024468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):71, 156

               
               
               Conread position:239-539
               
               
               Cow position:chr11:7460444-7460733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:208
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):102, 22

               
               
               Conread position:239-540
               
               
               Cow position:chr11:83032863-83032564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:217
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):175, 85

               
               
               Conread position:239-551
               
               
               Cow position:chr11:18425053-18425372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):94, 287

               
               
               Conread position:239-576
               
               
               Cow position:chr11:2575722-2576063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):90, 52

               
               
               Conread position:239-579
               
               
               Cow position:chr11:32693308-32693634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:238
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):71, 29

               
               
               Conread position:239-579
               
               
               Cow position:chr11:80756604-80756946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):191, 46

               
               
               Conread position:239-596
               
               
               Cow position:chr11:26143913-26144278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:261
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):87, 35

               
               
               Conread position:239-604
               
               
               Cow position:chr11:7458094-7458474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):98, 124

               
               
               Conread position:239-605
               
               
               Cow position:chr11:37804366-37804743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 46

               
               
               Conread position:239-609
               
               
               Cow position:chr11:15339241-15338881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:257
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):196, 35

               
               
               Conread position:239-613
               
               
               Cow position:chr11:5075044-5075416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):190, 120

               
               
               Conread position:239-642
               
               
               Cow position:chr11:24438033-24438450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:277
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):87, 115

               
               
               Conread position:239-672
               
               
               Cow position:chr11:27747104-27746665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 82

               
               
               Conread position:239-673
               
               
               Cow position:chr11:12111290-12111721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:310
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):242, 46

               
               
               Conread position:239-673
               
               
               Cow position:chr11:13500196-13499761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 30

               
               
               Conread position:239-673
               
               
               Cow position:chr11:17083127-17083551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 83

               
               
               Conread position:239-673
               
               
               Cow position:chr11:36940408-36940854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:296
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):96, 119

               
               
               Conread position:239-673
               
               
               Cow position:chr11:48650172-48649707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 215

               
               
               Conread position:239-673
               
               
               Cow position:chr11:66041458-66041020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):198, 81

               
               
               Conread position:239-675
               
               
               Cow position:chr11:70382503-70382951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 186

               
               
               Conread position:239-675
               
               
               Cow position:chr11:81143358-81143814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:303
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):143, 88

               
               
               Conread position:239-697
               
               
               Cow position:chr11:13040002-13040442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 30

               
               
               Conread position:240-380
               
               
               Cow position:chr11:63977240-63977101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:240-382
               
               
               Cow position:chr11:62655876-62655735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:240-387
               
               
               Cow position:chr11:70821229-70821081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):88, 113

               
               
               Conread position:240-392
               
               
               Cow position:chr11:73638040-73637886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):86, 130

               
               
               Conread position:240-405
               
               
               Cow position:chr11:81175783-81175615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:240-409
               
               
               Cow position:chr11:15591295-15591460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:240-411
               
               
               Cow position:chr11:11483506-11483325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):80, 173

               
               
               Conread position:240-419
               
               
               Cow position:chr11:18777408-18777594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):81, 170

               
               
               Conread position:240-422
               
               
               Cow position:chr11:71456015-71455823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):67, 184

               
               
               Conread position:240-422
               
               
               Cow position:chr11:79548748-79548937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):35, 101

               
               
               Conread position:240-426
               
               
               Cow position:chr11:41576688-41576873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):86, 46

               
               
               Conread position:240-426
               
               
               Cow position:chr11:74427864-74427675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):86, 120

               
               
               Conread position:240-431
               
               
               Cow position:chr11:60296923-60296720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):60, 45

               
               
               Conread position:240-432
               
               
               Cow position:chr11:85186343-85186534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):81, 27

               
               
               Conread position:240-433
               
               
               Cow position:chr11:46784648-46784466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:240-434
               
               
               Cow position:chr11:74152564-74152766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):65, 105

               
               
               Conread position:240-436
               
               
               Cow position:chr11:36092734-36092931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):154, 55

               
               
               Conread position:240-446
               
               
               Cow position:chr11:79466407-79466187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):67, 206

               
               
               Conread position:240-446
               
               
               Cow position:chr11:84764202-84764012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):173, 23

               
               
               Conread position:240-448
               
               
               Cow position:chr11:63165466-63165673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):173, 84

               
               
               Conread position:240-451
               
               
               Cow position:chr11:2484611-2484822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):85, 26

               
               
               Conread position:240-456
               
               
               Cow position:chr11:32260716-32260500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):60, 124

               
               
               Conread position:240-466
               
               
               Cow position:chr11:897849-897629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):174, 33

               
               
               Conread position:240-467
               
               
               Cow position:chr11:27461926-27462143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):179, 80

               
               
               Conread position:240-468
               
               
               Cow position:chr11:18924932-18924699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):86, 114

               
               
               Conread position:240-471
               
               
               Cow position:chr11:46922703-46922935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:180
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):108, 10

               
               
               Conread position:240-475
               
               
               Cow position:chr11:82730799-82731050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):79, 213

               
               
               Conread position:240-482
               
               
               Cow position:chr11:49255595-49255345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):67, 108

               
               
               Conread position:240-489
               
               
               Cow position:chr11:48248014-48248285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):10, 37

               
               
               Conread position:240-499
               
               
               Cow position:chr11:17721616-17721883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 196

               
               
               Conread position:240-504
               
               
               Cow position:chr11:64105178-64104913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):112, 84

               
               
               Conread position:240-509
               
               
               Cow position:chr11:32398826-32398548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):73, 131

               
               
               Conread position:240-511
               
               
               Cow position:chr11:19946606-19946345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):179, 27

               
               
               Conread position:240-528
               
               
               Cow position:chr11:6194573-6194301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):226, 67

               
               
               Conread position:240-528
               
               
               Cow position:chr11:29659744-29659456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:200
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):84, 34

               
               
               Conread position:240-528
               
               
               Cow position:chr11:41293619-41293925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:226
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:240-528
               
               
               Cow position:chr11:64101958-64101675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):80, 25

               
               
               Conread position:240-540
               
               
               Cow position:chr11:27719154-27719442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):31, 90

               
               
               Conread position:240-552
               
               
               Cow position:chr11:70756659-70756351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):244, 67

               
               
               Conread position:240-553
               
               
               Cow position:chr11:7385620-7385305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):7, 46

               
               
               Conread position:240-553
               
               
               Cow position:chr11:67614740-67615062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:235
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):174, 97

               
               
               Conread position:240-553
               
               
               Cow position:chr11:70978550-70978863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:229
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):30, 56

               
               
               Conread position:240-559
               
               
               Cow position:chr11:49057568-49057260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:240
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):238, 70

               
               
               Conread position:240-566
               
               
               Cow position:chr11:6633911-6633562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:245
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):67, 212

               
               
               Conread position:240-566
               
               
               Cow position:chr11:21421753-21422085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):86, 135

               
               
               Conread position:240-569
               
               
               Cow position:chr11:71805981-71806296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):227, 45

               
               
               Conread position:240-574
               
               
               Cow position:chr11:47837506-47837164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):9, 35

               
               
               Conread position:240-575
               
               
               Cow position:chr11:6202641-6202288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):75, 200

               
               
               Conread position:240-576
               
               
               Cow position:chr11:3175853-3175531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):168, 33

               
               
               Conread position:240-582
               
               
               Cow position:chr11:30808412-30808762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:229
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):167, 57

               
               
               Conread position:240-584
               
               
               Cow position:chr11:80556403-80556053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):60, 46

               
               
               Conread position:240-597
               
               
               Cow position:chr11:9270553-9270908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 36

               
               
               Conread position:240-604
               
               
               Cow position:chr11:83926216-83925855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:265
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):69, 34

               
               
               Conread position:240-605
               
               
               Cow position:chr11:68841394-68841016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):67, 114

               
               
               Conread position:240-606
               
               
               Cow position:chr11:82796084-82796475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:265
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):51, 216

               
               
               Conread position:240-625
               
               
               Cow position:chr11:71492679-71493066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 27

               
               
               Conread position:240-630
               
               
               Cow position:chr11:11558353-11557958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 24

               
               
               Conread position:240-630
               
               
               Cow position:chr11:65607505-65607904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 90

               
               
               Conread position:240-641
               
               
               Cow position:chr11:35724155-35723755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:276
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):67, 114

               
               
               Conread position:240-650
               
               
               Cow position:chr11:4662878-4663269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:281
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):190, 29

               
               
               Conread position:240-650
               
               
               Cow position:chr11:48672899-48672471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:289
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):93, 192

               
               
               Conread position:240-652
               
               
               Cow position:chr11:33348013-33348417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 56

               
               
               Conread position:240-658
               
               
               Cow position:chr11:27404886-27405307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 137

               
               
               Conread position:240-659
               
               
               Cow position:chr11:62239926-62239510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 64

               
               
               Conread position:240-663
               
               
               Cow position:chr11:50073141-50072718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:311
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):10, 44

               
               
               Conread position:240-664
               
               
               Cow position:chr11:15017243-15016801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:298
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):98, 365

               
               
               Conread position:240-670
               
               
               Cow position:chr11:38639284-38638870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 95

               
               
               Conread position:240-671
               
               
               Cow position:chr11:22977699-22978111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 9

               
               
               Conread position:240-672
               
               
               Cow position:chr11:258988-259431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 97

               
               
               Conread position:240-672
               
               
               Cow position:chr11:17227467-17227892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 9

               
               
               Conread position:240-672
               
               
               Cow position:chr11:49149231-49148796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 82

               
               
               Conread position:240-672
               
               
               Cow position:chr11:55334104-55333656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 206

               
               
               Conread position:240-672
               
               
               Cow position:chr11:80923141-80923587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 33

               
               
               Conread position:240-673
               
               
               Cow position:chr11:18484016-18484413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):242, 70

               
               
               Conread position:240-673
               
               
               Cow position:chr11:18572969-18572550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 68

               
               
               Conread position:240-673
               
               
               Cow position:chr11:31228138-31227741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 25

               
               
               Conread position:240-673
               
               
               Cow position:chr11:40459289-40458867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 14

               
               
               Conread position:240-673
               
               
               Cow position:chr11:40818448-40818892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 15

               
               
               Conread position:240-673
               
               
               Cow position:chr11:41272303-41271885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 45

               
               
               Conread position:240-673
               
               
               Cow position:chr11:46746821-46746381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 55

               
               
               Conread position:240-673
               
               
               Cow position:chr11:48429304-48428841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:322
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):26, 45

               
               
               Conread position:240-673
               
               
               Cow position:chr11:52297038-52297477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 74

               
               
               Conread position:240-673
               
               
               Cow position:chr11:83398092-83397651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 98

               
               
               Conread position:240-673
               
               
               Cow position:chr11:85723879-85723448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 123

               
               
               Conread position:240-674
               
               
               Cow position:chr11:1625037-1625469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 118

               
               
               Conread position:240-674
               
               
               Cow position:chr11:20762037-20761590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 166

               
               
               Conread position:240-674
               
               
               Cow position:chr11:43360602-43361056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):234, 96

               
               
               Conread position:240-674
               
               
               Cow position:chr11:44223066-44222645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:295
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):226, 33

               
               
               Conread position:240-675
               
               
               Cow position:chr11:65495159-65495584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):283, 67

               
               
               Conread position:240-675
               
               
               Cow position:chr11:67931307-67931750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:303
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):98, 13

               
               
               Conread position:240-675
               
               
               Cow position:chr11:83043182-83043616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 73

               
               
               Conread position:240-680
               
               
               Cow position:chr11:20238861-20238412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 196

               
               
               Conread position:240-684
               
               
               Cow position:chr11:30638767-30639213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 88

               
               
               Conread position:240-684
               
               
               Cow position:chr11:42083638-42083215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):239, 45

               
               
               Conread position:240-687
               
               
               Cow position:chr11:17321852-17321390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 172

               
               
               Conread position:240-687
               
               
               Cow position:chr11:70304260-70303815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:300
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):92, 221

               
               
               Conread position:240-690
               
               
               Cow position:chr11:11125850-11125391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 33

               
               
               Conread position:240-690
               
               
               Cow position:chr11:17889542-17889998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 117

               
               
               Conread position:240-697
               
               
               Cow position:chr11:58102572-58103051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 46

               
               
               Conread position:241-387
               
               
               Cow position:chr11:57170426-57170562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:241-413
               
               
               Cow position:chr11:68570198-68570370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):59, 12

               
               
               Conread position:241-417
               
               
               Cow position:chr11:77241886-77241712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:241-431
               
               
               Cow position:chr11:47110440-47110242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):73, 181

               
               
               Conread position:241-446
               
               
               Cow position:chr11:47784964-47784750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:241-471
               
               
               Cow position:chr11:37778633-37778880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:241-495
               
               
               Cow position:chr11:4636990-4637248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):9, 94

               
               
               Conread position:241-517
               
               
               Cow position:chr11:17676191-17676467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):177, 93

               
               
               Conread position:241-524
               
               
               Cow position:chr11:72443298-72443008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):85, 113

               
               
               Conread position:241-535
               
               
               Cow position:chr11:8670200-8669892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):85, 12

               
               
               Conread position:241-539
               
               
               Cow position:chr11:13940371-13940073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):84, 56

               
               
               Conread position:241-549
               
               
               Cow position:chr11:49872703-49873015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:218
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):89, 192

               
               
               Conread position:241-549
               
               
               Cow position:chr11:52690340-52690649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 44

               
               
               Conread position:241-582
               
               
               Cow position:chr11:48296208-48295867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 8

               
               
               Conread position:241-586
               
               
               Cow position:chr11:75874588-75874921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 79

               
               
               Conread position:241-604
               
               
               Cow position:chr11:66572309-66572688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:268
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):66, 8

               
               
               Conread position:241-605
               
               
               Cow position:chr11:34646779-34646403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 101

               
               
               Conread position:241-616
               
               
               Cow position:chr11:26256219-26256600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:259
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):68, 126

               
               
               Conread position:241-637
               
               
               Cow position:chr11:39462804-39462400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 69

               
               
               Conread position:241-650
               
               
               Cow position:chr11:3283225-3282821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:300
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):54, 112

               
               
               Conread position:241-671
               
               
               Cow position:chr11:18706634-18707065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:305
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 97

               
               
               Conread position:241-672
               
               
               Cow position:chr11:6233694-6234131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 197

               
               
               Conread position:241-673
               
               
               Cow position:chr11:866464-866045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):280, 87

               
               
               Conread position:241-673
               
               
               Cow position:chr11:41985864-41986297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 87

               
               
               Conread position:241-673
               
               
               Cow position:chr11:49153124-49152700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 44

               
               
               Conread position:241-674
               
               
               Cow position:chr11:30708688-30708248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 11

               
               
               Conread position:241-674
               
               
               Cow position:chr11:45276964-45277411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:305
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):54, 99

               
               
               Conread position:241-675
               
               
               Cow position:chr11:35580445-35579998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 196

               
               
               Conread position:241-681
               
               
               Cow position:chr11:35153636-35154089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 198

               
               
               Conread position:241-693
               
               
               Cow position:chr11:55053047-55052595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 35

               
               
               Conread position:241-701
               
               
               Cow position:chr11:14378626-14378178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:298
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):85, 14

               
               
               Conread position:242-379
               
               
               Cow position:chr11:32586943-32587079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:242-387
               
               
               Cow position:chr11:17369709-17369567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:242-394
               
               
               Cow position:chr11:4653077-4653225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:242-417
               
               
               Cow position:chr11:62483791-62483955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:242-422
               
               
               Cow position:chr11:12555121-12555305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:242-422
               
               
               Cow position:chr11:80586448-80586275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):173, 11

               
               
               Conread position:242-427
               
               
               Cow position:chr11:66685727-66685912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):153, 79

               
               
               Conread position:242-450
               
               
               Cow position:chr11:30842842-30843047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):176, 32

               
               
               Conread position:242-463
               
               
               Cow position:chr11:21886013-21885792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):79, 31

               
               
               Conread position:242-468
               
               
               Cow position:chr11:15382312-15382549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):69, 202

               
               
               Conread position:242-468
               
               
               Cow position:chr11:35669783-35669998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):176, 32

               
               
               Conread position:242-474
               
               
               Cow position:chr11:35351850-35352090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):57, 191

               
               
               Conread position:242-474
               
               
               Cow position:chr11:42786499-42786746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):75, 168

               
               
               Conread position:242-492
               
               
               Cow position:chr11:18785713-18785943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):225, 43

               
               
               Conread position:242-506
               
               
               Cow position:chr11:27565496-27565250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):168, 10

               
               
               Conread position:242-506
               
               
               Cow position:chr11:47725072-47724817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):231, 38

               
               
               Conread position:242-521
               
               
               Cow position:chr11:17638335-17638632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):50, 211

               
               
               Conread position:242-521
               
               
               Cow position:chr11:80412826-80413112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):78, 247

               
               
               Conread position:242-522
               
               
               Cow position:chr11:48086101-48085814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):155, 86

               
               
               Conread position:242-536
               
               
               Cow position:chr11:6423215-6423518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):84, 105

               
               
               Conread position:242-539
               
               
               Cow position:chr11:375643-375336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:229
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):5, 57

               
               
               Conread position:242-552
               
               
               Cow position:chr11:62789310-62788993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 78

               
               
               Conread position:242-565
               
               
               Cow position:chr11:32254033-32254367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):87, 111

               
               
               Conread position:242-567
               
               
               Cow position:chr11:70251097-70250775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:238
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):152, 25

               
               
               Conread position:242-585
               
               
               Cow position:chr11:55494847-55494514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:260
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):50, 38

               
               
               Conread position:242-625
               
               
               Cow position:chr11:72375483-72375894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 200

               
               
               Conread position:242-634
               
               
               Cow position:chr11:15772530-15772937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 188

               
               
               Conread position:242-645
               
               
               Cow position:chr11:64044400-64044013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 65

               
               
               Conread position:242-671
               
               
               Cow position:chr11:2917410-2917831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 78

               
               
               Conread position:242-673
               
               
               Cow position:chr11:13061071-13061477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:295
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):170, 44

               
               
               Conread position:242-673
               
               
               Cow position:chr11:36182874-36182435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 45

               
               
               Conread position:242-673
               
               
               Cow position:chr11:52380689-52381124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 88

               
               
               Conread position:242-673
               
               
               Cow position:chr11:55744653-55744220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 186

               
               
               Conread position:242-673
               
               
               Cow position:chr11:62490604-62490180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:296
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):176, 31

               
               
               Conread position:242-673
               
               
               Cow position:chr11:78380886-78381300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):222, 82

               
               
               Conread position:243-382
               
               
               Cow position:chr11:4602333-4602194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):37, 91

               
               
               Conread position:243-467
               
               
               Cow position:chr11:39250146-39249927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):172, 28

               
               
               Conread position:243-535
               
               
               Cow position:chr11:40395619-40395324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):9, 80

               
               
               Conread position:243-673
               
               
               Cow position:chr11:6399882-6400326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:303
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):83, 113

               
               
               Conread position:243-674
               
               
               Cow position:chr11:45646416-45646848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 15

               
               
               Conread position:245-417
               
               
               Cow position:chr11:66104213-66104389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):126, 74

               
               
               Conread position:245-422
               
               
               Cow position:chr11:64022930-64023099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):171, 81

               
               
               Conread position:245-468
               
               
               Cow position:chr11:63485112-63484900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:245-472
               
               
               Cow position:chr11:11533755-11533977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):176, 60

               
               
               Conread position:245-504
               
               
               Cow position:chr11:41313482-41313740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):93, 35

               
               
               Conread position:245-528
               
               
               Cow position:chr11:46999166-46998878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):76, 177

               
               
               Conread position:245-539
               
               
               Cow position:chr11:63919887-63920167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):173, 39

               
               
               Conread position:245-574
               
               
               Cow position:chr11:51729454-51729131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 41

               
               
               Conread position:245-664
               
               
               Cow position:chr11:22931817-22932214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:297
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):174, 40

               
               
               Conread position:245-671
               
               
               Cow position:chr11:21843959-21844387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 85

               
               
               Conread position:245-674
               
               
               Cow position:chr11:13042968-13043396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 83

               
               
               Conread position:246-409
               
               
               Cow position:chr11:33369331-33369165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):77, 95

               
               
               Conread position:246-422
               
               
               Cow position:chr11:9699076-9699244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):173, 64

               
               
               Conread position:246-468
               
               
               Cow position:chr11:56311421-56311642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):178, 88

               
               
               Conread position:246-514
               
               
               Cow position:chr11:4199453-4199179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):63, 88

               
               
               Conread position:246-522
               
               
               Cow position:chr11:53510316-53510605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):30, 179

               
               
               Conread position:246-673
               
               
               Cow position:chr11:19487300-19487729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:275
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):80, 108

               
               
               Conread position:249-469
               
               
               Cow position:chr11:25119760-25119978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):163, 79

               
               
               Conread position:249-471
               
               
               Cow position:chr11:29786317-29786549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):51, 36

               
               
               Conread position:249-528
               
               
               Cow position:chr11:372538-372801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):77, 28

               
               
               Conread position:249-528
               
               
               Cow position:chr11:17036356-17036636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):169, 71

               
               
               Conread position:249-549
               
               
               Cow position:chr11:40608417-40608724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 58

               
               
               Conread position:249-621
               
               
               Cow position:chr11:14470537-14470169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):243, 75

               
               
               Conread position:249-671
               
               
               Cow position:chr11:27248664-27248239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 85

               
               
               Conread position:249-671
               
               
               Cow position:chr11:45631604-45632016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):235, 37

               
               
               Conread position:249-673
               
               
               Cow position:chr11:9221546-9221979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 187

               
               
               Conread position:249-673
               
               
               Cow position:chr11:80564473-80564051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:296
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):74, 104

               
               
               Conread position:249-708
               
               
               Cow position:chr11:55762032-55761591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):166, 6

               
               
               Conread position:250-421
               
               
               Cow position:chr11:6255834-6256001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:250-528
               
               
               Cow position:chr11:26274791-26275063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):156, 52

               
               
               Conread position:250-620
               
               
               Cow position:chr11:3703126-3702747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:250
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):90, 17

               
               
               Conread position:250-670
               
               
               Cow position:chr11:2907359-2907776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):242, 23

               
               
               Conread position:250-673
               
               
               Cow position:chr11:68904913-68905316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:301
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):169, 35

               
               
               Conread position:250-676
               
               
               Cow position:chr11:77705925-77705509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 125

               
               
               Conread position:250-715
               
               
               Cow position:chr11:48544611-48544149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 64

               
               
               Conread position:251-417
               
               
               Cow position:chr11:15278844-15279006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:251-469
               
               
               Cow position:chr11:3714996-3714778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):75, 167

               
               
               Conread position:251-615
               
               
               Cow position:chr11:36058972-36058605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):47, 34

               
               
               Conread position:251-672
               
               
               Cow position:chr11:70483677-70484114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 182

               
               
               Conread position:251-673
               
               
               Cow position:chr11:24602132-24601716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 24

               
               
               Conread position:251-675
               
               
               Cow position:chr11:8496207-8495781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:290
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):89, 110

               
               
               Conread position:252-442
               
               
               Cow position:chr11:49207884-49207691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):74, 147

               
               
               Conread position:252-465
               
               
               Cow position:chr11:43914466-43914250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):76, 175

               
               
               Conread position:252-467
               
               
               Cow position:chr11:77013943-77013739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:252-652
               
               
               Cow position:chr11:62620549-62620152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 83

               
               
               Conread position:253-417
               
               
               Cow position:chr11:26343274-26343108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:253-417
               
               
               Cow position:chr11:46884547-46884380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):47, 32

               
               
               Conread position:253-422
               
               
               Cow position:chr11:60720282-60720455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:253-458
               
               
               Cow position:chr11:58173807-58173589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):34, 155

               
               
               Conread position:253-473
               
               
               Cow position:chr11:34644830-34644604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):73, 190

               
               
               Conread position:253-495
               
               
               Cow position:chr11:36920406-36920654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):72, 23

               
               
               Conread position:253-500
               
               
               Cow position:chr11:62889720-62889972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):75, 169

               
               
               Conread position:253-605
               
               
               Cow position:chr11:27913458-27913085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:254
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):36, 185

               
               
               Conread position:253-673
               
               
               Cow position:chr11:48474881-48474455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 88

               
               
               Conread position:253-674
               
               
               Cow position:chr11:23137888-23138316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 21

               
               
               Conread position:254-469
               
               
               Cow position:chr11:18543350-18543553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):67, 31

               
               
               Conread position:254-476
               
               
               Cow position:chr11:37435819-37436040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):67, 20

               
               
               Conread position:254-592
               
               
               Cow position:chr11:28993577-28993904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:252
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):164, 71

               
               
               Conread position:254-600
               
               
               Cow position:chr11:42296456-42296803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 35

               
               
               Conread position:254-620
               
               
               Cow position:chr11:63202078-63202440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:252
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):74, 8

               
               
               Conread position:254-663
               
               
               Cow position:chr11:8524947-8525357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 79

               
               
               Conread position:254-673
               
               
               Cow position:chr11:34467733-34467349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:254-673
               
               
               Cow position:chr11:73353896-73354307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 60

               
               
               Conread position:257-453
               
               
               Cow position:chr11:64409134-64408945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:257-472
               
               
               Cow position:chr11:38211809-38211595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):38, 8

               
               
               Conread position:257-476
               
               
               Cow position:chr11:44017152-44016918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:257-479
               
               
               Cow position:chr11:39854854-39855071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:257-509
               
               
               Cow position:chr11:35926741-35926995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):69, 21

               
               
               Conread position:257-535
               
               
               Cow position:chr11:11994544-11994820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):44, 27

               
               
               Conread position:257-564
               
               
               Cow position:chr11:85703857-85703558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:212
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):152, 67

               
               
               Conread position:257-567
               
               
               Cow position:chr11:18852071-18851768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):160, 77

               
               
               Conread position:257-572
               
               
               Cow position:chr11:63435690-63435362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 176

               
               
               Conread position:257-634
               
               
               Cow position:chr11:34144751-34145131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 139

               
               
               Conread position:257-672
               
               
               Cow position:chr11:32199111-32198687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:269
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):68, 113

               
               
               Conread position:257-674
               
               
               Cow position:chr11:30355214-30354812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 31

               
               
               Conread position:258-414
               
               
               Cow position:chr11:4411705-4411859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):9, 67

               
               
               Conread position:258-673
               
               
               Cow position:chr11:34121362-34120944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 19

               
               
               Conread position:258-673
               
               
               Cow position:chr11:46747692-46748120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 180

               
               
               Conread position:258-673
               
               
               Cow position:chr11:83066659-83066242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 167

               
               
               Conread position:259-506
               
               
               Cow position:chr11:18910718-18910964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):130, 156

               
               
               Conread position:259-569
               
               
               Cow position:chr11:47772216-47772544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):46, 188

               
               
               Conread position:261-543
               
               
               Cow position:chr11:31875258-31874970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):65, 99

               
               
               Conread position:261-591
               
               
               Cow position:chr11:18508865-18509193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:247
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):65, 173

               
               
               Conread position:261-673
               
               
               Cow position:chr11:62663078-62663486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 15

               
               
               Conread position:262-467
               
               
               Cow position:chr11:4225251-4225052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):152, 66

               
               
               Conread position:264-597
               
               
               Cow position:chr11:38670851-38670502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):64, 171

               
               
               Conread position:264-673
               
               
               Cow position:chr11:30879831-30879426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 16

               
               
               Conread position:265-574
               
               
               Cow position:chr11:39499515-39499201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:224
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):69, 80

               
               
               Conread position:265-674
               
               
               Cow position:chr11:7924432-7924844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 28

               
               
               Conread position:266-405
               
               
               Cow position:chr11:62081813-62081949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:270-579
               
               
               Cow position:chr11:17493638-17493316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:241
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):45, 27

               
               
               Conread position:272-464
               
               
               Cow position:chr11:34136394-34136201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):54, 33

               
               
               Conread position:272-652
               
               
               Cow position:chr11:11469500-11469866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:270
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):142, 65

               
               
               Conread position:273-481
               
               
               Cow position:chr11:31410728-31410938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):145, 61

               
               
               Conread position:274-528
               
               
               Cow position:chr11:66518636-66518384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):13, 91

               
               
               Conread position:274-623
               
               
               Cow position:chr11:67246932-67246601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:248
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):17, 11

               
               
               Conread position:274-662
               
               
               Cow position:chr11:82940474-82940860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 68

               
               
               Conread position:275-637
               
               
               Cow position:chr11:23586790-23586418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 22

               
               
               Conread position:276-671
               
               
               Cow position:chr11:68206697-68207089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 48

               
               
               Conread position:277-672
               
               
               Cow position:chr11:71868455-71868856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:286
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):49, 27

               
               
               Conread position:278-559
               
               
               Cow position:chr11:69076053-69075766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):139, 6

               
               
               Conread position:279-672
               
               
               Cow position:chr11:43430311-43430699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 18

               
               
               Conread position:282-579
               
               
               Cow position:chr11:56187750-56187457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):185, 96

               
               
               Conread position:286-673
               
               
               Cow position:chr11:34113401-34113021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 40

               
               
               Conread position:286-674
               
               
               Cow position:chr11:59873062-59872671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 38

               
               
               Conread position:295-604
               
               
               Cow position:chr11:48306216-48306531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):21, 142

               
               
               Conread position:300-673
               
               
               Cow position:chr11:43898259-43897884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 20

               
               
               Conread position:301-459
               
               
               Cow position:chr11:53717682-53717844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):17, 35

               
               
               Conread position:302-474
               
               
               Cow position:chr11:11523334-11523519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):72, 97

               
               
               Conread position:305-476
               
               
               Cow position:chr11:53279596-53279766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):40, 19

               
               
               Conread position:305-675
               
               
               Cow position:chr11:18086230-18086594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:269
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):222, 28

               
               
               Conread position:306-483
               
               
               Cow position:chr11:62754199-62754380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:306-571
               
               
               Cow position:chr11:70277996-70278263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):113, 28

               
               
               Conread position:307-412
               
               
               Cow position:chr11:58228731-58228627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:86
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:307-531
               
               
               Cow position:chr11:18587476-18587718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):20, 134

               
               
               Conread position:308-478
               
               
               Cow position:chr11:34692970-34692799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):33, 161

               
               
               Conread position:308-623
               
               
               Cow position:chr11:27932395-27932062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:237
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):86, 36

               
               
               Conread position:308-667
               
               
               Cow position:chr11:83230286-83230634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 26

               
               
               Conread position:308-673
               
               
               Cow position:chr11:29946800-29947180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 14

               
               
               Conread position:308-673
               
               
               Cow position:chr11:33753793-33754153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 55

               
               
               Conread position:308-673
               
               
               Cow position:chr11:62150779-62151135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:255
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):164, 25

               
               
               Conread position:308-673
               
               
               Cow position:chr11:64089984-64090340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 10

               
               
               Conread position:308-673
               
               
               Cow position:chr11:69119409-69119046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 127

               
               
               Conread position:309-677
               
               
               Cow position:chr11:7590304-7589932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 107

               
               
               Conread position:310-466
               
               
               Cow position:chr11:56290624-56290467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):119, 23

               
               
               Conread position:310-473
               
               
               Cow position:chr11:30888167-30888334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):77, 23

               
               
               Conread position:310-475
               
               
               Cow position:chr11:82289691-82289530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):125, 23

               
               
               Conread position:310-501
               
               
               Cow position:chr11:70826061-70825870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):109, 24

               
               
               Conread position:310-506
               
               
               Cow position:chr11:29699586-29699782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):101, 124

               
               
               Conread position:310-509
               
               
               Cow position:chr11:62778554-62778358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):123, 23

               
               
               Conread position:310-511
               
               
               Cow position:chr11:35803249-35803043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):60, 27

               
               
               Conread position:310-536
               
               
               Cow position:chr11:69307626-69307391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):114, 24

               
               
               Conread position:310-588
               
               
               Cow position:chr11:16906938-16907214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 23

               
               
               Conread position:310-600
               
               
               Cow position:chr11:30955115-30954815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 126

               
               
               Conread position:310-638
               
               
               Cow position:chr11:27765267-27764934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):110, 129

               
               
               Conread position:310-663
               
               
               Cow position:chr11:36849030-36848688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):217, 109

               
               
               Conread position:310-670
               
               
               Cow position:chr11:2832575-2832921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):25, 87

               
               
               Conread position:310-672
               
               
               Cow position:chr11:63847957-63847597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 23

               
               
               Conread position:310-672
               
               
               Cow position:chr11:70609909-70609535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 17

               
               
               Conread position:310-673
               
               
               Cow position:chr11:25387182-25386817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 130

               
               
               Conread position:310-673
               
               
               Cow position:chr11:28644200-28643828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 23

               
               
               Conread position:310-673
               
               
               Cow position:chr11:48272315-48271941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 126

               
               
               Conread position:310-673
               
               
               Cow position:chr11:54334441-54334081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 23

               
               
               Conread position:310-673
               
               
               Cow position:chr11:62226102-62225746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):29, 115

               
               
               Conread position:310-673
               
               
               Cow position:chr11:73924448-73924812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 126

               
               
               Conread position:310-675
               
               
               Cow position:chr11:33414349-33413978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 23

               
               
               Conread position:310-675
               
               
               Cow position:chr11:80530471-80530115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 23

               
               
               Conread position:311-505
               
               
               Cow position:chr11:22747219-22747414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:159
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):170, 22

               
               
               Conread position:311-505
               
               
               Cow position:chr11:79018947-79019145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):107, 22

               
               
               Conread position:311-528
               
               
               Cow position:chr11:14466372-14466595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):12, 216

               
               
               Conread position:311-566
               
               
               Cow position:chr11:4652861-4653126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):104, 22

               
               
               Conread position:311-596
               
               
               Cow position:chr11:26845481-26845760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:211
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):103, 124

               
               
               Conread position:311-659
               
               
               Cow position:chr11:67804854-67804509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 16

               
               
               Conread position:311-671
               
               
               Cow position:chr11:40792593-40792945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):106, 23

               
               
               Conread position:311-674
               
               
               Cow position:chr11:41809381-41809732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 22

               
               
               Conread position:312-634
               
               
               Cow position:chr11:36238888-36238567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 21

               
               
               Conread position:312-669
               
               
               Cow position:chr11:40478740-40479125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:273
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):14, 154

               
               
               Conread position:312-674
               
               
               Cow position:chr11:59702602-59702229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 127

               
               
               Conread position:313-550
               
               
               Cow position:chr11:83033130-83033366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):124, 20

               
               
               Conread position:313-590
               
               
               Cow position:chr11:39118869-39118585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):19, 49

               
               
               Conread position:313-663
               
               
               Cow position:chr11:63482321-63482669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 31

               
               
               Conread position:313-668
               
               
               Cow position:chr11:36658714-36659062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 20

               
               
               Conread position:313-672
               
               
               Cow position:chr11:73512331-73512672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:262
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):16, 33

               
               
               Conread position:313-673
               
               
               Cow position:chr11:17831111-17831481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 124

               
               
               Conread position:314-472
               
               
               Cow position:chr11:19606687-19606527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):104, 117

               
               
               Conread position:314-640
               
               
               Cow position:chr11:2092436-2092120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:233
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):104, 19

               
               
               Conread position:314-666
               
               
               Cow position:chr11:76114751-76114408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 19

               
               
               Conread position:314-673
               
               
               Cow position:chr11:11232348-11232707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 22

               
               
               Conread position:314-677
               
               
               Cow position:chr11:1070982-1071350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 19

               
               
               Conread position:315-539
               
               
               Cow position:chr11:33345557-33345325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):16, 119

               
               
               Conread position:315-594
               
               
               Cow position:chr11:71501024-71501312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:215
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):100, 29

               
               
               Conread position:316-629
               
               
               Cow position:chr11:82107793-82108097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):13, 71

               
               
               Conread position:316-667
               
               
               Cow position:chr11:44636648-44637008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 20

               
               
               Conread position:316-672
               
               
               Cow position:chr11:34032093-34032450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:262
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):29, 6

               
               
               Conread position:316-673
               
               
               Cow position:chr11:33311086-33310717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 124

               
               
               Conread position:316-675
               
               
               Cow position:chr11:21497630-21497285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:234
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):98, 116

               
               
               Conread position:317-584
               
               
               Cow position:chr11:16540969-16540695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):102, 121

               
               
               Conread position:317-592
               
               
               Cow position:chr11:63909561-63909833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):88, 16

               
               
               Conread position:318-594
               
               
               Cow position:chr11:77118804-77118534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):205, 38

               
               
               Conread position:318-672
               
               
               Cow position:chr11:22499260-22499604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 99

               
               
               Conread position:318-674
               
               
               Cow position:chr11:58400354-58400010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 95

               
               
               Conread position:318-675
               
               
               Cow position:chr11:80761273-80761635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:251
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):110, 15

               
               
               Conread position:319-670
               
               
               Cow position:chr11:8840652-8840991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 14

               
               
               Conread position:319-674
               
               
               Cow position:chr11:56654663-56654293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:263
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):16, 119

               
               
               Conread position:320-528
               
               
               Cow position:chr11:64867917-64868121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):95, 147

               
               
               Conread position:320-671
               
               
               Cow position:chr11:67747382-67747030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 14

               
               
               Conread position:320-674
               
               
               Cow position:chr11:16342124-16342496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 116

               
               
               Conread position:321-672
               
               
               Cow position:chr11:5031673-5032030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 116

               
               
               Conread position:321-673
               
               
               Cow position:chr11:3234177-3233827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 12

               
               
               Conread position:321-674
               
               
               Cow position:chr11:26483809-26483464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 29

               
               
               Conread position:322-465
               
               
               Cow position:chr11:81931016-81931155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:322-673
               
               
               Cow position:chr11:58588446-58588091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 62

               
               
               Conread position:323-663
               
               
               Cow position:chr11:30925254-30924909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:258
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):92, 10

               
               
               Conread position:323-669
               
               
               Cow position:chr11:36799208-36799548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 10

               
               
               Conread position:323-671
               
               
               Cow position:chr11:8147798-8148138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:253
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):95, 112

               
               
               Conread position:323-673
               
               
               Cow position:chr11:42359219-42358871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:259
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):33, 10

               
               
               Conread position:323-676
               
               
               Cow position:chr11:377541-377906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 112

               
               
               Conread position:323-676
               
               
               Cow position:chr11:35684401-35684754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 10

               
               
               Conread position:324-670
               
               
               Cow position:chr11:10213469-10213815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:253
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):89, 47

               
               
               Conread position:324-670
               
               
               Cow position:chr11:53553315-53553003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:247
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):90, 32

               
               
               Conread position:325-527
               
               
               Cow position:chr11:65767298-65767092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):89, 109

               
               
               Conread position:325-673
               
               
               Cow position:chr11:23128442-23128793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 12

               
               
               Conread position:327-550
               
               
               Cow position:chr11:46953044-46952822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):89, 108

               
               
               Conread position:328-425
               
               
               Cow position:chr11:25320281-25320183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:83
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:328-557
               
               
               Cow position:chr11:261172-261398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):90, 110

               
               
               Conread position:328-566
               
               
               Cow position:chr11:86720322-86720561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):17, 45

               
               
               Conread position:328-574
               
               
               Cow position:chr11:13075716-13075948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:328-673
               
               
               Cow position:chr11:1362372-1362734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 95

               
               
               Conread position:329-652
               
               
               Cow position:chr11:42043902-42044223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 24

               
               
               Conread position:329-670
               
               
               Cow position:chr11:76606767-76606436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 106

               
               
               Conread position:329-672
               
               
               Cow position:chr11:44234450-44234105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 106

               
               
               Conread position:330-594
               
               
               Cow position:chr11:60143212-60143476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:198
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):100, 7

               
               
               Conread position:337-464
               
               
               Cow position:chr11:16801870-16801994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:337-476
               
               
               Cow position:chr11:48512250-48512110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):91, 85

               
               
               Conread position:337-481
               
               
               Cow position:chr11:30484006-30483860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):38, 47

               
               
               Conread position:337-499
               
               
               Cow position:chr11:28168336-28168503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):75, 102

               
               
               Conread position:337-505
               
               
               Cow position:chr11:3790929-3790750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:337-512
               
               
               Cow position:chr11:69652695-69652877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:337-518
               
               
               Cow position:chr11:64406315-64406128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):76, 98

               
               
               Conread position:337-528
               
               
               Cow position:chr11:249395-249591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):81, 98

               
               
               Conread position:337-609
               
               
               Cow position:chr11:48496506-48496774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):79, 135

               
               
               Conread position:337-670
               
               
               Cow position:chr11:31352465-31352823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 97

               
               
               Conread position:337-670
               
               
               Cow position:chr11:35873916-35874235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):81, 98

               
               
               Conread position:337-670
               
               
               Cow position:chr11:65409070-65409408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:238
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):104, 24

               
               
               Conread position:337-672
               
               
               Cow position:chr11:3833277-3833600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:250
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):136, 35

               
               
               Conread position:337-673
               
               
               Cow position:chr11:8428598-8428241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 187

               
               
               Conread position:337-673
               
               
               Cow position:chr11:33341058-33341399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 98

               
               
               Conread position:337-673
               
               
               Cow position:chr11:34829699-34830033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 64

               
               
               Conread position:337-673
               
               
               Cow position:chr11:45897963-45898308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 152

               
               
               Conread position:337-673
               
               
               Cow position:chr11:49934644-49934995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 82

               
               
               Conread position:337-673
               
               
               Cow position:chr11:50778454-50778117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 101

               
               
               Conread position:337-673
               
               
               Cow position:chr11:63469962-63469629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 98

               
               
               Conread position:337-673
               
               
               Cow position:chr11:80819918-80820252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:247
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):77, 51

               
               
               Conread position:337-674
               
               
               Cow position:chr11:7414789-7415101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:337-674
               
               
               Cow position:chr11:81162346-81162686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 97

               
               
               Conread position:338-514
               
               
               Cow position:chr11:63687534-63687707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):77, 97

               
               
               Conread position:338-596
               
               
               Cow position:chr11:5549-5287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):73, 97

               
               
               Conread position:339-538
               
               
               Cow position:chr11:84490415-84490607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):188, 75

               
               
               Conread position:339-588
               
               
               Cow position:chr11:21438293-21438044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):76, 85

               
               
               Conread position:339-673
               
               
               Cow position:chr11:70620129-70619802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:231
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):79, 95

               
               
               Conread position:339-674
               
               
               Cow position:chr11:47545216-47544872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 76

               
               
               Conread position:340-544
               
               
               Cow position:chr11:16842903-16843108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):74, 11

               
               
               Conread position:341-673
               
               
               Cow position:chr11:64638443-64638777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:245
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):83, 182

               
               
               Conread position:344-630
               
               
               Cow position:chr11:52983755-52983480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):75, 94

               
               
               Conread position:344-673
               
               
               Cow position:chr11:51144793-51144464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:244
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):80, 75

               
               
               Conread position:346-673
               
               
               Cow position:chr11:62880554-62880877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:238
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):78, 58

               
               
               Conread position:353-528
               
               
               Cow position:chr11:69392633-69392451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):61, 82

               
               
               Conread position:354-528
               
               
               Cow position:chr11:75965582-75965756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):71, 65

               
               
               Conread position:355-589
               
               
               Cow position:chr11:41175880-41176122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):60, 80

               
               
               Conread position:355-673
               
               
               Cow position:chr11:10620259-10620579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:232
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):59, 76

               
               
               Conread position:355-674
               
               
               Cow position:chr11:70273375-70273046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:240
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):63, 76

               
               
               Conread position:356-625
               
               
               Cow position:chr11:49231941-49231668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):62, 79

               
               
               Conread position:359-655
               
               
               Cow position:chr11:10686822-10687123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):71, 42

               
               
               Conread position:359-662
               
               
               Cow position:chr11:25337130-25336832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):61, 80

               
               
               Conread position:359-667
               
               
               Cow position:chr11:5226666-5226989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:360-675
               
               
               Cow position:chr11:4732406-4732083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):69, 160

               
               
               Conread position:361-630
               
               
               Cow position:chr11:38874339-38874613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):54, 74

               
               
               Conread position:361-674
               
               
               Cow position:chr11:24937728-24937407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 73

               
               
               Conread position:362-549
               
               
               Cow position:chr11:46592527-46592339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):107, 20

               
               
               Conread position:364-675
               
               
               Cow position:chr11:71168530-71168834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):52, 60

               
               
               Conread position:367-552
               
               
               Cow position:chr11:76653076-76652887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):45, 57

               
               
               Conread position:367-641
               
               
               Cow position:chr11:61858846-61859122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 57

               
               
               Conread position:367-645
               
               
               Cow position:chr11:19593874-19593593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):63, 58

               
               
               Conread position:367-648
               
               
               Cow position:chr11:18340984-18341267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 71

               
               
               Conread position:367-675
               
               
               Cow position:chr11:3780361-3780680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 52

               
               
               Conread position:367-675
               
               
               Cow position:chr11:29916598-29916282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:233
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):63, 165

               
               
               Conread position:367-675
               
               
               Cow position:chr11:41811858-41812167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:225
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):46, 58

               
               
               Conread position:368-675
               
               
               Cow position:chr11:80787851-80788166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:222
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):61, 157

               
               
               Conread position:370-590
               
               
               Cow position:chr11:53512136-53511908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):49, 24

               
               
               Conread position:373-675
               
               
               Cow position:chr11:56729000-56728691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 101

               
               
               Conread position:375-673
               
               
               Cow position:chr11:30597042-30596743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:224
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):36, 67

               
               
               Conread position:375-675
               
               
               Cow position:chr11:3726337-3726030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):55, 226

               
               
               Conread position:381-611
               
               
               Cow position:chr11:9088255-9088497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):38, 223

               
               
               Conread position:382-600
               
               
               Cow position:chr11:2811688-2811912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:174
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):42, 37

               
               
               Conread position:383-607
               
               
               Cow position:chr11:67136390-67136630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):35, 24

               
               
               Conread position:385-605
               
               
               Cow position:chr11:57170791-57171015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):32, 53

               
               
               Conread position:385-614
               
               
               Cow position:chr11:48041994-48042237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:385-652
               
               
               Cow position:chr11:14094381-14094657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:210
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):34, 53

               
               
               Conread position:390-648
               
               
               Cow position:chr11:18591400-18591662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:199
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):28, 41

               
               
               Conread position:390-673
               
               
               Cow position:chr11:27386305-27386593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:212
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):28, 205

               
               
               Conread position:390-673
               
               
               Cow position:chr11:48697478-48697194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):92, 25

               
               
               Conread position:390-674
               
               
               Cow position:chr11:21798963-21798696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):155, 29

               
               
               Conread position:391-673
               
               
               Cow position:chr11:18210315-18210602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):26, 47

               
               
               Conread position:396-590
               
               
               Cow position:chr11:21427965-21428165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):23, 42

               
               
               Conread position:396-673
               
               
               Cow position:chr11:42792945-42793229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 42

               
               
               Conread position:396-674
               
               
               Cow position:chr11:6154436-6154157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:214
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):26, 41

               
               
               Conread position:396-675
               
               
               Cow position:chr11:10076796-10076519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):23, 72

               
               
               Conread position:398-674
               
               
               Cow position:chr11:17112607-17112881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):37, 206

               
               
               Conread position:399-674
               
               
               Cow position:chr11:81174909-81174635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 38

               
               
               Conread position:399-693
               
               
               Cow position:chr11:2309898-2309599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 126

               
               
               Conread position:401-673
               
               
               Cow position:chr11:24585204-24584927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):18, 37

               
               
               Conread position:403-673
               
               
               Cow position:chr11:38810328-38810604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:201
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):21, 16

               
               
               Conread position:404-673
               
               
               Cow position:chr11:18388853-18389110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):20, 15

               
               
               Conread position:404-673
               
               
               Cow position:chr11:38194173-38193898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:207
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):78, 8

               
               
               Conread position:404-674
               
               
               Cow position:chr11:83196517-83196244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 117

               
               
               Conread position:405-635
               
               
               Cow position:chr11:17553331-17553562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):73, 19

               
               
               Conread position:407-673
               
               
               Cow position:chr11:62979507-62979224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):12, 31

               
               
               Conread position:408-673
               
               
               Cow position:chr11:37347494-37347221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):11, 63

               
               
               Conread position:409-673
               
               
               Cow position:chr11:17968570-17968829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):64, 27

               
               
               Conread position:412-673
               
               
               Cow position:chr11:32610009-32609738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):18, 12

               
               
               Conread position:413-589
               
               
               Cow position:chr11:65843082-65843267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):12, 111

               
               
               Conread position:415-594
               
               
               Cow position:chr11:33468718-33468535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):15, 9

               
               
               Conread position:415-634
               
               
               Cow position:chr11:18373083-18372863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):15, 9

               
               
               Conread position:415-674
               
               
               Cow position:chr11:53130821-53130557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):20, 51

               
               
               Conread position:417-628
               
               
               Cow position:chr11:36672040-36672259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):110, 19

               
               
               Conread position:417-653
               
               
               Cow position:chr11:2514590-2514826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):62, 19

               
               
               Conread position:423-675
               
               
               Cow position:chr11:85764936-85764696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):7, 59

               
               
               Conread position:426-624
               
               
               Cow position:chr11:33364339-33364137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):101, 85

               
               
               Conread position:428-667
               
               
               Cow position:chr11:47165147-47165385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 148

               
               
               Conread position:434-670
               
               
               Cow position:chr11:41577032-41577259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):95, 37

               
               
               Conread position:434-671
               
               
               Cow position:chr11:58460099-58459876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):35, 47

               
               
               Conread position:434-673
               
               
               Cow position:chr11:8105773-8105529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 68

               
               
               Conread position:434-673
               
               
               Cow position:chr11:25320044-25319797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:186
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):39, 90

               
               
               Conread position:434-676
               
               
               Cow position:chr11:62965560-62965811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):35, 98

               
               
               Conread position:434-698
               
               
               Cow position:chr11:71455780-71455508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):47, 16

               
               
               Conread position:435-670
               
               
               Cow position:chr11:21819454-21819695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):41, 29

               
               
               Conread position:436-659
               
               
               Cow position:chr11:77241356-77241134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):34, 84

               
               
               Conread position:436-673
               
               
               Cow position:chr11:63516813-63516570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 86

               
               
               Conread position:436-674
               
               
               Cow position:chr11:49106043-49105803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):48, 34

               
               
               Conread position:439-597
               
               
               Cow position:chr11:47109956-47109789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):34, 85

               
               
               Conread position:439-672
               
               
               Cow position:chr11:81614657-81614885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):91, 37

               
               
               Conread position:439-673
               
               
               Cow position:chr11:9837115-9837350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):45, 84

               
               
               Conread position:439-673
               
               
               Cow position:chr11:48901099-48901331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):46, 40

               
               
               Conread position:440-637
               
               
               Cow position:chr11:40860732-40860934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):99, 36

               
               
               Conread position:440-668
               
               
               Cow position:chr11:37100375-37100608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):44, 24

               
               
               Conread position:440-668
               
               
               Cow position:chr11:62808670-62808897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:184
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):87, 40

               
               
               Conread position:440-675
               
               
               Cow position:chr11:59370996-59370759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):28, 107

               
               
               Conread position:443-670
               
               
               Cow position:chr11:41239290-41239525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):33, 80

               
               
               Conread position:444-633
               
               
               Cow position:chr11:47851004-47850814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):64, 164

               
               
               Conread position:462-674
               
               
               Cow position:chr11:74929739-74929525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):65, 19

               
               
               Conread position:464-674
               
               
               Cow position:chr11:57111347-57111563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):20, 93

               
               
               Conread position:466-669
               
               
               Cow position:chr11:25165397-25165194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:168
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):64, 57

               
               
               Conread position:478-674
               
               
               Cow position:chr11:46451549-46451363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):75, 9

               
               
               Conread position:483-674
               
               
               Cow position:chr11:84890812-84891007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:486-675
               
               
               Cow position:chr11:19508230-19508041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):44, 34

               
               
               Conread position:162-387
               
               
               Cow position:chr12:17744631-17744848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:162-587
               
               
               Cow position:chr12:11588011-11587576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:302
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):54, 45

               
               
               Conread position:200-446
               
               
               Cow position:chr12:14986954-14986704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):28, 137

               
               
               Conread position:205-421
               
               
               Cow position:chr12:31841770-31841550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):38, 127

               
               
               Conread position:211-673
               
               
               Cow position:chr12:17080458-17079985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 37

               
               
               Conread position:220-673
               
               
               Cow position:chr12:4008097-4008556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 223

               
               
               Conread position:226-446
               
               
               Cow position:chr12:48579014-48578798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):18, 97

               
               
               Conread position:231-380
               
               
               Cow position:chr12:25299533-25299382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):97, 66

               
               
               Conread position:232-492
               
               
               Cow position:chr12:40200866-40200611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):75, 20

               
               
               Conread position:233-448
               
               
               Cow position:chr12:22859620-22859420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:234-387
               
               
               Cow position:chr12:19056845-19056688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):75, 104

               
               
               Conread position:234-411
               
               
               Cow position:chr12:20439091-20439265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):16, 90

               
               
               Conread position:234-412
               
               
               Cow position:chr12:29316291-29316471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):9, 61

               
               
               Conread position:234-415
               
               
               Cow position:chr12:29180844-29180663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):9, 100

               
               
               Conread position:234-417
               
               
               Cow position:chr12:3057257-3057073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):77, 19

               
               
               Conread position:234-421
               
               
               Cow position:chr12:19272520-19272706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):13, 95

               
               
               Conread position:234-422
               
               
               Cow position:chr12:22048092-22047904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):94, 19

               
               
               Conread position:234-422
               
               
               Cow position:chr12:37480669-37480855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):92, 18

               
               
               Conread position:234-430
               
               
               Cow position:chr12:2964216-2964020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):9, 100

               
               
               Conread position:234-463
               
               
               Cow position:chr12:36261863-36261627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):66, 52

               
               
               Conread position:234-466
               
               
               Cow position:chr12:45092608-45092381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):47, 16

               
               
               Conread position:234-503
               
               
               Cow position:chr12:4954990-4954727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):189, 87

               
               
               Conread position:234-511
               
               
               Cow position:chr12:18582830-18583104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):180, 39

               
               
               Conread position:234-542
               
               
               Cow position:chr12:10942463-10942143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:229
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):67, 197

               
               
               Conread position:234-555
               
               
               Cow position:chr12:26217658-26217980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 47

               
               
               Conread position:234-599
               
               
               Cow position:chr12:17879137-17879505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 15

               
               
               Conread position:234-633
               
               
               Cow position:chr12:29899252-29899670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:269
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):92, 18

               
               
               Conread position:234-663
               
               
               Cow position:chr12:17624667-17625081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:287
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):61, 91

               
               
               Conread position:234-673
               
               
               Cow position:chr12:10895386-10895821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:297
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):94, 18

               
               
               Conread position:234-673
               
               
               Cow position:chr12:15089684-15089219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 15

               
               
               Conread position:234-673
               
               
               Cow position:chr12:19502244-19502693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 216

               
               
               Conread position:235-417
               
               
               Cow position:chr12:25528393-25528574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):8, 36

               
               
               Conread position:235-448
               
               
               Cow position:chr12:24437461-24437682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):9, 206

               
               
               Conread position:235-460
               
               
               Cow position:chr12:1701648-1701864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):181, 12

               
               
               Conread position:235-532
               
               
               Cow position:chr12:24152509-24152205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:223
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):63, 14

               
               
               Conread position:235-539
               
               
               Cow position:chr12:7539619-7539931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):91, 17

               
               
               Conread position:235-673
               
               
               Cow position:chr12:17031777-17031348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 73

               
               
               Conread position:235-673
               
               
               Cow position:chr12:18123835-18123413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 85

               
               
               Conread position:235-674
               
               
               Cow position:chr12:25804976-25805385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 53

               
               
               Conread position:235-678
               
               
               Cow position:chr12:39465732-39465300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 14

               
               
               Conread position:236-430
               
               
               Cow position:chr12:29731477-29731284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):178, 11

               
               
               Conread position:236-474
               
               
               Cow position:chr12:29057556-29057315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):90, 13

               
               
               Conread position:236-477
               
               
               Cow position:chr12:37514115-37514357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):32, 13

               
               
               Conread position:236-574
               
               
               Cow position:chr12:15050460-15050798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:238
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):92, 10

               
               
               Conread position:236-652
               
               
               Cow position:chr12:24023645-24024043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:296
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):180, 22

               
               
               Conread position:236-673
               
               
               Cow position:chr12:36500781-36501225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 16

               
               
               Conread position:236-673
               
               
               Cow position:chr12:44622528-44622086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 171

               
               
               Conread position:236-687
               
               
               Cow position:chr12:27563213-27563668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 17

               
               
               Conread position:237-385
               
               
               Cow position:chr12:24533649-24533798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):52, 13

               
               
               Conread position:237-464
               
               
               Cow position:chr12:40881756-40881973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):11, 81

               
               
               Conread position:237-479
               
               
               Cow position:chr12:17252038-17252276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):92, 12

               
               
               Conread position:237-521
               
               
               Cow position:chr12:19261360-19261077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 12

               
               
               Conread position:237-522
               
               
               Cow position:chr12:35652700-35652982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):10, 140

               
               
               Conread position:237-524
               
               
               Cow position:chr12:7902637-7902927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:221
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):7, 74

               
               
               Conread position:237-539
               
               
               Cow position:chr12:24032652-24032362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 9

               
               
               Conread position:237-587
               
               
               Cow position:chr12:38774080-38774431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 12

               
               
               Conread position:237-595
               
               
               Cow position:chr12:25280337-25280692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:247
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):183, 43

               
               
               Conread position:237-596
               
               
               Cow position:chr12:4769085-4768726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 70

               
               
               Conread position:237-605
               
               
               Cow position:chr12:36544478-36544858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 74

               
               
               Conread position:237-674
               
               
               Cow position:chr12:22284957-22285375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 16

               
               
               Conread position:237-674
               
               
               Cow position:chr12:27802893-27803324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 15

               
               
               Conread position:237-674
               
               
               Cow position:chr12:41159747-41159322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 37

               
               
               Conread position:237-686
               
               
               Cow position:chr12:15938104-15938554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 37

               
               
               Conread position:238-406
               
               
               Cow position:chr12:41684668-41684504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:238-436
               
               
               Cow position:chr12:38343715-38343516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):88, 16

               
               
               Conread position:238-450
               
               
               Cow position:chr12:35469286-35469496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):191, 86

               
               
               Conread position:238-463
               
               
               Cow position:chr12:18563326-18563101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):186, 14

               
               
               Conread position:238-467
               
               
               Cow position:chr12:6187945-6188180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):87, 15

               
               
               Conread position:238-468
               
               
               Cow position:chr12:6206498-6206266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):91, 14

               
               
               Conread position:238-473
               
               
               Cow position:chr12:12233046-12232810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):147, 195

               
               
               Conread position:238-504
               
               
               Cow position:chr12:25343947-25343678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):77, 8

               
               
               Conread position:238-610
               
               
               Cow position:chr12:15204995-15204620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:257
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):181, 14

               
               
               Conread position:238-652
               
               
               Cow position:chr12:35779756-35780179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 14

               
               
               Conread position:238-665
               
               
               Cow position:chr12:42282675-42283102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 14

               
               
               Conread position:238-672
               
               
               Cow position:chr12:34333280-34332834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:298
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):56, 14

               
               
               Conread position:238-672
               
               
               Cow position:chr12:34385365-34385786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:307
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):230, 15

               
               
               Conread position:238-674
               
               
               Cow position:chr12:18420755-18421201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 123

               
               
               Conread position:238-674
               
               
               Cow position:chr12:40910119-40910565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 112

               
               
               Conread position:239-403
               
               
               Cow position:chr12:38031979-38032140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:239-417
               
               
               Cow position:chr12:30042892-30042711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:239-417
               
               
               Cow position:chr12:39149885-39150066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):87, 121

               
               
               Conread position:239-417
               
               
               Cow position:chr12:43551052-43551236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:239-422
               
               
               Cow position:chr12:45782387-45782208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:239-424
               
               
               Cow position:chr12:17701872-17702049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):119, 68

               
               
               Conread position:239-427
               
               
               Cow position:chr12:16386292-16386481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):83, 21

               
               
               Conread position:239-456
               
               
               Cow position:chr12:43974456-43974238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):96, 177

               
               
               Conread position:239-462
               
               
               Cow position:chr12:10827950-10827724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):89, 186

               
               
               Conread position:239-463
               
               
               Cow position:chr12:38154904-38155133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):80, 115

               
               
               Conread position:239-468
               
               
               Cow position:chr12:29966269-29966040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):79, 93

               
               
               Conread position:239-479
               
               
               Cow position:chr12:5554173-5554412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):173, 81

               
               
               Conread position:239-486
               
               
               Cow position:chr12:8859335-8859090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):157, 40

               
               
               Conread position:239-499
               
               
               Cow position:chr12:42749607-42749341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):70, 172

               
               
               Conread position:239-521
               
               
               Cow position:chr12:14223147-14222855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:212
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):81, 198

               
               
               Conread position:239-522
               
               
               Cow position:chr12:9766717-9767002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 34

               
               
               Conread position:239-522
               
               
               Cow position:chr12:38126357-38126649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):79, 224

               
               
               Conread position:239-528
               
               
               Cow position:chr12:25193205-25192924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):79, 130

               
               
               Conread position:239-539
               
               
               Cow position:chr12:23836498-23836184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):77, 34

               
               
               Conread position:239-552
               
               
               Cow position:chr12:46714541-46714217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):71, 103

               
               
               Conread position:239-564
               
               
               Cow position:chr12:42784471-42784139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):166, 34

               
               
               Conread position:239-567
               
               
               Cow position:chr12:4720108-4719774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 85

               
               
               Conread position:239-573
               
               
               Cow position:chr12:1998634-1998977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):99, 124

               
               
               Conread position:239-578
               
               
               Cow position:chr12:12637021-12637370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:252
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):87, 112

               
               
               Conread position:239-617
               
               
               Cow position:chr12:18103453-18103811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:267
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):176, 71

               
               
               Conread position:239-672
               
               
               Cow position:chr12:42180964-42181413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 96

               
               
               Conread position:239-673
               
               
               Cow position:chr12:30806017-30805585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 47

               
               
               Conread position:239-673
               
               
               Cow position:chr12:35368808-35368370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 58

               
               
               Conread position:239-673
               
               
               Cow position:chr12:35770860-35771305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 37

               
               
               Conread position:239-674
               
               
               Cow position:chr12:36119132-36118696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:282
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):94, 119

               
               
               Conread position:239-675
               
               
               Cow position:chr12:7884516-7884930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 97

               
               
               Conread position:239-675
               
               
               Cow position:chr12:19508400-19508847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:301
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):190, 124

               
               
               Conread position:239-675
               
               
               Cow position:chr12:35310518-35310948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 145

               
               
               Conread position:240-369
               
               
               Cow position:chr12:27421615-27421487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:240-382
               
               
               Cow position:chr12:38165378-38165520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:240-387
               
               
               Cow position:chr12:1952642-1952786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:240-387
               
               
               Cow position:chr12:44892372-44892223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):86, 117

               
               
               Conread position:240-392
               
               
               Cow position:chr12:2835568-2835414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:240-410
               
               
               Cow position:chr12:8711145-8710978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:240-417
               
               
               Cow position:chr12:20355386-20355201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:240-418
               
               
               Cow position:chr12:20654318-20654493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):41, 73

               
               
               Conread position:240-429
               
               
               Cow position:chr12:6480810-6480611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:240-445
               
               
               Cow position:chr12:3586277-3586074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):51, 27

               
               
               Conread position:240-468
               
               
               Cow position:chr12:5135396-5135166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):8, 90

               
               
               Conread position:240-477
               
               
               Cow position:chr12:47267144-47267387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:240-479
               
               
               Cow position:chr12:4594662-4594424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):135, 51

               
               
               Conread position:240-492
               
               
               Cow position:chr12:6688048-6687799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):26, 45

               
               
               Conread position:240-516
               
               
               Cow position:chr12:31269322-31269034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):10, 39

               
               
               Conread position:240-539
               
               
               Cow position:chr12:32051683-32051374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):60, 45

               
               
               Conread position:240-540
               
               
               Cow position:chr12:37008547-37008843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:218
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):60, 44

               
               
               Conread position:240-552
               
               
               Cow position:chr12:19258439-19258128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):81, 33

               
               
               Conread position:240-554
               
               
               Cow position:chr12:1333380-1333076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):175, 88

               
               
               Conread position:240-557
               
               
               Cow position:chr12:37169786-37170104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 42

               
               
               Conread position:240-572
               
               
               Cow position:chr12:15703331-15703673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):10, 41

               
               
               Conread position:240-595
               
               
               Cow position:chr12:12301090-12300730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 240

               
               
               Conread position:240-602
               
               
               Cow position:chr12:33976366-33975998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 319

               
               
               Conread position:240-604
               
               
               Cow position:chr12:7960424-7960783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 9

               
               
               Conread position:240-614
               
               
               Cow position:chr12:30210633-30210264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 69

               
               
               Conread position:240-623
               
               
               Cow position:chr12:33129417-33129041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:260
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):174, 198

               
               
               Conread position:240-626
               
               
               Cow position:chr12:4596636-4596223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 182

               
               
               Conread position:240-634
               
               
               Cow position:chr12:4162210-4162605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 70

               
               
               Conread position:240-671
               
               
               Cow position:chr12:19697557-19697144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:304
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):149, 37

               
               
               Conread position:240-672
               
               
               Cow position:chr12:20776766-20777203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 87

               
               
               Conread position:240-673
               
               
               Cow position:chr12:6241487-6241036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 200

               
               
               Conread position:240-673
               
               
               Cow position:chr12:9143550-9143120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 36

               
               
               Conread position:240-673
               
               
               Cow position:chr12:11836391-11835969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 31

               
               
               Conread position:240-673
               
               
               Cow position:chr12:15429434-15429873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 33

               
               
               Conread position:240-673
               
               
               Cow position:chr12:18518835-18518398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 96

               
               
               Conread position:240-673
               
               
               Cow position:chr12:34007462-34007026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 47

               
               
               Conread position:240-674
               
               
               Cow position:chr12:5714781-5714354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 45

               
               
               Conread position:240-674
               
               
               Cow position:chr12:36012449-36012883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:300
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):67, 180

               
               
               Conread position:240-674
               
               
               Cow position:chr12:39486592-39486155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 200

               
               
               Conread position:240-675
               
               
               Cow position:chr12:34465855-34466277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:309
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):175, 45

               
               
               Conread position:241-385
               
               
               Cow position:chr12:37718607-37718753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):87, 12

               
               
               Conread position:241-409
               
               
               Cow position:chr12:17254304-17254135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):113, 87

               
               
               Conread position:241-418
               
               
               Cow position:chr12:583342-583525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:241-422
               
               
               Cow position:chr12:6958381-6958199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):100, 87

               
               
               Conread position:241-422
               
               
               Cow position:chr12:30476674-30476486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:241-552
               
               
               Cow position:chr12:22485976-22485668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:229
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):9, 186

               
               
               Conread position:241-597
               
               
               Cow position:chr12:1889418-1889781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 44

               
               
               Conread position:241-643
               
               
               Cow position:chr12:34161565-34161174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 28

               
               
               Conread position:241-662
               
               
               Cow position:chr12:41084207-41083803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 32

               
               
               Conread position:241-674
               
               
               Cow position:chr12:41217230-41216785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 313

               
               
               Conread position:241-675
               
               
               Cow position:chr12:4341573-4341996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 43

               
               
               Conread position:241-675
               
               
               Cow position:chr12:17882017-17881597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 63

               
               
               Conread position:241-687
               
               
               Cow position:chr12:30919596-30919145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 207

               
               
               Conread position:241-687
               
               
               Cow position:chr12:42602075-42602527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:299
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):54, 116

               
               
               Conread position:241-696
               
               
               Cow position:chr12:9482140-9482594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 117

               
               
               Conread position:242-385
               
               
               Cow position:chr12:37742461-37742316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):86, 11

               
               
               Conread position:242-390
               
               
               Cow position:chr12:20637377-20637523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:242-411
               
               
               Cow position:chr12:38679209-38679041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:242-422
               
               
               Cow position:chr12:17108315-17108141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:242-436
               
               
               Cow position:chr12:46065026-46064830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):76, 29

               
               
               Conread position:242-460
               
               
               Cow position:chr12:2734750-2734966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):172, 77

               
               
               Conread position:242-468
               
               
               Cow position:chr12:45167847-45168086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):65, 31

               
               
               Conread position:242-474
               
               
               Cow position:chr12:11660088-11659855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):49, 98

               
               
               Conread position:242-477
               
               
               Cow position:chr12:31883507-31883263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):58, 43

               
               
               Conread position:242-503
               
               
               Cow position:chr12:42286125-42285865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:198
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):173, 43

               
               
               Conread position:242-539
               
               
               Cow position:chr12:7110369-7110061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 204

               
               
               Conread position:242-552
               
               
               Cow position:chr12:23446877-23446571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):182, 47

               
               
               Conread position:242-672
               
               
               Cow position:chr12:16605508-16605918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:292
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):113, 63

               
               
               Conread position:242-672
               
               
               Cow position:chr12:25561527-25561098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 78

               
               
               Conread position:242-673
               
               
               Cow position:chr12:30170813-30170394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 48

               
               
               Conread position:242-675
               
               
               Cow position:chr12:30745877-30745437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 172

               
               
               Conread position:243-412
               
               
               Cow position:chr12:4014262-4014442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:243-412
               
               
               Cow position:chr12:17490373-17490206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):81, 54

               
               
               Conread position:243-422
               
               
               Cow position:chr12:4512291-4512470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):175, 90

               
               
               Conread position:244-412
               
               
               Cow position:chr12:44861098-44861269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:244-528
               
               
               Cow position:chr12:26576051-26575759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):174, 76

               
               
               Conread position:244-539
               
               
               Cow position:chr12:3371695-3371998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):32, 98

               
               
               Conread position:245-448
               
               
               Cow position:chr12:26147010-26147217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):64, 77

               
               
               Conread position:245-458
               
               
               Cow position:chr12:25814315-25814090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:245-484
               
               
               Cow position:chr12:37256176-37255935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):43, 39

               
               
               Conread position:245-486
               
               
               Cow position:chr12:40157870-40158107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):177, 74

               
               
               Conread position:245-509
               
               
               Cow position:chr12:23939376-23939114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):83, 5

               
               
               Conread position:245-535
               
               
               Cow position:chr12:29674982-29675272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:216
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):83, 9

               
               
               Conread position:245-552
               
               
               Cow position:chr12:3623849-3623543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):179, 76

               
               
               Conread position:245-615
               
               
               Cow position:chr12:33851514-33851140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):230, 88

               
               
               Conread position:245-669
               
               
               Cow position:chr12:5635294-5635717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 90

               
               
               Conread position:245-674
               
               
               Cow position:chr12:42879857-42879432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 105

               
               
               Conread position:246-373
               
               
               Cow position:chr12:3579641-3579514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:246-447
               
               
               Cow position:chr12:23714829-23714628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):168, 59

               
               
               Conread position:246-474
               
               
               Cow position:chr12:13911419-13911655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):126, 63

               
               
               Conread position:246-521
               
               
               Cow position:chr12:44202836-44203110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):9, 46

               
               
               Conread position:246-630
               
               
               Cow position:chr12:1031121-1030750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 39

               
               
               Conread position:246-672
               
               
               Cow position:chr12:32169703-32169264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 43

               
               
               Conread position:249-448
               
               
               Cow position:chr12:43855044-43854847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):159, 70

               
               
               Conread position:249-468
               
               
               Cow position:chr12:45069230-45069455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):41, 85

               
               
               Conread position:249-551
               
               
               Cow position:chr12:24116219-24116514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):165, 58

               
               
               Conread position:249-671
               
               
               Cow position:chr12:48415366-48415784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):231, 34

               
               
               Conread position:249-673
               
               
               Cow position:chr12:9914935-9914516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 36

               
               
               Conread position:249-675
               
               
               Cow position:chr12:18021032-18020577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 168

               
               
               Conread position:250-464
               
               
               Cow position:chr12:15389223-15389008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):88, 69

               
               
               Conread position:250-472
               
               
               Cow position:chr12:24181296-24181078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):170, 69

               
               
               Conread position:250-475
               
               
               Cow position:chr12:33949053-33948829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):164, 21

               
               
               Conread position:250-674
               
               
               Cow position:chr12:30590922-30590502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 38

               
               
               Conread position:251-465
               
               
               Cow position:chr12:24166797-24167008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):163, 69

               
               
               Conread position:251-611
               
               
               Cow position:chr12:25027604-25027997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:259
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):75, 102

               
               
               Conread position:251-633
               
               
               Cow position:chr12:15163309-15162917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 201

               
               
               Conread position:251-643
               
               
               Cow position:chr12:42953745-42954137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:254
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):86, 112

               
               
               Conread position:252-422
               
               
               Cow position:chr12:44542414-44542246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):163, 73

               
               
               Conread position:252-510
               
               
               Cow position:chr12:3371397-3371654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):154, 19

               
               
               Conread position:252-561
               
               
               Cow position:chr12:36790662-36790976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:222
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):164, 81

               
               
               Conread position:252-675
               
               
               Cow position:chr12:12198758-12199180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:279
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):98, 214

               
               
               Conread position:253-674
               
               
               Cow position:chr12:42967145-42966726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 53

               
               
               Conread position:254-446
               
               
               Cow position:chr12:38552342-38552155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:254-467
               
               
               Cow position:chr12:3616132-3615936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:254-602
               
               
               Cow position:chr12:19400667-19401010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):72, 97

               
               
               Conread position:254-605
               
               
               Cow position:chr12:30194842-30194500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:262
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):212, 19

               
               
               Conread position:254-643
               
               
               Cow position:chr12:23574919-23574527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 188

               
               
               Conread position:254-671
               
               
               Cow position:chr12:31532260-31532675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 19

               
               
               Conread position:254-672
               
               
               Cow position:chr12:37993573-37993998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 31

               
               
               Conread position:257-472
               
               
               Cow position:chr12:26777048-26777260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):156, 63

               
               
               Conread position:257-526
               
               
               Cow position:chr12:16056709-16056985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):69, 271

               
               
               Conread position:257-673
               
               
               Cow position:chr12:6410590-6411001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 25

               
               
               Conread position:258-427
               
               
               Cow position:chr12:41220868-41221033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:258-451
               
               
               Cow position:chr12:12532346-12532541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):70, 35

               
               
               Conread position:258-573
               
               
               Cow position:chr12:23916984-23916665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:231
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):226, 66

               
               
               Conread position:258-668
               
               
               Cow position:chr12:15122470-15122068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 75

               
               
               Conread position:258-674
               
               
               Cow position:chr12:22515593-22516011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 62

               
               
               Conread position:259-528
               
               
               Cow position:chr12:17269945-17269672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):155, 75

               
               
               Conread position:260-675
               
               
               Cow position:chr12:15784067-15783658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:268
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):73, 264

               
               
               Conread position:261-468
               
               
               Cow position:chr12:6754333-6754129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):154, 49

               
               
               Conread position:261-630
               
               
               Cow position:chr12:24663262-24662885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 184

               
               
               Conread position:264-672
               
               
               Cow position:chr12:5631745-5632146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 22

               
               
               Conread position:265-604
               
               
               Cow position:chr12:25917138-25917471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 86

               
               
               Conread position:265-628
               
               
               Cow position:chr12:28749082-28748706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):68, 137

               
               
               Conread position:266-675
               
               
               Cow position:chr12:19154480-19154886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:282
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):10, 20

               
               
               Conread position:268-673
               
               
               Cow position:chr12:42254804-42254385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 165

               
               
               Conread position:268-674
               
               
               Cow position:chr12:37771001-37770601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 19

               
               
               Conread position:269-574
               
               
               Cow position:chr12:35124025-35123714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):41, 5

               
               
               Conread position:269-594
               
               
               Cow position:chr12:7299327-7299666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:227
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):78, 55

               
               
               Conread position:277-475
               
               
               Cow position:chr12:7457414-7457619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):10, 157

               
               
               Conread position:277-673
               
               
               Cow position:chr12:18572746-18572368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 33

               
               
               Conread position:277-673
               
               
               Cow position:chr12:30661823-30662223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 148

               
               
               Conread position:280-477
               
               
               Cow position:chr12:26151339-26151536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):61, 31

               
               
               Conread position:281-673
               
               
               Cow position:chr12:33323371-33323772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 7

               
               
               Conread position:286-571
               
               
               Cow position:chr12:44920149-44919859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):40, 23

               
               
               Conread position:289-672
               
               
               Cow position:chr12:3197383-3196981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:287
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):37, 113

               
               
               Conread position:291-671
               
               
               Cow position:chr12:7000494-7000863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 42

               
               
               Conread position:292-577
               
               
               Cow position:chr12:19507743-19507451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):122, 7

               
               
               Conread position:294-672
               
               
               Cow position:chr12:28256945-28257318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:263
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):30, 175

               
               
               Conread position:295-671
               
               
               Cow position:chr12:30753829-30753457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 5

               
               
               Conread position:296-648
               
               
               Cow position:chr12:18765864-18766229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 125

               
               
               Conread position:299-458
               
               
               Cow position:chr12:12912834-12912994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):17, 12

               
               
               Conread position:301-473
               
               
               Cow position:chr12:4793299-4793125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):20, 33

               
               
               Conread position:301-539
               
               
               Cow position:chr12:42174519-42174281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):37, 134

               
               
               Conread position:301-673
               
               
               Cow position:chr12:27562743-27563110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):166, 12

               
               
               Conread position:306-468
               
               
               Cow position:chr12:36994016-36994183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):20, 135

               
               
               Conread position:306-671
               
               
               Cow position:chr12:37732683-37733048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:257
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):104, 254

               
               
               Conread position:307-673
               
               
               Cow position:chr12:11109853-11109496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:255
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):19, 53

               
               
               Conread position:308-468
               
               
               Cow position:chr12:32753608-32753446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:308-535
               
               
               Cow position:chr12:46120737-46120965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:179
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):109, 122

               
               
               Conread position:308-652
               
               
               Cow position:chr12:23798193-23797851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 26

               
               
               Conread position:308-673
               
               
               Cow position:chr12:31198865-31198495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:251
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):8, 134

               
               
               Conread position:309-674
               
               
               Cow position:chr12:15173914-15173544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:254
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):35, 15

               
               
               Conread position:310-443
               
               
               Cow position:chr12:27572148-27572282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):109, 23

               
               
               Conread position:310-465
               
               
               Cow position:chr12:44901350-44901197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):108, 23

               
               
               Conread position:310-466
               
               
               Cow position:chr12:15260853-15260698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):108, 17

               
               
               Conread position:310-472
               
               
               Cow position:chr12:7920336-7920171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):14, 25

               
               
               Conread position:310-478
               
               
               Cow position:chr12:4797391-4797223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):105, 22

               
               
               Conread position:310-506
               
               
               Cow position:chr12:33319574-33319774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):16, 125

               
               
               Conread position:310-584
               
               
               Cow position:chr12:6485120-6485395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):103, 97

               
               
               Conread position:310-644
               
               
               Cow position:chr12:29770485-29770817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 93

               
               
               Conread position:310-671
               
               
               Cow position:chr12:34148262-34148622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 135

               
               
               Conread position:310-673
               
               
               Cow position:chr12:22882149-22881778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 35

               
               
               Conread position:310-673
               
               
               Cow position:chr12:25321006-25320650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 23

               
               
               Conread position:310-673
               
               
               Cow position:chr12:31959971-31959620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 25

               
               
               Conread position:310-673
               
               
               Cow position:chr12:41581203-41580843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 105

               
               
               Conread position:310-673
               
               
               Cow position:chr12:42698152-42698496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 96

               
               
               Conread position:310-674
               
               
               Cow position:chr12:32715134-32714768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 24

               
               
               Conread position:310-675
               
               
               Cow position:chr12:2711591-2711217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 163

               
               
               Conread position:310-675
               
               
               Cow position:chr12:6163947-6164304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 17

               
               
               Conread position:311-506
               
               
               Cow position:chr12:5609421-5609617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):51, 22

               
               
               Conread position:311-638
               
               
               Cow position:chr12:24577160-24577492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):32, 49

               
               
               Conread position:311-659
               
               
               Cow position:chr12:17774885-17774546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):30, 22

               
               
               Conread position:311-672
               
               
               Cow position:chr12:3510645-3510292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 89

               
               
               Conread position:312-605
               
               
               Cow position:chr12:25452357-25452653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:214
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):112, 22

               
               
               Conread position:313-539
               
               
               Cow position:chr12:38184683-38184458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):106, 43

               
               
               Conread position:313-628
               
               
               Cow position:chr12:27037361-27037677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 20

               
               
               Conread position:313-672
               
               
               Cow position:chr12:15531144-15530791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:255
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):104, 61

               
               
               Conread position:313-673
               
               
               Cow position:chr12:29969669-29969303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 15

               
               
               Conread position:314-510
               
               
               Cow position:chr12:18523659-18523453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:314-667
               
               
               Cow position:chr12:44595722-44596081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 19

               
               
               Conread position:314-673
               
               
               Cow position:chr12:2286669-2286308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):105, 42

               
               
               Conread position:314-673
               
               
               Cow position:chr12:6720417-6720047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 214

               
               
               Conread position:314-673
               
               
               Cow position:chr12:7978125-7977774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:257
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):154, 19

               
               
               Conread position:315-551
               
               
               Cow position:chr12:3599673-3599905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):34, 18

               
               
               Conread position:315-673
               
               
               Cow position:chr12:2813314-2812950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 19

               
               
               Conread position:316-673
               
               
               Cow position:chr12:6210071-6210430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 207

               
               
               Conread position:316-677
               
               
               Cow position:chr12:44517652-44518013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 17

               
               
               Conread position:317-674
               
               
               Cow position:chr12:19714954-19715302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 82

               
               
               Conread position:318-674
               
               
               Cow position:chr12:30438319-30437976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 6

               
               
               Conread position:319-557
               
               
               Cow position:chr12:31517087-31517328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):95, 120

               
               
               Conread position:320-463
               
               
               Cow position:chr12:27357471-27357326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):6, 116

               
               
               Conread position:320-528
               
               
               Cow position:chr12:45090270-45090485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):103, 13

               
               
               Conread position:320-561
               
               
               Cow position:chr12:41215802-41216049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:188
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):161, 93

               
               
               Conread position:320-653
               
               
               Cow position:chr12:28213593-28213265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:242
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):6, 63

               
               
               Conread position:320-660
               
               
               Cow position:chr12:5940426-5940083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 153

               
               
               Conread position:320-670
               
               
               Cow position:chr12:25177516-25177864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 13

               
               
               Conread position:321-492
               
               
               Cow position:chr12:33729566-33729742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):5, 15

               
               
               Conread position:321-674
               
               
               Cow position:chr12:33458229-33457874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:254
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):100, 93

               
               
               Conread position:322-651
               
               
               Cow position:chr12:24211488-24211163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 97

               
               
               Conread position:322-673
               
               
               Cow position:chr12:37728224-37727874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:247
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):97, 5

               
               
               Conread position:322-674
               
               
               Cow position:chr12:18943578-18943918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 17

               
               
               Conread position:326-675
               
               
               Cow position:chr12:29483809-29484166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 93

               
               
               Conread position:327-671
               
               
               Cow position:chr12:17001334-17000987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 108

               
               
               Conread position:327-673
               
               
               Cow position:chr12:28582434-28582765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:256
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):157, 26

               
               
               Conread position:327-673
               
               
               Cow position:chr12:31429495-31429834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 92

               
               
               Conread position:327-674
               
               
               Cow position:chr12:16543502-16543843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:236
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):19, 114

               
               
               Conread position:327-674
               
               
               Cow position:chr12:47804232-47803880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:254
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):87, 55

               
               
               Conread position:328-673
               
               
               Cow position:chr12:46314629-46314966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):87, 95

               
               
               Conread position:328-675
               
               
               Cow position:chr12:19691159-19691510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 104

               
               
               Conread position:329-469
               
               
               Cow position:chr12:4135151-4135009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):95, 90

               
               
               Conread position:329-673
               
               
               Cow position:chr12:5906130-5905784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 102

               
               
               Conread position:330-539
               
               
               Cow position:chr12:42234132-42233919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):89, 17

               
               
               Conread position:331-579
               
               
               Cow position:chr12:23855904-23855652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):74, 25

               
               
               Conread position:337-466
               
               
               Cow position:chr12:15641041-15641173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):77, 99

               
               
               Conread position:337-629
               
               
               Cow position:chr12:3906540-3906239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 29

               
               
               Conread position:337-671
               
               
               Cow position:chr12:5801109-5800764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 85

               
               
               Conread position:337-671
               
               
               Cow position:chr12:12304446-12304126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:240
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):128, 65

               
               
               Conread position:337-672
               
               
               Cow position:chr12:40807468-40807124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 186

               
               
               Conread position:337-673
               
               
               Cow position:chr12:43942547-43942207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:242
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):30, 108

               
               
               Conread position:338-673
               
               
               Cow position:chr12:17717127-17716810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 20

               
               
               Conread position:339-632
               
               
               Cow position:chr12:18963864-18964161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:211
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):89, 269

               
               
               Conread position:339-673
               
               
               Cow position:chr12:8868818-8869156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 55

               
               
               Conread position:340-572
               
               
               Cow position:chr12:25110378-25110612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):127, 92

               
               
               Conread position:344-541
               
               
               Cow position:chr12:3092521-3092717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):70, 91

               
               
               Conread position:344-590
               
               
               Cow position:chr12:10491330-10491077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):76, 55

               
               
               Conread position:345-628
               
               
               Cow position:chr12:12578977-12579253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):122, 11

               
               
               Conread position:347-539
               
               
               Cow position:chr12:9894838-9894645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):71, 88

               
               
               Conread position:347-652
               
               
               Cow position:chr12:38484339-38484650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):109, 9

               
               
               Conread position:347-674
               
               
               Cow position:chr12:19664476-19664790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):70, 108

               
               
               Conread position:354-668
               
               
               Cow position:chr12:5658028-5658341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):61, 70

               
               
               Conread position:364-673
               
               
               Cow position:chr12:1223306-1223616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):110, 13

               
               
               Conread position:367-552
               
               
               Cow position:chr12:40360723-40360534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):63, 154

               
               
               Conread position:372-528
               
               
               Cow position:chr12:37137495-37137650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):52, 47

               
               
               Conread position:375-557
               
               
               Cow position:chr12:18420498-18420309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):50, 43

               
               
               Conread position:376-673
               
               
               Cow position:chr12:20326801-20326498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 111

               
               
               Conread position:392-674
               
               
               Cow position:chr12:26317476-26317185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):22, 46

               
               
               Conread position:399-586
               
               
               Cow position:chr12:29921781-29921973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):20, 39

               
               
               Conread position:399-664
               
               
               Cow position:chr12:24107545-24107802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):86, 16

               
               
               Conread position:403-629
               
               
               Cow position:chr12:12030828-12031063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):16, 35

               
               
               Conread position:403-673
               
               
               Cow position:chr12:44013844-44014113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):87, 10

               
               
               Conread position:405-605
               
               
               Cow position:chr12:4116484-4116284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):116, 30

               
               
               Conread position:405-692
               
               
               Cow position:chr12:12699766-12700067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):25, 119

               
               
               Conread position:408-674
               
               
               Cow position:chr12:29411497-29411763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):67, 27

               
               
               Conread position:409-637
               
               
               Cow position:chr12:30476473-30476240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:181
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):69, 27

               
               
               Conread position:417-598
               
               
               Cow position:chr12:37536507-37536691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):106, 19

               
               
               Conread position:418-633
               
               
               Cow position:chr12:38454891-38454685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):58, 17

               
               
               Conread position:425-674
               
               
               Cow position:chr12:41214346-41214593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):59, 10

               
               
               Conread position:433-633
               
               
               Cow position:chr12:38511868-38512075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):51, 171

               
               
               Conread position:434-625
               
               
               Cow position:chr12:18021559-18021368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):93, 48

               
               
               Conread position:434-667
               
               
               Cow position:chr12:17702259-17702500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 89

               
               
               Conread position:434-673
               
               
               Cow position:chr12:32391815-32391572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:191
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):96, 89

               
               
               Conread position:434-675
               
               
               Cow position:chr12:19039643-19039887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):96, 189

               
               
               Conread position:434-675
               
               
               Cow position:chr12:25456086-25455839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:189
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):50, 36

               
               
               Conread position:435-673
               
               
               Cow position:chr12:24032971-24032733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:190
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):33, 50

               
               
               Conread position:436-586
               
               
               Cow position:chr12:7191297-7191452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):49, 35

               
               
               Conread position:436-635
               
               
               Cow position:chr12:44559553-44559350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):35, 48

               
               
               Conread position:436-671
               
               
               Cow position:chr12:28650922-28650683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):45, 86

               
               
               Conread position:436-673
               
               
               Cow position:chr12:46143787-46143548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):100, 46

               
               
               Conread position:439-652
               
               
               Cow position:chr12:6226690-6226899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):30, 44

               
               
               Conread position:441-663
               
               
               Cow position:chr12:3994918-3994686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):12, 19

               
               
               Conread position:448-673
               
               
               Cow position:chr12:40270147-40270359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):79, 17

               
               
               Conread position:449-600
               
               
               Cow position:chr12:2805097-2805248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):66, 83

               
               
               Conread position:458-600
               
               
               Cow position:chr12:29694101-29694251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):26, 122

               
               
               Conread position:468-663
               
               
               Cow position:chr12:28804929-28804730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):18, 52

               
               
               Conread position:483-672
               
               
               Cow position:chr12:1848617-1848810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:483-674
               
               
               Cow position:chr12:4134588-4134390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):44, 36

               
               
               Conread position:487-692
               
               
               Cow position:chr12:3880339-3880547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):40, 32

               
               
               Conread position:162-412
               
               
               Cow position:chr13:55775064-55775316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):70, 166

               
               
               Conread position:162-594
               
               
               Cow position:chr13:18058550-18058104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 24

               
               
               Conread position:202-508
               
               
               Cow position:chr13:21171824-21171517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):19, 44

               
               
               Conread position:215-671
               
               
               Cow position:chr13:20864225-20863800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:314
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):14, 42

               
               
               Conread position:225-629
               
               
               Cow position:chr13:53573748-53574145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:276
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):75, 47

               
               
               Conread position:226-406
               
               
               Cow position:chr13:6972151-6972333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):74, 59

               
               
               Conread position:226-675
               
               
               Cow position:chr13:17821487-17821037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 105

               
               
               Conread position:228-465
               
               
               Cow position:chr13:37614426-37614180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):15, 215

               
               
               Conread position:230-652
               
               
               Cow position:chr13:61188302-61188734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:286
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):10, 135

               
               
               Conread position:230-675
               
               
               Cow position:chr13:33875446-33875884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:298
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):17, 128

               
               
               Conread position:230-675
               
               
               Cow position:chr13:34507669-34508098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:304
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):17, 56

               
               
               Conread position:230-675
               
               
               Cow position:chr13:42860793-42860348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:293
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):10, 48

               
               
               Conread position:232-574
               
               
               Cow position:chr13:17438085-17437743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):61, 192

               
               
               Conread position:233-635
               
               
               Cow position:chr13:5758553-5758163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 16

               
               
               Conread position:234-389
               
               
               Cow position:chr13:39775711-39775550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:234-392
               
               
               Cow position:chr13:55007990-55007836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:234-409
               
               
               Cow position:chr13:16711126-16711302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):24, 15

               
               
               Conread position:234-409
               
               
               Cow position:chr13:53619778-53619957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:234-412
               
               
               Cow position:chr13:26395242-26395417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):99, 14

               
               
               Conread position:234-412
               
               
               Cow position:chr13:28081494-28081678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:234-417
               
               
               Cow position:chr13:20042484-20042304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):94, 18

               
               
               Conread position:234-421
               
               
               Cow position:chr13:37555093-37554908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):9, 86

               
               
               Conread position:234-421
               
               
               Cow position:chr13:48126884-48127074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):94, 18

               
               
               Conread position:234-422
               
               
               Cow position:chr13:8537598-8537789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):95, 15

               
               
               Conread position:234-422
               
               
               Cow position:chr13:25521145-25520948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):61, 108

               
               
               Conread position:234-431
               
               
               Cow position:chr13:24094538-24094339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):94, 182

               
               
               Conread position:234-447
               
               
               Cow position:chr13:17058075-17057855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):41, 12

               
               
               Conread position:234-451
               
               
               Cow position:chr13:42849350-42849136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):45, 15

               
               
               Conread position:234-466
               
               
               Cow position:chr13:2776064-2776300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):94, 18

               
               
               Conread position:234-475
               
               
               Cow position:chr13:43525470-43525214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):86, 24

               
               
               Conread position:234-476
               
               
               Cow position:chr13:15083442-15083681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:190
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):12, 21

               
               
               Conread position:234-491
               
               
               Cow position:chr13:50457631-50457895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):92, 18

               
               
               Conread position:234-505
               
               
               Cow position:chr13:17350123-17350405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):78, 15

               
               
               Conread position:234-521
               
               
               Cow position:chr13:6860954-6861250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:213
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):85, 195

               
               
               Conread position:234-521
               
               
               Cow position:chr13:14411670-14411954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):92, 159

               
               
               Conread position:234-535
               
               
               Cow position:chr13:28291099-28291407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):91, 119

               
               
               Conread position:234-579
               
               
               Cow position:chr13:25380724-25381092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:260
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):91, 18

               
               
               Conread position:234-586
               
               
               Cow position:chr13:6663976-6663614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:254
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):73, 15

               
               
               Conread position:234-588
               
               
               Cow position:chr13:11321821-11321477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):183, 40

               
               
               Conread position:234-603
               
               
               Cow position:chr13:38697836-38698205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:248
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):190, 41

               
               
               Conread position:234-610
               
               
               Cow position:chr13:54582652-54583038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 100

               
               
               Conread position:234-657
               
               
               Cow position:chr13:19223430-19223853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 167

               
               
               Conread position:234-657
               
               
               Cow position:chr13:37593166-37592734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 19

               
               
               Conread position:234-659
               
               
               Cow position:chr13:46111747-46112173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 51

               
               
               Conread position:234-667
               
               
               Cow position:chr13:37803658-37804093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 202

               
               
               Conread position:234-670
               
               
               Cow position:chr13:10989294-10988853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 18

               
               
               Conread position:234-672
               
               
               Cow position:chr13:36876843-36877291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 87

               
               
               Conread position:234-673
               
               
               Cow position:chr13:15041698-15041252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 216

               
               
               Conread position:234-673
               
               
               Cow position:chr13:15958401-15958841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:293
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):184, 68

               
               
               Conread position:234-673
               
               
               Cow position:chr13:17114603-17114160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 128

               
               
               Conread position:234-673
               
               
               Cow position:chr13:17745036-17745459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 93

               
               
               Conread position:234-673
               
               
               Cow position:chr13:24369367-24369805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 17

               
               
               Conread position:234-673
               
               
               Cow position:chr13:25695988-25695548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 51

               
               
               Conread position:234-675
               
               
               Cow position:chr13:33054593-33054172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 15

               
               
               Conread position:234-690
               
               
               Cow position:chr13:9906507-9906981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 119

               
               
               Conread position:235-369
               
               
               Cow position:chr13:30809594-30809460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):90, 17

               
               
               Conread position:235-392
               
               
               Cow position:chr13:56019216-56019058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):91, 14

               
               
               Conread position:235-399
               
               
               Cow position:chr13:47651635-47651473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:235-410
               
               
               Cow position:chr13:23399548-23399720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:235-422
               
               
               Cow position:chr13:11146834-11147024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):93, 18

               
               
               Conread position:235-426
               
               
               Cow position:chr13:16099351-16099148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:235-431
               
               
               Cow position:chr13:30148775-30148585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):184, 41

               
               
               Conread position:235-437
               
               
               Cow position:chr13:369345-369143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):93, 17

               
               
               Conread position:235-463
               
               
               Cow position:chr13:8699962-8699728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):75, 14

               
               
               Conread position:235-470
               
               
               Cow position:chr13:14644834-14645068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):173, 15

               
               
               Conread position:235-482
               
               
               Cow position:chr13:44003481-44003727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):78, 11

               
               
               Conread position:235-597
               
               
               Cow position:chr13:20174518-20174898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 17

               
               
               Conread position:235-660
               
               
               Cow position:chr13:46525649-46525235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 156

               
               
               Conread position:235-670
               
               
               Cow position:chr13:14063741-14063307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 84

               
               
               Conread position:235-672
               
               
               Cow position:chr13:45074123-45073716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):245, 75

               
               
               Conread position:235-673
               
               
               Cow position:chr13:6189821-6189410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 93

               
               
               Conread position:235-673
               
               
               Cow position:chr13:7076021-7076476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 14

               
               
               Conread position:235-673
               
               
               Cow position:chr13:15193108-15192674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 181

               
               
               Conread position:235-673
               
               
               Cow position:chr13:18989503-18989925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:298
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):72, 17

               
               
               Conread position:235-673
               
               
               Cow position:chr13:21288305-21287870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 84

               
               
               Conread position:235-675
               
               
               Cow position:chr13:17021945-17021498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 14

               
               
               Conread position:235-686
               
               
               Cow position:chr13:15289138-15288692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):238, 14

               
               
               Conread position:236-411
               
               
               Cow position:chr13:20520092-20520270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):90, 13

               
               
               Conread position:236-426
               
               
               Cow position:chr13:9492558-9492737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:236-457
               
               
               Cow position:chr13:52536350-52536568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):14, 52

               
               
               Conread position:236-461
               
               
               Cow position:chr13:49356267-49356042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):95, 16

               
               
               Conread position:236-463
               
               
               Cow position:chr13:47243771-47243546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:175
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):83, 25

               
               
               Conread position:236-468
               
               
               Cow position:chr13:1462510-1462283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):71, 13

               
               
               Conread position:236-468
               
               
               Cow position:chr13:55080920-55081156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):57, 17

               
               
               Conread position:236-471
               
               
               Cow position:chr13:45108619-45108397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):177, 13

               
               
               Conread position:236-472
               
               
               Cow position:chr13:42640162-42640401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):41, 13

               
               
               Conread position:236-538
               
               
               Cow position:chr13:52477865-52477561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 83

               
               
               Conread position:236-549
               
               
               Cow position:chr13:54128817-54128498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 49

               
               
               Conread position:236-554
               
               
               Cow position:chr13:7265325-7265020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):181, 72

               
               
               Conread position:236-571
               
               
               Cow position:chr13:21136131-21135777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 209

               
               
               Conread position:236-596
               
               
               Cow position:chr13:18696605-18696989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 13

               
               
               Conread position:236-596
               
               
               Cow position:chr13:26698715-26698350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 11

               
               
               Conread position:236-669
               
               
               Cow position:chr13:151751-152166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 38

               
               
               Conread position:236-673
               
               
               Cow position:chr13:5263498-5263066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 83

               
               
               Conread position:236-673
               
               
               Cow position:chr13:8362966-8362526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 174

               
               
               Conread position:236-673
               
               
               Cow position:chr13:54701961-54702410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 45

               
               
               Conread position:236-673
               
               
               Cow position:chr13:55674428-55673985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 14

               
               
               Conread position:237-408
               
               
               Cow position:chr13:23823247-23823082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:237-409
               
               
               Cow position:chr13:27198697-27198861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:237-412
               
               
               Cow position:chr13:52913659-52913829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:237-419
               
               
               Cow position:chr13:29665799-29665983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):88, 171

               
               
               Conread position:237-430
               
               
               Cow position:chr13:21277674-21277490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):177, 12

               
               
               Conread position:237-463
               
               
               Cow position:chr13:14795988-14796215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):89, 15

               
               
               Conread position:237-467
               
               
               Cow position:chr13:26960015-26959792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):153, 15

               
               
               Conread position:237-491
               
               
               Cow position:chr13:34873367-34873629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):91, 190

               
               
               Conread position:237-514
               
               
               Cow position:chr13:18197824-18197546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:209
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):175, 10

               
               
               Conread position:237-539
               
               
               Cow position:chr13:56035075-56034773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:219
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):183, 87

               
               
               Conread position:237-578
               
               
               Cow position:chr13:49204795-49205105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:233
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):91, 12

               
               
               Conread position:237-583
               
               
               Cow position:chr13:25579414-25579053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:254
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):21, 49

               
               
               Conread position:237-640
               
               
               Cow position:chr13:55582976-55583386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:282
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):88, 114

               
               
               Conread position:237-651
               
               
               Cow position:chr13:57475635-57475218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 160

               
               
               Conread position:237-652
               
               
               Cow position:chr13:52749681-52749289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):302, 49

               
               
               Conread position:237-670
               
               
               Cow position:chr13:57770200-57769802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:292
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):294, 12

               
               
               Conread position:237-671
               
               
               Cow position:chr13:19033338-19033764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:293
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):91, 15

               
               
               Conread position:237-673
               
               
               Cow position:chr13:26480421-26479994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 35

               
               
               Conread position:237-674
               
               
               Cow position:chr13:13088815-13089245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 12

               
               
               Conread position:237-674
               
               
               Cow position:chr13:37985965-37985529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 15

               
               
               Conread position:237-675
               
               
               Cow position:chr13:20784376-20784810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 86

               
               
               Conread position:238-387
               
               
               Cow position:chr13:242416-242566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):78, 9

               
               
               Conread position:238-410
               
               
               Cow position:chr13:16525448-16525269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):10, 150

               
               
               Conread position:238-413
               
               
               Cow position:chr13:43576794-43576971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):88, 15

               
               
               Conread position:238-417
               
               
               Cow position:chr13:24796666-24796839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:238-421
               
               
               Cow position:chr13:3153531-3153716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):88, 14

               
               
               Conread position:238-430
               
               
               Cow position:chr13:31507659-31507467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):50, 83

               
               
               Conread position:238-439
               
               
               Cow position:chr13:28605611-28605407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):88, 15

               
               
               Conread position:238-464
               
               
               Cow position:chr13:6486471-6486241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):7, 181

               
               
               Conread position:238-465
               
               
               Cow position:chr13:9707963-9707738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):41, 11

               
               
               Conread position:238-498
               
               
               Cow position:chr13:20534681-20534939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):10, 37

               
               
               Conread position:238-503
               
               
               Cow position:chr13:52641167-52640900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):90, 15

               
               
               Conread position:238-521
               
               
               Cow position:chr13:55161993-55162279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):36, 97

               
               
               Conread position:238-528
               
               
               Cow position:chr13:25978410-25978117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):88, 9

               
               
               Conread position:238-535
               
               
               Cow position:chr13:16038500-16038211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):181, 90

               
               
               Conread position:238-552
               
               
               Cow position:chr13:620465-620158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):88, 116

               
               
               Conread position:238-566
               
               
               Cow position:chr13:19240222-19240553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):180, 47

               
               
               Conread position:238-567
               
               
               Cow position:chr13:15194938-15194614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 82

               
               
               Conread position:238-592
               
               
               Cow position:chr13:20360059-20360413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 14

               
               
               Conread position:238-596
               
               
               Cow position:chr13:23512164-23512514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):176, 14

               
               
               Conread position:238-605
               
               
               Cow position:chr13:28139365-28139722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):43, 14

               
               
               Conread position:238-622
               
               
               Cow position:chr13:29831643-29831265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 11

               
               
               Conread position:238-630
               
               
               Cow position:chr13:49823807-49824204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 14

               
               
               Conread position:238-665
               
               
               Cow position:chr13:32282910-32283339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 15

               
               
               Conread position:238-670
               
               
               Cow position:chr13:1231426-1231869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:303
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):180, 14

               
               
               Conread position:238-670
               
               
               Cow position:chr13:45352810-45353263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 47

               
               
               Conread position:238-672
               
               
               Cow position:chr13:47007930-47007517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 81

               
               
               Conread position:238-672
               
               
               Cow position:chr13:52893932-52894363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 14

               
               
               Conread position:238-673
               
               
               Cow position:chr13:2773899-2774344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 11

               
               
               Conread position:238-673
               
               
               Cow position:chr13:16247428-16247873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:297
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):88, 11

               
               
               Conread position:238-673
               
               
               Cow position:chr13:37069121-37069569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 267

               
               
               Conread position:238-674
               
               
               Cow position:chr13:12045563-12045113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:298
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):99, 306

               
               
               Conread position:238-675
               
               
               Cow position:chr13:20893860-20893420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:292
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):69, 15

               
               
               Conread position:238-675
               
               
               Cow position:chr13:60509342-60508894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 238

               
               
               Conread position:238-691
               
               
               Cow position:chr13:21275639-21276094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 51

               
               
               Conread position:239-386
               
               
               Cow position:chr13:41474659-41474802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):15, 41

               
               
               Conread position:239-411
               
               
               Cow position:chr13:37946602-37946434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:239-422
               
               
               Cow position:chr13:9124712-9124891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):179, 82

               
               
               Conread position:239-423
               
               
               Cow position:chr13:13797033-13796845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):80, 185

               
               
               Conread position:239-431
               
               
               Cow position:chr13:21024767-21024962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):61, 46

               
               
               Conread position:239-459
               
               
               Cow position:chr13:16096360-16096583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):170, 28

               
               
               Conread position:239-459
               
               
               Cow position:chr13:50768375-50768601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):72, 200

               
               
               Conread position:239-460
               
               
               Cow position:chr13:10210868-10210653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):179, 10

               
               
               Conread position:239-464
               
               
               Cow position:chr13:7104443-7104664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):180, 10

               
               
               Conread position:239-468
               
               
               Cow position:chr13:15996820-15997048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):61, 37

               
               
               Conread position:239-473
               
               
               Cow position:chr13:40541325-40541086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):87, 188

               
               
               Conread position:239-474
               
               
               Cow position:chr13:21981186-21980955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 81

               
               
               Conread position:239-474
               
               
               Cow position:chr13:48222765-48222526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):80, 48

               
               
               Conread position:239-477
               
               
               Cow position:chr13:33601445-33601209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):130, 47

               
               
               Conread position:239-489
               
               
               Cow position:chr13:585090-584835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):89, 176

               
               
               Conread position:239-492
               
               
               Cow position:chr13:45439316-45439558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):179, 86

               
               
               Conread position:239-521
               
               
               Cow position:chr13:42672646-42672354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):82, 191

               
               
               Conread position:239-538
               
               
               Cow position:chr13:27180821-27181115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):79, 121

               
               
               Conread position:239-572
               
               
               Cow position:chr13:5911107-5910773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:247
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):244, 37

               
               
               Conread position:239-576
               
               
               Cow position:chr13:14575999-14576334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 84

               
               
               Conread position:239-583
               
               
               Cow position:chr13:14879171-14878818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):99, 124

               
               
               Conread position:239-589
               
               
               Cow position:chr13:21269797-21269440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):188, 105

               
               
               Conread position:239-592
               
               
               Cow position:chr13:28552370-28552739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:264
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):90, 113

               
               
               Conread position:239-597
               
               
               Cow position:chr13:2822651-2823007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:240
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):81, 46

               
               
               Conread position:239-605
               
               
               Cow position:chr13:6848708-6849086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):77, 117

               
               
               Conread position:239-649
               
               
               Cow position:chr13:17498005-17498436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:298
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):177, 34

               
               
               Conread position:239-661
               
               
               Cow position:chr13:13338642-13339072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:282
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):191, 85

               
               
               Conread position:239-662
               
               
               Cow position:chr13:37775422-37775017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:299
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):80, 46

               
               
               Conread position:239-670
               
               
               Cow position:chr13:15162852-15162448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:298
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):74, 175

               
               
               Conread position:239-671
               
               
               Cow position:chr13:25537421-25537859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:310
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):177, 46

               
               
               Conread position:239-673
               
               
               Cow position:chr13:10925139-10924686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 123

               
               
               Conread position:239-674
               
               
               Cow position:chr13:12449197-12448768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 35

               
               
               Conread position:239-674
               
               
               Cow position:chr13:32017732-32017301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 121

               
               
               Conread position:239-674
               
               
               Cow position:chr13:45725656-45726101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:317
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):39, 108

               
               
               Conread position:239-675
               
               
               Cow position:chr13:1155921-1155486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 26

               
               
               Conread position:239-675
               
               
               Cow position:chr13:6616979-6616526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 98

               
               
               Conread position:239-675
               
               
               Cow position:chr13:12876192-12875763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 135

               
               
               Conread position:239-675
               
               
               Cow position:chr13:18166516-18166952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 68

               
               
               Conread position:239-675
               
               
               Cow position:chr13:20880041-20879613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 210

               
               
               Conread position:239-675
               
               
               Cow position:chr13:42113799-42114243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 249

               
               
               Conread position:240-388
               
               
               Cow position:chr13:17815029-17815170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:240-397
               
               
               Cow position:chr13:14782133-14782283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:240-401
               
               
               Cow position:chr13:9108887-9108730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:240-405
               
               
               Cow position:chr13:43342352-43342517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):88, 109

               
               
               Conread position:240-411
               
               
               Cow position:chr13:55143059-55143228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:240-412
               
               
               Cow position:chr13:21426034-21425874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:240-412
               
               
               Cow position:chr13:33854896-33854728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:240-413
               
               
               Cow position:chr13:10711627-10711458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:240-417
               
               
               Cow position:chr13:8367503-8367676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:240-421
               
               
               Cow position:chr13:10986723-10986536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:240-421
               
               
               Cow position:chr13:18215143-18215332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):67, 36

               
               
               Conread position:240-424
               
               
               Cow position:chr13:19177954-19178147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):79, 126

               
               
               Conread position:240-425
               
               
               Cow position:chr13:47643834-47644033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):54, 99

               
               
               Conread position:240-426
               
               
               Cow position:chr13:51249592-51249407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):178, 37

               
               
               Conread position:240-436
               
               
               Cow position:chr13:41979352-41979166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:240-437
               
               
               Cow position:chr13:54627266-54627472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):70, 138

               
               
               Conread position:240-442
               
               
               Cow position:chr13:49283993-49283792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):174, 87

               
               
               Conread position:240-452
               
               
               Cow position:chr13:8450118-8450328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):178, 87

               
               
               Conread position:240-458
               
               
               Cow position:chr13:17813256-17813475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):86, 45

               
               
               Conread position:240-466
               
               
               Cow position:chr13:13283123-13283356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):86, 31

               
               
               Conread position:240-466
               
               
               Cow position:chr13:20519856-20520073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):177, 67

               
               
               Conread position:240-467
               
               
               Cow position:chr13:6183646-6183407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):80, 31

               
               
               Conread position:240-468
               
               
               Cow position:chr13:7046665-7046884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):161, 45

               
               
               Conread position:240-468
               
               
               Cow position:chr13:13775468-13775230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):80, 209

               
               
               Conread position:240-468
               
               
               Cow position:chr13:17611766-17611538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):174, 82

               
               
               Conread position:240-475
               
               
               Cow position:chr13:84376-84600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):172, 36

               
               
               Conread position:240-477
               
               
               Cow position:chr13:40154954-40154706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):65, 13

               
               
               Conread position:240-492
               
               
               Cow position:chr13:7149714-7149474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:191
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):179, 37

               
               
               Conread position:240-502
               
               
               Cow position:chr13:38035624-38035886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:198
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):178, 87

               
               
               Conread position:240-504
               
               
               Cow position:chr13:52459687-52459431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):188, 13

               
               
               Conread position:240-506
               
               
               Cow position:chr13:1147366-1147098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):175, 200

               
               
               Conread position:240-517
               
               
               Cow position:chr13:15239727-15239456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):26, 141

               
               
               Conread position:240-517
               
               
               Cow position:chr13:62007892-62008176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 94

               
               
               Conread position:240-530
               
               
               Cow position:chr13:11231512-11231228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):60, 50

               
               
               Conread position:240-535
               
               
               Cow position:chr13:13196026-13196323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:217
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):174, 46

               
               
               Conread position:240-535
               
               
               Cow position:chr13:49795823-49796098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):84, 126

               
               
               Conread position:240-549
               
               
               Cow position:chr13:45073461-45073162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):158, 33

               
               
               Conread position:240-597
               
               
               Cow position:chr13:58524728-58525082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:256
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):185, 9

               
               
               Conread position:240-604
               
               
               Cow position:chr13:1568719-1569084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):240, 70

               
               
               Conread position:240-605
               
               
               Cow position:chr13:6540516-6540156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:271
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):175, 67

               
               
               Conread position:240-605
               
               
               Cow position:chr13:9899931-9900305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:278
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):60, 48

               
               
               Conread position:240-609
               
               
               Cow position:chr13:17569312-17568940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 38

               
               
               Conread position:240-611
               
               
               Cow position:chr13:60375703-60375328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:259
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):69, 77

               
               
               Conread position:240-615
               
               
               Cow position:chr13:45593708-45594068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:260
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):287, 81

               
               
               Conread position:240-630
               
               
               Cow position:chr13:49023081-49022693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 95

               
               
               Conread position:240-630
               
               
               Cow position:chr13:49503753-49503351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 284

               
               
               Conread position:240-630
               
               
               Cow position:chr13:52055808-52055419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 51

               
               
               Conread position:240-650
               
               
               Cow position:chr13:24715034-24715439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 78

               
               
               Conread position:240-653
               
               
               Cow position:chr13:17159097-17158671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 231

               
               
               Conread position:240-666
               
               
               Cow position:chr13:19022049-19022491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 201

               
               
               Conread position:240-667
               
               
               Cow position:chr13:6973947-6974374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 88

               
               
               Conread position:240-667
               
               
               Cow position:chr13:12670667-12670231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 47

               
               
               Conread position:240-671
               
               
               Cow position:chr13:12282623-12283056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 10

               
               
               Conread position:240-671
               
               
               Cow position:chr13:13260776-13261226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 203

               
               
               Conread position:240-671
               
               
               Cow position:chr13:46515844-46516286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:308
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):88, 33

               
               
               Conread position:240-672
               
               
               Cow position:chr13:17292343-17291911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 80

               
               
               Conread position:240-672
               
               
               Cow position:chr13:20839365-20839786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):196, 45

               
               
               Conread position:240-672
               
               
               Cow position:chr13:56686228-56686646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 28

               
               
               Conread position:240-673
               
               
               Cow position:chr13:311217-311650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 177

               
               
               Conread position:240-673
               
               
               Cow position:chr13:1170244-1170688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:284
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):87, 13

               
               
               Conread position:240-673
               
               
               Cow position:chr13:3315901-3315454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 240

               
               
               Conread position:240-673
               
               
               Cow position:chr13:10845403-10845813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):290, 79

               
               
               Conread position:240-673
               
               
               Cow position:chr13:12989647-12990067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 56

               
               
               Conread position:240-673
               
               
               Cow position:chr13:14927038-14927459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 102

               
               
               Conread position:240-673
               
               
               Cow position:chr13:20881136-20880707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:305
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):117, 79

               
               
               Conread position:240-673
               
               
               Cow position:chr13:23961021-23960586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 10

               
               
               Conread position:240-673
               
               
               Cow position:chr13:25817314-25817733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 79

               
               
               Conread position:240-673
               
               
               Cow position:chr13:26262006-26261574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 10

               
               
               Conread position:240-673
               
               
               Cow position:chr13:35526409-35525997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 34

               
               
               Conread position:240-673
               
               
               Cow position:chr13:44278131-44278574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:295
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):67, 24

               
               
               Conread position:240-673
               
               
               Cow position:chr13:48252183-48251772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:306
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):116, 21

               
               
               Conread position:240-673
               
               
               Cow position:chr13:51528653-51528226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 32

               
               
               Conread position:240-674
               
               
               Cow position:chr13:19883249-19882814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 87

               
               
               Conread position:240-675
               
               
               Cow position:chr13:4552611-4553021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):287, 18

               
               
               Conread position:240-675
               
               
               Cow position:chr13:8194881-8195304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:282
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):103, 123

               
               
               Conread position:240-675
               
               
               Cow position:chr13:14543920-14544344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 34

               
               
               Conread position:240-675
               
               
               Cow position:chr13:15621594-15622029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:304
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):88, 136

               
               
               Conread position:240-675
               
               
               Cow position:chr13:34281466-34281902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 46

               
               
               Conread position:240-676
               
               
               Cow position:chr13:59170429-59170881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:306
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):75, 138

               
               
               Conread position:240-686
               
               
               Cow position:chr13:41806561-41807009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 43

               
               
               Conread position:240-687
               
               
               Cow position:chr13:9975283-9974832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 45

               
               
               Conread position:240-695
               
               
               Cow position:chr13:42200405-42200862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 76

               
               
               Conread position:241-380
               
               
               Cow position:chr13:57322935-57323070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:241-401
               
               
               Cow position:chr13:56432035-56431880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:241-406
               
               
               Cow position:chr13:6951367-6951529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:241-415
               
               
               Cow position:chr13:1339358-1339182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):89, 13

               
               
               Conread position:241-417
               
               
               Cow position:chr13:8637480-8637659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:241-422
               
               
               Cow position:chr13:6113745-6113559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):79, 11

               
               
               Conread position:241-422
               
               
               Cow position:chr13:16163374-16163549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):176, 35

               
               
               Conread position:241-425
               
               
               Cow position:chr13:54681880-54682071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):78, 12

               
               
               Conread position:241-461
               
               
               Cow position:chr13:28536536-28536315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):11, 176

               
               
               Conread position:241-466
               
               
               Cow position:chr13:24215891-24215661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):72, 190

               
               
               Conread position:241-468
               
               
               Cow position:chr13:3209536-3209307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):45, 9

               
               
               Conread position:241-471
               
               
               Cow position:chr13:55765390-55765160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):153, 68

               
               
               Conread position:241-476
               
               
               Cow position:chr13:28440747-28440516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):67, 32

               
               
               Conread position:241-517
               
               
               Cow position:chr13:20314839-20314555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):57, 196

               
               
               Conread position:241-535
               
               
               Cow position:chr13:4158444-4158745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):9, 36

               
               
               Conread position:241-549
               
               
               Cow position:chr13:21127554-21127249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):83, 12

               
               
               Conread position:241-568
               
               
               Cow position:chr13:27550520-27550858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:221
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):6, 123

               
               
               Conread position:241-575
               
               
               Cow position:chr13:15945279-15945604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):135, 46

               
               
               Conread position:241-580
               
               
               Cow position:chr13:58763822-58763501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:243
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):173, 8

               
               
               Conread position:241-595
               
               
               Cow position:chr13:9800306-9800655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):11, 45

               
               
               Conread position:241-634
               
               
               Cow position:chr13:19188100-19188485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 44

               
               
               Conread position:241-658
               
               
               Cow position:chr13:22085946-22085546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 30

               
               
               Conread position:241-671
               
               
               Cow position:chr13:19610779-19610358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 93

               
               
               Conread position:241-673
               
               
               Cow position:chr13:6079617-6079199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 44

               
               
               Conread position:241-673
               
               
               Cow position:chr13:13501825-13501402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 45

               
               
               Conread position:241-673
               
               
               Cow position:chr13:34261021-34261452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 79

               
               
               Conread position:241-673
               
               
               Cow position:chr13:38284184-38283764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 8

               
               
               Conread position:241-674
               
               
               Cow position:chr13:20821051-20820619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 93

               
               
               Conread position:242-384
               
               
               Cow position:chr13:9612862-9612997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:242-410
               
               
               Cow position:chr13:5175386-5175551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:242-411
               
               
               Cow position:chr13:37405502-37405666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:242-412
               
               
               Cow position:chr13:13265351-13265517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:242-414
               
               
               Cow position:chr13:23478687-23478858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):87, 161

               
               
               Conread position:242-422
               
               
               Cow position:chr13:11565627-11565804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):171, 8

               
               
               Conread position:242-422
               
               
               Cow position:chr13:47538363-47538192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):170, 34

               
               
               Conread position:242-447
               
               
               Cow position:chr13:28439203-28439403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):82, 32

               
               
               Conread position:242-453
               
               
               Cow position:chr13:53850607-53850824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):84, 196

               
               
               Conread position:242-464
               
               
               Cow position:chr13:6980712-6980929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):170, 76

               
               
               Conread position:242-468
               
               
               Cow position:chr13:47676150-47675921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):60, 42

               
               
               Conread position:242-468
               
               
               Cow position:chr13:59461033-59461252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):23, 58

               
               
               Conread position:242-473
               
               
               Cow position:chr13:15993170-15993405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):70, 139

               
               
               Conread position:242-506
               
               
               Cow position:chr13:19007730-19007985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):60, 31

               
               
               Conread position:242-526
               
               
               Cow position:chr13:33974533-33974802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):177, 91

               
               
               Conread position:242-594
               
               
               Cow position:chr13:3160189-3160536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):165, 77

               
               
               Conread position:242-671
               
               
               Cow position:chr13:21235881-21235467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 65

               
               
               Conread position:242-671
               
               
               Cow position:chr13:38329405-38329848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 72

               
               
               Conread position:242-672
               
               
               Cow position:chr13:23667044-23667482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 29

               
               
               Conread position:242-673
               
               
               Cow position:chr13:18851875-18852296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 44

               
               
               Conread position:242-673
               
               
               Cow position:chr13:40491004-40491453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 43

               
               
               Conread position:242-673
               
               
               Cow position:chr13:44322679-44323122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 132

               
               
               Conread position:242-674
               
               
               Cow position:chr13:20378530-20378115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:302
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):97, 10

               
               
               Conread position:242-674
               
               
               Cow position:chr13:61977171-61976743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 129

               
               
               Conread position:242-675
               
               
               Cow position:chr13:35659541-35659975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 159

               
               
               Conread position:243-382
               
               
               Cow position:chr13:62304357-62304497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):59, 53

               
               
               Conread position:243-506
               
               
               Cow position:chr13:17089725-17089470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):170, 49

               
               
               Conread position:243-598
               
               
               Cow position:chr13:8374973-8374623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 90

               
               
               Conread position:243-608
               
               
               Cow position:chr13:5671798-5671432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 91

               
               
               Conread position:243-673
               
               
               Cow position:chr13:21242288-21241872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 64

               
               
               Conread position:243-673
               
               
               Cow position:chr13:45023435-45022988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 186

               
               
               Conread position:244-512
               
               
               Cow position:chr13:17823160-17822892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:201
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):103, 9

               
               
               Conread position:244-575
               
               
               Cow position:chr13:11201827-11202158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):68, 177

               
               
               Conread position:244-586
               
               
               Cow position:chr13:20288128-20288466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 5

               
               
               Conread position:244-674
               
               
               Cow position:chr13:20271442-20270994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:313
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):82, 29

               
               
               Conread position:245-392
               
               
               Cow position:chr13:25313359-25313213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):75, 41

               
               
               Conread position:245-410
               
               
               Cow position:chr13:7097376-7097541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):149, 83

               
               
               Conread position:245-461
               
               
               Cow position:chr13:16908003-16908224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):68, 92

               
               
               Conread position:245-484
               
               
               Cow position:chr13:6926302-6926546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):62, 194

               
               
               Conread position:245-521
               
               
               Cow position:chr13:15756906-15757188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):68, 134

               
               
               Conread position:245-557
               
               
               Cow position:chr13:46329813-46329501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):169, 35

               
               
               Conread position:245-628
               
               
               Cow position:chr13:20217608-20217209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:274
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):173, 83

               
               
               Conread position:245-652
               
               
               Cow position:chr13:24230000-24230412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 17

               
               
               Conread position:245-660
               
               
               Cow position:chr13:48597699-48598111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 89

               
               
               Conread position:245-673
               
               
               Cow position:chr13:4665060-4664642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 39

               
               
               Conread position:245-673
               
               
               Cow position:chr13:13320587-13320996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 90

               
               
               Conread position:245-673
               
               
               Cow position:chr13:19393086-19393507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 34

               
               
               Conread position:245-673
               
               
               Cow position:chr13:24585838-24586267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 92

               
               
               Conread position:245-673
               
               
               Cow position:chr13:44201799-44202209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 76

               
               
               Conread position:245-675
               
               
               Cow position:chr13:25926578-25927014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 91

               
               
               Conread position:246-432
               
               
               Cow position:chr13:40483189-40483005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):82, 103

               
               
               Conread position:246-467
               
               
               Cow position:chr13:41157188-41157418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):66, 180

               
               
               Conread position:246-484
               
               
               Cow position:chr13:19598874-19598637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):167, 88

               
               
               Conread position:246-668
               
               
               Cow position:chr13:15257576-15257163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 22

               
               
               Conread position:246-673
               
               
               Cow position:chr13:60966570-60966984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 39

               
               
               Conread position:249-422
               
               
               Cow position:chr13:52177396-52177566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:249-503
               
               
               Cow position:chr13:12673494-12673247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):169, 78

               
               
               Conread position:249-559
               
               
               Cow position:chr13:19278889-19279201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 38

               
               
               Conread position:249-579
               
               
               Cow position:chr13:11260071-11260399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:244
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):218, 76

               
               
               Conread position:249-625
               
               
               Cow position:chr13:20473881-20473515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 73

               
               
               Conread position:249-673
               
               
               Cow position:chr13:972103-971678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 85

               
               
               Conread position:249-673
               
               
               Cow position:chr13:59688069-59687659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 80

               
               
               Conread position:250-439
               
               
               Cow position:chr13:52027341-52027155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):30, 75

               
               
               Conread position:250-512
               
               
               Cow position:chr13:35557316-35557046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:199
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):162, 77

               
               
               Conread position:250-673
               
               
               Cow position:chr13:24753688-24754104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 70

               
               
               Conread position:251-590
               
               
               Cow position:chr13:48375819-48375504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:235
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):219, 69

               
               
               Conread position:251-630
               
               
               Cow position:chr13:17338221-17338611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):86, 112

               
               
               Conread position:251-673
               
               
               Cow position:chr13:15974414-15974830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 85

               
               
               Conread position:252-517
               
               
               Cow position:chr13:11434777-11434516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):74, 21

               
               
               Conread position:253-395
               
               
               Cow position:chr13:11439226-11439088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:253-464
               
               
               Cow position:chr13:4404332-4404541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):176, 49

               
               
               Conread position:253-468
               
               
               Cow position:chr13:18615169-18615398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:253-487
               
               
               Cow position:chr13:57986134-57985904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):165, 67

               
               
               Conread position:253-494
               
               
               Cow position:chr13:18340328-18340573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:183
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):27, 168

               
               
               Conread position:253-509
               
               
               Cow position:chr13:25504333-25504589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):29, 70

               
               
               Conread position:253-530
               
               
               Cow position:chr13:20868948-20868679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):153, 57

               
               
               Conread position:253-558
               
               
               Cow position:chr13:20137615-20137929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:229
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):75, 218

               
               
               Conread position:253-644
               
               
               Cow position:chr13:15991433-15991031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 75

               
               
               Conread position:253-672
               
               
               Cow position:chr13:15868907-15869338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 219

               
               
               Conread position:254-467
               
               
               Cow position:chr13:56958776-56958981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):77, 121

               
               
               Conread position:254-531
               
               
               Cow position:chr13:49475870-49476163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:254-539
               
               
               Cow position:chr13:8667414-8667699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):74, 214

               
               
               Conread position:254-539
               
               
               Cow position:chr13:50751253-50750968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):175, 53

               
               
               Conread position:257-468
               
               
               Cow position:chr13:6465881-6465676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):76, 28

               
               
               Conread position:257-531
               
               
               Cow position:chr13:19779053-19778771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):72, 209

               
               
               Conread position:257-576
               
               
               Cow position:chr13:18994924-18995256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 161

               
               
               Conread position:257-596
               
               
               Cow position:chr13:11808383-11808705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):137, 19

               
               
               Conread position:257-674
               
               
               Cow position:chr13:24155312-24155762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:306
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):71, 298

               
               
               Conread position:258-539
               
               
               Cow position:chr13:16714463-16714176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):71, 90

               
               
               Conread position:258-556
               
               
               Cow position:chr13:20154809-20155107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):147, 13

               
               
               Conread position:258-596
               
               
               Cow position:chr13:54389215-54388874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 15

               
               
               Conread position:258-675
               
               
               Cow position:chr13:44626168-44626602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:291
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):80, 105

               
               
               Conread position:259-672
               
               
               Cow position:chr13:5279402-5278970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 361

               
               
               Conread position:259-675
               
               
               Cow position:chr13:52637101-52637504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:281
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):91, 76

               
               
               Conread position:261-674
               
               
               Cow position:chr13:54382118-54381713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:275
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):46, 102

               
               
               Conread position:261-686
               
               
               Cow position:chr13:34263567-34263139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 49

               
               
               Conread position:262-453
               
               
               Cow position:chr13:37751263-37751068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):45, 145

               
               
               Conread position:263-413
               
               
               Cow position:chr13:1037445-1037596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:263-674
               
               
               Cow position:chr13:17971235-17970813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 132

               
               
               Conread position:264-672
               
               
               Cow position:chr13:17346618-17347026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:281
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):51, 7

               
               
               Conread position:265-518
               
               
               Cow position:chr13:13211698-13211951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):149, 45

               
               
               Conread position:268-673
               
               
               Cow position:chr13:47964360-47963981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 45

               
               
               Conread position:270-673
               
               
               Cow position:chr13:1043144-1042736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 16

               
               
               Conread position:271-671
               
               
               Cow position:chr13:21176503-21176103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 53

               
               
               Conread position:272-421
               
               
               Cow position:chr13:6976026-6975879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):143, 52

               
               
               Conread position:273-417
               
               
               Cow position:chr13:17135400-17135252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:276-663
               
               
               Cow position:chr13:20666565-20666176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):198, 58

               
               
               Conread position:276-677
               
               
               Cow position:chr13:23478849-23479254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 160

               
               
               Conread position:279-453
               
               
               Cow position:chr13:38703055-38702877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):41, 56

               
               
               Conread position:279-535
               
               
               Cow position:chr13:16160244-16160498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):117, 45

               
               
               Conread position:280-673
               
               
               Cow position:chr13:25547761-25547373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:276
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):38, 58

               
               
               Conread position:284-673
               
               
               Cow position:chr13:38873116-38872752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 50

               
               
               Conread position:287-430
               
               
               Cow position:chr13:16790045-16790186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):127, 33

               
               
               Conread position:287-446
               
               
               Cow position:chr13:37980927-37980766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):41, 144

               
               
               Conread position:294-493
               
               
               Cow position:chr13:19750552-19750755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):35, 126

               
               
               Conread position:294-666
               
               
               Cow position:chr13:15110153-15110537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 50

               
               
               Conread position:295-675
               
               
               Cow position:chr13:11060827-11061209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:276
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):81, 38

               
               
               Conread position:298-588
               
               
               Cow position:chr13:51116182-51115889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 137

               
               
               Conread position:298-673
               
               
               Cow position:chr13:13176488-13176869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 141

               
               
               Conread position:299-673
               
               
               Cow position:chr13:37484434-37484050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 14

               
               
               Conread position:300-557
               
               
               Cow position:chr13:19320373-19320643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):25, 36

               
               
               Conread position:301-468
               
               
               Cow position:chr13:37503740-37503572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):30, 9

               
               
               Conread position:301-468
               
               
               Cow position:chr13:51814086-51813922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:301-644
               
               
               Cow position:chr13:21283858-21283515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:242
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):123, 32

               
               
               Conread position:302-511
               
               
               Cow position:chr13:12925622-12925831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):24, 132

               
               
               Conread position:302-553
               
               
               Cow position:chr13:3989051-3989305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):118, 31

               
               
               Conread position:302-692
               
               
               Cow position:chr13:46736067-46736440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):122, 9

               
               
               Conread position:303-535
               
               
               Cow position:chr13:3211398-3211633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):112, 14

               
               
               Conread position:305-468
               
               
               Cow position:chr13:24110328-24110494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):24, 120

               
               
               Conread position:306-671
               
               
               Cow position:chr13:37981891-37981534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 11

               
               
               Conread position:307-672
               
               
               Cow position:chr13:18172186-18172559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 128

               
               
               Conread position:308-492
               
               
               Cow position:chr13:21294928-21295111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):105, 25

               
               
               Conread position:308-596
               
               
               Cow position:chr13:8355059-8355330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):106, 9

               
               
               Conread position:308-630
               
               
               Cow position:chr13:61990467-61990157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:238
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):127, 19

               
               
               Conread position:308-663
               
               
               Cow position:chr13:9265973-9265608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 25

               
               
               Conread position:308-673
               
               
               Cow position:chr13:38561796-38562164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):116, 42

               
               
               Conread position:308-673
               
               
               Cow position:chr13:55316344-55315969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 25

               
               
               Conread position:308-674
               
               
               Cow position:chr13:46181648-46182009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 34

               
               
               Conread position:308-674
               
               
               Cow position:chr13:52284668-52285037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 48

               
               
               Conread position:310-478
               
               
               Cow position:chr13:37621502-37621336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:310-521
               
               
               Cow position:chr13:5005855-5006060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):185, 68

               
               
               Conread position:310-539
               
               
               Cow position:chr13:55727757-55727986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):114, 24

               
               
               Conread position:310-540
               
               
               Cow position:chr13:23525965-23526196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):29, 106

               
               
               Conread position:310-553
               
               
               Cow position:chr13:13297534-13297775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):108, 23

               
               
               Conread position:310-569
               
               
               Cow position:chr13:51901439-51901708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):109, 23

               
               
               Conread position:310-605
               
               
               Cow position:chr13:4420185-4420503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):85, 120

               
               
               Conread position:310-614
               
               
               Cow position:chr13:17837806-17838109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):115, 22

               
               
               Conread position:310-637
               
               
               Cow position:chr13:14771305-14771645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 42

               
               
               Conread position:310-670
               
               
               Cow position:chr13:12547053-12546688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 24

               
               
               Conread position:310-672
               
               
               Cow position:chr13:20706350-20705983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 23

               
               
               Conread position:310-673
               
               
               Cow position:chr13:17439913-17439546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 23

               
               
               Conread position:310-673
               
               
               Cow position:chr13:36771566-36771205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 28

               
               
               Conread position:310-673
               
               
               Cow position:chr13:51822019-51821672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 101

               
               
               Conread position:310-674
               
               
               Cow position:chr13:23167248-23166875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 218

               
               
               Conread position:311-427
               
               
               Cow position:chr13:21188224-21188339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:95
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):106, 23

               
               
               Conread position:311-522
               
               
               Cow position:chr13:17563596-17563805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):107, 22

               
               
               Conread position:311-579
               
               
               Cow position:chr13:47022221-47022485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):107, 7

               
               
               Conread position:311-592
               
               
               Cow position:chr13:11381866-11381579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):80, 10

               
               
               Conread position:311-667
               
               
               Cow position:chr13:2413885-2414240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 69

               
               
               Conread position:311-672
               
               
               Cow position:chr13:56155295-56154942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:248
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):173, 23

               
               
               Conread position:311-673
               
               
               Cow position:chr13:8609691-8609327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 22

               
               
               Conread position:311-673
               
               
               Cow position:chr13:23856067-23856435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 23

               
               
               Conread position:311-674
               
               
               Cow position:chr13:56148377-56148761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 22

               
               
               Conread position:311-674
               
               
               Cow position:chr13:56160590-56160206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 22

               
               
               Conread position:311-687
               
               
               Cow position:chr13:185384-185742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):15, 105

               
               
               Conread position:312-675
               
               
               Cow position:chr13:20562850-20563219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 25

               
               
               Conread position:314-528
               
               
               Cow position:chr13:827105-827316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):104, 18

               
               
               Conread position:314-578
               
               
               Cow position:chr13:11591609-11591875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):58, 81

               
               
               Conread position:314-652
               
               
               Cow position:chr13:26369383-26369725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):109, 19

               
               
               Conread position:314-672
               
               
               Cow position:chr13:52586179-52585801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 117

               
               
               Conread position:314-673
               
               
               Cow position:chr13:18835061-18835406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:261
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):24, 93

               
               
               Conread position:314-674
               
               
               Cow position:chr13:53566458-53566818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 98

               
               
               Conread position:315-449
               
               
               Cow position:chr13:15460918-15460781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):11, 125

               
               
               Conread position:315-579
               
               
               Cow position:chr13:6389256-6389510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):179, 22

               
               
               Conread position:315-634
               
               
               Cow position:chr13:11643799-11644114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):103, 18

               
               
               Conread position:315-667
               
               
               Cow position:chr13:13765650-13765982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:249
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):102, 18

               
               
               Conread position:315-673
               
               
               Cow position:chr13:43185020-43184653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 12

               
               
               Conread position:316-609
               
               
               Cow position:chr13:39367820-39368113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:224
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):92, 17

               
               
               Conread position:319-672
               
               
               Cow position:chr13:10929124-10928771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 8

               
               
               Conread position:319-672
               
               
               Cow position:chr13:11460494-11460844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 121

               
               
               Conread position:319-673
               
               
               Cow position:chr13:43762033-43762385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 14

               
               
               Conread position:321-553
               
               
               Cow position:chr13:8401921-8402160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):92, 56

               
               
               Conread position:322-675
               
               
               Cow position:chr13:40722840-40722488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:255
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):97, 11

               
               
               Conread position:323-673
               
               
               Cow position:chr13:20684263-20683902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 119

               
               
               Conread position:324-665
               
               
               Cow position:chr13:31813742-31814079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 113

               
               
               Conread position:325-594
               
               
               Cow position:chr13:49520953-49520677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):98, 91

               
               
               Conread position:327-675
               
               
               Cow position:chr13:25435252-25434906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 111

               
               
               Conread position:328-514
               
               
               Cow position:chr13:25428351-25428167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):87, 96

               
               
               Conread position:328-667
               
               
               Cow position:chr13:23270333-23269999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 85

               
               
               Conread position:328-674
               
               
               Cow position:chr13:60430206-60429857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:255
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):13, 23

               
               
               Conread position:329-478
               
               
               Cow position:chr13:8232875-8233023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):139, 84

               
               
               Conread position:329-592
               
               
               Cow position:chr13:8555338-8555606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):91, 27

               
               
               Conread position:330-594
               
               
               Cow position:chr13:17966335-17966064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 14

               
               
               Conread position:331-651
               
               
               Cow position:chr13:62247012-62247329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:215
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):87, 44

               
               
               Conread position:334-668
               
               
               Cow position:chr13:15529159-15528816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 107

               
               
               Conread position:334-673
               
               
               Cow position:chr13:890295-889959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:250
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):11, 106

               
               
               Conread position:336-670
               
               
               Cow position:chr13:15166698-15167039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 66

               
               
               Conread position:337-512
               
               
               Cow position:chr13:18181894-18181714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):81, 98

               
               
               Conread position:337-559
               
               
               Cow position:chr13:56677896-56678125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):87, 58

               
               
               Conread position:337-577
               
               
               Cow position:chr13:15144484-15144244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):81, 19

               
               
               Conread position:337-617
               
               
               Cow position:chr13:15902905-15903181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):81, 94

               
               
               Conread position:337-650
               
               
               Cow position:chr13:8652561-8652240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):81, 103

               
               
               Conread position:337-674
               
               
               Cow position:chr13:6061127-6060786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 98

               
               
               Conread position:337-676
               
               
               Cow position:chr13:9593387-9593729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 20

               
               
               Conread position:337-677
               
               
               Cow position:chr13:12202243-12202589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 98

               
               
               Conread position:338-601
               
               
               Cow position:chr13:37640471-37640738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):79, 108

               
               
               Conread position:338-674
               
               
               Cow position:chr13:57494307-57493962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 92

               
               
               Conread position:340-506
               
               
               Cow position:chr13:31529761-31529927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):78, 91

               
               
               Conread position:340-672
               
               
               Cow position:chr13:6153900-6153560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 95

               
               
               Conread position:340-673
               
               
               Cow position:chr13:17622173-17622504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 10

               
               
               Conread position:340-674
               
               
               Cow position:chr13:15885138-15884792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 95

               
               
               Conread position:341-521
               
               
               Cow position:chr13:29123189-29123373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):70, 116

               
               
               Conread position:343-603
               
               
               Cow position:chr13:62600895-62601159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):80, 6

               
               
               Conread position:344-570
               
               
               Cow position:chr13:34555940-34555711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):68, 86

               
               
               Conread position:344-605
               
               
               Cow position:chr13:48862207-48861940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):61, 71

               
               
               Conread position:346-492
               
               
               Cow position:chr13:60393674-60393822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):69, 85

               
               
               Conread position:347-585
               
               
               Cow position:chr13:62518439-62518196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):71, 154

               
               
               Conread position:348-469
               
               
               Cow position:chr13:15739585-15739704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:95
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:348-671
               
               
               Cow position:chr13:8201591-8201269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 162

               
               
               Conread position:349-674
               
               
               Cow position:chr13:20650094-20649762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 70

               
               
               Conread position:354-673
               
               
               Cow position:chr13:8524720-8524402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 84

               
               
               Conread position:354-673
               
               
               Cow position:chr13:52879300-52879632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 95

               
               
               Conread position:354-687
               
               
               Cow position:chr13:25531892-25531554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 82

               
               
               Conread position:355-538
               
               
               Cow position:chr13:16187997-16187812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):59, 84

               
               
               Conread position:355-541
               
               
               Cow position:chr13:8369065-8369244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):109, 27

               
               
               Conread position:355-673
               
               
               Cow position:chr13:18243761-18244076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:238
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):69, 64

               
               
               Conread position:359-667
               
               
               Cow position:chr13:52228197-52227886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):70, 109

               
               
               Conread position:360-592
               
               
               Cow position:chr13:52929615-52929852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):65, 59

               
               
               Conread position:360-672
               
               
               Cow position:chr13:15233830-15234131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):58, 75

               
               
               Conread position:363-673
               
               
               Cow position:chr13:46324882-46324570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):66, 161

               
               
               Conread position:367-598
               
               
               Cow position:chr13:13238488-13238726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):63, 12

               
               
               Conread position:367-675
               
               
               Cow position:chr13:61047125-61047428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):62, 100

               
               
               Conread position:370-673
               
               
               Cow position:chr13:61166536-61166238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 34

               
               
               Conread position:373-673
               
               
               Cow position:chr13:28689384-28689690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):46, 72

               
               
               Conread position:373-675
               
               
               Cow position:chr13:40651851-40652155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 52

               
               
               Conread position:375-675
               
               
               Cow position:chr13:13306015-13306328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):55, 21

               
               
               Conread position:375-675
               
               
               Cow position:chr13:31808440-31808734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):62, 55

               
               
               Conread position:376-672
               
               
               Cow position:chr13:34375179-34375478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):54, 155

               
               
               Conread position:384-672
               
               
               Cow position:chr13:53536380-53536086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):40, 35

               
               
               Conread position:386-597
               
               
               Cow position:chr13:20128596-20128813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):38, 33

               
               
               Conread position:390-674
               
               
               Cow position:chr13:16024522-16024810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 49

               
               
               Conread position:396-589
               
               
               Cow position:chr13:6455315-6455508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):22, 43

               
               
               Conread position:399-674
               
               
               Cow position:chr13:41253564-41253836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):20, 43

               
               
               Conread position:401-673
               
               
               Cow position:chr13:19178221-19178496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):83, 14

               
               
               Conread position:401-674
               
               
               Cow position:chr13:55295675-55295404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):60, 34

               
               
               Conread position:402-597
               
               
               Cow position:chr13:53070215-53070022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):125, 13

               
               
               Conread position:404-634
               
               
               Cow position:chr13:62474847-62474618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 11

               
               
               Conread position:405-674
               
               
               Cow position:chr13:5658777-5658509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):19, 14

               
               
               Conread position:407-605
               
               
               Cow position:chr13:36345927-36346127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):6, 18

               
               
               Conread position:407-673
               
               
               Cow position:chr13:30026064-30026332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:204
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):60, 8

               
               
               Conread position:415-639
               
               
               Cow position:chr13:7789966-7790199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):15, 116

               
               
               Conread position:417-671
               
               
               Cow position:chr13:5752464-5752205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):67, 18

               
               
               Conread position:417-673
               
               
               Cow position:chr13:12682582-12682321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:193
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):58, 18

               
               
               Conread position:418-673
               
               
               Cow position:chr13:17815743-17815991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):121, 12

               
               
               Conread position:420-673
               
               
               Cow position:chr13:5091702-5091441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:198
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):54, 15

               
               
               Conread position:421-604
               
               
               Cow position:chr13:41155066-41154877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):63, 14

               
               
               Conread position:421-673
               
               
               Cow position:chr13:54237320-54237566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):66, 101

               
               
               Conread position:421-674
               
               
               Cow position:chr13:13265774-13266023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):59, 14

               
               
               Conread position:424-697
               
               
               Cow position:chr13:47312888-47313150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):56, 11

               
               
               Conread position:425-673
               
               
               Cow position:chr13:25261840-25261588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 10

               
               
               Conread position:434-672
               
               
               Cow position:chr13:52199066-52199308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):54, 90

               
               
               Conread position:434-673
               
               
               Cow position:chr13:563163-562918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 86

               
               
               Conread position:434-673
               
               
               Cow position:chr13:25249178-25248924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):48, 66

               
               
               Conread position:434-673
               
               
               Cow position:chr13:54093725-54093960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):34, 49

               
               
               Conread position:434-674
               
               
               Cow position:chr13:34052609-34052380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):119, 71

               
               
               Conread position:436-673
               
               
               Cow position:chr13:9884749-9884988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:183
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):46, 33

               
               
               Conread position:436-673
               
               
               Cow position:chr13:20041988-20041741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):28, 35

               
               
               Conread position:436-674
               
               
               Cow position:chr13:3701420-3701654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):33, 25

               
               
               Conread position:439-672
               
               
               Cow position:chr13:37946221-37945997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):27, 16

               
               
               Conread position:446-673
               
               
               Cow position:chr13:15172422-15172187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):28, 85

               
               
               Conread position:446-673
               
               
               Cow position:chr13:37517145-37516916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):39, 82

               
               
               Conread position:447-674
               
               
               Cow position:chr13:2339429-2339651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):106, 36

               
               
               Conread position:450-673
               
               
               Cow position:chr13:21904659-21904882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):34, 18

               
               
               Conread position:454-673
               
               
               Cow position:chr13:24776284-24776511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):86, 30

               
               
               Conread position:480-673
               
               
               Cow position:chr13:60690700-60690502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):47, 39

               
               
               Conread position:159-422
               
               
               Cow position:chr14:37436969-37436686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):33, 24

               
               
               Conread position:177-517
               
               
               Cow position:chr14:10693486-10693138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:241
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):14, 9

               
               
               Conread position:210-505
               
               
               Cow position:chr14:21224457-21224749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):199, 22

               
               
               Conread position:224-476
               
               
               Cow position:chr14:606829-606587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):22, 87

               
               
               Conread position:230-535
               
               
               Cow position:chr14:42419448-42419136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):77, 43

               
               
               Conread position:230-675
               
               
               Cow position:chr14:11810729-11810290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:303
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):109, 123

               
               
               Conread position:233-410
               
               
               Cow position:chr14:40952097-40952282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):36, 19

               
               
               Conread position:233-413
               
               
               Cow position:chr14:29282587-29282769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):67, 20

               
               
               Conread position:233-542
               
               
               Cow position:chr14:2038951-2038669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):181, 16

               
               
               Conread position:234-386
               
               
               Cow position:chr14:19355127-19355274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:234-392
               
               
               Cow position:chr14:12071692-12071531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:234-410
               
               
               Cow position:chr14:24845812-24845978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):14, 51

               
               
               Conread position:234-412
               
               
               Cow position:chr14:20483870-20483685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:234-417
               
               
               Cow position:chr14:35651943-35651767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:234-426
               
               
               Cow position:chr14:20915145-20914950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):79, 15

               
               
               Conread position:234-428
               
               
               Cow position:chr14:23465217-23465019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):66, 49

               
               
               Conread position:234-452
               
               
               Cow position:chr14:46977768-46977552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):14, 58

               
               
               Conread position:234-462
               
               
               Cow position:chr14:18301790-18302026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):9, 100

               
               
               Conread position:234-467
               
               
               Cow position:chr14:42440088-42439842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):11, 204

               
               
               Conread position:234-468
               
               
               Cow position:chr14:21535469-21535235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):14, 87

               
               
               Conread position:234-481
               
               
               Cow position:chr14:11643410-11643173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:234-491
               
               
               Cow position:chr14:6360228-6360498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):92, 127

               
               
               Conread position:234-505
               
               
               Cow position:chr14:25225566-25225840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):9, 41

               
               
               Conread position:234-528
               
               
               Cow position:chr14:26655301-26655001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):86, 19

               
               
               Conread position:234-567
               
               
               Cow position:chr14:33341585-33341933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):20, 132

               
               
               Conread position:234-634
               
               
               Cow position:chr14:1803284-1802873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 52

               
               
               Conread position:234-655
               
               
               Cow position:chr14:50362628-50363065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 15

               
               
               Conread position:234-667
               
               
               Cow position:chr14:30760050-30760480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:296
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):8, 125

               
               
               Conread position:234-670
               
               
               Cow position:chr14:18941452-18941029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 19

               
               
               Conread position:234-673
               
               
               Cow position:chr14:39434419-39433983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 87

               
               
               Conread position:234-674
               
               
               Cow position:chr14:33774189-33773773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 51

               
               
               Conread position:234-675
               
               
               Cow position:chr14:38168540-38168963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 15

               
               
               Conread position:234-687
               
               
               Cow position:chr14:16237677-16237211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 53

               
               
               Conread position:234-696
               
               
               Cow position:chr14:10078089-10078563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 211

               
               
               Conread position:235-397
               
               
               Cow position:chr14:11604719-11604880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):9, 40

               
               
               Conread position:235-420
               
               
               Cow position:chr14:19832556-19832372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):80, 17

               
               
               Conread position:235-422
               
               
               Cow position:chr14:4481510-4481695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):178, 87

               
               
               Conread position:235-452
               
               
               Cow position:chr14:1431982-1431777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):172, 14

               
               
               Conread position:235-461
               
               
               Cow position:chr14:11576904-11577132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:176
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):8, 139

               
               
               Conread position:235-518
               
               
               Cow position:chr14:36443181-36442895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):182, 92

               
               
               Conread position:235-550
               
               
               Cow position:chr14:11056898-11056587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:230
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):13, 24

               
               
               Conread position:235-557
               
               
               Cow position:chr14:35503200-35503528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:241
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):76, 19

               
               
               Conread position:235-630
               
               
               Cow position:chr14:14949379-14948975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:269
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):19, 127

               
               
               Conread position:235-668
               
               
               Cow position:chr14:20667170-20666748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 85

               
               
               Conread position:235-671
               
               
               Cow position:chr14:20010477-20010035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:301
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):84, 18

               
               
               Conread position:235-673
               
               
               Cow position:chr14:26442511-26442060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 188

               
               
               Conread position:236-408
               
               
               Cow position:chr14:47224536-47224356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:236-467
               
               
               Cow position:chr14:7198333-7198568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):82, 13

               
               
               Conread position:236-467
               
               
               Cow position:chr14:12142078-12141835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):76, 13

               
               
               Conread position:236-468
               
               
               Cow position:chr14:8949488-8949708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):77, 102

               
               
               Conread position:236-512
               
               
               Cow position:chr14:12081288-12081022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):80, 17

               
               
               Conread position:236-574
               
               
               Cow position:chr14:12512053-12511717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):244, 13

               
               
               Conread position:236-596
               
               
               Cow position:chr14:19618905-19618548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 13

               
               
               Conread position:236-673
               
               
               Cow position:chr14:10609517-10609967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 16

               
               
               Conread position:236-673
               
               
               Cow position:chr14:14327288-14326826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:309
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):83, 61

               
               
               Conread position:236-675
               
               
               Cow position:chr14:17755412-17755839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 51

               
               
               Conread position:236-680
               
               
               Cow position:chr14:39918900-39918478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 51

               
               
               Conread position:237-422
               
               
               Cow position:chr14:5668283-5668094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:237-467
               
               
               Cow position:chr14:23419632-23419868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):76, 17

               
               
               Conread position:237-500
               
               
               Cow position:chr14:41838020-41837768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):181, 10

               
               
               Conread position:237-539
               
               
               Cow position:chr14:5025117-5025425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):89, 15

               
               
               Conread position:237-539
               
               
               Cow position:chr14:20954521-20954829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):109, 13

               
               
               Conread position:237-568
               
               
               Cow position:chr14:16524308-16524643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):148, 10

               
               
               Conread position:237-586
               
               
               Cow position:chr14:19321671-19321312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:234
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):88, 15

               
               
               Conread position:237-587
               
               
               Cow position:chr14:15492429-15492791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 36

               
               
               Conread position:237-670
               
               
               Cow position:chr14:15913716-15913276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:309
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):11, 30

               
               
               Conread position:237-673
               
               
               Cow position:chr14:3194711-3195128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:237-673
               
               
               Cow position:chr14:41472139-41471692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 209

               
               
               Conread position:238-412
               
               
               Cow position:chr14:32784279-32784102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:238-413
               
               
               Cow position:chr14:36559387-36559212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):91, 42

               
               
               Conread position:238-414
               
               
               Cow position:chr14:8591005-8590833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:238-422
               
               
               Cow position:chr14:11079295-11079476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):177, 14

               
               
               Conread position:238-422
               
               
               Cow position:chr14:48829897-48829715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):57, 48

               
               
               Conread position:238-429
               
               
               Cow position:chr14:8027727-8027531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):86, 15

               
               
               Conread position:238-450
               
               
               Cow position:chr14:27364417-27364631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):62, 14

               
               
               Conread position:238-513
               
               
               Cow position:chr14:29964856-29965134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:201
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):57, 66

               
               
               Conread position:238-518
               
               
               Cow position:chr14:41267883-41267629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):224, 11

               
               
               Conread position:238-539
               
               
               Cow position:chr14:40754405-40754101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 86

               
               
               Conread position:238-638
               
               
               Cow position:chr14:47252393-47251979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:268
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):88, 14

               
               
               Conread position:238-652
               
               
               Cow position:chr14:28115353-28114926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 124

               
               
               Conread position:238-659
               
               
               Cow position:chr14:13845833-13846250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 28

               
               
               Conread position:238-660
               
               
               Cow position:chr14:48447325-48446895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:286
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):80, 11

               
               
               Conread position:238-666
               
               
               Cow position:chr14:28304947-28304515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 14

               
               
               Conread position:238-667
               
               
               Cow position:chr14:2937481-2937919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:278
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):69, 14

               
               
               Conread position:238-670
               
               
               Cow position:chr14:13006364-13006782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:300
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):190, 15

               
               
               Conread position:238-672
               
               
               Cow position:chr14:28987529-28987969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 14

               
               
               Conread position:238-673
               
               
               Cow position:chr14:17554652-17554207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:277
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):169, 14

               
               
               Conread position:238-673
               
               
               Cow position:chr14:38529819-38530243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:293
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):62, 14

               
               
               Conread position:238-691
               
               
               Cow position:chr14:22988874-22989331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 95

               
               
               Conread position:239-417
               
               
               Cow position:chr14:30023360-30023179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:239-422
               
               
               Cow position:chr14:18270200-18270385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):85, 96

               
               
               Conread position:239-427
               
               
               Cow position:chr14:8083036-8083226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:239-441
               
               
               Cow position:chr14:37152094-37151898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):194, 10

               
               
               Conread position:239-446
               
               
               Cow position:chr14:15211774-15211975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):180, 80

               
               
               Conread position:239-468
               
               
               Cow position:chr14:49940853-49941079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):176, 80

               
               
               Conread position:239-472
               
               
               Cow position:chr14:28924005-28924243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):86, 199

               
               
               Conread position:239-498
               
               
               Cow position:chr14:44713256-44713518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):80, 217

               
               
               Conread position:239-501
               
               
               Cow position:chr14:23104155-23103891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):174, 13

               
               
               Conread position:239-509
               
               
               Cow position:chr14:6864838-6865117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):89, 118

               
               
               Conread position:239-509
               
               
               Cow position:chr14:39452050-39452321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):99, 124

               
               
               Conread position:239-513
               
               
               Cow position:chr14:28465378-28465101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):79, 188

               
               
               Conread position:239-535
               
               
               Cow position:chr14:40208748-40209041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:226
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):133, 56

               
               
               Conread position:239-539
               
               
               Cow position:chr14:26222575-26222887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):8, 40

               
               
               Conread position:239-539
               
               
               Cow position:chr14:28153905-28153603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:202
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):88, 122

               
               
               Conread position:239-589
               
               
               Cow position:chr14:4877388-4877034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 79

               
               
               Conread position:239-592
               
               
               Cow position:chr14:36289950-36289600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:256
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):153, 14

               
               
               Conread position:239-604
               
               
               Cow position:chr14:47276861-47276490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):63, 125

               
               
               Conread position:239-605
               
               
               Cow position:chr14:8946243-8945871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:242
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):180, 120

               
               
               Conread position:239-605
               
               
               Cow position:chr14:27338178-27338557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):93, 225

               
               
               Conread position:239-615
               
               
               Cow position:chr14:25986352-25986740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:263
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):52, 119

               
               
               Conread position:239-635
               
               
               Cow position:chr14:26859897-26859481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:262
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:239-672
               
               
               Cow position:chr14:4227383-4226918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:326
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):79, 46

               
               
               Conread position:239-672
               
               
               Cow position:chr14:18345884-18345455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 64

               
               
               Conread position:239-672
               
               
               Cow position:chr14:38144270-38143836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 248

               
               
               Conread position:239-673
               
               
               Cow position:chr14:21357397-21357830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 169

               
               
               Conread position:239-673
               
               
               Cow position:chr14:35420922-35420479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 46

               
               
               Conread position:239-673
               
               
               Cow position:chr14:42330186-42330632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 108

               
               
               Conread position:239-674
               
               
               Cow position:chr14:13385206-13385652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 120

               
               
               Conread position:239-674
               
               
               Cow position:chr14:21284493-21284909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):245, 47

               
               
               Conread position:239-675
               
               
               Cow position:chr14:7290639-7291075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:285
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):94, 188

               
               
               Conread position:239-675
               
               
               Cow position:chr14:11043654-11043209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 121

               
               
               Conread position:239-675
               
               
               Cow position:chr14:20016870-20016427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 289

               
               
               Conread position:239-675
               
               
               Cow position:chr14:24921938-24922386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 114

               
               
               Conread position:239-675
               
               
               Cow position:chr14:31130537-31130109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 120

               
               
               Conread position:239-675
               
               
               Cow position:chr14:48492959-48492505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:307
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):79, 98

               
               
               Conread position:239-691
               
               
               Cow position:chr14:13809794-13810234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):242, 45

               
               
               Conread position:240-379
               
               
               Cow position:chr14:2852991-2853130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:240-405
               
               
               Cow position:chr14:24746298-24746473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):76, 9

               
               
               Conread position:240-411
               
               
               Cow position:chr14:20010667-20010493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:240-422
               
               
               Cow position:chr14:50519337-50519155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):7, 30

               
               
               Conread position:240-426
               
               
               Cow position:chr14:8707397-8707579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):174, 79

               
               
               Conread position:240-427
               
               
               Cow position:chr14:13516150-13515964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):60, 12

               
               
               Conread position:240-434
               
               
               Cow position:chr14:11831957-11831750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):67, 9

               
               
               Conread position:240-434
               
               
               Cow position:chr14:39041202-39041402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):67, 15

               
               
               Conread position:240-436
               
               
               Cow position:chr14:27653002-27653203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:240-446
               
               
               Cow position:chr14:37933972-37934163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):193, 46

               
               
               Conread position:240-448
               
               
               Cow position:chr14:20245328-20245118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):7, 111

               
               
               Conread position:240-463
               
               
               Cow position:chr14:5959152-5958921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):76, 201

               
               
               Conread position:240-467
               
               
               Cow position:chr14:19827631-19827410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):178, 35

               
               
               Conread position:240-473
               
               
               Cow position:chr14:10851868-10852106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):67, 197

               
               
               Conread position:240-473
               
               
               Cow position:chr14:49501167-49500947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):27, 96

               
               
               Conread position:240-476
               
               
               Cow position:chr14:29734518-29734285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):195, 9

               
               
               Conread position:240-479
               
               
               Cow position:chr14:27733449-27733688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):174, 88

               
               
               Conread position:240-492
               
               
               Cow position:chr14:49487805-49488057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):178, 45

               
               
               Conread position:240-505
               
               
               Cow position:chr14:48744356-48744622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):175, 184

               
               
               Conread position:240-513
               
               
               Cow position:chr14:29723735-29723478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):227, 69

               
               
               Conread position:240-517
               
               
               Cow position:chr14:24945653-24945370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):73, 33

               
               
               Conread position:240-521
               
               
               Cow position:chr14:4282669-4282383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:214
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):48, 38

               
               
               Conread position:240-528
               
               
               Cow position:chr14:37422932-37422657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):178, 45

               
               
               Conread position:240-535
               
               
               Cow position:chr14:12954534-12954245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:223
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):175, 42

               
               
               Conread position:240-539
               
               
               Cow position:chr14:22941899-22941579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 207

               
               
               Conread position:240-550
               
               
               Cow position:chr14:41253138-41252836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):129, 44

               
               
               Conread position:240-556
               
               
               Cow position:chr14:7636658-7636339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:220
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):99, 55

               
               
               Conread position:240-563
               
               
               Cow position:chr14:23424106-23424423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 65

               
               
               Conread position:240-563
               
               
               Cow position:chr14:23442867-23443184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 65

               
               
               Conread position:240-568
               
               
               Cow position:chr14:41303003-41302660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:244
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):11, 213

               
               
               Conread position:240-574
               
               
               Cow position:chr14:33457203-33456858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):86, 14

               
               
               Conread position:240-574
               
               
               Cow position:chr14:44084635-44084297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:255
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):180, 45

               
               
               Conread position:240-580
               
               
               Cow position:chr14:21933503-21933153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 13

               
               
               Conread position:240-583
               
               
               Cow position:chr14:48838432-48838786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 199

               
               
               Conread position:240-589
               
               
               Cow position:chr14:24607794-24608163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:257
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):10, 188

               
               
               Conread position:240-594
               
               
               Cow position:chr14:20826332-20826677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 123

               
               
               Conread position:240-602
               
               
               Cow position:chr14:36254848-36254496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:255
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):174, 78

               
               
               Conread position:240-605
               
               
               Cow position:chr14:10721861-10721516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:263
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):48, 44

               
               
               Conread position:240-630
               
               
               Cow position:chr14:13042600-13042996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 70

               
               
               Conread position:240-633
               
               
               Cow position:chr14:16352199-16352560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:269
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):227, 79

               
               
               Conread position:240-667
               
               
               Cow position:chr14:43046017-43046415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:295
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):229, 29

               
               
               Conread position:240-668
               
               
               Cow position:chr14:5835771-5836173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):240, 36

               
               
               Conread position:240-669
               
               
               Cow position:chr14:8786696-8786275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 45

               
               
               Conread position:240-671
               
               
               Cow position:chr14:19852095-19851645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:304
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):118, 86

               
               
               Conread position:240-673
               
               
               Cow position:chr14:8101638-8102056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:306
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):89, 45

               
               
               Conread position:240-673
               
               
               Cow position:chr14:9019882-9020303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 45

               
               
               Conread position:240-673
               
               
               Cow position:chr14:20640787-20640346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 9

               
               
               Conread position:240-673
               
               
               Cow position:chr14:33791034-33791467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):288, 94

               
               
               Conread position:240-673
               
               
               Cow position:chr14:34200018-34199564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 207

               
               
               Conread position:240-673
               
               
               Cow position:chr14:42155126-42154683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 80

               
               
               Conread position:240-673
               
               
               Cow position:chr14:45677072-45677501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 46

               
               
               Conread position:240-675
               
               
               Cow position:chr14:5222445-5222007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 113

               
               
               Conread position:240-675
               
               
               Cow position:chr14:6600110-6599674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 9

               
               
               Conread position:240-675
               
               
               Cow position:chr14:40230794-40230357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 36

               
               
               Conread position:240-697
               
               
               Cow position:chr14:14622327-14621885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 70

               
               
               Conread position:241-385
               
               
               Cow position:chr14:21968665-21968523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:241-421
               
               
               Cow position:chr14:47200292-47200102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:241-422
               
               
               Cow position:chr14:40347801-40347622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):6, 72

               
               
               Conread position:241-447
               
               
               Cow position:chr14:7127702-7127908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):174, 78

               
               
               Conread position:241-452
               
               
               Cow position:chr14:15470144-15469927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):68, 166

               
               
               Conread position:241-478
               
               
               Cow position:chr14:13731255-13731016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:183
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):135, 78

               
               
               Conread position:241-500
               
               
               Cow position:chr14:27999198-27998937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):9, 58

               
               
               Conread position:241-532
               
               
               Cow position:chr14:33229558-33229260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):85, 110

               
               
               Conread position:241-605
               
               
               Cow position:chr14:2975243-2974882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:260
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):87, 12

               
               
               Conread position:241-671
               
               
               Cow position:chr14:24236665-24237097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 8

               
               
               Conread position:241-673
               
               
               Cow position:chr14:11508396-11507965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 122

               
               
               Conread position:241-673
               
               
               Cow position:chr14:33247578-33247160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 66

               
               
               Conread position:241-673
               
               
               Cow position:chr14:36166782-36167211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 132

               
               
               Conread position:241-673
               
               
               Cow position:chr14:41749914-41749485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 78

               
               
               Conread position:241-673
               
               
               Cow position:chr14:50589549-50589112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 34

               
               
               Conread position:241-674
               
               
               Cow position:chr14:6541885-6541442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 193

               
               
               Conread position:241-675
               
               
               Cow position:chr14:35381430-35381868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 126

               
               
               Conread position:241-675
               
               
               Cow position:chr14:45052281-45052719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:297
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):47, 12

               
               
               Conread position:241-684
               
               
               Cow position:chr14:23682109-23682553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 92

               
               
               Conread position:242-405
               
               
               Cow position:chr14:21530240-21530067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:242-408
               
               
               Cow position:chr14:25912497-25912660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:242-411
               
               
               Cow position:chr14:36151167-36151337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:242-412
               
               
               Cow position:chr14:33618152-33618316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:242-430
               
               
               Cow position:chr14:21557182-21556992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):67, 88

               
               
               Conread position:242-435
               
               
               Cow position:chr14:41156877-41156689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):175, 32

               
               
               Conread position:242-466
               
               
               Cow position:chr14:45955131-45955350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):24, 11

               
               
               Conread position:242-467
               
               
               Cow position:chr14:20466778-20467000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:174
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):6, 159

               
               
               Conread position:242-468
               
               
               Cow position:chr14:11729264-11729039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):172, 81

               
               
               Conread position:242-468
               
               
               Cow position:chr14:12033402-12033170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):65, 130

               
               
               Conread position:242-468
               
               
               Cow position:chr14:15428321-15428549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):86, 43

               
               
               Conread position:242-475
               
               
               Cow position:chr14:10937513-10937758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):65, 112

               
               
               Conread position:242-477
               
               
               Cow position:chr14:4848193-4848427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):65, 32

               
               
               Conread position:242-527
               
               
               Cow position:chr14:11285413-11285705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):41, 183

               
               
               Conread position:242-576
               
               
               Cow position:chr14:49817843-49817509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:224
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):68, 94

               
               
               Conread position:242-604
               
               
               Cow position:chr14:15997909-15997555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 69

               
               
               Conread position:242-605
               
               
               Cow position:chr14:5235036-5234669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):182, 52

               
               
               Conread position:242-621
               
               
               Cow position:chr14:25979113-25979493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:249
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):65, 111

               
               
               Conread position:242-634
               
               
               Cow position:chr14:20110879-20110481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 86

               
               
               Conread position:242-663
               
               
               Cow position:chr14:49824770-49824360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):242, 31

               
               
               Conread position:242-667
               
               
               Cow position:chr14:26115901-26116335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:288
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):16, 113

               
               
               Conread position:242-670
               
               
               Cow position:chr14:12244539-12244107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 82

               
               
               Conread position:242-671
               
               
               Cow position:chr14:20712840-20712406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 66

               
               
               Conread position:242-673
               
               
               Cow position:chr14:1715571-1716012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:291
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):96, 112

               
               
               Conread position:242-673
               
               
               Cow position:chr14:8541364-8540938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 68

               
               
               Conread position:242-673
               
               
               Cow position:chr14:10858283-10858709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 68

               
               
               Conread position:243-509
               
               
               Cow position:chr14:8923743-8923471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):83, 36

               
               
               Conread position:243-673
               
               
               Cow position:chr14:42596238-42596655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:303
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):34, 97

               
               
               Conread position:244-553
               
               
               Cow position:chr14:15504312-15503999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):87, 42

               
               
               Conread position:244-583
               
               
               Cow position:chr14:16550149-16549813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 29

               
               
               Conread position:245-422
               
               
               Cow position:chr14:18112745-18112571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):95, 64

               
               
               Conread position:245-431
               
               
               Cow position:chr14:24785505-24785693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):174, 83

               
               
               Conread position:245-473
               
               
               Cow position:chr14:25903378-25903607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:173
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):172, 88

               
               
               Conread position:245-491
               
               
               Cow position:chr14:13928428-13928666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):173, 72

               
               
               Conread position:245-603
               
               
               Cow position:chr14:41966071-41966451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 245

               
               
               Conread position:245-646
               
               
               Cow position:chr14:39037085-39037480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:302
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):165, 40

               
               
               Conread position:245-667
               
               
               Cow position:chr14:47673033-47672611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 84

               
               
               Conread position:245-673
               
               
               Cow position:chr14:5630014-5630439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 39

               
               
               Conread position:245-673
               
               
               Cow position:chr14:33714828-33714410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 123

               
               
               Conread position:245-674
               
               
               Cow position:chr14:18309454-18309031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 68

               
               
               Conread position:246-427
               
               
               Cow position:chr14:20070909-20071099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):53, 30

               
               
               Conread position:246-482
               
               
               Cow position:chr14:12884111-12884352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):187, 0

               
               
               Conread position:246-528
               
               
               Cow position:chr14:11470303-11470018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:210
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):80, 113

               
               
               Conread position:246-598
               
               
               Cow position:chr14:12342995-12342613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:253
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):66, 119

               
               
               Conread position:246-675
               
               
               Cow position:chr14:24981300-24981735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 175

               
               
               Conread position:249-452
               
               
               Cow position:chr14:9307916-9308120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):79, 24

               
               
               Conread position:249-513
               
               
               Cow position:chr14:48900020-48900289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):30, 127

               
               
               Conread position:249-516
               
               
               Cow position:chr14:25227997-25228261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):213, 48

               
               
               Conread position:249-579
               
               
               Cow position:chr14:23080904-23080578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:242
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):42, 89

               
               
               Conread position:249-629
               
               
               Cow position:chr14:25001882-25002270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 185

               
               
               Conread position:249-673
               
               
               Cow position:chr14:8848128-8848526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 42

               
               
               Conread position:250-468
               
               
               Cow position:chr14:10706729-10706945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):168, 77

               
               
               Conread position:250-535
               
               
               Cow position:chr14:1708808-1708518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):78, 193

               
               
               Conread position:250-605
               
               
               Cow position:chr14:14182202-14182556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):41, 71

               
               
               Conread position:251-624
               
               
               Cow position:chr14:28803867-28803512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:255
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):290, 59

               
               
               Conread position:251-652
               
               
               Cow position:chr14:24387302-24387708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 23

               
               
               Conread position:252-518
               
               
               Cow position:chr14:1796050-1796312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:198
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):81, 36

               
               
               Conread position:252-673
               
               
               Cow position:chr14:48426925-48427354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 181

               
               
               Conread position:252-679
               
               
               Cow position:chr14:48689381-48689813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 51

               
               
               Conread position:253-409
               
               
               Cow position:chr14:15228398-15228550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:253-411
               
               
               Cow position:chr14:19772420-19772264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:253-465
               
               
               Cow position:chr14:26918847-26919065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):73, 168

               
               
               Conread position:253-469
               
               
               Cow position:chr14:36425550-36425339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:253-579
               
               
               Cow position:chr14:40329295-40329631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:228
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):82, 104

               
               
               Conread position:253-666
               
               
               Cow position:chr14:48496293-48495875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 135

               
               
               Conread position:253-673
               
               
               Cow position:chr14:28378211-28378642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 36

               
               
               Conread position:254-411
               
               
               Cow position:chr14:20035573-20035734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):53, 88

               
               
               Conread position:254-412
               
               
               Cow position:chr14:11280258-11280100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:254-539
               
               
               Cow position:chr14:46997907-46998188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):170, 53

               
               
               Conread position:254-630
               
               
               Cow position:chr14:16760254-16760634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:259
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):124, 186

               
               
               Conread position:254-633
               
               
               Cow position:chr14:12520449-12520071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:258
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):59, 83

               
               
               Conread position:254-667
               
               
               Cow position:chr14:26433394-26432969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 191

               
               
               Conread position:257-514
               
               
               Cow position:chr14:25381298-25381539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):213, 28

               
               
               Conread position:257-652
               
               
               Cow position:chr14:26941363-26940966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:250
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):83, 113

               
               
               Conread position:257-652
               
               
               Cow position:chr14:40165287-40165678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 14

               
               
               Conread position:258-492
               
               
               Cow position:chr14:37901859-37902095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):157, 49

               
               
               Conread position:258-492
               
               
               Cow position:chr14:41191239-41190988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:258-500
               
               
               Cow position:chr14:39095323-39095077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):39, 159

               
               
               Conread position:258-559
               
               
               Cow position:chr14:48772776-48773071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:217
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):166, 15

               
               
               Conread position:258-596
               
               
               Cow position:chr14:26628667-26628318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):68, 96

               
               
               Conread position:259-408
               
               
               Cow position:chr14:21593142-21592994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:259-427
               
               
               Cow position:chr14:46431927-46432097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):67, 101

               
               
               Conread position:259-673
               
               
               Cow position:chr14:18904728-18904330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 27

               
               
               Conread position:260-477
               
               
               Cow position:chr14:40191455-40191665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):158, 73

               
               
               Conread position:262-672
               
               
               Cow position:chr14:41809792-41809375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 100

               
               
               Conread position:267-606
               
               
               Cow position:chr14:1859742-1859401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):26, 9

               
               
               Conread position:271-629
               
               
               Cow position:chr14:1978203-1977845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 31

               
               
               Conread position:272-671
               
               
               Cow position:chr14:41127779-41128169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 75

               
               
               Conread position:273-480
               
               
               Cow position:chr14:12924180-12924385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):141, 11

               
               
               Conread position:275-675
               
               
               Cow position:chr14:41479786-41479379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:280
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):49, 5

               
               
               Conread position:279-580
               
               
               Cow position:chr14:4203217-4202905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:225
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):136, 54

               
               
               Conread position:287-530
               
               
               Cow position:chr14:25824582-25824827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):23, 71

               
               
               Conread position:295-674
               
               
               Cow position:chr14:19863537-19863161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 38

               
               
               Conread position:296-544
               
               
               Cow position:chr14:33300600-33300853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):38, 112

               
               
               Conread position:297-667
               
               
               Cow position:chr14:29632984-29632611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:260
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):9, 75

               
               
               Conread position:297-686
               
               
               Cow position:chr14:21538538-21538190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:280
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):167, 115

               
               
               Conread position:301-652
               
               
               Cow position:chr14:34983770-34984121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 32

               
               
               Conread position:302-674
               
               
               Cow position:chr14:25385985-25385612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 96

               
               
               Conread position:303-673
               
               
               Cow position:chr14:33751443-33751789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:260
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):111, 18

               
               
               Conread position:304-669
               
               
               Cow position:chr14:15055087-15054712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 32

               
               
               Conread position:304-671
               
               
               Cow position:chr14:39778657-39779029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 131

               
               
               Conread position:306-674
               
               
               Cow position:chr14:18657701-18657320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):25, 114

               
               
               Conread position:308-468
               
               
               Cow position:chr14:11975822-11975665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:308-676
               
               
               Cow position:chr14:19129414-19129793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 27

               
               
               Conread position:308-676
               
               
               Cow position:chr14:44848460-44848103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:255
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):108, 91

               
               
               Conread position:310-476
               
               
               Cow position:chr14:16457432-16457596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):108, 23

               
               
               Conread position:310-489
               
               
               Cow position:chr14:45577180-45577000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):104, 24

               
               
               Conread position:310-535
               
               
               Cow position:chr14:19951478-19951708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):70, 23

               
               
               Conread position:310-539
               
               
               Cow position:chr14:42436937-42437168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:176
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):105, 23

               
               
               Conread position:310-586
               
               
               Cow position:chr14:10631206-10630931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):102, 34

               
               
               Conread position:310-604
               
               
               Cow position:chr14:26490832-26490531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:216
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):70, 17

               
               
               Conread position:310-605
               
               
               Cow position:chr14:33830212-33830510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 101

               
               
               Conread position:310-647
               
               
               Cow position:chr14:16032924-16033259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:245
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):139, 24

               
               
               Conread position:310-650
               
               
               Cow position:chr14:38338221-38337889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:247
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):108, 34

               
               
               Conread position:310-673
               
               
               Cow position:chr14:9901096-9901448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 27

               
               
               Conread position:310-673
               
               
               Cow position:chr14:34096653-34096317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):73, 24

               
               
               Conread position:310-674
               
               
               Cow position:chr14:26097783-26097408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 110

               
               
               Conread position:310-674
               
               
               Cow position:chr14:49021987-49021624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 82

               
               
               Conread position:310-675
               
               
               Cow position:chr14:37884004-37883638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 23

               
               
               Conread position:311-540
               
               
               Cow position:chr14:34331413-34331184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):104, 22

               
               
               Conread position:311-674
               
               
               Cow position:chr14:45605011-45605369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 16

               
               
               Conread position:313-471
               
               
               Cow position:chr14:42339087-42339239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:313-591
               
               
               Cow position:chr14:40283533-40283819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:197
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):127, 23

               
               
               Conread position:313-650
               
               
               Cow position:chr14:6175512-6175838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:250
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):171, 20

               
               
               Conread position:313-667
               
               
               Cow position:chr14:4990917-4991263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 24

               
               
               Conread position:313-673
               
               
               Cow position:chr14:20600300-20600659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 20

               
               
               Conread position:314-571
               
               
               Cow position:chr14:12035327-12035587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):104, 32

               
               
               Conread position:314-662
               
               
               Cow position:chr14:19372253-19372610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 25

               
               
               Conread position:314-673
               
               
               Cow position:chr14:19188959-19189317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 19

               
               
               Conread position:315-575
               
               
               Cow position:chr14:46654624-46654362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):104, 18

               
               
               Conread position:315-602
               
               
               Cow position:chr14:19394278-19394570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):15, 69

               
               
               Conread position:317-492
               
               
               Cow position:chr14:3943631-3943457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):98, 16

               
               
               Conread position:317-675
               
               
               Cow position:chr14:14316806-14317147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 17

               
               
               Conread position:318-673
               
               
               Cow position:chr14:17841372-17841009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 46

               
               
               Conread position:320-673
               
               
               Cow position:chr14:14187253-14187611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 13

               
               
               Conread position:320-673
               
               
               Cow position:chr14:21964057-21964398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:261
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):9, 95

               
               
               Conread position:321-549
               
               
               Cow position:chr14:15039692-15039456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:322-606
               
               
               Cow position:chr14:16256683-16256980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 11

               
               
               Conread position:322-670
               
               
               Cow position:chr14:11615295-11614947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:247
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):95, 20

               
               
               Conread position:323-472
               
               
               Cow position:chr14:34449046-34448896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):106, 10

               
               
               Conread position:323-478
               
               
               Cow position:chr14:34399873-34399716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):106, 10

               
               
               Conread position:323-552
               
               
               Cow position:chr14:45718338-45718111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):83, 11

               
               
               Conread position:324-673
               
               
               Cow position:chr14:17809863-17810210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:254
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):88, 56

               
               
               Conread position:327-479
               
               
               Cow position:chr14:5557193-5557039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):91, 104

               
               
               Conread position:327-594
               
               
               Cow position:chr14:13426778-13427032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):78, 89

               
               
               Conread position:328-673
               
               
               Cow position:chr14:16834251-16834608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 107

               
               
               Conread position:329-657
               
               
               Cow position:chr14:33309573-33309248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 90

               
               
               Conread position:329-673
               
               
               Cow position:chr14:37155808-37156146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):77, 27

               
               
               Conread position:330-671
               
               
               Cow position:chr14:49086238-49086581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:239
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):100, 85

               
               
               Conread position:330-672
               
               
               Cow position:chr14:35018822-35018479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 101

               
               
               Conread position:331-673
               
               
               Cow position:chr14:48412950-48412599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 88

               
               
               Conread position:333-650
               
               
               Cow position:chr14:27592022-27591700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:239
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):81, 53

               
               
               Conread position:337-468
               
               
               Cow position:chr14:33643898-33644028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):78, 87

               
               
               Conread position:337-472
               
               
               Cow position:chr14:25954258-25954125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:337-658
               
               
               Cow position:chr14:40432864-40433184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 40

               
               
               Conread position:337-672
               
               
               Cow position:chr14:20385047-20384707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 102

               
               
               Conread position:337-673
               
               
               Cow position:chr14:34355772-34355424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:264
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):68, 127

               
               
               Conread position:337-673
               
               
               Cow position:chr14:39775112-39774777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:246
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):76, 50

               
               
               Conread position:339-539
               
               
               Cow position:chr14:29698421-29698215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):49, 100

               
               
               Conread position:340-598
               
               
               Cow position:chr14:5572883-5573148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):9, 125

               
               
               Conread position:344-611
               
               
               Cow position:chr14:41180769-41180482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):54, 25

               
               
               Conread position:344-673
               
               
               Cow position:chr14:12856545-12856874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:238
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):76, 45

               
               
               Conread position:344-673
               
               
               Cow position:chr14:34125238-34124899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):71, 12

               
               
               Conread position:346-539
               
               
               Cow position:chr14:5633998-5633795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):49, 94

               
               
               Conread position:353-637
               
               
               Cow position:chr14:33338521-33338239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 83

               
               
               Conread position:353-673
               
               
               Cow position:chr14:24796480-24796145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 83

               
               
               Conread position:353-674
               
               
               Cow position:chr14:22966710-22967031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 11

               
               
               Conread position:360-672
               
               
               Cow position:chr14:3564245-3564548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:224
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):59, 82

               
               
               Conread position:363-504
               
               
               Cow position:chr14:2345031-2345177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):55, 76

               
               
               Conread position:364-653
               
               
               Cow position:chr14:3162692-3162971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):53, 74

               
               
               Conread position:364-675
               
               
               Cow position:chr14:106602-106295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:227
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):66, 93

               
               
               Conread position:367-630
               
               
               Cow position:chr14:26191136-26190861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):62, 158

               
               
               Conread position:367-671
               
               
               Cow position:chr14:32574130-32574425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):64, 160

               
               
               Conread position:377-673
               
               
               Cow position:chr14:25231672-25231371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):42, 62

               
               
               Conread position:377-674
               
               
               Cow position:chr14:47591935-47591640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):93, 8

               
               
               Conread position:389-673
               
               
               Cow position:chr14:33538946-33538648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):30, 146

               
               
               Conread position:399-637
               
               
               Cow position:chr14:33643776-33643549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):68, 16

               
               
               Conread position:400-673
               
               
               Cow position:chr14:33828163-33828427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):19, 25

               
               
               Conread position:400-674
               
               
               Cow position:chr14:41756269-41756538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):127, 18

               
               
               Conread position:403-673
               
               
               Cow position:chr14:15032759-15033033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):27, 22

               
               
               Conread position:408-673
               
               
               Cow position:chr14:11820108-11819846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:201
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):122, 27

               
               
               Conread position:409-640
               
               
               Cow position:chr14:44234170-44233938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):10, 66

               
               
               Conread position:410-675
               
               
               Cow position:chr14:38296271-38295996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):20, 47

               
               
               Conread position:415-608
               
               
               Cow position:chr14:14580886-14581082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):20, 52

               
               
               Conread position:415-657
               
               
               Cow position:chr14:36439939-36440170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):9, 21

               
               
               Conread position:416-575
               
               
               Cow position:chr14:19513392-19513236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):68, 11

               
               
               Conread position:417-622
               
               
               Cow position:chr14:35819592-35819384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):62, 22

               
               
               Conread position:417-673
               
               
               Cow position:chr14:7482077-7482333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):72, 18

               
               
               Conread position:417-689
               
               
               Cow position:chr14:8964569-8964837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 14

               
               
               Conread position:425-672
               
               
               Cow position:chr14:19221907-19222158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):44, 10

               
               
               Conread position:425-674
               
               
               Cow position:chr14:24580957-24581203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 10

               
               
               Conread position:427-672
               
               
               Cow position:chr14:6419275-6419035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):9, 59

               
               
               Conread position:432-673
               
               
               Cow position:chr14:27312458-27312702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:194
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):52, 91

               
               
               Conread position:435-674
               
               
               Cow position:chr14:24785983-24786212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):92, 46

               
               
               Conread position:436-673
               
               
               Cow position:chr14:8754358-8754604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):27, 94

               
               
               Conread position:436-673
               
               
               Cow position:chr14:22381514-22381277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:183
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):42, 85

               
               
               Conread position:436-673
               
               
               Cow position:chr14:24991861-24992090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):48, 34

               
               
               Conread position:436-674
               
               
               Cow position:chr14:11748871-11748642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):49, 70

               
               
               Conread position:436-686
               
               
               Cow position:chr14:39422554-39422296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):45, 33

               
               
               Conread position:440-673
               
               
               Cow position:chr14:15518333-15518099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):101, 36

               
               
               Conread position:440-674
               
               
               Cow position:chr14:12250153-12249917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):27, 42

               
               
               Conread position:445-671
               
               
               Cow position:chr14:10912918-10912697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):36, 87

               
               
               Conread position:472-675
               
               
               Cow position:chr14:17013579-17013788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):14, 48

               
               
               Conread position:483-667
               
               
               Cow position:chr14:12484213-12484032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):44, 37

               
               
               Conread position:485-675
               
               
               Cow position:chr14:46735393-46735592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):42, 34

               
               
               Conread position:160-588
               
               
               Cow position:chr15:4179131-4178695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:299
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):35, 23

               
               
               Conread position:203-602
               
               
               Cow position:chr15:20290208-20289814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:275
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):44, 108

               
               
               Conread position:219-413
               
               
               Cow position:chr15:44089298-44089102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):112, 138

               
               
               Conread position:227-675
               
               
               Cow position:chr15:15041553-15041108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:312
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):67, 131

               
               
               Conread position:229-517
               
               
               Cow position:chr15:41056332-41056037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):88, 44

               
               
               Conread position:233-385
               
               
               Cow position:chr15:47920266-47920117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:233-574
               
               
               Cow position:chr15:1857608-1857956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:243
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):182, 20

               
               
               Conread position:234-371
               
               
               Cow position:chr15:13513414-13513551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):9, 82

               
               
               Conread position:234-430
               
               
               Cow position:chr15:41475946-41475749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):9, 84

               
               
               Conread position:234-433
               
               
               Cow position:chr15:15992760-15992563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):9, 39

               
               
               Conread position:234-442
               
               
               Cow position:chr15:17371421-17371629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):9, 178

               
               
               Conread position:234-456
               
               
               Cow position:chr15:19002402-19002170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:234-468
               
               
               Cow position:chr15:7751032-7750793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):94, 70

               
               
               Conread position:234-477
               
               
               Cow position:chr15:47773599-47773364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):14, 77

               
               
               Conread position:234-528
               
               
               Cow position:chr15:50552651-50552351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):92, 13

               
               
               Conread position:234-542
               
               
               Cow position:chr15:20314365-20314676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):92, 19

               
               
               Conread position:234-542
               
               
               Cow position:chr15:40379093-40379404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):15, 138

               
               
               Conread position:234-572
               
               
               Cow position:chr15:10231860-10231515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):181, 15

               
               
               Conread position:234-598
               
               
               Cow position:chr15:16261211-16261566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:261
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):10, 92

               
               
               Conread position:234-625
               
               
               Cow position:chr15:32324323-32323929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 12

               
               
               Conread position:234-626
               
               
               Cow position:chr15:38837627-38838027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 19

               
               
               Conread position:234-663
               
               
               Cow position:chr15:20391394-20390964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 15

               
               
               Conread position:234-665
               
               
               Cow position:chr15:20081656-20082076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 66

               
               
               Conread position:234-667
               
               
               Cow position:chr15:10088202-10088632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 15

               
               
               Conread position:234-672
               
               
               Cow position:chr15:10246112-10245684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 14

               
               
               Conread position:234-673
               
               
               Cow position:chr15:30047671-30047212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 18

               
               
               Conread position:234-673
               
               
               Cow position:chr15:30981836-30982240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 22

               
               
               Conread position:234-675
               
               
               Cow position:chr15:31857472-31857918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 20

               
               
               Conread position:234-675
               
               
               Cow position:chr15:43827890-43827446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 151

               
               
               Conread position:234-675
               
               
               Cow position:chr15:48851610-48851171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:300
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):61, 18

               
               
               Conread position:235-408
               
               
               Cow position:chr15:27975992-27975815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):8, 22

               
               
               Conread position:235-411
               
               
               Cow position:chr15:17621437-17621259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):93, 18

               
               
               Conread position:235-457
               
               
               Cow position:chr15:39474052-39473828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):89, 103

               
               
               Conread position:235-475
               
               
               Cow position:chr15:9978987-9979225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:171
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):91, 18

               
               
               Conread position:235-479
               
               
               Cow position:chr15:26851340-26851098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):183, 15

               
               
               Conread position:235-565
               
               
               Cow position:chr15:30471097-30470750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 208

               
               
               Conread position:235-619
               
               
               Cow position:chr15:16657352-16657762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:293
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):9, 51

               
               
               Conread position:235-673
               
               
               Cow position:chr15:17233069-17233518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 207

               
               
               Conread position:235-699
               
               
               Cow position:chr15:22938884-22938426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 189

               
               
               Conread position:236-472
               
               
               Cow position:chr15:13432367-13432607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):82, 13

               
               
               Conread position:236-501
               
               
               Cow position:chr15:14281419-14281703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):54, 213

               
               
               Conread position:236-579
               
               
               Cow position:chr15:43674062-43673714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:257
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):9, 18

               
               
               Conread position:236-611
               
               
               Cow position:chr15:23572804-23572413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 16

               
               
               Conread position:236-659
               
               
               Cow position:chr15:47844203-47843797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 17

               
               
               Conread position:236-672
               
               
               Cow position:chr15:16928206-16927759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 23

               
               
               Conread position:236-672
               
               
               Cow position:chr15:17100820-17100391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 61

               
               
               Conread position:236-673
               
               
               Cow position:chr15:22532136-22532565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 98

               
               
               Conread position:236-687
               
               
               Cow position:chr15:22939440-22938995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 101

               
               
               Conread position:237-385
               
               
               Cow position:chr15:14969404-14969546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):42, 12

               
               
               Conread position:237-387
               
               
               Cow position:chr15:20906144-20905997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:237-423
               
               
               Cow position:chr15:38420669-38420481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):94, 12

               
               
               Conread position:237-456
               
               
               Cow position:chr15:44671455-44671229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):75, 36

               
               
               Conread position:237-477
               
               
               Cow position:chr15:42380814-42381055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):90, 15

               
               
               Conread position:237-504
               
               
               Cow position:chr15:49491537-49491794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):191, 32

               
               
               Conread position:237-522
               
               
               Cow position:chr15:36793606-36793314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):95, 16

               
               
               Conread position:237-614
               
               
               Cow position:chr15:275529-275912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 13

               
               
               Conread position:237-673
               
               
               Cow position:chr15:14870640-14871070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):230, 60

               
               
               Conread position:237-673
               
               
               Cow position:chr15:19771022-19771448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):245, 96

               
               
               Conread position:237-673
               
               
               Cow position:chr15:29026998-29026554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:297
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):89, 117

               
               
               Conread position:237-673
               
               
               Cow position:chr15:36435088-36435534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 15

               
               
               Conread position:237-675
               
               
               Cow position:chr15:6905424-6905868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 48

               
               
               Conread position:238-382
               
               
               Cow position:chr15:1500716-1500858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:238-382
               
               
               Cow position:chr15:1508242-1508384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:238-382
               
               
               Cow position:chr15:2378329-2378471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:238-408
               
               
               Cow position:chr15:848534-848699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:238-417
               
               
               Cow position:chr15:17124584-17124403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):88, 14

               
               
               Conread position:238-417
               
               
               Cow position:chr15:40562797-40562617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:238-422
               
               
               Cow position:chr15:12357494-12357688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):47, 11

               
               
               Conread position:238-426
               
               
               Cow position:chr15:21710222-21710033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):88, 11

               
               
               Conread position:238-431
               
               
               Cow position:chr15:44119582-44119389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):88, 11

               
               
               Conread position:238-444
               
               
               Cow position:chr15:3591288-3591484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):105, 43

               
               
               Conread position:238-468
               
               
               Cow position:chr15:38652716-38652483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):80, 14

               
               
               Conread position:238-468
               
               
               Cow position:chr15:49131944-49132176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):9, 97

               
               
               Conread position:238-471
               
               
               Cow position:chr15:31495331-31495103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):177, 11

               
               
               Conread position:238-504
               
               
               Cow position:chr15:15177204-15177469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):85, 15

               
               
               Conread position:238-513
               
               
               Cow position:chr15:42888948-42888674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):88, 15

               
               
               Conread position:238-535
               
               
               Cow position:chr15:33693486-33693177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):53, 60

               
               
               Conread position:238-572
               
               
               Cow position:chr15:2380251-2380583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):237, 99

               
               
               Conread position:238-576
               
               
               Cow position:chr15:662577-662241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:246
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):74, 11

               
               
               Conread position:238-586
               
               
               Cow position:chr15:286358-286719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 273

               
               
               Conread position:238-594
               
               
               Cow position:chr15:24616454-24616822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:255
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):62, 15

               
               
               Conread position:238-663
               
               
               Cow position:chr15:4919184-4918738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 104

               
               
               Conread position:238-672
               
               
               Cow position:chr15:47990879-47990439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:285
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):75, 14

               
               
               Conread position:238-673
               
               
               Cow position:chr15:1301033-1301464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:284
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):186, 14

               
               
               Conread position:238-673
               
               
               Cow position:chr15:17084092-17084536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 94

               
               
               Conread position:238-673
               
               
               Cow position:chr15:20534566-20534125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 15

               
               
               Conread position:238-673
               
               
               Cow position:chr15:25667338-25666899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:296
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):69, 11

               
               
               Conread position:238-673
               
               
               Cow position:chr15:35839210-35838766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:296
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):85, 11

               
               
               Conread position:238-673
               
               
               Cow position:chr15:50957923-50957471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:301
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):54, 9

               
               
               Conread position:238-674
               
               
               Cow position:chr15:6227289-6226873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:301
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):180, 11

               
               
               Conread position:238-675
               
               
               Cow position:chr15:45478885-45479333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 122

               
               
               Conread position:238-676
               
               
               Cow position:chr15:21832558-21832097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:319
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):32, 51

               
               
               Conread position:238-723
               
               
               Cow position:chr15:19402891-19403350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 91

               
               
               Conread position:239-432
               
               
               Cow position:chr15:41049569-41049382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:239-433
               
               
               Cow position:chr15:51211184-51211371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):176, 46

               
               
               Conread position:239-460
               
               
               Cow position:chr15:22444100-22443878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):87, 177

               
               
               Conread position:239-461
               
               
               Cow position:chr15:11909060-11908840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):86, 142

               
               
               Conread position:239-467
               
               
               Cow position:chr15:53028249-53028480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):95, 120

               
               
               Conread position:239-479
               
               
               Cow position:chr15:36388186-36388418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):70, 28

               
               
               Conread position:239-480
               
               
               Cow position:chr15:20856592-20856346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:239-513
               
               
               Cow position:chr15:4076218-4076488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):189, 68

               
               
               Conread position:239-539
               
               
               Cow position:chr15:6233128-6232826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):153, 95

               
               
               Conread position:239-574
               
               
               Cow position:chr15:5409007-5408678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):242, 81

               
               
               Conread position:239-584
               
               
               Cow position:chr15:5717606-5717949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:247
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):180, 68

               
               
               Conread position:239-590
               
               
               Cow position:chr15:16017920-16018279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:233
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):98, 124

               
               
               Conread position:239-637
               
               
               Cow position:chr15:44658253-44658648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 85

               
               
               Conread position:239-659
               
               
               Cow position:chr15:27900618-27900194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 68

               
               
               Conread position:239-663
               
               
               Cow position:chr15:50341005-50341429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:303
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):35, 46

               
               
               Conread position:239-670
               
               
               Cow position:chr15:28924875-28924445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 102

               
               
               Conread position:239-671
               
               
               Cow position:chr15:795130-794691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 78

               
               
               Conread position:239-671
               
               
               Cow position:chr15:36391558-36391994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 204

               
               
               Conread position:239-671
               
               
               Cow position:chr15:44051594-44051174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):230, 94

               
               
               Conread position:239-672
               
               
               Cow position:chr15:4138023-4138460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 9

               
               
               Conread position:239-672
               
               
               Cow position:chr15:36621288-36621741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 13

               
               
               Conread position:239-673
               
               
               Cow position:chr15:3700397-3699958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 46

               
               
               Conread position:239-673
               
               
               Cow position:chr15:29810013-29810433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 10

               
               
               Conread position:239-674
               
               
               Cow position:chr15:6969872-6970311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 36

               
               
               Conread position:239-674
               
               
               Cow position:chr15:21941961-21941521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 46

               
               
               Conread position:239-674
               
               
               Cow position:chr15:39405629-39406060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 100

               
               
               Conread position:239-675
               
               
               Cow position:chr15:20472657-20472220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 94

               
               
               Conread position:239-675
               
               
               Cow position:chr15:32980147-32979708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 44

               
               
               Conread position:239-675
               
               
               Cow position:chr15:33284763-33285208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:297
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):101, 61

               
               
               Conread position:239-675
               
               
               Cow position:chr15:43031139-43030695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:292
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):87, 160

               
               
               Conread position:239-675
               
               
               Cow position:chr15:43914211-43913758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 124

               
               
               Conread position:239-675
               
               
               Cow position:chr15:51427939-51427497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:304
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):85, 46

               
               
               Conread position:239-677
               
               
               Cow position:chr15:225916-225474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 74

               
               
               Conread position:240-368
               
               
               Cow position:chr15:16492342-16492471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:240-398
               
               
               Cow position:chr15:11630212-11630056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:240-401
               
               
               Cow position:chr15:10199222-10199378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:240-405
               
               
               Cow position:chr15:40844733-40844567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):86, 63

               
               
               Conread position:240-409
               
               
               Cow position:chr15:840259-840091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:240-410
               
               
               Cow position:chr15:26849644-26849479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:240-412
               
               
               Cow position:chr15:46059244-46059422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:240-415
               
               
               Cow position:chr15:33897710-33897887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):32, 99

               
               
               Conread position:240-422
               
               
               Cow position:chr15:41321064-41320882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):158, 83

               
               
               Conread position:240-422
               
               
               Cow position:chr15:52791828-52792008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):86, 121

               
               
               Conread position:240-426
               
               
               Cow position:chr15:4500586-4500777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):67, 99

               
               
               Conread position:240-427
               
               
               Cow position:chr15:42190327-42190520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):44, 101

               
               
               Conread position:240-429
               
               
               Cow position:chr15:28099000-28099192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):89, 33

               
               
               Conread position:240-430
               
               
               Cow position:chr15:43715218-43715408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):165, 77

               
               
               Conread position:240-456
               
               
               Cow position:chr15:7479111-7478890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):7, 19

               
               
               Conread position:240-460
               
               
               Cow position:chr15:26529784-26530000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):179, 18

               
               
               Conread position:240-461
               
               
               Cow position:chr15:4248036-4248259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):176, 184

               
               
               Conread position:240-465
               
               
               Cow position:chr15:2931683-2931451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):74, 156

               
               
               Conread position:240-465
               
               
               Cow position:chr15:6037558-6037340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):178, 45

               
               
               Conread position:240-473
               
               
               Cow position:chr15:50332863-50333105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):79, 162

               
               
               Conread position:240-476
               
               
               Cow position:chr15:40835003-40835239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):171, 82

               
               
               Conread position:240-486
               
               
               Cow position:chr15:15154188-15154435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):86, 9

               
               
               Conread position:240-505
               
               
               Cow position:chr15:3695525-3695790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):174, 69

               
               
               Conread position:240-505
               
               
               Cow position:chr15:38827427-38827169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:204
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):175, 70

               
               
               Conread position:240-506
               
               
               Cow position:chr15:4694639-4694902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):174, 21

               
               
               Conread position:240-509
               
               
               Cow position:chr15:25571923-25571648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):55, 15

               
               
               Conread position:240-520
               
               
               Cow position:chr15:41528078-41527806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:240-528
               
               
               Cow position:chr15:25349862-25350143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):169, 70

               
               
               Conread position:240-528
               
               
               Cow position:chr15:43114831-43114543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:213
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):12, 80

               
               
               Conread position:240-535
               
               
               Cow position:chr15:35425904-35425628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):221, 70

               
               
               Conread position:240-539
               
               
               Cow position:chr15:28047873-28047565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:216
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):77, 36

               
               
               Conread position:240-540
               
               
               Cow position:chr15:19950374-19950664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):240, 49

               
               
               Conread position:240-557
               
               
               Cow position:chr15:29686451-29686760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):180, 13

               
               
               Conread position:240-559
               
               
               Cow position:chr15:33178538-33178211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):35, 78

               
               
               Conread position:240-572
               
               
               Cow position:chr15:49273850-49274178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 69

               
               
               Conread position:240-574
               
               
               Cow position:chr15:36353554-36353897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 96

               
               
               Conread position:240-589
               
               
               Cow position:chr15:1502801-1503147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:243
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):240, 94

               
               
               Conread position:240-597
               
               
               Cow position:chr15:9648801-9648455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:261
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):124, 67

               
               
               Conread position:240-601
               
               
               Cow position:chr15:4295648-4296020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 18

               
               
               Conread position:240-631
               
               
               Cow position:chr15:36259708-36259320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 9

               
               
               Conread position:240-634
               
               
               Cow position:chr15:49230425-49230056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:266
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):357, 79

               
               
               Conread position:240-640
               
               
               Cow position:chr15:2141433-2141004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:301
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):55, 8

               
               
               Conread position:240-640
               
               
               Cow position:chr15:21822039-21821629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 97

               
               
               Conread position:240-650
               
               
               Cow position:chr15:26919381-26918972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 46

               
               
               Conread position:240-650
               
               
               Cow position:chr15:50350731-50351118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:290
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):81, 153

               
               
               Conread position:240-667
               
               
               Cow position:chr15:11996140-11995707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 106

               
               
               Conread position:240-669
               
               
               Cow position:chr15:1083482-1083055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 33

               
               
               Conread position:240-670
               
               
               Cow position:chr15:20370563-20370142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 12

               
               
               Conread position:240-671
               
               
               Cow position:chr15:21893667-21894104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 94

               
               
               Conread position:240-671
               
               
               Cow position:chr15:27247411-27247835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:301
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):10, 69

               
               
               Conread position:240-671
               
               
               Cow position:chr15:46563589-46563162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 80

               
               
               Conread position:240-672
               
               
               Cow position:chr15:16112282-16112728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 201

               
               
               Conread position:240-672
               
               
               Cow position:chr15:27973318-27972892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 45

               
               
               Conread position:240-672
               
               
               Cow position:chr15:49922023-49922463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 93

               
               
               Conread position:240-673
               
               
               Cow position:chr15:7429854-7430305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 254

               
               
               Conread position:240-673
               
               
               Cow position:chr15:14020385-14020795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 45

               
               
               Conread position:240-673
               
               
               Cow position:chr15:14505334-14505750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 9

               
               
               Conread position:240-673
               
               
               Cow position:chr15:17870404-17869971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 208

               
               
               Conread position:240-673
               
               
               Cow position:chr15:20459423-20458976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 293

               
               
               Conread position:240-673
               
               
               Cow position:chr15:22553653-22553200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 164

               
               
               Conread position:240-673
               
               
               Cow position:chr15:25208871-25208441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 197

               
               
               Conread position:240-673
               
               
               Cow position:chr15:33624859-33625276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:298
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):177, 48

               
               
               Conread position:240-673
               
               
               Cow position:chr15:37381517-37381955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 79

               
               
               Conread position:240-673
               
               
               Cow position:chr15:39599337-39599764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 36

               
               
               Conread position:240-673
               
               
               Cow position:chr15:50322499-50322919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 46

               
               
               Conread position:240-674
               
               
               Cow position:chr15:30001584-30002015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 66

               
               
               Conread position:240-675
               
               
               Cow position:chr15:20487313-20486891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 37

               
               
               Conread position:240-675
               
               
               Cow position:chr15:51822038-51822468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:292
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):97, 123

               
               
               Conread position:240-676
               
               
               Cow position:chr15:39598132-39598565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 73

               
               
               Conread position:240-677
               
               
               Cow position:chr15:30986398-30985953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:317
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):97, 44

               
               
               Conread position:241-373
               
               
               Cow position:chr15:51558293-51558423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):107, 73

               
               
               Conread position:241-387
               
               
               Cow position:chr15:53006046-53005904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:241-392
               
               
               Cow position:chr15:20566806-20566955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:241-421
               
               
               Cow position:chr15:21520031-21520221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:241-422
               
               
               Cow position:chr15:16230118-16230293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):174, 70

               
               
               Conread position:241-467
               
               
               Cow position:chr15:21903518-21903293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):93, 32

               
               
               Conread position:241-492
               
               
               Cow position:chr15:19554037-19553780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):85, 248

               
               
               Conread position:241-521
               
               
               Cow position:chr15:10442622-10442332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):66, 184

               
               
               Conread position:241-539
               
               
               Cow position:chr15:23780182-23779882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):38, 98

               
               
               Conread position:241-574
               
               
               Cow position:chr15:4418513-4418172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 180

               
               
               Conread position:241-586
               
               
               Cow position:chr15:22930462-22930099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:247
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):7, 57

               
               
               Conread position:241-592
               
               
               Cow position:chr15:53037073-53036722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:252
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):239, 83

               
               
               Conread position:241-605
               
               
               Cow position:chr15:36887728-36888083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:258
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):177, 84

               
               
               Conread position:241-652
               
               
               Cow position:chr15:1722952-1722548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 66

               
               
               Conread position:241-663
               
               
               Cow position:chr15:12722973-12723400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 186

               
               
               Conread position:241-672
               
               
               Cow position:chr15:37644878-37645294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:295
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):86, 174

               
               
               Conread position:241-673
               
               
               Cow position:chr15:12304529-12304965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 8

               
               
               Conread position:241-673
               
               
               Cow position:chr15:13846676-13846253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:301
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):298, 68

               
               
               Conread position:241-673
               
               
               Cow position:chr15:22530970-22531385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:291
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):243, 77

               
               
               Conread position:241-678
               
               
               Cow position:chr15:17762796-17763229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 166

               
               
               Conread position:242-380
               
               
               Cow position:chr15:49959427-49959559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:242-412
               
               
               Cow position:chr15:8331307-8331142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:242-443
               
               
               Cow position:chr15:34223757-34223959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):19, 32

               
               
               Conread position:242-447
               
               
               Cow position:chr15:12045650-12045439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):85, 11

               
               
               Conread position:242-457
               
               
               Cow position:chr15:48095246-48095467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):84, 199

               
               
               Conread position:242-479
               
               
               Cow position:chr15:52316950-52317184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):171, 65

               
               
               Conread position:242-517
               
               
               Cow position:chr15:14987885-14988157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):87, 44

               
               
               Conread position:242-528
               
               
               Cow position:chr15:36846297-36845996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):72, 186

               
               
               Conread position:242-539
               
               
               Cow position:chr15:31929008-31928709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 94

               
               
               Conread position:242-588
               
               
               Cow position:chr15:28823922-28823579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):176, 34

               
               
               Conread position:242-672
               
               
               Cow position:chr15:26912178-26911756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 32

               
               
               Conread position:242-673
               
               
               Cow position:chr15:40957468-40957903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 122

               
               
               Conread position:242-675
               
               
               Cow position:chr15:35641901-35642346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 133

               
               
               Conread position:242-702
               
               
               Cow position:chr15:8665717-8665228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 120

               
               
               Conread position:243-436
               
               
               Cow position:chr15:8997181-8997382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):45, 41

               
               
               Conread position:243-446
               
               
               Cow position:chr15:8641999-8642213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):35, 201

               
               
               Conread position:243-453
               
               
               Cow position:chr15:38820593-38820798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:243-667
               
               
               Cow position:chr15:16603721-16604140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):240, 17

               
               
               Conread position:243-673
               
               
               Cow position:chr15:26158708-26158293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 196

               
               
               Conread position:244-637
               
               
               Cow position:chr15:33642984-33643374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 13

               
               
               Conread position:245-474
               
               
               Cow position:chr15:27063624-27063397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):173, 24

               
               
               Conread position:245-475
               
               
               Cow position:chr15:31637188-31637425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):71, 185

               
               
               Conread position:245-577
               
               
               Cow position:chr15:31042775-31043096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:239
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):169, 40

               
               
               Conread position:245-672
               
               
               Cow position:chr15:41225679-41225240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 202

               
               
               Conread position:245-673
               
               
               Cow position:chr15:21803772-21803333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 137

               
               
               Conread position:245-674
               
               
               Cow position:chr15:24994618-24994200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 22

               
               
               Conread position:246-425
               
               
               Cow position:chr15:12913605-12913424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):78, 84

               
               
               Conread position:246-462
               
               
               Cow position:chr15:26442108-26442327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:246-512
               
               
               Cow position:chr15:6427752-6427468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):61, 142

               
               
               Conread position:246-633
               
               
               Cow position:chr15:608037-608434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 181

               
               
               Conread position:246-640
               
               
               Cow position:chr15:16667604-16667208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 139

               
               
               Conread position:246-673
               
               
               Cow position:chr15:11658689-11658241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 199

               
               
               Conread position:246-674
               
               
               Cow position:chr15:26896805-26896386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 194

               
               
               Conread position:246-675
               
               
               Cow position:chr15:24967695-24968113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 62

               
               
               Conread position:249-466
               
               
               Cow position:chr15:10880984-10880768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):100, 48

               
               
               Conread position:249-630
               
               
               Cow position:chr15:244679-245055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 35

               
               
               Conread position:249-671
               
               
               Cow position:chr15:30316663-30316267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:292
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):163, 30

               
               
               Conread position:249-672
               
               
               Cow position:chr15:1330212-1329776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 280

               
               
               Conread position:250-409
               
               
               Cow position:chr15:5710310-5710459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:250-409
               
               
               Cow position:chr15:18704035-18703878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:250-465
               
               
               Cow position:chr15:49784383-49784170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):164, 70

               
               
               Conread position:250-478
               
               
               Cow position:chr15:20950150-20950382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):57, 86

               
               
               Conread position:250-539
               
               
               Cow position:chr15:5158269-5158564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:216
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):66, 177

               
               
               Conread position:250-601
               
               
               Cow position:chr15:18671551-18671192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 26

               
               
               Conread position:251-621
               
               
               Cow position:chr15:20422866-20422505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:266
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):215, 15

               
               
               Conread position:251-622
               
               
               Cow position:chr15:85347-84974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 142

               
               
               Conread position:251-670
               
               
               Cow position:chr15:45527-45094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:304
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):78, 34

               
               
               Conread position:252-686
               
               
               Cow position:chr15:5235091-5234667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):288, 32

               
               
               Conread position:253-411
               
               
               Cow position:chr15:49483527-49483687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:253-422
               
               
               Cow position:chr15:37719687-37719521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):161, 72

               
               
               Conread position:253-424
               
               
               Cow position:chr15:38386487-38386661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:253-469
               
               
               Cow position:chr15:15025068-15025286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):171, 42

               
               
               Conread position:253-514
               
               
               Cow position:chr15:13783067-13782803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):73, 120

               
               
               Conread position:253-592
               
               
               Cow position:chr15:34896662-34897010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:249
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):33, 73

               
               
               Conread position:253-673
               
               
               Cow position:chr15:26079445-26079047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:287
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):164, 81

               
               
               Conread position:253-674
               
               
               Cow position:chr15:21420848-21421267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 23

               
               
               Conread position:253-674
               
               
               Cow position:chr15:24797902-24797488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 68

               
               
               Conread position:254-539
               
               
               Cow position:chr15:9465576-9465867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:207
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):72, 272

               
               
               Conread position:254-579
               
               
               Cow position:chr15:915949-915612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:241
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):41, 101

               
               
               Conread position:254-597
               
               
               Cow position:chr15:11559450-11559105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 22

               
               
               Conread position:254-630
               
               
               Cow position:chr15:25906820-25907194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 72

               
               
               Conread position:254-650
               
               
               Cow position:chr15:5420980-5420583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 60

               
               
               Conread position:254-673
               
               
               Cow position:chr15:4485050-4485468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 171

               
               
               Conread position:255-456
               
               
               Cow position:chr15:7956176-7955966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):12, 56

               
               
               Conread position:256-673
               
               
               Cow position:chr15:39490757-39490327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:268
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):70, 99

               
               
               Conread position:257-529
               
               
               Cow position:chr15:20723077-20722809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):90, 67

               
               
               Conread position:257-539
               
               
               Cow position:chr15:14888732-14888451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):161, 52

               
               
               Conread position:257-591
               
               
               Cow position:chr15:8353946-8354289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 178

               
               
               Conread position:257-644
               
               
               Cow position:chr15:23696997-23696622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:277
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):141, 50

               
               
               Conread position:257-651
               
               
               Cow position:chr15:9622085-9622494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:268
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):69, 97

               
               
               Conread position:257-672
               
               
               Cow position:chr15:17196050-17196468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 170

               
               
               Conread position:258-415
               
               
               Cow position:chr15:16644882-16644723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):68, 39

               
               
               Conread position:258-422
               
               
               Cow position:chr15:5691008-5691169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):62, 79

               
               
               Conread position:258-430
               
               
               Cow position:chr15:36422524-36422693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):156, 15

               
               
               Conread position:258-446
               
               
               Cow position:chr15:10049408-10049217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):47, 82

               
               
               Conread position:258-598
               
               
               Cow position:chr15:10608403-10608053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:254
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):49, 21

               
               
               Conread position:258-605
               
               
               Cow position:chr15:23275439-23275794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 186

               
               
               Conread position:259-663
               
               
               Cow position:chr15:53163927-53164336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 99

               
               
               Conread position:259-671
               
               
               Cow position:chr15:52482922-52482505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 99

               
               
               Conread position:259-674
               
               
               Cow position:chr15:2953226-2952804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 75

               
               
               Conread position:260-550
               
               
               Cow position:chr15:34284502-34284212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 73

               
               
               Conread position:261-473
               
               
               Cow position:chr15:22984477-22984697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):39, 24

               
               
               Conread position:261-571
               
               
               Cow position:chr15:24982270-24981967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:229
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):44, 74

               
               
               Conread position:261-633
               
               
               Cow position:chr15:1804424-1804044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 50

               
               
               Conread position:261-671
               
               
               Cow position:chr15:38883051-38883478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 162

               
               
               Conread position:261-676
               
               
               Cow position:chr15:26903102-26903522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 49

               
               
               Conread position:262-539
               
               
               Cow position:chr15:38935314-38935597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):47, 118

               
               
               Conread position:263-675
               
               
               Cow position:chr15:26404199-26404595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:257
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):155, 63

               
               
               Conread position:264-585
               
               
               Cow position:chr15:24031109-24031426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):57, 90

               
               
               Conread position:265-478
               
               
               Cow position:chr15:52432251-52432473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):61, 210

               
               
               Conread position:265-670
               
               
               Cow position:chr15:38806592-38806174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:280
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):66, 173

               
               
               Conread position:267-604
               
               
               Cow position:chr15:11560603-11560256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:235
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):83, 259

               
               
               Conread position:272-605
               
               
               Cow position:chr15:39316923-39316575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:246
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):15, 39

               
               
               Conread position:272-667
               
               
               Cow position:chr15:31948923-31949318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:261
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):56, 98

               
               
               Conread position:274-538
               
               
               Cow position:chr15:12358957-12359224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):140, 6

               
               
               Conread position:279-615
               
               
               Cow position:chr15:22871544-22871876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):249, 7

               
               
               Conread position:284-521
               
               
               Cow position:chr15:5044544-5044311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):15, 51

               
               
               Conread position:286-465
               
               
               Cow position:chr15:10431748-10431928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):129, 7

               
               
               Conread position:287-600
               
               
               Cow position:chr15:12655983-12655657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 7

               
               
               Conread position:288-505
               
               
               Cow position:chr15:44280038-44280256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):21, 46

               
               
               Conread position:291-652
               
               
               Cow position:chr15:17353706-17353347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:251
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):172, 19

               
               
               Conread position:294-597
               
               
               Cow position:chr15:10737797-10737497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):126, 46

               
               
               Conread position:299-673
               
               
               Cow position:chr15:13554302-13554665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 33

               
               
               Conread position:302-673
               
               
               Cow position:chr15:20482900-20482513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:260
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):13, 120

               
               
               Conread position:305-509
               
               
               Cow position:chr15:32977894-32977685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):6, 131

               
               
               Conread position:306-663
               
               
               Cow position:chr15:42789195-42788840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 130

               
               
               Conread position:307-482
               
               
               Cow position:chr15:41582836-41583010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):112, 37

               
               
               Conread position:307-675
               
               
               Cow position:chr15:32287782-32287432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:261
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):233, 13

               
               
               Conread position:308-473
               
               
               Cow position:chr15:27016290-27016127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):97, 25

               
               
               Conread position:308-670
               
               
               Cow position:chr15:26421645-26421276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:256
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):7, 53

               
               
               Conread position:308-671
               
               
               Cow position:chr15:29604743-29604395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 29

               
               
               Conread position:310-457
               
               
               Cow position:chr15:2389653-2389804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):20, 126

               
               
               Conread position:310-477
               
               
               Cow position:chr15:25650451-25650289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:310-539
               
               
               Cow position:chr15:21166467-21166227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):108, 114

               
               
               Conread position:310-594
               
               
               Cow position:chr15:5726282-5726573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:215
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):14, 126

               
               
               Conread position:310-599
               
               
               Cow position:chr15:47592704-47592406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):148, 23

               
               
               Conread position:310-630
               
               
               Cow position:chr15:7535696-7535387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):217, 24

               
               
               Conread position:310-671
               
               
               Cow position:chr15:50302145-50302508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 14

               
               
               Conread position:310-673
               
               
               Cow position:chr15:39621297-39621662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 23

               
               
               Conread position:310-674
               
               
               Cow position:chr15:16583731-16583386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 27

               
               
               Conread position:310-675
               
               
               Cow position:chr15:33303283-33303659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:263
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):16, 34

               
               
               Conread position:311-467
               
               
               Cow position:chr15:14261297-14261142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):108, 22

               
               
               Conread position:311-475
               
               
               Cow position:chr15:40594547-40594379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:311-515
               
               
               Cow position:chr15:14176539-14176334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:166
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):113, 22

               
               
               Conread position:311-549
               
               
               Cow position:chr15:5929857-5930089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:311-558
               
               
               Cow position:chr15:35441118-35440868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:193
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):157, 22

               
               
               Conread position:311-591
               
               
               Cow position:chr15:29330966-29331249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 22

               
               
               Conread position:311-684
               
               
               Cow position:chr15:36782369-36781997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 23

               
               
               Conread position:312-672
               
               
               Cow position:chr15:46868754-46868390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 22

               
               
               Conread position:313-459
               
               
               Cow position:chr15:18776789-18776642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):106, 20

               
               
               Conread position:313-468
               
               
               Cow position:chr15:50660583-50660742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):59, 124

               
               
               Conread position:313-474
               
               
               Cow position:chr15:52878239-52878398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):98, 20

               
               
               Conread position:313-492
               
               
               Cow position:chr15:31024955-31025134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):105, 20

               
               
               Conread position:313-538
               
               
               Cow position:chr15:10563541-10563316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):101, 89

               
               
               Conread position:313-675
               
               
               Cow position:chr15:33306072-33306433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 21

               
               
               Conread position:314-458
               
               
               Cow position:chr15:39520131-39520276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):102, 30

               
               
               Conread position:314-507
               
               
               Cow position:chr15:6272924-6272730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):110, 13

               
               
               Conread position:314-574
               
               
               Cow position:chr15:17337325-17337587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):103, 19

               
               
               Conread position:317-552
               
               
               Cow position:chr15:35205186-35204947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):102, 16

               
               
               Conread position:317-673
               
               
               Cow position:chr15:35945496-35945866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):107, 16

               
               
               Conread position:318-577
               
               
               Cow position:chr15:50088945-50089214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):14, 65

               
               
               Conread position:320-671
               
               
               Cow position:chr15:16307390-16307738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 115

               
               
               Conread position:320-673
               
               
               Cow position:chr15:16543483-16543140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:259
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):54, 13

               
               
               Conread position:320-673
               
               
               Cow position:chr15:22136659-22137006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 13

               
               
               Conread position:321-521
               
               
               Cow position:chr15:16908403-16908603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):91, 12

               
               
               Conread position:322-583
               
               
               Cow position:chr15:12870893-12870626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:204
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):93, 11

               
               
               Conread position:322-671
               
               
               Cow position:chr15:21389192-21388842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 14

               
               
               Conread position:322-675
               
               
               Cow position:chr15:362997-363344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):96, 18

               
               
               Conread position:323-504
               
               
               Cow position:chr15:40415670-40415484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):16, 113

               
               
               Conread position:323-522
               
               
               Cow position:chr15:22442306-22442099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:323-539
               
               
               Cow position:chr15:9781443-9781653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):137, 10

               
               
               Conread position:323-686
               
               
               Cow position:chr15:6530876-6530506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 11

               
               
               Conread position:324-504
               
               
               Cow position:chr15:44237389-44237573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):94, 107

               
               
               Conread position:327-479
               
               
               Cow position:chr15:37284428-37284582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):87, 108

               
               
               Conread position:328-472
               
               
               Cow position:chr15:23719507-23719363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):91, 107

               
               
               Conread position:328-483
               
               
               Cow position:chr15:30794956-30795111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):150, 104

               
               
               Conread position:328-509
               
               
               Cow position:chr15:19920357-19920175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):72, 92

               
               
               Conread position:328-521
               
               
               Cow position:chr15:48711078-48710881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):77, 89

               
               
               Conread position:328-672
               
               
               Cow position:chr15:33976719-33976370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:253
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):88, 200

               
               
               Conread position:328-675
               
               
               Cow position:chr15:34207211-34206871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 91

               
               
               Conread position:329-673
               
               
               Cow position:chr15:41000093-40999734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 105

               
               
               Conread position:330-539
               
               
               Cow position:chr15:39326539-39326325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):54, 110

               
               
               Conread position:331-534
               
               
               Cow position:chr15:52809601-52809400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):87, 5

               
               
               Conread position:331-579
               
               
               Cow position:chr15:43599168-43599418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):84, 180

               
               
               Conread position:331-592
               
               
               Cow position:chr15:10660576-10660309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):84, 104

               
               
               Conread position:334-672
               
               
               Cow position:chr15:47843269-47842935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 90

               
               
               Conread position:334-674
               
               
               Cow position:chr15:4093951-4093599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 100

               
               
               Conread position:336-673
               
               
               Cow position:chr15:23768273-23767941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 103

               
               
               Conread position:337-601
               
               
               Cow position:chr15:6905062-6905317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):81, 45

               
               
               Conread position:337-670
               
               
               Cow position:chr15:10335742-10336076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 52

               
               
               Conread position:337-672
               
               
               Cow position:chr15:20351817-20352157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 102

               
               
               Conread position:337-673
               
               
               Cow position:chr15:45216824-45217144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):193, 26

               
               
               Conread position:337-674
               
               
               Cow position:chr15:44640881-44641223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 83

               
               
               Conread position:343-674
               
               
               Cow position:chr15:35417634-35417296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 95

               
               
               Conread position:344-673
               
               
               Cow position:chr15:4534903-4535231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 45

               
               
               Conread position:344-675
               
               
               Cow position:chr15:24128023-24128346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:234
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):134, 88

               
               
               Conread position:345-675
               
               
               Cow position:chr15:5729933-5730263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 94

               
               
               Conread position:346-673
               
               
               Cow position:chr15:5727649-5727962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:241
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):120, 58

               
               
               Conread position:347-591
               
               
               Cow position:chr15:3726119-3726364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):70, 88

               
               
               Conread position:347-672
               
               
               Cow position:chr15:16639772-16640107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 129

               
               
               Conread position:348-673
               
               
               Cow position:chr15:40343244-40343574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):71, 19

               
               
               Conread position:349-672
               
               
               Cow position:chr15:23568130-23567803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:253
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):65, 86

               
               
               Conread position:349-674
               
               
               Cow position:chr15:6657096-6657431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):77, 24

               
               
               Conread position:350-670
               
               
               Cow position:chr15:41360952-41360641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):68, 89

               
               
               Conread position:354-673
               
               
               Cow position:chr15:22713826-22713506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):46, 9

               
               
               Conread position:355-673
               
               
               Cow position:chr15:49739031-49738723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):108, 65

               
               
               Conread position:355-676
               
               
               Cow position:chr15:48486640-48486960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):130, 63

               
               
               Conread position:359-669
               
               
               Cow position:chr15:13515373-13515692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 79

               
               
               Conread position:367-600
               
               
               Cow position:chr15:23114849-23115099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:367-673
               
               
               Cow position:chr15:18720329-18720638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):111, 52

               
               
               Conread position:367-673
               
               
               Cow position:chr15:31283400-31283692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):62, 101

               
               
               Conread position:368-671
               
               
               Cow position:chr15:15880942-15881257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:226
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):61, 156

               
               
               Conread position:368-675
               
               
               Cow position:chr15:24128677-24128975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):62, 95

               
               
               Conread position:370-675
               
               
               Cow position:chr15:5571611-5571310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):60, 92

               
               
               Conread position:375-605
               
               
               Cow position:chr15:17859203-17858978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):153, 40

               
               
               Conread position:379-673
               
               
               Cow position:chr15:27280898-27281188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):47, 40

               
               
               Conread position:381-673
               
               
               Cow position:chr15:5632710-5632996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 106

               
               
               Conread position:390-631
               
               
               Cow position:chr15:38877266-38877021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:193
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):28, 48

               
               
               Conread position:390-674
               
               
               Cow position:chr15:9871376-9871085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 26

               
               
               Conread position:400-590
               
               
               Cow position:chr15:19119563-19119359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):20, 38

               
               
               Conread position:401-612
               
               
               Cow position:chr15:12441772-12441558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):84, 14

               
               
               Conread position:404-675
               
               
               Cow position:chr15:8962059-8962326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):26, 120

               
               
               Conread position:408-673
               
               
               Cow position:chr15:40009598-40009326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 30

               
               
               Conread position:414-673
               
               
               Cow position:chr15:15708049-15707796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):69, 22

               
               
               Conread position:414-675
               
               
               Cow position:chr15:20725551-20725289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:201
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):71, 22

               
               
               Conread position:417-640
               
               
               Cow position:chr15:4350535-4350309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):50, 19

               
               
               Conread position:417-674
               
               
               Cow position:chr15:47105109-47105362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 18

               
               
               Conread position:423-663
               
               
               Cow position:chr15:10845790-10846036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):7, 192

               
               
               Conread position:434-671
               
               
               Cow position:chr15:7750053-7749821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):40, 147

               
               
               Conread position:436-637
               
               
               Cow position:chr15:34145068-34144867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):31, 44

               
               
               Conread position:436-674
               
               
               Cow position:chr15:23927388-23927144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):44, 76

               
               
               Conread position:439-579
               
               
               Cow position:chr15:13684179-13684033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):29, 83

               
               
               Conread position:439-675
               
               
               Cow position:chr15:11363087-11362856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):25, 42

               
               
               Conread position:440-662
               
               
               Cow position:chr15:53402901-53402685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:440-667
               
               
               Cow position:chr15:28126955-28126731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):22, 14

               
               
               Conread position:440-673
               
               
               Cow position:chr15:52380378-52380615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):30, 109

               
               
               Conread position:440-673
               
               
               Cow position:chr15:53680670-53680444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):87, 41

               
               
               Conread position:456-673
               
               
               Cow position:chr15:41583015-41583234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:177
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):28, 14

               
               
               Conread position:478-665
               
               
               Cow position:chr15:43765656-43765850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):44, 108

               
               
               Conread position:162-524
               
               
               Cow position:chr16:7981055-7980707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):296, 21

               
               
               Conread position:162-662
               
               
               Cow position:chr16:32301716-32302211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 19

               
               
               Conread position:164-552
               
               
               Cow position:chr16:22207339-22206958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:281
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):65, 19

               
               
               Conread position:217-417
               
               
               Cow position:chr16:3048927-3049129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:217-417
               
               
               Cow position:chr16:4277327-4277529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:223-422
               
               
               Cow position:chr16:40029669-40029865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):192, 21

               
               
               Conread position:223-465
               
               
               Cow position:chr16:31575365-31575119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):105, 29

               
               
               Conread position:224-673
               
               
               Cow position:chr16:16264895-16265334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 65

               
               
               Conread position:225-468
               
               
               Cow position:chr16:17283659-17283418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):34, 90

               
               
               Conread position:229-671
               
               
               Cow position:chr16:51043856-51043400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:313
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):71, 19

               
               
               Conread position:233-467
               
               
               Cow position:chr16:11390065-11390313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):82, 43

               
               
               Conread position:233-605
               
               
               Cow position:chr16:34256827-34257211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):93, 21

               
               
               Conread position:234-412
               
               
               Cow position:chr16:56285487-56285657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):45, 15

               
               
               Conread position:234-421
               
               
               Cow position:chr16:9986849-9987048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):75, 15

               
               
               Conread position:234-422
               
               
               Cow position:chr16:8288744-8288928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):181, 18

               
               
               Conread position:234-434
               
               
               Cow position:chr16:45826513-45826713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):152, 77

               
               
               Conread position:234-455
               
               
               Cow position:chr16:12220896-12220666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):9, 208

               
               
               Conread position:234-463
               
               
               Cow position:chr16:12324664-12324432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):9, 96

               
               
               Conread position:234-463
               
               
               Cow position:chr16:45045022-45044796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:234-466
               
               
               Cow position:chr16:22323602-22323844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):92, 61

               
               
               Conread position:234-468
               
               
               Cow position:chr16:6609302-6609532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):66, 18

               
               
               Conread position:234-468
               
               
               Cow position:chr16:30174312-30174556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):10, 52

               
               
               Conread position:234-477
               
               
               Cow position:chr16:27728458-27728223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):9, 34

               
               
               Conread position:234-499
               
               
               Cow position:chr16:11584198-11584458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:200
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):9, 72

               
               
               Conread position:234-502
               
               
               Cow position:chr16:47303905-47304188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):82, 19

               
               
               Conread position:234-522
               
               
               Cow position:chr16:53792607-53792902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):9, 105

               
               
               Conread position:234-526
               
               
               Cow position:chr16:36286478-36286768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):14, 79

               
               
               Conread position:234-528
               
               
               Cow position:chr16:30036444-30036146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:234-591
               
               
               Cow position:chr16:33198225-33198591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 39

               
               
               Conread position:234-595
               
               
               Cow position:chr16:3304245-3303871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 59

               
               
               Conread position:234-597
               
               
               Cow position:chr16:27723416-27723053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:273
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):181, 15

               
               
               Conread position:234-613
               
               
               Cow position:chr16:7441893-7442281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 18

               
               
               Conread position:234-621
               
               
               Cow position:chr16:6887241-6887633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:252
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):117, 18

               
               
               Conread position:234-626
               
               
               Cow position:chr16:8231155-8231547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:271
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):33, 137

               
               
               Conread position:234-630
               
               
               Cow position:chr16:20205666-20205260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 18

               
               
               Conread position:234-641
               
               
               Cow position:chr16:53428462-53428050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:268
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):190, 82

               
               
               Conread position:234-662
               
               
               Cow position:chr16:22773182-22772744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 87

               
               
               Conread position:234-667
               
               
               Cow position:chr16:17746051-17745606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 18

               
               
               Conread position:234-671
               
               
               Cow position:chr16:7505284-7504866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 15

               
               
               Conread position:234-672
               
               
               Cow position:chr16:48095561-48095998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 86

               
               
               Conread position:234-673
               
               
               Cow position:chr16:238473-238026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 15

               
               
               Conread position:234-673
               
               
               Cow position:chr16:7151965-7152408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 39

               
               
               Conread position:234-673
               
               
               Cow position:chr16:8493781-8494227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:290
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):84, 119

               
               
               Conread position:234-673
               
               
               Cow position:chr16:39473950-39474373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 34

               
               
               Conread position:234-673
               
               
               Cow position:chr16:48145201-48145634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):234, 15

               
               
               Conread position:234-673
               
               
               Cow position:chr16:52834692-52835115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 87

               
               
               Conread position:234-674
               
               
               Cow position:chr16:51578240-51578656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 56

               
               
               Conread position:234-675
               
               
               Cow position:chr16:54579375-54578929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 101

               
               
               Conread position:234-676
               
               
               Cow position:chr16:8322788-8323222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 27

               
               
               Conread position:235-408
               
               
               Cow position:chr16:3938806-3938977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:235-422
               
               
               Cow position:chr16:7928174-7928366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:235-422
               
               
               Cow position:chr16:42253199-42253378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:235-436
               
               
               Cow position:chr16:38384284-38384480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):93, 50

               
               
               Conread position:235-473
               
               
               Cow position:chr16:12379135-12379386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):120, 209

               
               
               Conread position:235-510
               
               
               Cow position:chr16:11134779-11135054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 14

               
               
               Conread position:235-517
               
               
               Cow position:chr16:8461875-8462157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):51, 33

               
               
               Conread position:235-517
               
               
               Cow position:chr16:30305611-30305893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:205
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):115, 18

               
               
               Conread position:235-535
               
               
               Cow position:chr16:34753749-34754057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 14

               
               
               Conread position:235-539
               
               
               Cow position:chr16:56796448-56796766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:231
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):74, 14

               
               
               Conread position:235-551
               
               
               Cow position:chr16:54226408-54226715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 15

               
               
               Conread position:235-566
               
               
               Cow position:chr16:11083203-11082878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 93

               
               
               Conread position:235-572
               
               
               Cow position:chr16:9905302-9904955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 14

               
               
               Conread position:235-577
               
               
               Cow position:chr16:9600623-9600290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):10, 19

               
               
               Conread position:235-605
               
               
               Cow position:chr16:7418580-7418213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 41

               
               
               Conread position:235-648
               
               
               Cow position:chr16:8065678-8066091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:291
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):83, 203

               
               
               Conread position:235-666
               
               
               Cow position:chr16:50289365-50288929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 128

               
               
               Conread position:235-670
               
               
               Cow position:chr16:13306665-13307099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 14

               
               
               Conread position:235-670
               
               
               Cow position:chr16:13611232-13611681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 17

               
               
               Conread position:235-672
               
               
               Cow position:chr16:56082156-56082594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 17

               
               
               Conread position:235-673
               
               
               Cow position:chr16:13698724-13698273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 17

               
               
               Conread position:235-673
               
               
               Cow position:chr16:17143147-17142698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 253

               
               
               Conread position:235-673
               
               
               Cow position:chr16:45813491-45813931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 100

               
               
               Conread position:235-674
               
               
               Cow position:chr16:3245996-3246429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 101

               
               
               Conread position:235-674
               
               
               Cow position:chr16:29159320-29158895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):292, 41

               
               
               Conread position:235-674
               
               
               Cow position:chr16:49125983-49126420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 65

               
               
               Conread position:235-675
               
               
               Cow position:chr16:16597765-16597325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 14

               
               
               Conread position:236-417
               
               
               Cow position:chr16:24672655-24672838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):82, 16

               
               
               Conread position:236-422
               
               
               Cow position:chr16:28980038-28979851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):108, 85

               
               
               Conread position:236-444
               
               
               Cow position:chr16:30908744-30908951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):183, 13

               
               
               Conread position:236-469
               
               
               Cow position:chr16:47180959-47181194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):71, 157

               
               
               Conread position:236-473
               
               
               Cow position:chr16:32142297-32142058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):78, 16

               
               
               Conread position:236-474
               
               
               Cow position:chr16:29636038-29636264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):7, 74

               
               
               Conread position:236-488
               
               
               Cow position:chr16:34291095-34291342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):183, 16

               
               
               Conread position:236-513
               
               
               Cow position:chr16:42539372-42539664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):25, 209

               
               
               Conread position:236-515
               
               
               Cow position:chr16:9553254-9552984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:204
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):183, 13

               
               
               Conread position:236-528
               
               
               Cow position:chr16:16565315-16565034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):106, 49

               
               
               Conread position:236-559
               
               
               Cow position:chr16:23955626-23955951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:241
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):89, 13

               
               
               Conread position:236-629
               
               
               Cow position:chr16:46433119-46433514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 13

               
               
               Conread position:236-650
               
               
               Cow position:chr16:9985197-9985602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 13

               
               
               Conread position:236-651
               
               
               Cow position:chr16:24142746-24143149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 37

               
               
               Conread position:236-667
               
               
               Cow position:chr16:41752375-41752802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 131

               
               
               Conread position:236-672
               
               
               Cow position:chr16:53508786-53509224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 31

               
               
               Conread position:236-673
               
               
               Cow position:chr16:14242575-14242141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 154

               
               
               Conread position:236-674
               
               
               Cow position:chr16:26649428-26649870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 32

               
               
               Conread position:236-674
               
               
               Cow position:chr16:49125315-49125757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 44

               
               
               Conread position:236-675
               
               
               Cow position:chr16:10039638-10040075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 125

               
               
               Conread position:236-686
               
               
               Cow position:chr16:13689869-13689414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 84

               
               
               Conread position:237-420
               
               
               Cow position:chr16:10033069-10032884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):79, 15

               
               
               Conread position:237-430
               
               
               Cow position:chr16:19402560-19402753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):63, 88

               
               
               Conread position:237-431
               
               
               Cow position:chr16:10011643-10011841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):89, 181

               
               
               Conread position:237-473
               
               
               Cow position:chr16:21369984-21370220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):7, 39

               
               
               Conread position:237-474
               
               
               Cow position:chr16:20921356-20921124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):122, 13

               
               
               Conread position:237-492
               
               
               Cow position:chr16:12687912-12688162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):111, 70

               
               
               Conread position:237-521
               
               
               Cow position:chr16:33135134-33134859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:209
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):7, 51

               
               
               Conread position:237-528
               
               
               Cow position:chr16:37401445-37401163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):7, 95

               
               
               Conread position:237-531
               
               
               Cow position:chr16:44394491-44394169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:237
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):50, 12

               
               
               Conread position:237-539
               
               
               Cow position:chr16:22984954-22984657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 15

               
               
               Conread position:237-580
               
               
               Cow position:chr16:7583603-7583251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 199

               
               
               Conread position:237-592
               
               
               Cow position:chr16:29712620-29712262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:249
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):178, 16

               
               
               Conread position:237-605
               
               
               Cow position:chr16:31078898-31079267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 36

               
               
               Conread position:237-625
               
               
               Cow position:chr16:44584237-44584617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:268
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):5, 37

               
               
               Conread position:237-637
               
               
               Cow position:chr16:6344253-6344638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:276
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):178, 49

               
               
               Conread position:237-671
               
               
               Cow position:chr16:7136142-7136585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:299
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):177, 12

               
               
               Conread position:237-673
               
               
               Cow position:chr16:4059564-4059124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 13

               
               
               Conread position:237-673
               
               
               Cow position:chr16:19644093-19643660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 70

               
               
               Conread position:237-673
               
               
               Cow position:chr16:34998418-34998835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:294
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):89, 15

               
               
               Conread position:237-673
               
               
               Cow position:chr16:38905018-38905461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 244

               
               
               Conread position:238-392
               
               
               Cow position:chr16:8083723-8083880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):89, 65

               
               
               Conread position:238-415
               
               
               Cow position:chr16:17617158-17617336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):90, 12

               
               
               Conread position:238-417
               
               
               Cow position:chr16:14343785-14343604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):88, 17

               
               
               Conread position:238-421
               
               
               Cow position:chr16:29311731-29311543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):80, 14

               
               
               Conread position:238-422
               
               
               Cow position:chr16:21442406-21442592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):88, 14

               
               
               Conread position:238-426
               
               
               Cow position:chr16:8469883-8469693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):88, 14

               
               
               Conread position:238-471
               
               
               Cow position:chr16:33236080-33236317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):81, 14

               
               
               Conread position:238-472
               
               
               Cow position:chr16:15407353-15407589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):90, 15

               
               
               Conread position:238-476
               
               
               Cow position:chr16:50442756-50442512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):80, 121

               
               
               Conread position:238-521
               
               
               Cow position:chr16:39682896-39683182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):88, 15

               
               
               Conread position:238-539
               
               
               Cow position:chr16:40446471-40446153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:229
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):80, 11

               
               
               Conread position:238-574
               
               
               Cow position:chr16:54225312-54225646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):7, 184

               
               
               Conread position:238-603
               
               
               Cow position:chr16:47835121-47834763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):169, 8

               
               
               Conread position:238-606
               
               
               Cow position:chr16:14974337-14974704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:265
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:238-613
               
               
               Cow position:chr16:956682-957075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:261
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):88, 14

               
               
               Conread position:238-630
               
               
               Cow position:chr16:24855738-24855348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 48

               
               
               Conread position:238-634
               
               
               Cow position:chr16:11957376-11957780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 11

               
               
               Conread position:238-645
               
               
               Cow position:chr16:56874029-56874426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:273
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):76, 14

               
               
               Conread position:238-672
               
               
               Cow position:chr16:4911248-4911642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:301
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):225, 11

               
               
               Conread position:238-672
               
               
               Cow position:chr16:7076124-7075684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 184

               
               
               Conread position:238-673
               
               
               Cow position:chr16:23058230-23058671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:296
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):88, 14

               
               
               Conread position:238-673
               
               
               Cow position:chr16:46655484-46655047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:301
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):75, 9

               
               
               Conread position:238-673
               
               
               Cow position:chr16:47243165-47242717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:284
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):63, 14

               
               
               Conread position:238-674
               
               
               Cow position:chr16:38663504-38663948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 158

               
               
               Conread position:238-697
               
               
               Cow position:chr16:19670154-19670589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 82

               
               
               Conread position:239-405
               
               
               Cow position:chr16:23515563-23515729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:239-405
               
               
               Cow position:chr16:42107832-42107666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):80, 34

               
               
               Conread position:239-411
               
               
               Cow position:chr16:19282210-19282036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):87, 58

               
               
               Conread position:239-413
               
               
               Cow position:chr16:52325393-52325570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:239-417
               
               
               Cow position:chr16:28233102-28233280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):87, 34

               
               
               Conread position:239-420
               
               
               Cow position:chr16:27326919-27327104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:239-421
               
               
               Cow position:chr16:25419048-25419234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:239-422
               
               
               Cow position:chr16:9615012-9615196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):79, 166

               
               
               Conread position:239-422
               
               
               Cow position:chr16:10249614-10249800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):87, 13

               
               
               Conread position:239-422
               
               
               Cow position:chr16:24674470-24674659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):89, 14

               
               
               Conread position:239-424
               
               
               Cow position:chr16:18429791-18429604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:239-426
               
               
               Cow position:chr16:56912484-56912673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):70, 29

               
               
               Conread position:239-427
               
               
               Cow position:chr16:45278741-45278551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):86, 125

               
               
               Conread position:239-442
               
               
               Cow position:chr16:15415523-15415738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):87, 195

               
               
               Conread position:239-452
               
               
               Cow position:chr16:18572852-18573066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):173, 123

               
               
               Conread position:239-468
               
               
               Cow position:chr16:11359350-11359123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):176, 73

               
               
               Conread position:239-469
               
               
               Cow position:chr16:53408744-53408959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):176, 90

               
               
               Conread position:239-470
               
               
               Cow position:chr16:258080-258309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):89, 134

               
               
               Conread position:239-473
               
               
               Cow position:chr16:18243940-18243709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):75, 138

               
               
               Conread position:239-481
               
               
               Cow position:chr16:9730002-9730243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):79, 17

               
               
               Conread position:239-482
               
               
               Cow position:chr16:8953471-8953733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):77, 151

               
               
               Conread position:239-506
               
               
               Cow position:chr16:14841567-14841294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):61, 46

               
               
               Conread position:239-517
               
               
               Cow position:chr16:8018160-8017889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):174, 46

               
               
               Conread position:239-521
               
               
               Cow position:chr16:50931330-50931599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):127, 71

               
               
               Conread position:239-535
               
               
               Cow position:chr16:30186847-30186547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):87, 68

               
               
               Conread position:239-567
               
               
               Cow position:chr16:19047230-19047571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:234
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):94, 38

               
               
               Conread position:239-571
               
               
               Cow position:chr16:36120793-36121117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):179, 94

               
               
               Conread position:239-673
               
               
               Cow position:chr16:2223191-2223642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 194

               
               
               Conread position:239-673
               
               
               Cow position:chr16:8522188-8522622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 37

               
               
               Conread position:239-673
               
               
               Cow position:chr16:10032842-10032391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:304
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):87, 26

               
               
               Conread position:239-673
               
               
               Cow position:chr16:23472945-23472516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 68

               
               
               Conread position:239-673
               
               
               Cow position:chr16:47245790-47245353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:280
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):79, 124

               
               
               Conread position:239-674
               
               
               Cow position:chr16:7665843-7665395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 199

               
               
               Conread position:239-674
               
               
               Cow position:chr16:51598410-51598839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 95

               
               
               Conread position:239-675
               
               
               Cow position:chr16:21451053-21450611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 124

               
               
               Conread position:239-675
               
               
               Cow position:chr16:23483484-23483051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:303
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):114, 34

               
               
               Conread position:239-675
               
               
               Cow position:chr16:23822826-23823256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 46

               
               
               Conread position:239-675
               
               
               Cow position:chr16:31559107-31558655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 93

               
               
               Conread position:239-675
               
               
               Cow position:chr16:33299600-33299154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:296
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):111, 203

               
               
               Conread position:239-675
               
               
               Cow position:chr16:34168791-34168358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:292
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):111, 231

               
               
               Conread position:239-675
               
               
               Cow position:chr16:42969718-42970168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:295
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):59, 126

               
               
               Conread position:239-675
               
               
               Cow position:chr16:46752067-46752516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:285
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):98, 75

               
               
               Conread position:239-675
               
               
               Cow position:chr16:55042363-55042801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:296
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):87, 46

               
               
               Conread position:240-382
               
               
               Cow position:chr16:51216843-51216986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:240-408
               
               
               Cow position:chr16:5396613-5396783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:240-411
               
               
               Cow position:chr16:17746236-17746068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):8, 80

               
               
               Conread position:240-413
               
               
               Cow position:chr16:13791809-13791632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):76, 145

               
               
               Conread position:240-414
               
               
               Cow position:chr16:49733943-49734117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):89, 169

               
               
               Conread position:240-421
               
               
               Cow position:chr16:19478566-19478745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):173, 33

               
               
               Conread position:240-422
               
               
               Cow position:chr16:4102640-4102812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):177, 45

               
               
               Conread position:240-422
               
               
               Cow position:chr16:9513494-9513313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):175, 70

               
               
               Conread position:240-422
               
               
               Cow position:chr16:11653332-11653157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):175, 81

               
               
               Conread position:240-422
               
               
               Cow position:chr16:15714313-15714128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):55, 13

               
               
               Conread position:240-422
               
               
               Cow position:chr16:45193606-45193790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):81, 57

               
               
               Conread position:240-422
               
               
               Cow position:chr16:53451907-53451724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):25, 81

               
               
               Conread position:240-424
               
               
               Cow position:chr16:50569462-50569282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:240-449
               
               
               Cow position:chr16:9836579-9836782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):156, 65

               
               
               Conread position:240-453
               
               
               Cow position:chr16:14376983-14376769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):90, 194

               
               
               Conread position:240-462
               
               
               Cow position:chr16:7496451-7496235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):178, 33

               
               
               Conread position:240-464
               
               
               Cow position:chr16:8673408-8673633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):83, 22

               
               
               Conread position:240-466
               
               
               Cow position:chr16:44138289-44138518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):88, 13

               
               
               Conread position:240-469
               
               
               Cow position:chr16:42977676-42977436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):67, 112

               
               
               Conread position:240-470
               
               
               Cow position:chr16:18047950-18048185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):86, 187

               
               
               Conread position:240-474
               
               
               Cow position:chr16:9578291-9578525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):175, 85

               
               
               Conread position:240-475
               
               
               Cow position:chr16:20824679-20824442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):178, 195

               
               
               Conread position:240-476
               
               
               Cow position:chr16:7723901-7723665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):173, 57

               
               
               Conread position:240-482
               
               
               Cow position:chr16:5382387-5382135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):86, 12

               
               
               Conread position:240-492
               
               
               Cow position:chr16:28444285-28444542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):86, 198

               
               
               Conread position:240-505
               
               
               Cow position:chr16:8205880-8206132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):62, 33

               
               
               Conread position:240-506
               
               
               Cow position:chr16:42432915-42433183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):112, 74

               
               
               Conread position:240-511
               
               
               Cow position:chr16:38244416-38244698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):67, 99

               
               
               Conread position:240-521
               
               
               Cow position:chr16:56893414-56893695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):73, 13

               
               
               Conread position:240-522
               
               
               Cow position:chr16:44429078-44428796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:206
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):179, 13

               
               
               Conread position:240-534
               
               
               Cow position:chr16:45700278-45700578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):85, 114

               
               
               Conread position:240-535
               
               
               Cow position:chr16:45122244-45121942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 101

               
               
               Conread position:240-539
               
               
               Cow position:chr16:47852396-47852693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 79

               
               
               Conread position:240-551
               
               
               Cow position:chr16:40514291-40514593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:224
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):178, 76

               
               
               Conread position:240-564
               
               
               Cow position:chr16:8738269-8737935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 197

               
               
               Conread position:240-573
               
               
               Cow position:chr16:50933692-50934009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:233
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):132, 36

               
               
               Conread position:240-591
               
               
               Cow position:chr16:12320425-12320065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 193

               
               
               Conread position:240-592
               
               
               Cow position:chr16:51247147-51246790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:250
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):68, 167

               
               
               Conread position:240-593
               
               
               Cow position:chr16:12274273-12273909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:251
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):7, 28

               
               
               Conread position:240-630
               
               
               Cow position:chr16:45678179-45677783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 43

               
               
               Conread position:240-633
               
               
               Cow position:chr16:55784544-55784957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:268
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):67, 104

               
               
               Conread position:240-638
               
               
               Cow position:chr16:14685189-14685589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 88

               
               
               Conread position:240-643
               
               
               Cow position:chr16:42444362-42443947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 45

               
               
               Conread position:240-660
               
               
               Cow position:chr16:28395889-28396317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 33

               
               
               Conread position:240-663
               
               
               Cow position:chr16:54288068-54287651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:282
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):130, 13

               
               
               Conread position:240-665
               
               
               Cow position:chr16:49336422-49336000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):244, 79

               
               
               Conread position:240-666
               
               
               Cow position:chr16:18757633-18758072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 25

               
               
               Conread position:240-668
               
               
               Cow position:chr16:48957001-48956567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 210

               
               
               Conread position:240-671
               
               
               Cow position:chr16:42078646-42079075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 162

               
               
               Conread position:240-672
               
               
               Cow position:chr16:7542487-7542055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:316
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):174, 13

               
               
               Conread position:240-672
               
               
               Cow position:chr16:45047453-45047858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:303
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):178, 82

               
               
               Conread position:240-673
               
               
               Cow position:chr16:7429585-7429143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:308
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):7, 45

               
               
               Conread position:240-673
               
               
               Cow position:chr16:9933362-9932922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 132

               
               
               Conread position:240-673
               
               
               Cow position:chr16:23681563-23681137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):240, 87

               
               
               Conread position:240-673
               
               
               Cow position:chr16:29655516-29655091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 73

               
               
               Conread position:240-673
               
               
               Cow position:chr16:49229572-49230003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 36

               
               
               Conread position:240-674
               
               
               Cow position:chr16:8025667-8026081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 45

               
               
               Conread position:240-674
               
               
               Cow position:chr16:25839813-25839381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 46

               
               
               Conread position:240-674
               
               
               Cow position:chr16:39165435-39165009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 70

               
               
               Conread position:240-674
               
               
               Cow position:chr16:48385215-48385638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):244, 31

               
               
               Conread position:240-675
               
               
               Cow position:chr16:2751176-2750754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 40

               
               
               Conread position:241-432
               
               
               Cow position:chr16:9097226-9097033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):87, 11

               
               
               Conread position:241-433
               
               
               Cow position:chr16:12457883-12458076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):59, 24

               
               
               Conread position:241-434
               
               
               Cow position:chr16:30646710-30646520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:241-457
               
               
               Cow position:chr16:50286714-50286496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):87, 46

               
               
               Conread position:241-468
               
               
               Cow position:chr16:1582728-1582954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):173, 32

               
               
               Conread position:241-468
               
               
               Cow position:chr16:31149575-31149350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):172, 9

               
               
               Conread position:241-512
               
               
               Cow position:chr16:29528040-29527750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):58, 117

               
               
               Conread position:241-535
               
               
               Cow position:chr16:4971088-4970787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):6, 57

               
               
               Conread position:241-605
               
               
               Cow position:chr16:34153369-34153745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 12

               
               
               Conread position:241-633
               
               
               Cow position:chr16:45554634-45554243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 9

               
               
               Conread position:241-637
               
               
               Cow position:chr16:52274934-52275329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 78

               
               
               Conread position:241-652
               
               
               Cow position:chr16:51697276-51696881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:288
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):177, 44

               
               
               Conread position:241-656
               
               
               Cow position:chr16:52170253-52169848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 9

               
               
               Conread position:241-664
               
               
               Cow position:chr16:35758402-35757987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 44

               
               
               Conread position:241-667
               
               
               Cow position:chr16:47820775-47820342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 200

               
               
               Conread position:241-672
               
               
               Cow position:chr16:24128908-24128467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:292
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):85, 113

               
               
               Conread position:241-673
               
               
               Cow position:chr16:1548681-1549113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 12

               
               
               Conread position:241-673
               
               
               Cow position:chr16:6343705-6344148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:292
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):85, 114

               
               
               Conread position:241-673
               
               
               Cow position:chr16:15370885-15370444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 74

               
               
               Conread position:241-673
               
               
               Cow position:chr16:23564338-23563902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 8

               
               
               Conread position:241-673
               
               
               Cow position:chr16:50417510-50417922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:241-674
               
               
               Cow position:chr16:18353753-18354188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 33

               
               
               Conread position:241-674
               
               
               Cow position:chr16:44743929-44744368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:306
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):61, 44

               
               
               Conread position:241-674
               
               
               Cow position:chr16:46552993-46552582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 12

               
               
               Conread position:241-677
               
               
               Cow position:chr16:820452-820011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 84

               
               
               Conread position:242-409
               
               
               Cow position:chr16:48130196-48130362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:242-411
               
               
               Cow position:chr16:13906254-13906415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:242-411
               
               
               Cow position:chr16:41696206-41696039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:242-421
               
               
               Cow position:chr16:26069939-26069772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:242-422
               
               
               Cow position:chr16:16178225-16178051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):170, 64

               
               
               Conread position:242-468
               
               
               Cow position:chr16:15945051-15945284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):8, 197

               
               
               Conread position:242-473
               
               
               Cow position:chr16:56595187-56595422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):86, 180

               
               
               Conread position:242-539
               
               
               Cow position:chr16:11660270-11660547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):176, 71

               
               
               Conread position:242-555
               
               
               Cow position:chr16:55233878-55233574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):232, 72

               
               
               Conread position:242-577
               
               
               Cow position:chr16:56565788-56565453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):166, 41

               
               
               Conread position:242-650
               
               
               Cow position:chr16:8068616-8069030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 95

               
               
               Conread position:242-652
               
               
               Cow position:chr16:7582916-7582498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:276
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):83, 20

               
               
               Conread position:242-652
               
               
               Cow position:chr16:31117419-31117834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 16

               
               
               Conread position:242-652
               
               
               Cow position:chr16:45731205-45731589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 27

               
               
               Conread position:242-672
               
               
               Cow position:chr16:16232260-16231848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:286
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):5, 226

               
               
               Conread position:242-673
               
               
               Cow position:chr16:40333135-40333560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 65

               
               
               Conread position:242-673
               
               
               Cow position:chr16:48398058-48398481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 11

               
               
               Conread position:242-676
               
               
               Cow position:chr16:4856900-4857328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 8

               
               
               Conread position:243-417
               
               
               Cow position:chr16:11019314-11019490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):64, 95

               
               
               Conread position:243-477
               
               
               Cow position:chr16:15905044-15905287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):6, 31

               
               
               Conread position:243-478
               
               
               Cow position:chr16:11916008-11916256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:243-605
               
               
               Cow position:chr16:31348563-31348938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 31

               
               
               Conread position:244-467
               
               
               Cow position:chr16:12939815-12939591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):168, 65

               
               
               Conread position:244-635
               
               
               Cow position:chr16:41530110-41530488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 30

               
               
               Conread position:245-396
               
               
               Cow position:chr16:23881016-23881165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:245-410
               
               
               Cow position:chr16:31011525-31011359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:245-417
               
               
               Cow position:chr16:51143996-51143824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:245-421
               
               
               Cow position:chr16:11765058-11765230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):122, 67

               
               
               Conread position:245-484
               
               
               Cow position:chr16:16817028-16816782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):138, 41

               
               
               Conread position:245-485
               
               
               Cow position:chr16:17460374-17460122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):49, 188

               
               
               Conread position:245-500
               
               
               Cow position:chr16:48613281-48613535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):121, 83

               
               
               Conread position:245-505
               
               
               Cow position:chr16:31561951-31561685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):169, 89

               
               
               Conread position:245-528
               
               
               Cow position:chr16:26030679-26030972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):81, 102

               
               
               Conread position:245-656
               
               
               Cow position:chr16:48581124-48580708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:270
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):81, 109

               
               
               Conread position:245-671
               
               
               Cow position:chr16:50872992-50873409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:294
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):173, 40

               
               
               Conread position:245-672
               
               
               Cow position:chr16:43276227-43275788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 43

               
               
               Conread position:245-673
               
               
               Cow position:chr16:11008525-11008108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 46

               
               
               Conread position:245-674
               
               
               Cow position:chr16:29766517-29766107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 66

               
               
               Conread position:246-461
               
               
               Cow position:chr16:9959025-9958808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):169, 0

               
               
               Conread position:246-461
               
               
               Cow position:chr16:35297598-35297385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):80, 115

               
               
               Conread position:246-464
               
               
               Cow position:chr16:18953777-18953560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):113, 9

               
               
               Conread position:246-467
               
               
               Cow position:chr16:56265699-56265475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):82, 194

               
               
               Conread position:246-468
               
               
               Cow position:chr16:49860429-49860204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):168, 7

               
               
               Conread position:246-503
               
               
               Cow position:chr16:12077285-12077544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):69, 27

               
               
               Conread position:246-673
               
               
               Cow position:chr16:15824245-15824677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 91

               
               
               Conread position:249-412
               
               
               Cow position:chr16:4616491-4616653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:249-431
               
               
               Cow position:chr16:15949315-15949500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):77, 93

               
               
               Conread position:249-468
               
               
               Cow position:chr16:32893812-32893600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):169, 37

               
               
               Conread position:249-658
               
               
               Cow position:chr16:13712749-13713134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:290
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):169, 24

               
               
               Conread position:249-667
               
               
               Cow position:chr16:16402126-16402556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 91

               
               
               Conread position:250-429
               
               
               Cow position:chr16:16025636-16025446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:250-521
               
               
               Cow position:chr16:56665758-56665491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):169, 26

               
               
               Conread position:250-557
               
               
               Cow position:chr16:53089141-53089463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):63, 181

               
               
               Conread position:250-594
               
               
               Cow position:chr16:23034021-23033698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):61, 135

               
               
               Conread position:250-673
               
               
               Cow position:chr16:38708644-38709061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 36

               
               
               Conread position:250-675
               
               
               Cow position:chr16:10148459-10148044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 68

               
               
               Conread position:250-675
               
               
               Cow position:chr16:14754136-14754559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 35

               
               
               Conread position:250-676
               
               
               Cow position:chr16:14106836-14106409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 132

               
               
               Conread position:251-416
               
               
               Cow position:chr16:56580098-56579935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:251-468
               
               
               Cow position:chr16:7812884-7812663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):75, 216

               
               
               Conread position:251-531
               
               
               Cow position:chr16:19052824-19052547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):163, 35

               
               
               Conread position:251-673
               
               
               Cow position:chr16:29038108-29037681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 100

               
               
               Conread position:252-450
               
               
               Cow position:chr16:8090339-8090542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):50, 33

               
               
               Conread position:252-451
               
               
               Cow position:chr16:31484476-31484673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):108, 58

               
               
               Conread position:252-474
               
               
               Cow position:chr16:7626343-7626125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):161, 21

               
               
               Conread position:252-668
               
               
               Cow position:chr16:43323743-43324143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:274
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):74, 58

               
               
               Conread position:253-387
               
               
               Cow position:chr16:41653161-41653028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:253-412
               
               
               Cow position:chr16:34506534-34506381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:253-482
               
               
               Cow position:chr16:12010287-12010052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):54, 84

               
               
               Conread position:253-670
               
               
               Cow position:chr16:33704991-33704567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 57

               
               
               Conread position:253-673
               
               
               Cow position:chr16:18206144-18205736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 71

               
               
               Conread position:254-430
               
               
               Cow position:chr16:39385677-39385500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):160, 80

               
               
               Conread position:254-477
               
               
               Cow position:chr16:31241104-31241328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):72, 155

               
               
               Conread position:254-566
               
               
               Cow position:chr16:48146466-48146789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):55, 185

               
               
               Conread position:254-625
               
               
               Cow position:chr16:42201093-42200703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:265
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):74, 187

               
               
               Conread position:254-655
               
               
               Cow position:chr16:45676686-45677069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 19

               
               
               Conread position:254-674
               
               
               Cow position:chr16:26676501-26676926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 56

               
               
               Conread position:254-675
               
               
               Cow position:chr16:4910334-4910768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 184

               
               
               Conread position:254-675
               
               
               Cow position:chr16:7702703-7702294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 39

               
               
               Conread position:254-675
               
               
               Cow position:chr16:33646203-33645777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 80

               
               
               Conread position:254-675
               
               
               Cow position:chr16:53553528-53553954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:282
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):86, 228

               
               
               Conread position:254-692
               
               
               Cow position:chr16:8193644-8193191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 19

               
               
               Conread position:257-413
               
               
               Cow position:chr16:29060569-29060406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:257-418
               
               
               Cow position:chr16:33629605-33629447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):139, 29

               
               
               Conread position:257-421
               
               
               Cow position:chr16:11654229-11654063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):45, 28

               
               
               Conread position:257-422
               
               
               Cow position:chr16:8809912-8810075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):160, 67

               
               
               Conread position:257-509
               
               
               Cow position:chr16:51610640-51610906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:257-589
               
               
               Cow position:chr16:10504999-10504681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:241
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):157, 16

               
               
               Conread position:257-593
               
               
               Cow position:chr16:38243475-38243821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:245
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):69, 103

               
               
               Conread position:257-597
               
               
               Cow position:chr16:25387154-25386818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:240
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):84, 25

               
               
               Conread position:257-667
               
               
               Cow position:chr16:27701077-27701474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 80

               
               
               Conread position:257-672
               
               
               Cow position:chr16:14568306-14568719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 67

               
               
               Conread position:257-673
               
               
               Cow position:chr16:24703035-24702617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:288
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):34, 13

               
               
               Conread position:257-673
               
               
               Cow position:chr16:51501113-51500696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 77

               
               
               Conread position:258-481
               
               
               Cow position:chr16:22738463-22738240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):13, 164

               
               
               Conread position:258-670
               
               
               Cow position:chr16:23729734-23730171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 76

               
               
               Conread position:258-673
               
               
               Cow position:chr16:25170577-25170155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 177

               
               
               Conread position:259-637
               
               
               Cow position:chr16:45457137-45456757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:267
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):82, 26

               
               
               Conread position:259-674
               
               
               Cow position:chr16:4192248-4192656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 158

               
               
               Conread position:260-566
               
               
               Cow position:chr16:30369532-30369221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):38, 25

               
               
               Conread position:260-673
               
               
               Cow position:chr16:3614919-3614513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 31

               
               
               Conread position:261-539
               
               
               Cow position:chr16:12523239-12522958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):67, 24

               
               
               Conread position:261-673
               
               
               Cow position:chr16:42241942-42242353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 63

               
               
               Conread position:261-673
               
               
               Cow position:chr16:45139845-45139434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 84

               
               
               Conread position:264-516
               
               
               Cow position:chr16:1220000-1220260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:194
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):64, 57

               
               
               Conread position:265-482
               
               
               Cow position:chr16:56243711-56243927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):149, 62

               
               
               Conread position:265-675
               
               
               Cow position:chr16:13578678-13579080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:291
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):49, 75

               
               
               Conread position:266-673
               
               
               Cow position:chr16:18679365-18678962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:280
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):30, 110

               
               
               Conread position:267-540
               
               
               Cow position:chr16:33267896-33267615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):59, 166

               
               
               Conread position:267-586
               
               
               Cow position:chr16:47964646-47964967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):26, 58

               
               
               Conread position:268-608
               
               
               Cow position:chr16:23366401-23366072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):216, 68

               
               
               Conread position:268-673
               
               
               Cow position:chr16:37452440-37452849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 23

               
               
               Conread position:271-572
               
               
               Cow position:chr16:41578397-41578088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 48

               
               
               Conread position:272-674
               
               
               Cow position:chr16:51112711-51113113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 65

               
               
               Conread position:274-671
               
               
               Cow position:chr16:40562397-40561994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 20

               
               
               Conread position:276-605
               
               
               Cow position:chr16:10592609-10592264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 93

               
               
               Conread position:276-673
               
               
               Cow position:chr16:11615077-11615463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 157

               
               
               Conread position:276-673
               
               
               Cow position:chr16:33226372-33226767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 118

               
               
               Conread position:279-594
               
               
               Cow position:chr16:22380190-22380515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:231
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):21, 56

               
               
               Conread position:279-664
               
               
               Cow position:chr16:43105339-43105739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 124

               
               
               Conread position:280-637
               
               
               Cow position:chr16:17627088-17626731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:258
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):29, 7

               
               
               Conread position:280-673
               
               
               Cow position:chr16:48006332-48006726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 56

               
               
               Conread position:286-431
               
               
               Cow position:chr16:20265407-20265555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):16, 48

               
               
               Conread position:286-663
               
               
               Cow position:chr16:31122092-31122475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):8, 151

               
               
               Conread position:287-422
               
               
               Cow position:chr16:22927677-22927541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:289-672
               
               
               Cow position:chr16:6378972-6379344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 45

               
               
               Conread position:291-648
               
               
               Cow position:chr16:12634039-12633683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:267
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):14, 154

               
               
               Conread position:291-674
               
               
               Cow position:chr16:39646690-39646323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:272
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):11, 50

               
               
               Conread position:298-597
               
               
               Cow position:chr16:35297221-35296910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):20, 37

               
               
               Conread position:299-588
               
               
               Cow position:chr16:10773264-10772978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:214
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):228, 118

               
               
               Conread position:302-672
               
               
               Cow position:chr16:27014043-27013666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:251
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):34, 143

               
               
               Conread position:304-598
               
               
               Cow position:chr16:25380358-25380660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:223
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):120, 30

               
               
               Conread position:308-468
               
               
               Cow position:chr16:6310566-6310729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):15, 128

               
               
               Conread position:308-481
               
               
               Cow position:chr16:17291888-17292063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):23, 37

               
               
               Conread position:308-512
               
               
               Cow position:chr16:8273705-8273911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):99, 25

               
               
               Conread position:308-539
               
               
               Cow position:chr16:17903510-17903750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):21, 128

               
               
               Conread position:308-605
               
               
               Cow position:chr16:7550103-7549797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 72

               
               
               Conread position:308-607
               
               
               Cow position:chr16:8076369-8076681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:230
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):59, 25

               
               
               Conread position:308-652
               
               
               Cow position:chr16:14758866-14758516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:253
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):102, 28

               
               
               Conread position:308-655
               
               
               Cow position:chr16:43800786-43801126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 25

               
               
               Conread position:308-671
               
               
               Cow position:chr16:48340560-48340925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 27

               
               
               Conread position:308-672
               
               
               Cow position:chr16:19003399-19003753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 127

               
               
               Conread position:308-673
               
               
               Cow position:chr16:47509866-47510203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:257
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):178, 25

               
               
               Conread position:308-674
               
               
               Cow position:chr16:7499183-7498832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:266
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):106, 25

               
               
               Conread position:310-472
               
               
               Cow position:chr16:12097772-12097610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):109, 23

               
               
               Conread position:310-476
               
               
               Cow position:chr16:24403297-24403462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):23, 40

               
               
               Conread position:310-479
               
               
               Cow position:chr16:15953688-15953859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):108, 23

               
               
               Conread position:310-505
               
               
               Cow position:chr16:496245-496442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):104, 34

               
               
               Conread position:310-509
               
               
               Cow position:chr16:46430022-46430223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):108, 23

               
               
               Conread position:310-516
               
               
               Cow position:chr16:12501028-12501239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):16, 81

               
               
               Conread position:310-528
               
               
               Cow position:chr16:33869633-33869849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):10, 40

               
               
               Conread position:310-528
               
               
               Cow position:chr16:48545952-48545732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):109, 24

               
               
               Conread position:310-539
               
               
               Cow position:chr16:3114670-3114436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):104, 23

               
               
               Conread position:310-539
               
               
               Cow position:chr16:18052461-18052230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):95, 24

               
               
               Conread position:310-671
               
               
               Cow position:chr16:5727061-5726693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:276
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):114, 23

               
               
               Conread position:310-671
               
               
               Cow position:chr16:39394700-39394343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:248
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):23, 11

               
               
               Conread position:310-673
               
               
               Cow position:chr16:5364032-5363657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 23

               
               
               Conread position:310-673
               
               
               Cow position:chr16:20025573-20025209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 104

               
               
               Conread position:310-673
               
               
               Cow position:chr16:22009280-22008911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:255
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):29, 87

               
               
               Conread position:310-673
               
               
               Cow position:chr16:45610114-45609752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:254
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):114, 14

               
               
               Conread position:310-673
               
               
               Cow position:chr16:49169250-49169618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 23

               
               
               Conread position:310-673
               
               
               Cow position:chr16:56875533-56875888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 34

               
               
               Conread position:310-674
               
               
               Cow position:chr16:11806803-11806445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 23

               
               
               Conread position:310-674
               
               
               Cow position:chr16:15960159-15960531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 24

               
               
               Conread position:310-675
               
               
               Cow position:chr16:42633615-42633985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:276
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):114, 14

               
               
               Conread position:310-693
               
               
               Cow position:chr16:45785868-45785482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 23

               
               
               Conread position:311-459
               
               
               Cow position:chr16:48448853-48448704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):104, 56

               
               
               Conread position:311-471
               
               
               Cow position:chr16:39202270-39202109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):107, 124

               
               
               Conread position:311-518
               
               
               Cow position:chr16:40700607-40700808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:311-611
               
               
               Cow position:chr16:47855068-47854769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):105, 23

               
               
               Conread position:311-671
               
               
               Cow position:chr16:5415633-5415986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:251
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):157, 24

               
               
               Conread position:311-671
               
               
               Cow position:chr16:29608639-29608285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 23

               
               
               Conread position:311-672
               
               
               Cow position:chr16:8933298-8933654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 22

               
               
               Conread position:311-702
               
               
               Cow position:chr16:8811966-8812352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 22

               
               
               Conread position:312-674
               
               
               Cow position:chr16:35188378-35188018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 21

               
               
               Conread position:312-675
               
               
               Cow position:chr16:19408399-19408750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 15

               
               
               Conread position:313-465
               
               
               Cow position:chr16:1415175-1415323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):120, 20

               
               
               Conread position:313-494
               
               
               Cow position:chr16:33530537-33530357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):111, 21

               
               
               Conread position:313-500
               
               
               Cow position:chr16:30601549-30601355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):102, 21

               
               
               Conread position:313-539
               
               
               Cow position:chr16:10945313-10945531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):102, 20

               
               
               Conread position:313-567
               
               
               Cow position:chr16:30135769-30136027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):65, 33

               
               
               Conread position:313-594
               
               
               Cow position:chr16:17945651-17945362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 122

               
               
               Conread position:313-604
               
               
               Cow position:chr16:54734364-54734067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):117, 52

               
               
               Conread position:313-605
               
               
               Cow position:chr16:17282786-17282496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 20

               
               
               Conread position:313-663
               
               
               Cow position:chr16:16548737-16548386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 30

               
               
               Conread position:314-555
               
               
               Cow position:chr16:21040157-21039910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):25, 123

               
               
               Conread position:314-673
               
               
               Cow position:chr16:5257123-5256768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 13

               
               
               Conread position:314-675
               
               
               Cow position:chr16:30036863-30037231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 105

               
               
               Conread position:315-539
               
               
               Cow position:chr16:43675002-43674774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):23, 125

               
               
               Conread position:315-594
               
               
               Cow position:chr16:41689819-41689537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):101, 9

               
               
               Conread position:316-520
               
               
               Cow position:chr16:30358938-30359142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):108, 17

               
               
               Conread position:316-672
               
               
               Cow position:chr16:16096861-16096503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 31

               
               
               Conread position:316-673
               
               
               Cow position:chr16:3634241-3633880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 23

               
               
               Conread position:316-683
               
               
               Cow position:chr16:36203491-36203860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 35

               
               
               Conread position:318-477
               
               
               Cow position:chr16:12133985-12133823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):20, 117

               
               
               Conread position:319-520
               
               
               Cow position:chr16:42241167-42240968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):99, 15

               
               
               Conread position:319-528
               
               
               Cow position:chr16:44683532-44683750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):7, 65

               
               
               Conread position:319-528
               
               
               Cow position:chr16:45299805-45300014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):47, 42

               
               
               Conread position:319-669
               
               
               Cow position:chr16:22919589-22919265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):95, 14

               
               
               Conread position:319-673
               
               
               Cow position:chr16:4626268-4626630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 190

               
               
               Conread position:319-684
               
               
               Cow position:chr16:4399858-4399474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:273
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):88, 123

               
               
               Conread position:320-539
               
               
               Cow position:chr16:11940158-11939941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):98, 13

               
               
               Conread position:320-604
               
               
               Cow position:chr16:20069953-20069658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):98, 14

               
               
               Conread position:320-608
               
               
               Cow position:chr16:52133395-52133689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 100

               
               
               Conread position:320-671
               
               
               Cow position:chr16:13195217-13195566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:256
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):21, 65

               
               
               Conread position:320-673
               
               
               Cow position:chr16:30715628-30715257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 113

               
               
               Conread position:320-676
               
               
               Cow position:chr16:48494433-48494794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 17

               
               
               Conread position:321-528
               
               
               Cow position:chr16:34220306-34220095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):93, 12

               
               
               Conread position:321-625
               
               
               Cow position:chr16:17289068-17288754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 114

               
               
               Conread position:321-673
               
               
               Cow position:chr16:51869759-51869403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:251
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):103, 13

               
               
               Conread position:322-657
               
               
               Cow position:chr16:53830473-53830809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 12

               
               
               Conread position:322-670
               
               
               Cow position:chr16:52854902-52855253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:258
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):69, 130

               
               
               Conread position:322-673
               
               
               Cow position:chr16:7619066-7619431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:259
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):162, 11

               
               
               Conread position:322-673
               
               
               Cow position:chr16:9973380-9973737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 12

               
               
               Conread position:322-673
               
               
               Cow position:chr16:42340315-42339970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 5

               
               
               Conread position:323-671
               
               
               Cow position:chr16:4698872-4699203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 14

               
               
               Conread position:323-674
               
               
               Cow position:chr16:32132625-32132292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 14

               
               
               Conread position:324-608
               
               
               Cow position:chr16:4902702-4902415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:211
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):105, 10

               
               
               Conread position:324-673
               
               
               Cow position:chr16:13969251-13969614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:248
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):25, 202

               
               
               Conread position:325-673
               
               
               Cow position:chr16:8438535-8438860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:253
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):99, 158

               
               
               Conread position:327-506
               
               
               Cow position:chr16:8768908-8768735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:328-450
               
               
               Cow position:chr16:31046566-31046690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:103
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):85, 107

               
               
               Conread position:328-467
               
               
               Cow position:chr16:44713366-44713507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):24, 55

               
               
               Conread position:328-553
               
               
               Cow position:chr16:29677520-29677746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):87, 107

               
               
               Conread position:328-586
               
               
               Cow position:chr16:21317479-21317739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):87, 96

               
               
               Conread position:328-638
               
               
               Cow position:chr16:42345500-42345806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:225
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):90, 16

               
               
               Conread position:328-671
               
               
               Cow position:chr16:15809092-15808738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):91, 128

               
               
               Conread position:328-673
               
               
               Cow position:chr16:18402800-18402462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:255
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):86, 31

               
               
               Conread position:329-556
               
               
               Cow position:chr16:21761857-21762093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):89, 101

               
               
               Conread position:329-674
               
               
               Cow position:chr16:23738294-23737947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 109

               
               
               Conread position:330-539
               
               
               Cow position:chr16:50667403-50667185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):88, 105

               
               
               Conread position:330-667
               
               
               Cow position:chr16:56831630-56831969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 27

               
               
               Conread position:331-567
               
               
               Cow position:chr16:27160753-27160988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):93, 88

               
               
               Conread position:333-673
               
               
               Cow position:chr16:5636693-5636357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 82

               
               
               Conread position:337-516
               
               
               Cow position:chr16:38091118-38091302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):82, 42

               
               
               Conread position:337-535
               
               
               Cow position:chr16:42176750-42176547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):78, 12

               
               
               Conread position:337-605
               
               
               Cow position:chr16:5836690-5836411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:210
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):81, 194

               
               
               Conread position:337-630
               
               
               Cow position:chr16:41696987-41697283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 143

               
               
               Conread position:337-670
               
               
               Cow position:chr16:27659641-27659958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):77, 163

               
               
               Conread position:337-670
               
               
               Cow position:chr16:53627323-53627655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 193

               
               
               Conread position:337-672
               
               
               Cow position:chr16:45702867-45703210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:238
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):78, 119

               
               
               Conread position:338-517
               
               
               Cow position:chr16:50370698-50370517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):79, 97

               
               
               Conread position:338-534
               
               
               Cow position:chr16:32807189-32807388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):67, 42

               
               
               Conread position:340-674
               
               
               Cow position:chr16:570818-571153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):199, 73

               
               
               Conread position:344-520
               
               
               Cow position:chr16:13648425-13648255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:345-518
               
               
               Cow position:chr16:31426439-31426264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):70, 90

               
               
               Conread position:346-473
               
               
               Cow position:chr16:19815151-19815280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):72, 89

               
               
               Conread position:346-667
               
               
               Cow position:chr16:11105650-11105319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 89

               
               
               Conread position:346-672
               
               
               Cow position:chr16:25484431-25484133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:346-674
               
               
               Cow position:chr16:18141231-18141566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:239
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):62, 91

               
               
               Conread position:347-667
               
               
               Cow position:chr16:25965594-25965277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:232
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):133, 68

               
               
               Conread position:349-675
               
               
               Cow position:chr16:32327751-32327415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 75

               
               
               Conread position:353-485
               
               
               Cow position:chr16:9597362-9597496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):61, 85

               
               
               Conread position:354-657
               
               
               Cow position:chr16:47643502-47643200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:225
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):60, 77

               
               
               Conread position:354-667
               
               
               Cow position:chr16:27261863-27262174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):64, 57

               
               
               Conread position:354-673
               
               
               Cow position:chr16:39513988-39514313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 40

               
               
               Conread position:356-604
               
               
               Cow position:chr16:50521562-50521308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):68, 11

               
               
               Conread position:359-670
               
               
               Cow position:chr16:675573-675261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):60, 101

               
               
               Conread position:364-674
               
               
               Cow position:chr16:13752054-13752360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 71

               
               
               Conread position:367-601
               
               
               Cow position:chr16:31269215-31268974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):46, 57

               
               
               Conread position:367-674
               
               
               Cow position:chr16:3289083-3288796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):63, 101

               
               
               Conread position:368-603
               
               
               Cow position:chr16:38191549-38191303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):13, 97

               
               
               Conread position:368-610
               
               
               Cow position:chr16:54084110-54083858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):51, 71

               
               
               Conread position:368-614
               
               
               Cow position:chr16:45645614-45645867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):49, 33

               
               
               Conread position:368-673
               
               
               Cow position:chr16:35937411-35937101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 38

               
               
               Conread position:372-608
               
               
               Cow position:chr16:9136238-9136001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):90, 51

               
               
               Conread position:373-675
               
               
               Cow position:chr16:53048621-53048314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):57, 113

               
               
               Conread position:375-630
               
               
               Cow position:chr16:4981310-4981573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):44, 63

               
               
               Conread position:375-650
               
               
               Cow position:chr16:22860702-22860971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):44, 107

               
               
               Conread position:375-678
               
               
               Cow position:chr16:13232882-13233185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):44, 63

               
               
               Conread position:376-675
               
               
               Cow position:chr16:31978120-31978425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):54, 133

               
               
               Conread position:377-637
               
               
               Cow position:chr16:11085317-11085578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):42, 64

               
               
               Conread position:378-605
               
               
               Cow position:chr16:22123906-22124124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):33, 41

               
               
               Conread position:381-632
               
               
               Cow position:chr16:21369545-21369286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:201
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):82, 34

               
               
               Conread position:381-655
               
               
               Cow position:chr16:28692667-28692927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):81, 39

               
               
               Conread position:389-674
               
               
               Cow position:chr16:30143153-30143449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:221
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):29, 49

               
               
               Conread position:390-660
               
               
               Cow position:chr16:39237998-39237719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 35

               
               
               Conread position:390-684
               
               
               Cow position:chr16:21905214-21904916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 47

               
               
               Conread position:394-620
               
               
               Cow position:chr16:53037588-53037805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):135, 41

               
               
               Conread position:396-594
               
               
               Cow position:chr16:50533100-50532903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):22, 38

               
               
               Conread position:399-601
               
               
               Cow position:chr16:10650845-10651057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:399-605
               
               
               Cow position:chr16:7496236-7496030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):81, 16

               
               
               Conread position:400-670
               
               
               Cow position:chr16:26342308-26342045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):24, 19

               
               
               Conread position:401-672
               
               
               Cow position:chr16:4145104-4144830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 18

               
               
               Conread position:404-576
               
               
               Cow position:chr16:14699959-14699777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):15, 35

               
               
               Conread position:405-674
               
               
               Cow position:chr16:4372456-4372732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):14, 33

               
               
               Conread position:407-666
               
               
               Cow position:chr16:27249439-27249181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:207
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):12, 31

               
               
               Conread position:411-670
               
               
               Cow position:chr16:13973257-13973514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:200
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):7, 25

               
               
               Conread position:414-667
               
               
               Cow position:chr16:16424586-16424833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:192
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):125, 6

               
               
               Conread position:415-671
               
               
               Cow position:chr16:30639361-30639108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):116, 20

               
               
               Conread position:417-632
               
               
               Cow position:chr16:33230098-33229879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):62, 19

               
               
               Conread position:417-671
               
               
               Cow position:chr16:56912691-56912954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):63, 107

               
               
               Conread position:417-673
               
               
               Cow position:chr16:13791539-13791278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 18

               
               
               Conread position:417-674
               
               
               Cow position:chr16:22868156-22868411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:200
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):110, 19

               
               
               Conread position:418-659
               
               
               Cow position:chr16:39417099-39417338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):49, 17

               
               
               Conread position:419-673
               
               
               Cow position:chr16:4712920-4712666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):120, 17

               
               
               Conread position:425-675
               
               
               Cow position:chr16:26501172-26500924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):58, 11

               
               
               Conread position:434-663
               
               
               Cow position:chr16:31159566-31159803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):41, 51

               
               
               Conread position:434-670
               
               
               Cow position:chr16:11568112-11568345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):46, 67

               
               
               Conread position:434-673
               
               
               Cow position:chr16:29067167-29066933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):113, 89

               
               
               Conread position:434-673
               
               
               Cow position:chr16:47620385-47620145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:189
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):33, 51

               
               
               Conread position:436-590
               
               
               Cow position:chr16:28198289-28198134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):97, 26

               
               
               Conread position:436-665
               
               
               Cow position:chr16:4103158-4103384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:183
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):31, 14

               
               
               Conread position:436-670
               
               
               Cow position:chr16:42253554-42253806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:193
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:436-673
               
               
               Cow position:chr16:14028625-14028850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):25, 47

               
               
               Conread position:436-673
               
               
               Cow position:chr16:23810915-23810687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):45, 21

               
               
               Conread position:436-674
               
               
               Cow position:chr16:30209754-30209526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):91, 28

               
               
               Conread position:436-674
               
               
               Cow position:chr16:53613314-53613062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):39, 92

               
               
               Conread position:439-674
               
               
               Cow position:chr16:25287690-25287927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:183
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):93, 31

               
               
               Conread position:439-675
               
               
               Cow position:chr16:9790630-9790868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):46, 81

               
               
               Conread position:439-675
               
               
               Cow position:chr16:51399750-51399983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):80, 37

               
               
               Conread position:440-673
               
               
               Cow position:chr16:44973494-44973261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):87, 79

               
               
               Conread position:440-675
               
               
               Cow position:chr16:39385410-39385164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:186
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:442-673
               
               
               Cow position:chr16:50189593-50189829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):85, 77

               
               
               Conread position:444-675
               
               
               Cow position:chr16:7082732-7082970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):20, 81

               
               
               Conread position:449-675
               
               
               Cow position:chr16:4293706-4293475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:468-673
               
               
               Cow position:chr16:56198493-56198283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):59, 51

               
               
               Conread position:471-673
               
               
               Cow position:chr16:19632805-19633008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):15, 54

               
               
               Conread position:485-673
               
               
               Cow position:chr16:33752150-33751963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):42, 34

               
               
               Conread position:485-674
               
               
               Cow position:chr16:30939688-30939497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):42, 35

               
               
               Conread position:510-674
               
               
               Cow position:chr16:5293588-5293426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):17, 10

               
               
               Conread position:219-556
               
               
               Cow position:chr17:22128188-22127846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):24, 38

               
               
               Conread position:226-442
               
               
               Cow position:chr17:41380261-41380466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:227-431
               
               
               Cow position:chr17:11148342-11148151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:233-431
               
               
               Cow position:chr17:32978689-32978882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):194, 20

               
               
               Conread position:233-486
               
               
               Cow position:chr17:31559820-31559559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):85, 212

               
               
               Conread position:234-412
               
               
               Cow position:chr17:37973811-37973997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):67, 15

               
               
               Conread position:234-417
               
               
               Cow position:chr17:26183595-26183409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:234-421
               
               
               Cow position:chr17:18775942-18776127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):181, 19

               
               
               Conread position:234-422
               
               
               Cow position:chr17:11055919-11056099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:234-422
               
               
               Cow position:chr17:32220635-32220827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):80, 19

               
               
               Conread position:234-430
               
               
               Cow position:chr17:10016525-10016328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):180, 110

               
               
               Conread position:234-431
               
               
               Cow position:chr17:11985638-11985830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):128, 50

               
               
               Conread position:234-442
               
               
               Cow position:chr17:9260364-9260570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):96, 15

               
               
               Conread position:234-454
               
               
               Cow position:chr17:33653445-33653664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):140, 50

               
               
               Conread position:234-457
               
               
               Cow position:chr17:12019312-12019521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):171, 15

               
               
               Conread position:234-466
               
               
               Cow position:chr17:26561890-26562129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):9, 16

               
               
               Conread position:234-475
               
               
               Cow position:chr17:21471939-21472174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):100, 142

               
               
               Conread position:234-478
               
               
               Cow position:chr17:4817777-4817530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):93, 18

               
               
               Conread position:234-517
               
               
               Cow position:chr17:18818809-18818530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):104, 19

               
               
               Conread position:234-521
               
               
               Cow position:chr17:33067321-33067602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):73, 12

               
               
               Conread position:234-524
               
               
               Cow position:chr17:28982424-28982134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):75, 13

               
               
               Conread position:234-528
               
               
               Cow position:chr17:26757196-26757510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):75, 139

               
               
               Conread position:234-573
               
               
               Cow position:chr17:25513869-25514221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 207

               
               
               Conread position:234-586
               
               
               Cow position:chr17:15303726-15304098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:245
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):89, 18

               
               
               Conread position:234-590
               
               
               Cow position:chr17:24559540-24559178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:250
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):92, 18

               
               
               Conread position:234-603
               
               
               Cow position:chr17:18202010-18201631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:262
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):8, 122

               
               
               Conread position:234-613
               
               
               Cow position:chr17:32280917-32280531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 220

               
               
               Conread position:234-620
               
               
               Cow position:chr17:30728755-30728377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 200

               
               
               Conread position:234-633
               
               
               Cow position:chr17:4786233-4786650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:290
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):46, 201

               
               
               Conread position:234-635
               
               
               Cow position:chr17:9965775-9966189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:280
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:234-637
               
               
               Cow position:chr17:26631559-26631974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:268
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):67, 122

               
               
               Conread position:234-650
               
               
               Cow position:chr17:20932576-20932158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 15

               
               
               Conread position:234-670
               
               
               Cow position:chr17:32553803-32554217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 15

               
               
               Conread position:234-671
               
               
               Cow position:chr17:32471541-32471986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:234-672
               
               
               Cow position:chr17:5731166-5730730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:286
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):105, 224

               
               
               Conread position:234-673
               
               
               Cow position:chr17:24587872-24587424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 100

               
               
               Conread position:234-673
               
               
               Cow position:chr17:32278655-32279101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 220

               
               
               Conread position:234-675
               
               
               Cow position:chr17:11397914-11397470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 18

               
               
               Conread position:234-686
               
               
               Cow position:chr17:16446178-16446637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 147

               
               
               Conread position:235-364
               
               
               Cow position:chr17:20930551-20930420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):8, 94

               
               
               Conread position:235-410
               
               
               Cow position:chr17:27922475-27922645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):44, 14

               
               
               Conread position:235-432
               
               
               Cow position:chr17:30900562-30900362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):91, 119

               
               
               Conread position:235-455
               
               
               Cow position:chr17:5038809-5039022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:235-464
               
               
               Cow position:chr17:43957907-43957676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):93, 18

               
               
               Conread position:235-478
               
               
               Cow position:chr17:7571353-7571105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):91, 203

               
               
               Conread position:235-556
               
               
               Cow position:chr17:17193737-17193413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:233
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):76, 168

               
               
               Conread position:235-652
               
               
               Cow position:chr17:10458687-10459109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 57

               
               
               Conread position:235-671
               
               
               Cow position:chr17:20780772-20780318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 266

               
               
               Conread position:236-411
               
               
               Cow position:chr17:25702850-25702672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:236-426
               
               
               Cow position:chr17:19899146-19898946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):79, 193

               
               
               Conread position:236-517
               
               
               Cow position:chr17:17044086-17044371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):8, 77

               
               
               Conread position:236-521
               
               
               Cow position:chr17:33154912-33155197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):104, 81

               
               
               Conread position:236-522
               
               
               Cow position:chr17:18267506-18267212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):94, 49

               
               
               Conread position:236-542
               
               
               Cow position:chr17:36814610-36814297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:227
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):90, 16

               
               
               Conread position:236-559
               
               
               Cow position:chr17:25342494-25342824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:231
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):95, 208

               
               
               Conread position:236-599
               
               
               Cow position:chr17:7802927-7803295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:260
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):93, 17

               
               
               Conread position:236-634
               
               
               Cow position:chr17:18146437-18146027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 194

               
               
               Conread position:236-667
               
               
               Cow position:chr17:17222588-17222154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 11

               
               
               Conread position:236-671
               
               
               Cow position:chr17:11664331-11664783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 207

               
               
               Conread position:236-672
               
               
               Cow position:chr17:42419950-42419538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:296
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):93, 16

               
               
               Conread position:236-674
               
               
               Cow position:chr17:5898278-5898720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 257

               
               
               Conread position:236-674
               
               
               Cow position:chr17:16371508-16371056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 104

               
               
               Conread position:236-674
               
               
               Cow position:chr17:27795900-27795452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 16

               
               
               Conread position:237-382
               
               
               Cow position:chr17:20782953-20783094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:237-412
               
               
               Cow position:chr17:33288247-33288409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:237-422
               
               
               Cow position:chr17:15883919-15883730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):89, 15

               
               
               Conread position:237-422
               
               
               Cow position:chr17:19471528-19471712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):181, 88

               
               
               Conread position:237-482
               
               
               Cow position:chr17:7959425-7959178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):8, 92

               
               
               Conread position:237-524
               
               
               Cow position:chr17:7590212-7590504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:207
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):32, 12

               
               
               Conread position:237-536
               
               
               Cow position:chr17:31465015-31465306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):186, 82

               
               
               Conread position:237-613
               
               
               Cow position:chr17:25118131-25117754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:264
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):82, 15

               
               
               Conread position:237-633
               
               
               Cow position:chr17:3467995-3467615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 12

               
               
               Conread position:237-645
               
               
               Cow position:chr17:29355997-29356385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 73

               
               
               Conread position:237-661
               
               
               Cow position:chr17:3577775-3577356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 52

               
               
               Conread position:237-663
               
               
               Cow position:chr17:21599436-21599866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:297
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):65, 16

               
               
               Conread position:237-673
               
               
               Cow position:chr17:21292794-21293239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:315
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):73, 12

               
               
               Conread position:237-675
               
               
               Cow position:chr17:11618832-11618384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 179

               
               
               Conread position:237-675
               
               
               Cow position:chr17:25815840-25815412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:238-421
               
               
               Cow position:chr17:6761611-6761788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):177, 14

               
               
               Conread position:238-422
               
               
               Cow position:chr17:39964121-39963936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):80, 16

               
               
               Conread position:238-429
               
               
               Cow position:chr17:1081451-1081256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):88, 9

               
               
               Conread position:238-433
               
               
               Cow position:chr17:36467945-36468141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):88, 14

               
               
               Conread position:238-467
               
               
               Cow position:chr17:9509749-9509982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):14, 43

               
               
               Conread position:238-467
               
               
               Cow position:chr17:15355177-15354944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):88, 14

               
               
               Conread position:238-540
               
               
               Cow position:chr17:25126587-25126293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 11

               
               
               Conread position:238-576
               
               
               Cow position:chr17:14652541-14652881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):177, 14

               
               
               Conread position:238-634
               
               
               Cow position:chr17:1562547-1562929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):289, 76

               
               
               Conread position:238-637
               
               
               Cow position:chr17:17682670-17683056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):261, 81

               
               
               Conread position:238-673
               
               
               Cow position:chr17:20032665-20033110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:308
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):62, 14

               
               
               Conread position:238-673
               
               
               Cow position:chr17:20801057-20800622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:293
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):88, 14

               
               
               Conread position:238-673
               
               
               Cow position:chr17:33275515-33275940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 47

               
               
               Conread position:238-676
               
               
               Cow position:chr17:12109051-12108606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 9

               
               
               Conread position:239-394
               
               
               Cow position:chr17:7865068-7864912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):68, 91

               
               
               Conread position:239-412
               
               
               Cow position:chr17:12201035-12200863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):54, 82

               
               
               Conread position:239-416
               
               
               Cow position:chr17:3387962-3387783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):89, 113

               
               
               Conread position:239-417
               
               
               Cow position:chr17:21236768-21236587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):77, 93

               
               
               Conread position:239-422
               
               
               Cow position:chr17:21181697-21181510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):80, 121

               
               
               Conread position:239-422
               
               
               Cow position:chr17:26225271-26225086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:148
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:239-426
               
               
               Cow position:chr17:3364832-3364645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):127, 77

               
               
               Conread position:239-455
               
               
               Cow position:chr17:13414122-13414344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:239-467
               
               
               Cow position:chr17:26072516-26072748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):87, 14

               
               
               Conread position:239-479
               
               
               Cow position:chr17:25584487-25584243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:239-521
               
               
               Cow position:chr17:25800641-25800924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:214
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):72, 47

               
               
               Conread position:239-535
               
               
               Cow position:chr17:9770748-9770455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):89, 164

               
               
               Conread position:239-539
               
               
               Cow position:chr17:8597866-8598165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):87, 122

               
               
               Conread position:239-539
               
               
               Cow position:chr17:34790822-34791126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:219
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):175, 94

               
               
               Conread position:239-540
               
               
               Cow position:chr17:5012084-5011790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:218
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):92, 237

               
               
               Conread position:239-542
               
               
               Cow position:chr17:27730789-27730477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):99, 126

               
               
               Conread position:239-553
               
               
               Cow position:chr17:1469609-1469299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:240
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):185, 46

               
               
               Conread position:239-602
               
               
               Cow position:chr17:4299699-4300045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:261
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):150, 94

               
               
               Conread position:239-613
               
               
               Cow position:chr17:26233584-26233964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:252
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):98, 124

               
               
               Conread position:239-614
               
               
               Cow position:chr17:40673616-40673247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:263
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):87, 119

               
               
               Conread position:239-625
               
               
               Cow position:chr17:14004067-14003671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 41

               
               
               Conread position:239-640
               
               
               Cow position:chr17:7143100-7142703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 83

               
               
               Conread position:239-672
               
               
               Cow position:chr17:1035351-1035792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 199

               
               
               Conread position:239-672
               
               
               Cow position:chr17:20022271-20022710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 195

               
               
               Conread position:239-673
               
               
               Cow position:chr17:11839966-11839504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 252

               
               
               Conread position:239-673
               
               
               Cow position:chr17:15102646-15103082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 47

               
               
               Conread position:239-673
               
               
               Cow position:chr17:21738622-21739078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 293

               
               
               Conread position:239-673
               
               
               Cow position:chr17:24824489-24824058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 34

               
               
               Conread position:239-674
               
               
               Cow position:chr17:21959440-21959875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 205

               
               
               Conread position:239-675
               
               
               Cow position:chr17:14049967-14050389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:282
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):190, 58

               
               
               Conread position:239-675
               
               
               Cow position:chr17:15664919-15664473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 111

               
               
               Conread position:239-675
               
               
               Cow position:chr17:18490776-18490337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:294
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):123, 95

               
               
               Conread position:239-675
               
               
               Cow position:chr17:24004616-24004198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 124

               
               
               Conread position:239-675
               
               
               Cow position:chr17:25875638-25875216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 118

               
               
               Conread position:239-676
               
               
               Cow position:chr17:17180288-17179839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:321
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):79, 46

               
               
               Conread position:240-387
               
               
               Cow position:chr17:8809266-8809410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:240-392
               
               
               Cow position:chr17:17822330-17822180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):14, 89

               
               
               Conread position:240-410
               
               
               Cow position:chr17:30977258-30977092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:240-416
               
               
               Cow position:chr17:35457576-35457750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):156, 69

               
               
               Conread position:240-417
               
               
               Cow position:chr17:21363625-21363446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):84, 36

               
               
               Conread position:240-422
               
               
               Cow position:chr17:9077971-9078162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:240-422
               
               
               Cow position:chr17:10825718-10825541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:240-422
               
               
               Cow position:chr17:43323300-43323486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:240-426
               
               
               Cow position:chr17:24987444-24987263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):60, 45

               
               
               Conread position:240-459
               
               
               Cow position:chr17:18673796-18674008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):88, 13

               
               
               Conread position:240-468
               
               
               Cow position:chr17:20904865-20905087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):173, 45

               
               
               Conread position:240-468
               
               
               Cow position:chr17:40355503-40355270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):74, 92

               
               
               Conread position:240-473
               
               
               Cow position:chr17:22223956-22223706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):143, 88

               
               
               Conread position:240-479
               
               
               Cow position:chr17:37340789-37341037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):125, 205

               
               
               Conread position:240-481
               
               
               Cow position:chr17:42150630-42150392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):178, 85

               
               
               Conread position:240-482
               
               
               Cow position:chr17:43315048-43315289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):92, 42

               
               
               Conread position:240-496
               
               
               Cow position:chr17:3389076-3388807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):67, 185

               
               
               Conread position:240-508
               
               
               Cow position:chr17:33164578-33164846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):236, 85

               
               
               Conread position:240-511
               
               
               Cow position:chr17:40412821-40412554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):178, 87

               
               
               Conread position:240-528
               
               
               Cow position:chr17:3153326-3153619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:214
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):67, 147

               
               
               Conread position:240-528
               
               
               Cow position:chr17:9940937-9940634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):7, 39

               
               
               Conread position:240-531
               
               
               Cow position:chr17:40639189-40638898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:220
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):78, 36

               
               
               Conread position:240-539
               
               
               Cow position:chr17:21806207-21806509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 182

               
               
               Conread position:240-545
               
               
               Cow position:chr17:25511484-25511174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:226
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):174, 96

               
               
               Conread position:240-568
               
               
               Cow position:chr17:21489392-21489717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 34

               
               
               Conread position:240-574
               
               
               Cow position:chr17:11912263-11912596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 87

               
               
               Conread position:240-575
               
               
               Cow position:chr17:35573989-35573663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):25, 50

               
               
               Conread position:240-593
               
               
               Cow position:chr17:31856914-31856545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 112

               
               
               Conread position:240-602
               
               
               Cow position:chr17:36275579-36275215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 37

               
               
               Conread position:240-605
               
               
               Cow position:chr17:6318627-6318987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 9

               
               
               Conread position:240-605
               
               
               Cow position:chr17:9056457-9056826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:258
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):89, 69

               
               
               Conread position:240-637
               
               
               Cow position:chr17:28468366-28467978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 158

               
               
               Conread position:240-640
               
               
               Cow position:chr17:27058307-27058714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 104

               
               
               Conread position:240-666
               
               
               Cow position:chr17:32989715-32989305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 31

               
               
               Conread position:240-666
               
               
               Cow position:chr17:32993385-32993801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 31

               
               
               Conread position:240-666
               
               
               Cow position:chr17:33933506-33933924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 87

               
               
               Conread position:240-671
               
               
               Cow position:chr17:11280849-11281298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 18

               
               
               Conread position:240-671
               
               
               Cow position:chr17:11831876-11832331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 73

               
               
               Conread position:240-671
               
               
               Cow position:chr17:20234438-20234035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):287, 36

               
               
               Conread position:240-672
               
               
               Cow position:chr17:20157850-20157422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 169

               
               
               Conread position:240-673
               
               
               Cow position:chr17:9854224-9853792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 45

               
               
               Conread position:240-673
               
               
               Cow position:chr17:11215651-11216077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 45

               
               
               Conread position:240-673
               
               
               Cow position:chr17:15684745-15684311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 36

               
               
               Conread position:240-673
               
               
               Cow position:chr17:22564420-22563989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 45

               
               
               Conread position:240-673
               
               
               Cow position:chr17:23246428-23246018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):241, 27

               
               
               Conread position:240-673
               
               
               Cow position:chr17:24883328-24883758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 96

               
               
               Conread position:240-673
               
               
               Cow position:chr17:24974184-24973757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 10

               
               
               Conread position:240-673
               
               
               Cow position:chr17:25128112-25128543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 93

               
               
               Conread position:240-673
               
               
               Cow position:chr17:27429798-27429384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):238, 46

               
               
               Conread position:240-673
               
               
               Cow position:chr17:29714972-29715380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 35

               
               
               Conread position:240-673
               
               
               Cow position:chr17:30713588-30713159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 129

               
               
               Conread position:240-673
               
               
               Cow position:chr17:33288416-33288848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 94

               
               
               Conread position:240-674
               
               
               Cow position:chr17:20848770-20848335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 100

               
               
               Conread position:240-675
               
               
               Cow position:chr17:7810505-7810935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 203

               
               
               Conread position:240-675
               
               
               Cow position:chr17:34948879-34948444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 176

               
               
               Conread position:240-686
               
               
               Cow position:chr17:12325528-12325954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 67

               
               
               Conread position:241-363
               
               
               Cow position:chr17:21478474-21478596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:241-405
               
               
               Cow position:chr17:17782292-17782132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:241-409
               
               
               Cow position:chr17:15103501-15103667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:241-410
               
               
               Cow position:chr17:13297626-13297452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):75, 113

               
               
               Conread position:241-429
               
               
               Cow position:chr17:21677132-21676940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:241-430
               
               
               Cow position:chr17:44234486-44234299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):173, 80

               
               
               Conread position:241-453
               
               
               Cow position:chr17:946597-946384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):177, 93

               
               
               Conread position:241-481
               
               
               Cow position:chr17:9932070-9932301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):177, 69

               
               
               Conread position:241-491
               
               
               Cow position:chr17:22189672-22189426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):183, 73

               
               
               Conread position:241-528
               
               
               Cow position:chr17:20335887-20335617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):175, 48

               
               
               Conread position:241-528
               
               
               Cow position:chr17:21039796-21039516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 9

               
               
               Conread position:241-528
               
               
               Cow position:chr17:22051350-22051640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:215
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):173, 92

               
               
               Conread position:241-539
               
               
               Cow position:chr17:9824908-9824609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:217
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):173, 95

               
               
               Conread position:241-540
               
               
               Cow position:chr17:11994779-11995092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):84, 115

               
               
               Conread position:241-600
               
               
               Cow position:chr17:32349304-32348949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):286, 65

               
               
               Conread position:241-648
               
               
               Cow position:chr17:22032447-22032863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 204

               
               
               Conread position:241-663
               
               
               Cow position:chr17:8836710-8837133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 27

               
               
               Conread position:241-667
               
               
               Cow position:chr17:908980-908558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 92

               
               
               Conread position:241-670
               
               
               Cow position:chr17:29084408-29084012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:290
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):177, 33

               
               
               Conread position:241-673
               
               
               Cow position:chr17:20071862-20072269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 32

               
               
               Conread position:241-673
               
               
               Cow position:chr17:21003590-21004025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 96

               
               
               Conread position:241-673
               
               
               Cow position:chr17:26000361-25999922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 175

               
               
               Conread position:241-673
               
               
               Cow position:chr17:29292149-29292561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:297
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):243, 78

               
               
               Conread position:241-673
               
               
               Cow position:chr17:31480789-31481239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 247

               
               
               Conread position:241-673
               
               
               Cow position:chr17:33793393-33792988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 35

               
               
               Conread position:241-674
               
               
               Cow position:chr17:5422837-5423267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 65

               
               
               Conread position:241-674
               
               
               Cow position:chr17:17059659-17059244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 67

               
               
               Conread position:241-675
               
               
               Cow position:chr17:32027206-32027658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:242-385
               
               
               Cow position:chr17:24612885-24612747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:242-397
               
               
               Cow position:chr17:27606753-27606602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:242-410
               
               
               Cow position:chr17:6767017-6767189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:242-410
               
               
               Cow position:chr17:24898445-24898272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:242-411
               
               
               Cow position:chr17:21718757-21718926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-413
               
               
               Cow position:chr17:20836330-20836160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):154, 0

               
               
               Conread position:242-430
               
               
               Cow position:chr17:24895317-24895122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):65, 31

               
               
               Conread position:242-431
               
               
               Cow position:chr17:12215013-12215210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:242-436
               
               
               Cow position:chr17:11920922-11921122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:242-451
               
               
               Cow position:chr17:30501573-30501786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):135, 29

               
               
               Conread position:242-469
               
               
               Cow position:chr17:20929484-20929252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:242-475
               
               
               Cow position:chr17:27639788-27640043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):76, 217

               
               
               Conread position:242-476
               
               
               Cow position:chr17:26637616-26637855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:242-481
               
               
               Cow position:chr17:21466018-21466263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):81, 198

               
               
               Conread position:242-500
               
               
               Cow position:chr17:25473041-25473301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:194
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):172, 91

               
               
               Conread position:242-512
               
               
               Cow position:chr17:35149288-35149561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):86, 10

               
               
               Conread position:242-521
               
               
               Cow position:chr17:35051860-35051565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):44, 93

               
               
               Conread position:242-528
               
               
               Cow position:chr17:18934496-18934209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:211
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):172, 27

               
               
               Conread position:242-531
               
               
               Cow position:chr17:32332852-32333144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:215
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):86, 35

               
               
               Conread position:242-537
               
               
               Cow position:chr17:39606662-39606372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:220
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):171, 31

               
               
               Conread position:242-571
               
               
               Cow position:chr17:21744176-21743842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):86, 64

               
               
               Conread position:242-605
               
               
               Cow position:chr17:11962295-11962679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:267
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):84, 7

               
               
               Conread position:242-613
               
               
               Cow position:chr17:38362773-38363122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:260
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):193, 22

               
               
               Conread position:242-625
               
               
               Cow position:chr17:21325584-21325180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 205

               
               
               Conread position:242-631
               
               
               Cow position:chr17:12946120-12946517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:287
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):171, 10

               
               
               Conread position:242-643
               
               
               Cow position:chr17:4105752-4106150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 33

               
               
               Conread position:242-643
               
               
               Cow position:chr17:4121487-4121886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:277
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):52, 196

               
               
               Conread position:242-663
               
               
               Cow position:chr17:36791364-36790955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 31

               
               
               Conread position:242-667
               
               
               Cow position:chr17:25612327-25611905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 77

               
               
               Conread position:242-670
               
               
               Cow position:chr17:6423994-6423569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 92

               
               
               Conread position:242-670
               
               
               Cow position:chr17:40332019-40331574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 188

               
               
               Conread position:242-671
               
               
               Cow position:chr17:21972888-21973325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 7

               
               
               Conread position:242-673
               
               
               Cow position:chr17:12447162-12447592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:312
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):39, 66

               
               
               Conread position:242-673
               
               
               Cow position:chr17:13922722-13922281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 75

               
               
               Conread position:242-673
               
               
               Cow position:chr17:18720212-18720642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 42

               
               
               Conread position:242-673
               
               
               Cow position:chr17:32418877-32419312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 86

               
               
               Conread position:242-674
               
               
               Cow position:chr17:41289804-41290213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:304
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):177, 44

               
               
               Conread position:243-393
               
               
               Cow position:chr17:3541947-3541798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:243-475
               
               
               Cow position:chr17:27440416-27440181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 189

               
               
               Conread position:243-479
               
               
               Cow position:chr17:21788405-21788658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):63, 211

               
               
               Conread position:243-506
               
               
               Cow position:chr17:18766753-18767020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):54, 22

               
               
               Conread position:243-512
               
               
               Cow position:chr17:9950417-9950697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):64, 111

               
               
               Conread position:243-539
               
               
               Cow position:chr17:1025595-1025880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):146, 43

               
               
               Conread position:243-671
               
               
               Cow position:chr17:26231203-26230747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 10

               
               
               Conread position:243-673
               
               
               Cow position:chr17:22775609-22775194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:297
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):92, 38

               
               
               Conread position:243-687
               
               
               Cow position:chr17:40312938-40312513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 42

               
               
               Conread position:245-377
               
               
               Cow position:chr17:13478367-13478491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:245-407
               
               
               Cow position:chr17:24111366-24111527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):84, 65

               
               
               Conread position:245-421
               
               
               Cow position:chr17:7711673-7711497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):173, 72

               
               
               Conread position:245-522
               
               
               Cow position:chr17:26448780-26448500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):75, 180

               
               
               Conread position:245-535
               
               
               Cow position:chr17:12510748-12511028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):173, 38

               
               
               Conread position:245-605
               
               
               Cow position:chr17:31037140-31037510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 20

               
               
               Conread position:245-671
               
               
               Cow position:chr17:11296876-11296443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 40

               
               
               Conread position:245-673
               
               
               Cow position:chr17:5768131-5767720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 29

               
               
               Conread position:245-673
               
               
               Cow position:chr17:7132187-7132649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 190

               
               
               Conread position:245-673
               
               
               Cow position:chr17:20992801-20993233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 178

               
               
               Conread position:245-673
               
               
               Cow position:chr17:40741891-40741453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 112

               
               
               Conread position:245-674
               
               
               Cow position:chr17:25901445-25901003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 198

               
               
               Conread position:246-413
               
               
               Cow position:chr17:19543996-19544163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):54, 40

               
               
               Conread position:246-422
               
               
               Cow position:chr17:6787176-6786995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):54, 39

               
               
               Conread position:246-468
               
               
               Cow position:chr17:17035182-17034961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):166, 40

               
               
               Conread position:246-526
               
               
               Cow position:chr17:37815954-37816236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):44, 28

               
               
               Conread position:246-600
               
               
               Cow position:chr17:20884761-20884398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 27

               
               
               Conread position:246-672
               
               
               Cow position:chr17:21114719-21115141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 87

               
               
               Conread position:247-539
               
               
               Cow position:chr17:36864858-36864571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 63

               
               
               Conread position:249-446
               
               
               Cow position:chr17:10414726-10414532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):180, 68

               
               
               Conread position:249-469
               
               
               Cow position:chr17:4833282-4833517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):58, 20

               
               
               Conread position:249-474
               
               
               Cow position:chr17:40276969-40276746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):80, 25

               
               
               Conread position:249-505
               
               
               Cow position:chr17:8815420-8815164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:182
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):166, 37

               
               
               Conread position:249-506
               
               
               Cow position:chr17:27303747-27303985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:249-538
               
               
               Cow position:chr17:5372299-5372588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:215
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):168, 58

               
               
               Conread position:249-672
               
               
               Cow position:chr17:5000368-5000769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:288
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):169, 81

               
               
               Conread position:249-673
               
               
               Cow position:chr17:11362409-11361989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:304
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):77, 159

               
               
               Conread position:249-673
               
               
               Cow position:chr17:40772063-40771636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):218, 127

               
               
               Conread position:249-677
               
               
               Cow position:chr17:6566717-6566272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 190

               
               
               Conread position:250-405
               
               
               Cow position:chr17:15333451-15333602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:250-498
               
               
               Cow position:chr17:24163266-24163018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):222, 47

               
               
               Conread position:250-505
               
               
               Cow position:chr17:40383974-40384230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):57, 140

               
               
               Conread position:250-605
               
               
               Cow position:chr17:5143940-5144297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:263
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):167, 35

               
               
               Conread position:250-613
               
               
               Cow position:chr17:32138184-32138550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 193

               
               
               Conread position:250-651
               
               
               Cow position:chr17:1634261-1634654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 83

               
               
               Conread position:250-671
               
               
               Cow position:chr17:2034731-2034353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:297
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):216, 35

               
               
               Conread position:251-506
               
               
               Cow position:chr17:29995204-29995465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):82, 185

               
               
               Conread position:251-605
               
               
               Cow position:chr17:33271439-33271817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:256
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):68, 177

               
               
               Conread position:251-663
               
               
               Cow position:chr17:14033410-14033828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 85

               
               
               Conread position:251-673
               
               
               Cow position:chr17:33053085-33052669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:288
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):77, 30

               
               
               Conread position:251-675
               
               
               Cow position:chr17:38615194-38614760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 113

               
               
               Conread position:252-394
               
               
               Cow position:chr17:10630751-10630895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:252-441
               
               
               Cow position:chr17:20359346-20359153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):66, 171

               
               
               Conread position:252-673
               
               
               Cow position:chr17:29472687-29472281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 24

               
               
               Conread position:253-539
               
               
               Cow position:chr17:29026304-29026008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):75, 186

               
               
               Conread position:253-665
               
               
               Cow position:chr17:36454549-36454950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:282
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):66, 112

               
               
               Conread position:253-673
               
               
               Cow position:chr17:5514986-5514565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 112

               
               
               Conread position:253-673
               
               
               Cow position:chr17:30529318-30529730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 71

               
               
               Conread position:254-391
               
               
               Cow position:chr17:21910303-21910441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:254-405
               
               
               Cow position:chr17:38736659-38736515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:254-412
               
               
               Cow position:chr17:24767060-24767218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:254-426
               
               
               Cow position:chr17:25348595-25348421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):25, 12

               
               
               Conread position:254-465
               
               
               Cow position:chr17:6005028-6004818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):62, 99

               
               
               Conread position:254-466
               
               
               Cow position:chr17:8986373-8986592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:254-468
               
               
               Cow position:chr17:11224338-11224116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):55, 150

               
               
               Conread position:254-475
               
               
               Cow position:chr17:25095714-25095499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):74, 165

               
               
               Conread position:254-522
               
               
               Cow position:chr17:26789643-26789377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:202
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):164, 31

               
               
               Conread position:254-591
               
               
               Cow position:chr17:37699113-37699472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:246
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):69, 19

               
               
               Conread position:254-670
               
               
               Cow position:chr17:24773904-24773492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 66

               
               
               Conread position:257-421
               
               
               Cow position:chr17:20881590-20881749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):162, 16

               
               
               Conread position:257-430
               
               
               Cow position:chr17:5027239-5027411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):157, 76

               
               
               Conread position:257-434
               
               
               Cow position:chr17:21335326-21335515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):50, 183

               
               
               Conread position:257-471
               
               
               Cow position:chr17:29245659-29245452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):156, 28

               
               
               Conread position:257-476
               
               
               Cow position:chr17:24862680-24862463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):158, 62

               
               
               Conread position:257-521
               
               
               Cow position:chr17:950200-949933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):60, 19

               
               
               Conread position:257-643
               
               
               Cow position:chr17:12306175-12306560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 62

               
               
               Conread position:257-651
               
               
               Cow position:chr17:18419910-18419501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:269
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):69, 97

               
               
               Conread position:257-667
               
               
               Cow position:chr17:12536249-12536656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 63

               
               
               Conread position:257-673
               
               
               Cow position:chr17:23100997-23101405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 63

               
               
               Conread position:257-673
               
               
               Cow position:chr17:36330742-36331160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 50

               
               
               Conread position:257-673
               
               
               Cow position:chr17:39771627-39771202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:275
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):44, 97

               
               
               Conread position:258-479
               
               
               Cow position:chr17:5012844-5013073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):37, 196

               
               
               Conread position:258-549
               
               
               Cow position:chr17:10431740-10432045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:232
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):49, 191

               
               
               Conread position:258-552
               
               
               Cow position:chr17:5349899-5350195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):48, 100

               
               
               Conread position:258-588
               
               
               Cow position:chr17:11215009-11215342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 21

               
               
               Conread position:258-682
               
               
               Cow position:chr17:14025683-14026118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 26

               
               
               Conread position:259-503
               
               
               Cow position:chr17:26574999-26575255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):75, 183

               
               
               Conread position:259-605
               
               
               Cow position:chr17:1114121-1113755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:253
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):42, 175

               
               
               Conread position:259-671
               
               
               Cow position:chr17:18860520-18860911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 17

               
               
               Conread position:260-504
               
               
               Cow position:chr17:41429366-41429616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):148, 73

               
               
               Conread position:261-583
               
               
               Cow position:chr17:40852189-40851875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:230
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):16, 46

               
               
               Conread position:262-620
               
               
               Cow position:chr17:24752101-24752459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:263
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):64, 74

               
               
               Conread position:262-645
               
               
               Cow position:chr17:30359676-30359312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:254
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):195, 71

               
               
               Conread position:262-673
               
               
               Cow position:chr17:2810853-2810427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:292
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):66, 5

               
               
               Conread position:265-625
               
               
               Cow position:chr17:6329329-6328962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 59

               
               
               Conread position:265-656
               
               
               Cow position:chr17:24149402-24149000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:270
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):73, 10

               
               
               Conread position:265-671
               
               
               Cow position:chr17:18473380-18472984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 83

               
               
               Conread position:267-675
               
               
               Cow position:chr17:25189505-25189083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 18

               
               
               Conread position:269-464
               
               
               Cow position:chr17:37129425-37129215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):32, 11

               
               
               Conread position:270-675
               
               
               Cow position:chr17:34078896-34079294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:283
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):56, 189

               
               
               Conread position:276-570
               
               
               Cow position:chr17:2275672-2275385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):12, 47

               
               
               Conread position:279-674
               
               
               Cow position:chr17:25097656-25097267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):248, 54

               
               
               Conread position:279-674
               
               
               Cow position:chr17:30665475-30665077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 6

               
               
               Conread position:282-672
               
               
               Cow position:chr17:18108886-18109279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 67

               
               
               Conread position:286-673
               
               
               Cow position:chr17:1492950-1493349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 148

               
               
               Conread position:287-673
               
               
               Cow position:chr17:18495324-18495704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:278
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):42, 130

               
               
               Conread position:296-565
               
               
               Cow position:chr17:27202861-27203134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:213
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):30, 41

               
               
               Conread position:301-672
               
               
               Cow position:chr17:1060865-1061255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 235

               
               
               Conread position:302-671
               
               
               Cow position:chr17:9746690-9746326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 15

               
               
               Conread position:303-652
               
               
               Cow position:chr17:20990012-20990367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 30

               
               
               Conread position:304-671
               
               
               Cow position:chr17:17060506-17060874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:268
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):120, 29

               
               
               Conread position:307-576
               
               
               Cow position:chr17:12880772-12880495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):19, 72

               
               
               Conread position:308-549
               
               
               Cow position:chr17:22056855-22057091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):106, 25

               
               
               Conread position:308-673
               
               
               Cow position:chr17:8079483-8079123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 16

               
               
               Conread position:310-442
               
               
               Cow position:chr17:21268469-21268335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):63, 23

               
               
               Conread position:310-451
               
               
               Cow position:chr17:9713171-9713313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):104, 23

               
               
               Conread position:310-453
               
               
               Cow position:chr17:5743120-5743264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):108, 23

               
               
               Conread position:310-456
               
               
               Cow position:chr17:13236171-13236316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):50, 24

               
               
               Conread position:310-460
               
               
               Cow position:chr17:22074327-22074478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):108, 23

               
               
               Conread position:310-465
               
               
               Cow position:chr17:29075912-29076068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):104, 39

               
               
               Conread position:310-468
               
               
               Cow position:chr17:11306383-11306221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):16, 127

               
               
               Conread position:310-529
               
               
               Cow position:chr17:22016918-22017136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):108, 27

               
               
               Conread position:310-565
               
               
               Cow position:chr17:23516772-23517032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 24

               
               
               Conread position:310-566
               
               
               Cow position:chr17:21922462-21922713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):105, 114

               
               
               Conread position:310-589
               
               
               Cow position:chr17:35338746-35339029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:209
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):30, 128

               
               
               Conread position:310-656
               
               
               Cow position:chr17:32273516-32273861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 23

               
               
               Conread position:310-667
               
               
               Cow position:chr17:8544474-8544118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 22

               
               
               Conread position:310-673
               
               
               Cow position:chr17:9911928-9911569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 23

               
               
               Conread position:310-673
               
               
               Cow position:chr17:24554168-24553810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 125

               
               
               Conread position:310-686
               
               
               Cow position:chr17:15299709-15300078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:257
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):172, 57

               
               
               Conread position:310-686
               
               
               Cow position:chr17:27048327-27047955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 24

               
               
               Conread position:310-697
               
               
               Cow position:chr17:15340579-15340946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):16, 157

               
               
               Conread position:311-529
               
               
               Cow position:chr17:26807066-26806847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):108, 23

               
               
               Conread position:311-599
               
               
               Cow position:chr17:6848966-6848681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:220
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):15, 97

               
               
               Conread position:311-659
               
               
               Cow position:chr17:29157586-29157238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:248
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):94, 22

               
               
               Conread position:311-662
               
               
               Cow position:chr17:20126767-20126431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:251
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):216, 48

               
               
               Conread position:311-673
               
               
               Cow position:chr17:9117812-9117449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 23

               
               
               Conread position:311-674
               
               
               Cow position:chr17:40288831-40289199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:261
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):104, 32

               
               
               Conread position:312-673
               
               
               Cow position:chr17:21755267-21755635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:263
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):98, 15

               
               
               Conread position:313-467
               
               
               Cow position:chr17:3097488-3097644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):104, 20

               
               
               Conread position:313-671
               
               
               Cow position:chr17:38833211-38832850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 20

               
               
               Conread position:313-672
               
               
               Cow position:chr17:1410069-1410436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 32

               
               
               Conread position:313-673
               
               
               Cow position:chr17:26765191-26764819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 20

               
               
               Conread position:314-539
               
               
               Cow position:chr17:39715323-39715098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):110, 56

               
               
               Conread position:314-673
               
               
               Cow position:chr17:18592610-18592246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 121

               
               
               Conread position:316-658
               
               
               Cow position:chr17:5900534-5900199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):100, 17

               
               
               Conread position:316-674
               
               
               Cow position:chr17:5895769-5896106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:257
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):220, 17

               
               
               Conread position:317-474
               
               
               Cow position:chr17:5720035-5719877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):102, 16

               
               
               Conread position:318-456
               
               
               Cow position:chr17:20392313-20392175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):17, 120

               
               
               Conread position:318-535
               
               
               Cow position:chr17:26730446-26730664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):8, 118

               
               
               Conread position:318-673
               
               
               Cow position:chr17:43141546-43141910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:265
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):27, 15

               
               
               Conread position:318-681
               
               
               Cow position:chr17:12591338-12590963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 122

               
               
               Conread position:319-663
               
               
               Cow position:chr17:552805-553155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:249
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):38, 18

               
               
               Conread position:319-674
               
               
               Cow position:chr17:39736338-39735990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:249
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):7, 118

               
               
               Conread position:320-535
               
               
               Cow position:chr17:16158650-16158435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):96, 14

               
               
               Conread position:320-557
               
               
               Cow position:chr17:38263328-38263568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):99, 118

               
               
               Conread position:320-650
               
               
               Cow position:chr17:979008-979324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:241
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):207, 12

               
               
               Conread position:320-672
               
               
               Cow position:chr17:924034-923685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 33

               
               
               Conread position:321-473
               
               
               Cow position:chr17:30213046-30212897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:322-492
               
               
               Cow position:chr17:34836330-34836157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):93, 11

               
               
               Conread position:322-592
               
               
               Cow position:chr17:39857544-39857276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):102, 11

               
               
               Conread position:322-674
               
               
               Cow position:chr17:21243631-21243982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 11

               
               
               Conread position:323-456
               
               
               Cow position:chr17:11478928-11478793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):91, 112

               
               
               Conread position:323-671
               
               
               Cow position:chr17:22806385-22806733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 11

               
               
               Conread position:325-483
               
               
               Cow position:chr17:35557005-35556851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:325-586
               
               
               Cow position:chr17:21757985-21758257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):88, 9

               
               
               Conread position:325-670
               
               
               Cow position:chr17:25032325-25032663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 110

               
               
               Conread position:325-672
               
               
               Cow position:chr17:37479846-37480186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:241
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):202, 9

               
               
               Conread position:325-673
               
               
               Cow position:chr17:8690296-8690634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 12

               
               
               Conread position:326-528
               
               
               Cow position:chr17:40406600-40406396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):92, 109

               
               
               Conread position:327-674
               
               
               Cow position:chr17:5688218-5688543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:239
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):135, 61

               
               
               Conread position:327-686
               
               
               Cow position:chr17:30718263-30718627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 111

               
               
               Conread position:328-513
               
               
               Cow position:chr17:28814339-28814533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):90, 107

               
               
               Conread position:328-673
               
               
               Cow position:chr17:41030091-41029759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):199, 16

               
               
               Conread position:329-674
               
               
               Cow position:chr17:24580142-24580495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 53

               
               
               Conread position:330-691
               
               
               Cow position:chr17:29363208-29363576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:255
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):17, 106

               
               
               Conread position:331-673
               
               
               Cow position:chr17:9565451-9565115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:249
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):131, 18

               
               
               Conread position:331-673
               
               
               Cow position:chr17:30539119-30539441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 39

               
               
               Conread position:332-595
               
               
               Cow position:chr17:33657919-33658190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):85, 32

               
               
               Conread position:337-447
               
               
               Cow position:chr17:39485907-39485795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):74, 98

               
               
               Conread position:337-474
               
               
               Cow position:chr17:1350595-1350456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:337-592
               
               
               Cow position:chr17:1040889-1040629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):80, 14

               
               
               Conread position:337-670
               
               
               Cow position:chr17:5006343-5006682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 80

               
               
               Conread position:338-590
               
               
               Cow position:chr17:25502254-25501995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 76

               
               
               Conread position:340-673
               
               
               Cow position:chr17:5224541-5224209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 88

               
               
               Conread position:341-500
               
               
               Cow position:chr17:22048647-22048812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):73, 94

               
               
               Conread position:344-572
               
               
               Cow position:chr17:11368712-11368947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):70, 36

               
               
               Conread position:344-673
               
               
               Cow position:chr17:3503719-3503392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 90

               
               
               Conread position:344-673
               
               
               Cow position:chr17:21628615-21628288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:344-677
               
               
               Cow position:chr17:14761984-14762319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:242
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):75, 94

               
               
               Conread position:346-475
               
               
               Cow position:chr17:7577733-7577602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):69, 78

               
               
               Conread position:348-589
               
               
               Cow position:chr17:23798414-23798168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):67, 8

               
               
               Conread position:349-492
               
               
               Cow position:chr17:7851220-7851074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):70, 82

               
               
               Conread position:352-670
               
               
               Cow position:chr17:38647191-38646873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 86

               
               
               Conread position:352-673
               
               
               Cow position:chr17:31230993-31231308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 45

               
               
               Conread position:353-673
               
               
               Cow position:chr17:3782172-3781851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 33

               
               
               Conread position:355-539
               
               
               Cow position:chr17:36094130-36093943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):61, 69

               
               
               Conread position:363-671
               
               
               Cow position:chr17:32651734-32651424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):69, 31

               
               
               Conread position:367-600
               
               
               Cow position:chr17:33410894-33411147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):47, 166

               
               
               Conread position:367-675
               
               
               Cow position:chr17:24490656-24490325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):63, 168

               
               
               Conread position:368-673
               
               
               Cow position:chr17:28540142-28539843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 49

               
               
               Conread position:373-605
               
               
               Cow position:chr17:14060665-14060906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):64, 57

               
               
               Conread position:381-591
               
               
               Cow position:chr17:7654351-7654568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):38, 61

               
               
               Conread position:381-674
               
               
               Cow position:chr17:12058992-12059286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 56

               
               
               Conread position:382-674
               
               
               Cow position:chr17:34316617-34316904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:218
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):25, 34

               
               
               Conread position:395-684
               
               
               Cow position:chr17:15333623-15333916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 43

               
               
               Conread position:401-675
               
               
               Cow position:chr17:27679152-27679440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 104

               
               
               Conread position:401-697
               
               
               Cow position:chr17:33998974-33999261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):126, 14

               
               
               Conread position:405-671
               
               
               Cow position:chr17:24550250-24549977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):61, 10

               
               
               Conread position:408-673
               
               
               Cow position:chr17:966672-966933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):13, 64

               
               
               Conread position:412-673
               
               
               Cow position:chr17:21323343-21323103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):54, 24

               
               
               Conread position:415-634
               
               
               Cow position:chr17:10491592-10491368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):7, 23

               
               
               Conread position:415-674
               
               
               Cow position:chr17:20912954-20912702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):20, 82

               
               
               Conread position:416-675
               
               
               Cow position:chr17:20835644-20835397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:203
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):111, 19

               
               
               Conread position:417-671
               
               
               Cow position:chr17:13143626-13143882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):67, 19

               
               
               Conread position:417-671
               
               
               Cow position:chr17:24761166-24761418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):64, 18

               
               
               Conread position:417-672
               
               
               Cow position:chr17:3471481-3471228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):67, 19

               
               
               Conread position:417-673
               
               
               Cow position:chr17:27765336-27765087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):8, 19

               
               
               Conread position:418-645
               
               
               Cow position:chr17:10510596-10510828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):66, 17

               
               
               Conread position:418-668
               
               
               Cow position:chr17:33926059-33926314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):13, 95

               
               
               Conread position:419-609
               
               
               Cow position:chr17:21910861-21911054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):118, 17

               
               
               Conread position:421-640
               
               
               Cow position:chr17:1353455-1353235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):106, 15

               
               
               Conread position:429-674
               
               
               Cow position:chr17:26224563-26224322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:183
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):6, 89

               
               
               Conread position:434-619
               
               
               Cow position:chr17:5830100-5830277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):121, 36

               
               
               Conread position:434-670
               
               
               Cow position:chr17:21031833-21031594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):37, 91

               
               
               Conread position:434-675
               
               
               Cow position:chr17:1295525-1295767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 49

               
               
               Conread position:435-590
               
               
               Cow position:chr17:25122363-25122523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):88, 56

               
               
               Conread position:436-596
               
               
               Cow position:chr17:30734250-30734413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):104, 13

               
               
               Conread position:436-605
               
               
               Cow position:chr17:11921230-11921412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):46, 91

               
               
               Conread position:436-673
               
               
               Cow position:chr17:242682-242442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):47, 35

               
               
               Conread position:436-674
               
               
               Cow position:chr17:21312765-21313000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:189
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):48, 35

               
               
               Conread position:436-677
               
               
               Cow position:chr17:35311471-35311222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:190
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):27, 85

               
               
               Conread position:439-631
               
               
               Cow position:chr17:5381953-5382138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):88, 44

               
               
               Conread position:440-673
               
               
               Cow position:chr17:42347184-42347415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):44, 60

               
               
               Conread position:441-673
               
               
               Cow position:chr17:25141491-25141266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):34, 85

               
               
               Conread position:442-586
               
               
               Cow position:chr17:484636-484484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:442-674
               
               
               Cow position:chr17:5246932-5246700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:181
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):41, 27

               
               
               Conread position:445-672
               
               
               Cow position:chr17:11056333-11056567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):39, 78

               
               
               Conread position:460-675
               
               
               Cow position:chr17:5041659-5041872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):21, 63

               
               
               Conread position:483-674
               
               
               Cow position:chr17:3843476-3843291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:484-676
               
               
               Cow position:chr17:23337021-23337210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):43, 36

               
               
               Conread position:162-534
               
               
               Cow position:chr18:3085254-3085643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:259
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):51, 43

               
               
               Conread position:163-591
               
               
               Cow position:chr18:46276050-46276498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 18

               
               
               Conread position:164-528
               
               
               Cow position:chr18:29474984-29474619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:255
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):65, 123

               
               
               Conread position:225-675
               
               
               Cow position:chr18:39662968-39662516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 137

               
               
               Conread position:227-667
               
               
               Cow position:chr18:20270830-20271281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 170

               
               
               Conread position:228-436
               
               
               Cow position:chr18:9818943-9818741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):192, 97

               
               
               Conread position:233-385
               
               
               Cow position:chr18:37690325-37690173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):95, 19

               
               
               Conread position:233-517
               
               
               Cow position:chr18:42212620-42212333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):14, 39

               
               
               Conread position:234-377
               
               
               Cow position:chr18:18520626-18520770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):9, 101

               
               
               Conread position:234-392
               
               
               Cow position:chr18:34389208-34389367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):84, 18

               
               
               Conread position:234-400
               
               
               Cow position:chr18:17007311-17007472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:234-414
               
               
               Cow position:chr18:47419966-47419793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:234-420
               
               
               Cow position:chr18:35795047-35795235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:234-422
               
               
               Cow position:chr18:237940-238131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):94, 18

               
               
               Conread position:234-422
               
               
               Cow position:chr18:2108422-2108232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):83, 51

               
               
               Conread position:234-439
               
               
               Cow position:chr18:41703007-41702804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:163
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):81, 15

               
               
               Conread position:234-443
               
               
               Cow position:chr18:48407906-48407702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):180, 40

               
               
               Conread position:234-455
               
               
               Cow position:chr18:19796746-19796972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):92, 12

               
               
               Conread position:234-466
               
               
               Cow position:chr18:52649164-52649407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):10, 120

               
               
               Conread position:234-469
               
               
               Cow position:chr18:42427789-42427558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):181, 15

               
               
               Conread position:234-469
               
               
               Cow position:chr18:47824600-47824831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):182, 100

               
               
               Conread position:234-472
               
               
               Cow position:chr18:32189344-32189573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):180, 15

               
               
               Conread position:234-475
               
               
               Cow position:chr18:16659254-16659500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):81, 189

               
               
               Conread position:234-485
               
               
               Cow position:chr18:135486-135733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):181, 83

               
               
               Conread position:234-502
               
               
               Cow position:chr18:3164340-3164610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):66, 19

               
               
               Conread position:234-502
               
               
               Cow position:chr18:22568894-22569164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:200
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):179, 55

               
               
               Conread position:234-510
               
               
               Cow position:chr18:49015286-49015023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):80, 12

               
               
               Conread position:234-511
               
               
               Cow position:chr18:35367035-35367292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):126, 12

               
               
               Conread position:234-521
               
               
               Cow position:chr18:49038627-49038344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 19

               
               
               Conread position:234-535
               
               
               Cow position:chr18:25601152-25601446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):93, 19

               
               
               Conread position:234-539
               
               
               Cow position:chr18:49841458-49841145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:229
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):20, 40

               
               
               Conread position:234-544
               
               
               Cow position:chr18:34219735-34220061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):45, 12

               
               
               Conread position:234-574
               
               
               Cow position:chr18:50974116-50974468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):57, 12

               
               
               Conread position:234-579
               
               
               Cow position:chr18:55747862-55747506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:248
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):76, 104

               
               
               Conread position:234-620
               
               
               Cow position:chr18:23652939-23653337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):27, 67

               
               
               Conread position:234-667
               
               
               Cow position:chr18:4489727-4490135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:306
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):81, 187

               
               
               Conread position:234-670
               
               
               Cow position:chr18:29080967-29080562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:299
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):229, 38

               
               
               Conread position:234-672
               
               
               Cow position:chr18:49100211-49100634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 83

               
               
               Conread position:234-673
               
               
               Cow position:chr18:32873769-32873316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:304
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):19, 27

               
               
               Conread position:234-673
               
               
               Cow position:chr18:37002810-37002362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 15

               
               
               Conread position:234-673
               
               
               Cow position:chr18:38985865-38985420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 76

               
               
               Conread position:235-405
               
               
               Cow position:chr18:44514262-44514089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):91, 17

               
               
               Conread position:235-425
               
               
               Cow position:chr18:21751552-21751360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):91, 14

               
               
               Conread position:235-447
               
               
               Cow position:chr18:37187820-37188038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):10, 204

               
               
               Conread position:235-538
               
               
               Cow position:chr18:31711403-31711698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):8, 73

               
               
               Conread position:235-539
               
               
               Cow position:chr18:42290158-42290456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):7, 53

               
               
               Conread position:235-648
               
               
               Cow position:chr18:17390815-17391216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 163

               
               
               Conread position:235-667
               
               
               Cow position:chr18:12113195-12113628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:306
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):183, 70

               
               
               Conread position:235-673
               
               
               Cow position:chr18:55120040-55119607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 41

               
               
               Conread position:236-417
               
               
               Cow position:chr18:12143779-12143959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):97, 74

               
               
               Conread position:236-422
               
               
               Cow position:chr18:24022783-24022603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):179, 11

               
               
               Conread position:236-468
               
               
               Cow position:chr18:46072642-46072401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):36, 11

               
               
               Conread position:236-473
               
               
               Cow position:chr18:6470263-6470028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):178, 13

               
               
               Conread position:236-476
               
               
               Cow position:chr18:32600225-32599982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):50, 16

               
               
               Conread position:236-510
               
               
               Cow position:chr18:1931287-1931559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:200
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):229, 92

               
               
               Conread position:236-529
               
               
               Cow position:chr18:50359496-50359209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:217
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):182, 13

               
               
               Conread position:236-539
               
               
               Cow position:chr18:54130169-54130467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):7, 52

               
               
               Conread position:236-662
               
               
               Cow position:chr18:29648951-29648525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 13

               
               
               Conread position:236-673
               
               
               Cow position:chr18:3158408-3158869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 233

               
               
               Conread position:236-674
               
               
               Cow position:chr18:40759392-40758947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 13

               
               
               Conread position:236-675
               
               
               Cow position:chr18:23446888-23447351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 19

               
               
               Conread position:237-387
               
               
               Cow position:chr18:33364381-33364233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):110, 87

               
               
               Conread position:237-408
               
               
               Cow position:chr18:47096592-47096429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:237-423
               
               
               Cow position:chr18:44205924-44206100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):174, 12

               
               
               Conread position:237-424
               
               
               Cow position:chr18:9596347-9596166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):179, 13

               
               
               Conread position:237-427
               
               
               Cow position:chr18:697049-697236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):91, 15

               
               
               Conread position:237-459
               
               
               Cow position:chr18:14172043-14172260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:237-466
               
               
               Cow position:chr18:48112795-48113024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):82, 183

               
               
               Conread position:237-468
               
               
               Cow position:chr18:10051917-10051686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):91, 37

               
               
               Conread position:237-518
               
               
               Cow position:chr18:5078616-5078888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):171, 48

               
               
               Conread position:237-582
               
               
               Cow position:chr18:28930470-28930810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):177, 73

               
               
               Conread position:237-590
               
               
               Cow position:chr18:39811413-39811760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):26, 16

               
               
               Conread position:237-605
               
               
               Cow position:chr18:39623974-39623595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 12

               
               
               Conread position:237-637
               
               
               Cow position:chr18:56155686-56155269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:281
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):89, 10

               
               
               Conread position:237-671
               
               
               Cow position:chr18:9089862-9089437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 48

               
               
               Conread position:237-673
               
               
               Cow position:chr18:3267612-3267202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:271
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:237-673
               
               
               Cow position:chr18:51405745-51406170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 37

               
               
               Conread position:237-673
               
               
               Cow position:chr18:56181286-56181722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 90

               
               
               Conread position:237-677
               
               
               Cow position:chr18:28657748-28658186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 30

               
               
               Conread position:238-378
               
               
               Cow position:chr18:17756772-17756915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):83, 11

               
               
               Conread position:238-410
               
               
               Cow position:chr18:47175209-47175383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):62, 15

               
               
               Conread position:238-415
               
               
               Cow position:chr18:36098527-36098358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):168, 15

               
               
               Conread position:238-422
               
               
               Cow position:chr18:2144739-2144556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):180, 14

               
               
               Conread position:238-422
               
               
               Cow position:chr18:21187471-21187291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):10, 97

               
               
               Conread position:238-422
               
               
               Cow position:chr18:49970482-49970668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):90, 15

               
               
               Conread position:238-429
               
               
               Cow position:chr18:47801926-47802114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):170, 71

               
               
               Conread position:238-468
               
               
               Cow position:chr18:56183329-56183565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):10, 182

               
               
               Conread position:238-472
               
               
               Cow position:chr18:38211328-38211096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):88, 14

               
               
               Conread position:238-493
               
               
               Cow position:chr18:24719479-24719225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:197
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):20, 73

               
               
               Conread position:238-505
               
               
               Cow position:chr18:22180611-22180884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):147, 81

               
               
               Conread position:238-539
               
               
               Cow position:chr18:1571069-1571370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 83

               
               
               Conread position:238-539
               
               
               Cow position:chr18:23623460-23623766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):88, 125

               
               
               Conread position:238-539
               
               
               Cow position:chr18:51643200-51643499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:226
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):177, 14

               
               
               Conread position:238-549
               
               
               Cow position:chr18:2146423-2146729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:232
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):176, 12

               
               
               Conread position:238-550
               
               
               Cow position:chr18:4264225-4264534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:224
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):10, 70

               
               
               Conread position:238-559
               
               
               Cow position:chr18:20462537-20462851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):139, 92

               
               
               Conread position:238-565
               
               
               Cow position:chr18:51515094-51515430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):10, 88

               
               
               Conread position:238-567
               
               
               Cow position:chr18:50205626-50205957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:231
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):10, 88

               
               
               Conread position:238-605
               
               
               Cow position:chr18:7109302-7108922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 110

               
               
               Conread position:238-611
               
               
               Cow position:chr18:23615706-23616090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):75, 11

               
               
               Conread position:238-637
               
               
               Cow position:chr18:42479409-42479823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 98

               
               
               Conread position:238-659
               
               
               Cow position:chr18:42431442-42431861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:292
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):10, 51

               
               
               Conread position:238-673
               
               
               Cow position:chr18:14586310-14586743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 14

               
               
               Conread position:238-673
               
               
               Cow position:chr18:16227730-16227294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:293
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):88, 15

               
               
               Conread position:238-673
               
               
               Cow position:chr18:22789920-22790342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 84

               
               
               Conread position:238-673
               
               
               Cow position:chr18:29372039-29371602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 14

               
               
               Conread position:238-675
               
               
               Cow position:chr18:44137664-44137206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:289
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):96, 119

               
               
               Conread position:238-687
               
               
               Cow position:chr18:31724708-31725169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:328
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):62, 15

               
               
               Conread position:239-417
               
               
               Cow position:chr18:56463559-56463739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):89, 144

               
               
               Conread position:239-422
               
               
               Cow position:chr18:24946249-24946073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:239-422
               
               
               Cow position:chr18:34490450-34490265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):155, 0

               
               
               Conread position:239-448
               
               
               Cow position:chr18:23649095-23648880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):61, 46

               
               
               Conread position:239-451
               
               
               Cow position:chr18:2793807-2794016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):179, 88

               
               
               Conread position:239-451
               
               
               Cow position:chr18:21969632-21969848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):61, 46

               
               
               Conread position:239-468
               
               
               Cow position:chr18:19868089-19868320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):68, 122

               
               
               Conread position:239-476
               
               
               Cow position:chr18:44909221-44908983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):191, 86

               
               
               Conread position:239-476
               
               
               Cow position:chr18:52251685-52251925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:185
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):89, 207

               
               
               Conread position:239-521
               
               
               Cow position:chr18:12584675-12584959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:221
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):85, 46

               
               
               Conread position:239-528
               
               
               Cow position:chr18:4555995-4556287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:213
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):68, 182

               
               
               Conread position:239-539
               
               
               Cow position:chr18:55140387-55140692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):71, 114

               
               
               Conread position:239-540
               
               
               Cow position:chr18:19688197-19687886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):99, 125

               
               
               Conread position:239-540
               
               
               Cow position:chr18:55549901-55549594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):96, 119

               
               
               Conread position:239-667
               
               
               Cow position:chr18:50382418-50381996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 10

               
               
               Conread position:239-670
               
               
               Cow position:chr18:10322965-10322536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 45

               
               
               Conread position:239-672
               
               
               Cow position:chr18:3115625-3115193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:299
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):94, 124

               
               
               Conread position:239-672
               
               
               Cow position:chr18:20641332-20641751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 74

               
               
               Conread position:239-672
               
               
               Cow position:chr18:55692987-55692555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 45

               
               
               Conread position:239-673
               
               
               Cow position:chr18:3422856-3422453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:297
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):177, 71

               
               
               Conread position:239-673
               
               
               Cow position:chr18:7965401-7964964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 115

               
               
               Conread position:239-673
               
               
               Cow position:chr18:12270681-12270227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:305
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):71, 250

               
               
               Conread position:239-673
               
               
               Cow position:chr18:18918794-18919220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 68

               
               
               Conread position:239-675
               
               
               Cow position:chr18:7966413-7965994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:295
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):64, 40

               
               
               Conread position:239-675
               
               
               Cow position:chr18:43822784-43823222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 118

               
               
               Conread position:239-675
               
               
               Cow position:chr18:49200804-49200371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:284
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):96, 123

               
               
               Conread position:239-684
               
               
               Cow position:chr18:17649570-17650016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:309
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):99, 128

               
               
               Conread position:239-693
               
               
               Cow position:chr18:31672350-31672793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 10

               
               
               Conread position:240-404
               
               
               Cow position:chr18:16137110-16137277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):77, 32

               
               
               Conread position:240-405
               
               
               Cow position:chr18:34444569-34444733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:240-407
               
               
               Cow position:chr18:36500913-36501077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):8, 71

               
               
               Conread position:240-415
               
               
               Cow position:chr18:49441010-49440834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):99, 12

               
               
               Conread position:240-417
               
               
               Cow position:chr18:17195179-17195354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:240-417
               
               
               Cow position:chr18:40028392-40028206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):60, 45

               
               
               Conread position:240-422
               
               
               Cow position:chr18:19809515-19809695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:240-422
               
               
               Cow position:chr18:19831743-19831571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:240-422
               
               
               Cow position:chr18:39097404-39097591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):77, 129

               
               
               Conread position:240-422
               
               
               Cow position:chr18:45897895-45897717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):60, 45

               
               
               Conread position:240-424
               
               
               Cow position:chr18:641147-641340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):133, 88

               
               
               Conread position:240-426
               
               
               Cow position:chr18:19961968-19962161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):80, 187

               
               
               Conread position:240-427
               
               
               Cow position:chr18:49280895-49281082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):88, 27

               
               
               Conread position:240-429
               
               
               Cow position:chr18:50004539-50004726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:240-430
               
               
               Cow position:chr18:49602874-49603068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:240-439
               
               
               Cow position:chr18:43057061-43056866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):82, 92

               
               
               Conread position:240-452
               
               
               Cow position:chr18:44917922-44917711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):95, 53

               
               
               Conread position:240-460
               
               
               Cow position:chr18:4851317-4851531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:240-463
               
               
               Cow position:chr18:35827211-35827430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):183, 9

               
               
               Conread position:240-465
               
               
               Cow position:chr18:4626622-4626844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):195, 162

               
               
               Conread position:240-468
               
               
               Cow position:chr18:19765354-19765127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):101, 84

               
               
               Conread position:240-471
               
               
               Cow position:chr18:32243572-32243801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):120, 70

               
               
               Conread position:240-473
               
               
               Cow position:chr18:38937988-38937755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 88

               
               
               Conread position:240-476
               
               
               Cow position:chr18:35888920-35889165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):60, 45

               
               
               Conread position:240-484
               
               
               Cow position:chr18:37189124-37189372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):92, 196

               
               
               Conread position:240-503
               
               
               Cow position:chr18:9040536-9040808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):67, 199

               
               
               Conread position:240-511
               
               
               Cow position:chr18:24508065-24508344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):177, 43

               
               
               Conread position:240-517
               
               
               Cow position:chr18:43796790-43797065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:203
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):8, 47

               
               
               Conread position:240-528
               
               
               Cow position:chr18:33883948-33883663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):67, 43

               
               
               Conread position:240-536
               
               
               Cow position:chr18:23630448-23630737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):227, 9

               
               
               Conread position:240-539
               
               
               Cow position:chr18:42292894-42293184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):175, 45

               
               
               Conread position:240-542
               
               
               Cow position:chr18:37303322-37303008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):61, 111

               
               
               Conread position:240-555
               
               
               Cow position:chr18:50095241-50095547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):171, 124

               
               
               Conread position:240-558
               
               
               Cow position:chr18:8170923-8171242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:231
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):174, 80

               
               
               Conread position:240-579
               
               
               Cow position:chr18:9066868-9066521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 93

               
               
               Conread position:240-581
               
               
               Cow position:chr18:43555345-43555704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 191

               
               
               Conread position:240-590
               
               
               Cow position:chr18:22055692-22056057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:273
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):21, 46

               
               
               Conread position:240-592
               
               
               Cow position:chr18:5072249-5072601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 69

               
               
               Conread position:240-602
               
               
               Cow position:chr18:30359974-30360335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 201

               
               
               Conread position:240-604
               
               
               Cow position:chr18:1399185-1399554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 9

               
               
               Conread position:240-615
               
               
               Cow position:chr18:30341014-30341389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 86

               
               
               Conread position:240-632
               
               
               Cow position:chr18:7414865-7415259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:279
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):10, 80

               
               
               Conread position:240-633
               
               
               Cow position:chr18:23714721-23715116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:275
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):106, 45

               
               
               Conread position:240-652
               
               
               Cow position:chr18:32883460-32883055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 34

               
               
               Conread position:240-665
               
               
               Cow position:chr18:26939140-26938724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 36

               
               
               Conread position:240-670
               
               
               Cow position:chr18:7956317-7955878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 36

               
               
               Conread position:240-670
               
               
               Cow position:chr18:11867506-11867083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 88

               
               
               Conread position:240-671
               
               
               Cow position:chr18:9366090-9365647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 198

               
               
               Conread position:240-671
               
               
               Cow position:chr18:9558134-9557713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:295
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):99, 46

               
               
               Conread position:240-671
               
               
               Cow position:chr18:46048922-46048496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 100

               
               
               Conread position:240-672
               
               
               Cow position:chr18:9974162-9974592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 88

               
               
               Conread position:240-672
               
               
               Cow position:chr18:11691238-11691678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 154

               
               
               Conread position:240-672
               
               
               Cow position:chr18:28101802-28101360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 82

               
               
               Conread position:240-673
               
               
               Cow position:chr18:2591993-2592440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 9

               
               
               Conread position:240-673
               
               
               Cow position:chr18:3044625-3044165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:318
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):96, 138

               
               
               Conread position:240-673
               
               
               Cow position:chr18:3417334-3416904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 157

               
               
               Conread position:240-673
               
               
               Cow position:chr18:6310248-6309813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 88

               
               
               Conread position:240-673
               
               
               Cow position:chr18:7650143-7649727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 33

               
               
               Conread position:240-673
               
               
               Cow position:chr18:12059162-12058750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 69

               
               
               Conread position:240-673
               
               
               Cow position:chr18:12117685-12118111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 87

               
               
               Conread position:240-673
               
               
               Cow position:chr18:21195179-21195605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 25

               
               
               Conread position:240-673
               
               
               Cow position:chr18:46452715-46453145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 70

               
               
               Conread position:240-673
               
               
               Cow position:chr18:47512162-47511728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 19

               
               
               Conread position:240-674
               
               
               Cow position:chr18:29065224-29065641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 46

               
               
               Conread position:240-675
               
               
               Cow position:chr18:11322754-11322319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 40

               
               
               Conread position:240-692
               
               
               Cow position:chr18:10905015-10904562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 88

               
               
               Conread position:240-697
               
               
               Cow position:chr18:7952378-7951912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:300
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):75, 197

               
               
               Conread position:241-377
               
               
               Cow position:chr18:30247838-30247973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:241-385
               
               
               Cow position:chr18:10117903-10117763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:241-412
               
               
               Cow position:chr18:32290869-32290708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:241-422
               
               
               Cow position:chr18:4530722-4530546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:241-422
               
               
               Cow position:chr18:45573548-45573365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):68, 95

               
               
               Conread position:241-427
               
               
               Cow position:chr18:50567071-50566882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):66, 113

               
               
               Conread position:241-431
               
               
               Cow position:chr18:8208256-8208451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):59, 44

               
               
               Conread position:241-450
               
               
               Cow position:chr18:4152387-4152598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):67, 8

               
               
               Conread position:241-470
               
               
               Cow position:chr18:45558310-45558083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:181
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):167, 69

               
               
               Conread position:241-473
               
               
               Cow position:chr18:47693221-47693000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):174, 69

               
               
               Conread position:241-519
               
               
               Cow position:chr18:41950380-41950103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):77, 28

               
               
               Conread position:241-526
               
               
               Cow position:chr18:728188-727912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):227, 56

               
               
               Conread position:241-527
               
               
               Cow position:chr18:23163061-23162772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:221
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):78, 44

               
               
               Conread position:241-539
               
               
               Cow position:chr18:9846251-9846530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):6, 85

               
               
               Conread position:241-540
               
               
               Cow position:chr18:50959656-50959352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):85, 116

               
               
               Conread position:241-592
               
               
               Cow position:chr18:12242444-12242086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 51

               
               
               Conread position:241-616
               
               
               Cow position:chr18:3212046-3211658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 12

               
               
               Conread position:241-630
               
               
               Cow position:chr18:33896247-33896647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 32

               
               
               Conread position:241-632
               
               
               Cow position:chr18:16545295-16545692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:259
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):85, 113

               
               
               Conread position:241-672
               
               
               Cow position:chr18:22120718-22121148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 35

               
               
               Conread position:241-673
               
               
               Cow position:chr18:3132606-3133009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:293
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):373, 79

               
               
               Conread position:241-673
               
               
               Cow position:chr18:3180578-3180153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 93

               
               
               Conread position:241-673
               
               
               Cow position:chr18:3209886-3209451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 86

               
               
               Conread position:241-674
               
               
               Cow position:chr18:19193205-19193618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 65

               
               
               Conread position:241-674
               
               
               Cow position:chr18:37023370-37023825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 296

               
               
               Conread position:241-683
               
               
               Cow position:chr18:43283589-43284035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 44

               
               
               Conread position:242-378
               
               
               Cow position:chr18:11814465-11814334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:242-401
               
               
               Cow position:chr18:4485762-4485606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:242-406
               
               
               Cow position:chr18:3709397-3709232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):74, 55

               
               
               Conread position:242-412
               
               
               Cow position:chr18:11857062-11856897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:242-417
               
               
               Cow position:chr18:21528816-21528638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:242-440
               
               
               Cow position:chr18:35786219-35786022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):170, 55

               
               
               Conread position:242-455
               
               
               Cow position:chr18:50632279-50632491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):172, 64

               
               
               Conread position:242-473
               
               
               Cow position:chr18:14225554-14225324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):172, 31

               
               
               Conread position:242-473
               
               
               Cow position:chr18:51383232-51383462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):171, 86

               
               
               Conread position:242-473
               
               
               Cow position:chr18:52414133-52413898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):32, 25

               
               
               Conread position:242-484
               
               
               Cow position:chr18:18844177-18843935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):175, 44

               
               
               Conread position:242-528
               
               
               Cow position:chr18:52402799-52403093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:207
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):68, 32

               
               
               Conread position:242-539
               
               
               Cow position:chr18:5632431-5632132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 82

               
               
               Conread position:242-539
               
               
               Cow position:chr18:29264199-29264491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):152, 77

               
               
               Conread position:242-552
               
               
               Cow position:chr18:10214025-10214341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:226
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):146, 92

               
               
               Conread position:242-623
               
               
               Cow position:chr18:5189525-5189909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:273
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):86, 54

               
               
               Conread position:242-633
               
               
               Cow position:chr18:1954414-1954823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 44

               
               
               Conread position:242-649
               
               
               Cow position:chr18:18592630-18592229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 44

               
               
               Conread position:242-670
               
               
               Cow position:chr18:10576268-10575844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 7

               
               
               Conread position:242-670
               
               
               Cow position:chr18:44262789-44262358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 74

               
               
               Conread position:242-673
               
               
               Cow position:chr18:11233587-11233164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:309
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):48, 134

               
               
               Conread position:242-673
               
               
               Cow position:chr18:27079033-27078582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:299
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):59, 174

               
               
               Conread position:242-673
               
               
               Cow position:chr18:45903730-45904159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 94

               
               
               Conread position:242-674
               
               
               Cow position:chr18:9010871-9010463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 78

               
               
               Conread position:242-674
               
               
               Cow position:chr18:29958015-29958415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:304
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):176, 16

               
               
               Conread position:242-674
               
               
               Cow position:chr18:55505568-55505132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 10

               
               
               Conread position:243-428
               
               
               Cow position:chr18:48000663-48000854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):145, 89

               
               
               Conread position:243-464
               
               
               Cow position:chr18:2773222-2773450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):64, 197

               
               
               Conread position:243-464
               
               
               Cow position:chr18:2776725-2776953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):64, 197

               
               
               Conread position:243-466
               
               
               Cow position:chr18:31556993-31557220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):85, 10

               
               
               Conread position:243-479
               
               
               Cow position:chr18:5647973-5647741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):173, 67

               
               
               Conread position:243-725
               
               
               Cow position:chr18:4668341-4668813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:313
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):122, 91

               
               
               Conread position:244-558
               
               
               Cow position:chr18:43950991-43950667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):82, 9

               
               
               Conread position:244-574
               
               
               Cow position:chr18:1392405-1392739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):94, 120

               
               
               Conread position:244-675
               
               
               Cow position:chr18:39114955-39115413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:317
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):72, 9

               
               
               Conread position:245-379
               
               
               Cow position:chr18:25139724-25139589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):67, 92

               
               
               Conread position:245-387
               
               
               Cow position:chr18:16417334-16417474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:245-395
               
               
               Cow position:chr18:10757894-10758042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):50, 62

               
               
               Conread position:245-414
               
               
               Cow position:chr18:104219-104043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:245-418
               
               
               Cow position:chr18:35857761-35857934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:245-441
               
               
               Cow position:chr18:41724651-41724853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):72, 28

               
               
               Conread position:245-509
               
               
               Cow position:chr18:25598070-25598345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):173, 89

               
               
               Conread position:245-528
               
               
               Cow position:chr18:49017646-49017381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):233, 28

               
               
               Conread position:245-571
               
               
               Cow position:chr18:48633940-48633623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):52, 31

               
               
               Conread position:245-605
               
               
               Cow position:chr18:42431929-42432296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 82

               
               
               Conread position:245-671
               
               
               Cow position:chr18:55499233-55498798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 83

               
               
               Conread position:245-673
               
               
               Cow position:chr18:33159106-33158696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 85

               
               
               Conread position:245-676
               
               
               Cow position:chr18:6609684-6610127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 93

               
               
               Conread position:246-412
               
               
               Cow position:chr18:21143806-21143968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):155, 49

               
               
               Conread position:246-605
               
               
               Cow position:chr18:11791080-11790730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:244
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):227, 22

               
               
               Conread position:246-656
               
               
               Cow position:chr18:48713704-48713302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 64

               
               
               Conread position:249-405
               
               
               Cow position:chr18:50276083-50276240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:249-422
               
               
               Cow position:chr18:49161141-49161318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):46, 84

               
               
               Conread position:249-572
               
               
               Cow position:chr18:30586077-30586390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):230, 58

               
               
               Conread position:249-602
               
               
               Cow position:chr18:5766568-5766214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 62

               
               
               Conread position:249-673
               
               
               Cow position:chr18:5578454-5578035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 71

               
               
               Conread position:249-673
               
               
               Cow position:chr18:20173978-20174397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 43

               
               
               Conread position:249-680
               
               
               Cow position:chr18:7945799-7945359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:302
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):96, 27

               
               
               Conread position:250-422
               
               
               Cow position:chr18:28322811-28322642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):165, 70

               
               
               Conread position:250-447
               
               
               Cow position:chr18:11672211-11672002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):51, 150

               
               
               Conread position:250-487
               
               
               Cow position:chr18:43014712-43014939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:250-521
               
               
               Cow position:chr18:35534992-35535266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):167, 23

               
               
               Conread position:251-388
               
               
               Cow position:chr18:6102807-6102943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:104
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:251-458
               
               
               Cow position:chr18:25757157-25757363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):64, 86

               
               
               Conread position:251-468
               
               
               Cow position:chr18:6399465-6399694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):59, 46

               
               
               Conread position:251-475
               
               
               Cow position:chr18:38601729-38601954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):74, 7

               
               
               Conread position:251-501
               
               
               Cow position:chr18:47417157-47416898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):80, 119

               
               
               Conread position:251-672
               
               
               Cow position:chr18:33502231-33502644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:293
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):75, 96

               
               
               Conread position:251-674
               
               
               Cow position:chr18:51757251-51756829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 124

               
               
               Conread position:252-465
               
               
               Cow position:chr18:19296031-19295829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):153, 73

               
               
               Conread position:252-617
               
               
               Cow position:chr18:247541-247898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 55

               
               
               Conread position:252-672
               
               
               Cow position:chr18:45104273-45104713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 95

               
               
               Conread position:253-402
               
               
               Cow position:chr18:44548591-44548740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:253-469
               
               
               Cow position:chr18:40047349-40047561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):162, 66

               
               
               Conread position:253-539
               
               
               Cow position:chr18:36768661-36768938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:211
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):125, 57

               
               
               Conread position:253-586
               
               
               Cow position:chr18:15517019-15517349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):161, 75

               
               
               Conread position:253-667
               
               
               Cow position:chr18:54572133-54572557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:281
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):74, 100

               
               
               Conread position:254-482
               
               
               Cow position:chr18:22516382-22516610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):164, 95

               
               
               Conread position:254-539
               
               
               Cow position:chr18:25006352-25006622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):159, 76

               
               
               Conread position:254-667
               
               
               Cow position:chr18:26999043-26998603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 99

               
               
               Conread position:254-674
               
               
               Cow position:chr18:42747752-42747327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 169

               
               
               Conread position:255-699
               
               
               Cow position:chr18:15613711-15614142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 55

               
               
               Conread position:257-429
               
               
               Cow position:chr18:43125228-43125062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):161, 63

               
               
               Conread position:257-431
               
               
               Cow position:chr18:3097874-3098058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:257-539
               
               
               Cow position:chr18:24266252-24266543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):63, 171

               
               
               Conread position:257-574
               
               
               Cow position:chr18:33504107-33504432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):64, 77

               
               
               Conread position:257-673
               
               
               Cow position:chr18:11779804-11779399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 178

               
               
               Conread position:257-673
               
               
               Cow position:chr18:55788842-55789259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 174

               
               
               Conread position:257-683
               
               
               Cow position:chr18:37381940-37382375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 92

               
               
               Conread position:259-518
               
               
               Cow position:chr18:24759510-24759768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:192
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):158, 65

               
               
               Conread position:259-559
               
               
               Cow position:chr18:35874227-35873917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):69, 32

               
               
               Conread position:260-421
               
               
               Cow position:chr18:31727497-31727661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):40, 25

               
               
               Conread position:261-673
               
               
               Cow position:chr18:49655828-49655448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:287
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):117, 56

               
               
               Conread position:261-674
               
               
               Cow position:chr18:29356486-29356898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 66

               
               
               Conread position:262-422
               
               
               Cow position:chr18:45186021-45185857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):66, 91

               
               
               Conread position:262-675
               
               
               Cow position:chr18:51691317-51691737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 39

               
               
               Conread position:270-588
               
               
               Cow position:chr18:23821691-23822002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):58, 152

               
               
               Conread position:272-517
               
               
               Cow position:chr18:20175058-20175303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):56, 101

               
               
               Conread position:276-472
               
               
               Cow position:chr18:47920881-47920674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:276-527
               
               
               Cow position:chr18:2774004-2774256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):52, 83

               
               
               Conread position:278-515
               
               
               Cow position:chr18:46647033-46647258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:279-626
               
               
               Cow position:chr18:858954-858586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:246
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):39, 80

               
               
               Conread position:281-675
               
               
               Cow position:chr18:5995598-5995203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 78

               
               
               Conread position:286-671
               
               
               Cow position:chr18:52693575-52693207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):180, 21

               
               
               Conread position:292-673
               
               
               Cow position:chr18:23766293-23766683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 149

               
               
               Conread position:293-558
               
               
               Cow position:chr18:52855169-52854893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):7, 24

               
               
               Conread position:294-672
               
               
               Cow position:chr18:29058386-29058762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:271
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):5, 52

               
               
               Conread position:298-610
               
               
               Cow position:chr18:55015474-55015176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):18, 43

               
               
               Conread position:298-625
               
               
               Cow position:chr18:39434933-39434604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 35

               
               
               Conread position:300-447
               
               
               Cow position:chr18:45985517-45985666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):115, 135

               
               
               Conread position:301-589
               
               
               Cow position:chr18:47835934-47835639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):22, 94

               
               
               Conread position:301-674
               
               
               Cow position:chr18:21768721-21768359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):229, 118

               
               
               Conread position:303-664
               
               
               Cow position:chr18:21192307-21192667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:266
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):18, 33

               
               
               Conread position:304-473
               
               
               Cow position:chr18:47705338-47705168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):109, 29

               
               
               Conread position:304-593
               
               
               Cow position:chr18:8300119-8299822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):114, 12

               
               
               Conread position:304-603
               
               
               Cow position:chr18:55806530-55806833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):13, 34

               
               
               Conread position:308-482
               
               
               Cow position:chr18:18699234-18699065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):110, 59

               
               
               Conread position:308-590
               
               
               Cow position:chr18:16686238-16686525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:215
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):106, 27

               
               
               Conread position:308-669
               
               
               Cow position:chr18:19272997-19273368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 25

               
               
               Conread position:309-539
               
               
               Cow position:chr18:4203832-4204054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):110, 24

               
               
               Conread position:310-529
               
               
               Cow position:chr18:4872160-4871951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):156, 23

               
               
               Conread position:310-585
               
               
               Cow position:chr18:21102678-21102957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):158, 105

               
               
               Conread position:310-597
               
               
               Cow position:chr18:27109194-27109492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):108, 121

               
               
               Conread position:310-645
               
               
               Cow position:chr18:51392546-51392886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 24

               
               
               Conread position:310-671
               
               
               Cow position:chr18:55000643-55001007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 71

               
               
               Conread position:310-672
               
               
               Cow position:chr18:25647150-25647516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 78

               
               
               Conread position:310-673
               
               
               Cow position:chr18:48453773-48453426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:249
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):21, 75

               
               
               Conread position:310-676
               
               
               Cow position:chr18:22214587-22214216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 126

               
               
               Conread position:311-584
               
               
               Cow position:chr18:36201532-36201808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 102

               
               
               Conread position:311-596
               
               
               Cow position:chr18:19896353-19896650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 24

               
               
               Conread position:311-617
               
               
               Cow position:chr18:45637320-45637607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):291, 22

               
               
               Conread position:311-649
               
               
               Cow position:chr18:33008162-33007813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 22

               
               
               Conread position:311-672
               
               
               Cow position:chr18:4797060-4796703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:262
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):107, 22

               
               
               Conread position:311-674
               
               
               Cow position:chr18:52634973-52635350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 315

               
               
               Conread position:312-673
               
               
               Cow position:chr18:17005356-17004983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 15

               
               
               Conread position:313-468
               
               
               Cow position:chr18:24342940-24342780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):8, 120

               
               
               Conread position:313-501
               
               
               Cow position:chr18:9176993-9176805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):166, 27

               
               
               Conread position:313-533
               
               
               Cow position:chr18:19883627-19883402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):87, 21

               
               
               Conread position:313-552
               
               
               Cow position:chr18:16997348-16997107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):106, 20

               
               
               Conread position:313-640
               
               
               Cow position:chr18:43020308-43020624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 121

               
               
               Conread position:313-670
               
               
               Cow position:chr18:38607315-38606972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):100, 20

               
               
               Conread position:313-672
               
               
               Cow position:chr18:21266602-21266242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 123

               
               
               Conread position:313-673
               
               
               Cow position:chr18:56159555-56159198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 20

               
               
               Conread position:314-539
               
               
               Cow position:chr18:48242285-48242056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):55, 19

               
               
               Conread position:314-673
               
               
               Cow position:chr18:36459024-36458667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 19

               
               
               Conread position:314-675
               
               
               Cow position:chr18:30794519-30794164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 20

               
               
               Conread position:314-675
               
               
               Cow position:chr18:51655948-51656322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 121

               
               
               Conread position:315-464
               
               
               Cow position:chr18:22170710-22170560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):100, 12

               
               
               Conread position:315-671
               
               
               Cow position:chr18:7359837-7359469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 18

               
               
               Conread position:315-675
               
               
               Cow position:chr18:25282463-25282824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 21

               
               
               Conread position:316-675
               
               
               Cow position:chr18:33157906-33157551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 17

               
               
               Conread position:317-659
               
               
               Cow position:chr18:38687170-38686839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:318-672
               
               
               Cow position:chr18:33407698-33407344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 60

               
               
               Conread position:319-670
               
               
               Cow position:chr18:51443349-51443695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:247
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):11, 101

               
               
               Conread position:319-673
               
               
               Cow position:chr18:19620030-19619681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 25

               
               
               Conread position:320-673
               
               
               Cow position:chr18:5711566-5711934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:260
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):95, 13

               
               
               Conread position:321-479
               
               
               Cow position:chr18:44523173-44523013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):68, 104

               
               
               Conread position:321-641
               
               
               Cow position:chr18:48828687-48829022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:241
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):5, 89

               
               
               Conread position:322-640
               
               
               Cow position:chr18:25984492-25984807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 12

               
               
               Conread position:322-673
               
               
               Cow position:chr18:35012230-35012573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 113

               
               
               Conread position:323-468
               
               
               Cow position:chr18:49324353-49324496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):140, 13

               
               
               Conread position:323-505
               
               
               Cow position:chr18:16379010-16378825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):16, 110

               
               
               Conread position:323-615
               
               
               Cow position:chr18:47828902-47828613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):207, 12

               
               
               Conread position:323-622
               
               
               Cow position:chr18:36746175-36746477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:219
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):106, 10

               
               
               Conread position:323-671
               
               
               Cow position:chr18:56184019-56183672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 10

               
               
               Conread position:323-673
               
               
               Cow position:chr18:9008209-9007882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:250
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):96, 14

               
               
               Conread position:323-673
               
               
               Cow position:chr18:50082173-50082512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 10

               
               
               Conread position:324-672
               
               
               Cow position:chr18:56171930-56172286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 89

               
               
               Conread position:325-477
               
               
               Cow position:chr18:17660477-17660633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):88, 110

               
               
               Conread position:327-494
               
               
               Cow position:chr18:23505412-23505245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):91, 108

               
               
               Conread position:327-673
               
               
               Cow position:chr18:29796347-29796692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:248
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):90, 156

               
               
               Conread position:327-673
               
               
               Cow position:chr18:42061156-42060812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):21, 31

               
               
               Conread position:328-577
               
               
               Cow position:chr18:56190882-56191147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:328-677
               
               
               Cow position:chr18:7952718-7952372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:259
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):17, 30

               
               
               Conread position:329-519
               
               
               Cow position:chr18:4534944-4535129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):77, 107

               
               
               Conread position:330-671
               
               
               Cow position:chr18:11685060-11684723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 105

               
               
               Conread position:330-686
               
               
               Cow position:chr18:11377442-11377084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 60

               
               
               Conread position:331-674
               
               
               Cow position:chr18:4666140-4666480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:249
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):99, 25

               
               
               Conread position:332-606
               
               
               Cow position:chr18:18369286-18369567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 14

               
               
               Conread position:332-672
               
               
               Cow position:chr18:44801813-44802151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 271

               
               
               Conread position:332-673
               
               
               Cow position:chr18:45571088-45570754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 35

               
               
               Conread position:334-673
               
               
               Cow position:chr18:47183219-47183551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 100

               
               
               Conread position:336-673
               
               
               Cow position:chr18:3166417-3166754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:241
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):58, 102

               
               
               Conread position:336-674
               
               
               Cow position:chr18:33299976-33299629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 103

               
               
               Conread position:337-520
               
               
               Cow position:chr18:20798399-20798205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:337-521
               
               
               Cow position:chr18:52406763-52406586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:337-555
               
               
               Cow position:chr18:25281820-25282036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):67, 95

               
               
               Conread position:337-601
               
               
               Cow position:chr18:54111279-54111020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):74, 98

               
               
               Conread position:337-645
               
               
               Cow position:chr18:55397370-55397066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):45, 30

               
               
               Conread position:337-667
               
               
               Cow position:chr18:50637402-50637724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:234
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):77, 37

               
               
               Conread position:337-673
               
               
               Cow position:chr18:28923776-28924098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 98

               
               
               Conread position:337-674
               
               
               Cow position:chr18:47517134-47517477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:256
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):82, 7

               
               
               Conread position:339-629
               
               
               Cow position:chr18:2863921-2864222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):85, 80

               
               
               Conread position:340-660
               
               
               Cow position:chr18:56166049-56165729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 94

               
               
               Conread position:341-674
               
               
               Cow position:chr18:4182121-4182459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 23

               
               
               Conread position:344-670
               
               
               Cow position:chr18:4381357-4381030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:242
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):76, 23

               
               
               Conread position:344-673
               
               
               Cow position:chr18:55461645-55461974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:242
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):73, 21

               
               
               Conread position:345-673
               
               
               Cow position:chr18:248752-249070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:231
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):79, 74

               
               
               Conread position:346-673
               
               
               Cow position:chr18:55589430-55589742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:237
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):138, 60

               
               
               Conread position:347-522
               
               
               Cow position:chr18:49659822-49659995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):45, 90

               
               
               Conread position:348-673
               
               
               Cow position:chr18:13360114-13359795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 71

               
               
               Conread position:354-567
               
               
               Cow position:chr18:31125174-31125386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):83, 59

               
               
               Conread position:354-673
               
               
               Cow position:chr18:32773932-32773612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:232
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):65, 10

               
               
               Conread position:354-675
               
               
               Cow position:chr18:45961217-45961529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:227
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):70, 65

               
               
               Conread position:356-535
               
               
               Cow position:chr18:22274789-22274965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):63, 35

               
               
               Conread position:356-615
               
               
               Cow position:chr18:36183854-36184114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):68, 78

               
               
               Conread position:358-670
               
               
               Cow position:chr18:4078844-4078541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):61, 31

               
               
               Conread position:359-675
               
               
               Cow position:chr18:6275860-6275547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:227
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):71, 109

               
               
               Conread position:360-672
               
               
               Cow position:chr18:25206140-25206458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 74

               
               
               Conread position:364-590
               
               
               Cow position:chr18:4601974-4602198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):163, 58

               
               
               Conread position:364-673
               
               
               Cow position:chr18:14815304-14815602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 43

               
               
               Conread position:368-597
               
               
               Cow position:chr18:52703806-52704048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):61, 161

               
               
               Conread position:368-674
               
               
               Cow position:chr18:55553007-55552697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:227
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):45, 104

               
               
               Conread position:370-672
               
               
               Cow position:chr18:30248101-30248394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):153, 0

               
               
               Conread position:372-604
               
               
               Cow position:chr18:3387079-3387325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:372-631
               
               
               Cow position:chr18:47812505-47812245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):63, 10

               
               
               Conread position:376-675
               
               
               Cow position:chr18:54658336-54658032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):89, 18

               
               
               Conread position:381-566
               
               
               Cow position:chr18:4952183-4952373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):99, 34

               
               
               Conread position:383-620
               
               
               Cow position:chr18:6103072-6103313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):35, 55

               
               
               Conread position:390-673
               
               
               Cow position:chr18:14048727-14048446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 48

               
               
               Conread position:391-673
               
               
               Cow position:chr18:16417689-16417964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 28

               
               
               Conread position:396-656
               
               
               Cow position:chr18:21205381-21205116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):22, 81

               
               
               Conread position:399-637
               
               
               Cow position:chr18:219345-219101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):75, 16

               
               
               Conread position:402-671
               
               
               Cow position:chr18:20481876-20482140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:205
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):17, 37

               
               
               Conread position:403-623
               
               
               Cow position:chr18:54056551-54056341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):124, 12

               
               
               Conread position:405-674
               
               
               Cow position:chr18:35636343-35636618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):25, 61

               
               
               Conread position:409-645
               
               
               Cow position:chr18:42966864-42966615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):15, 57

               
               
               Conread position:411-629
               
               
               Cow position:chr18:14085457-14085238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):65, 10

               
               
               Conread position:414-667
               
               
               Cow position:chr18:26937714-26937471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):16, 51

               
               
               Conread position:417-673
               
               
               Cow position:chr18:33606619-33606365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):49, 19

               
               
               Conread position:418-673
               
               
               Cow position:chr18:56150656-56150923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 18

               
               
               Conread position:428-671
               
               
               Cow position:chr18:4316290-4316042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):50, 66

               
               
               Conread position:434-667
               
               
               Cow position:chr18:35582125-35582363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:189
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):48, 90

               
               
               Conread position:434-673
               
               
               Cow position:chr18:11166953-11166712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):51, 85

               
               
               Conread position:434-673
               
               
               Cow position:chr18:41271058-41270823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:181
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):119, 46

               
               
               Conread position:435-628
               
               
               Cow position:chr18:53962663-53962461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):38, 86

               
               
               Conread position:436-670
               
               
               Cow position:chr18:52658382-52658157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):48, 84

               
               
               Conread position:436-673
               
               
               Cow position:chr18:11680694-11680453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 84

               
               
               Conread position:436-673
               
               
               Cow position:chr18:47314310-47314561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):28, 182

               
               
               Conread position:436-674
               
               
               Cow position:chr18:1582300-1582543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):33, 214

               
               
               Conread position:436-674
               
               
               Cow position:chr18:35076363-35076118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):39, 87

               
               
               Conread position:439-634
               
               
               Cow position:chr18:28823002-28823197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):28, 43

               
               
               Conread position:439-667
               
               
               Cow position:chr18:52382671-52382437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):32, 86

               
               
               Conread position:440-665
               
               
               Cow position:chr18:29649720-29649952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):101, 77

               
               
               Conread position:440-673
               
               
               Cow position:chr18:48290473-48290705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):28, 86

               
               
               Conread position:446-672
               
               
               Cow position:chr18:19159012-19159231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):19, 35

               
               
               Conread position:449-672
               
               
               Cow position:chr18:18957839-18958057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):98, 30

               
               
               Conread position:455-672
               
               
               Cow position:chr18:39279044-39279263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):49, 26

               
               
               Conread position:457-673
               
               
               Cow position:chr18:36445388-36445165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):70, 62

               
               
               Conread position:462-674
               
               
               Cow position:chr18:37702913-37703113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:463-673
               
               
               Cow position:chr18:23807933-23808140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):59, 18

               
               
               Conread position:478-687
               
               
               Cow position:chr18:5647176-5646965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):58, 121

               
               
               Conread position:483-674
               
               
               Cow position:chr18:9818761-9818567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):44, 36

               
               
               Conread position:483-674
               
               
               Cow position:chr18:35058262-35058072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):53, 89

               
               
               Conread position:485-614
               
               
               Cow position:chr18:35419731-35419598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):44, 35

               
               
               Conread position:485-675
               
               
               Cow position:chr18:33272854-33272676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):64, 38

               
               
               Conread position:159-687
               
               
               Cow position:chr19:20622936-20622398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:553
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 27

               
               
               Conread position:162-574
               
               
               Cow position:chr19:42904263-42903857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:296
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):27, 22

               
               
               Conread position:227-673
               
               
               Cow position:chr19:15887113-15887568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 58

               
               
               Conread position:230-655
               
               
               Cow position:chr19:33055712-33056136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:282
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):10, 144

               
               
               Conread position:232-660
               
               
               Cow position:chr19:8209208-8209622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:279
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):126, 111

               
               
               Conread position:233-469
               
               
               Cow position:chr19:10930230-10930457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):179, 17

               
               
               Conread position:233-663
               
               
               Cow position:chr19:29626098-29625668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 96

               
               
               Conread position:233-673
               
               
               Cow position:chr19:6687804-6688251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:233-673
               
               
               Cow position:chr19:35540483-35540059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 55

               
               
               Conread position:233-673
               
               
               Cow position:chr19:43431125-43431567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 53

               
               
               Conread position:234-397
               
               
               Cow position:chr19:36191449-36191287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):14, 133

               
               
               Conread position:234-416
               
               
               Cow position:chr19:42544725-42544542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):92, 18

               
               
               Conread position:234-422
               
               
               Cow position:chr19:6093670-6093491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):181, 85

               
               
               Conread position:234-422
               
               
               Cow position:chr19:53036688-53036869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):184, 72

               
               
               Conread position:234-425
               
               
               Cow position:chr19:53189650-53189851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:234-442
               
               
               Cow position:chr19:29139400-29139190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):94, 18

               
               
               Conread position:234-471
               
               
               Cow position:chr19:12103186-12103415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:234-479
               
               
               Cow position:chr19:11646760-11646515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):180, 61

               
               
               Conread position:234-567
               
               
               Cow position:chr19:15091950-15092271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):244, 16

               
               
               Conread position:234-576
               
               
               Cow position:chr19:15853123-15852795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 95

               
               
               Conread position:234-630
               
               
               Cow position:chr19:23784226-23784604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 56

               
               
               Conread position:234-643
               
               
               Cow position:chr19:36097419-36097005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:284
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):92, 18

               
               
               Conread position:234-648
               
               
               Cow position:chr19:17972073-17972480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):241, 19

               
               
               Conread position:234-667
               
               
               Cow position:chr19:33033249-33033686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 15

               
               
               Conread position:234-669
               
               
               Cow position:chr19:35762063-35762501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 15

               
               
               Conread position:234-672
               
               
               Cow position:chr19:48723230-48722780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 47

               
               
               Conread position:234-673
               
               
               Cow position:chr19:268544-268108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 51

               
               
               Conread position:234-673
               
               
               Cow position:chr19:1968124-1968550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 77

               
               
               Conread position:234-673
               
               
               Cow position:chr19:14348220-14347766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 15

               
               
               Conread position:234-673
               
               
               Cow position:chr19:25726689-25727123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 39

               
               
               Conread position:234-673
               
               
               Cow position:chr19:46455037-46454605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 87

               
               
               Conread position:234-676
               
               
               Cow position:chr19:15438301-15437860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 188

               
               
               Conread position:235-387
               
               
               Cow position:chr19:41388955-41388805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:235-405
               
               
               Cow position:chr19:20517620-20517461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):8, 52

               
               
               Conread position:235-408
               
               
               Cow position:chr19:4602502-4602672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:235-417
               
               
               Cow position:chr19:47727227-47727404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):91, 146

               
               
               Conread position:235-473
               
               
               Cow position:chr19:49290262-49290497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):7, 94

               
               
               Conread position:235-509
               
               
               Cow position:chr19:10734968-10735234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):81, 14

               
               
               Conread position:235-521
               
               
               Cow position:chr19:55583732-55583434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):13, 206

               
               
               Conread position:235-539
               
               
               Cow position:chr19:39664380-39664691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):93, 40

               
               
               Conread position:235-552
               
               
               Cow position:chr19:48744074-48744393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):55, 35

               
               
               Conread position:235-586
               
               
               Cow position:chr19:39384852-39385200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:248
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):95, 42

               
               
               Conread position:235-615
               
               
               Cow position:chr19:55395102-55394715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:271
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):91, 17

               
               
               Conread position:235-637
               
               
               Cow position:chr19:48960588-48960180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 93

               
               
               Conread position:235-644
               
               
               Cow position:chr19:24137459-24137041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 17

               
               
               Conread position:235-669
               
               
               Cow position:chr19:30232904-30232487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 17

               
               
               Conread position:235-673
               
               
               Cow position:chr19:2577755-2577330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 168

               
               
               Conread position:235-673
               
               
               Cow position:chr19:6417803-6417353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 98

               
               
               Conread position:235-673
               
               
               Cow position:chr19:11191426-11191869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 46

               
               
               Conread position:236-387
               
               
               Cow position:chr19:12130798-12130951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:236-408
               
               
               Cow position:chr19:4485953-4486128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):11, 49

               
               
               Conread position:236-411
               
               
               Cow position:chr19:22871063-22871236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:236-417
               
               
               Cow position:chr19:25916100-25915926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:236-452
               
               
               Cow position:chr19:34654415-34654635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):12, 168

               
               
               Conread position:236-454
               
               
               Cow position:chr19:30227716-30227494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):92, 24

               
               
               Conread position:236-501
               
               
               Cow position:chr19:24693197-24692935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):178, 13

               
               
               Conread position:236-513
               
               
               Cow position:chr19:4459247-4459527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):15, 11

               
               
               Conread position:236-616
               
               
               Cow position:chr19:12747584-12747969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 16

               
               
               Conread position:236-634
               
               
               Cow position:chr19:25769868-25769454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 191

               
               
               Conread position:236-672
               
               
               Cow position:chr19:14253829-14253387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 235

               
               
               Conread position:236-683
               
               
               Cow position:chr19:43035436-43034986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 16

               
               
               Conread position:237-373
               
               
               Cow position:chr19:49959063-49958927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:237-413
               
               
               Cow position:chr19:14421735-14421919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):95, 60

               
               
               Conread position:237-431
               
               
               Cow position:chr19:11211082-11211282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):89, 183

               
               
               Conread position:237-458
               
               
               Cow position:chr19:25835144-25835357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:237-545
               
               
               Cow position:chr19:1791502-1791828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):78, 15

               
               
               Conread position:237-553
               
               
               Cow position:chr19:23378872-23378557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:234
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):7, 201

               
               
               Conread position:237-605
               
               
               Cow position:chr19:13840548-13840177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:269
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):178, 39

               
               
               Conread position:237-673
               
               
               Cow position:chr19:11376228-11376651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 68

               
               
               Conread position:237-673
               
               
               Cow position:chr19:21199342-21198881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 12

               
               
               Conread position:237-673
               
               
               Cow position:chr19:55247825-55247380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 16

               
               
               Conread position:237-675
               
               
               Cow position:chr19:5912764-5913198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 180

               
               
               Conread position:237-676
               
               
               Cow position:chr19:51750973-51751420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:305
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):6, 29

               
               
               Conread position:238-405
               
               
               Cow position:chr19:35072859-35073028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):92, 122

               
               
               Conread position:238-410
               
               
               Cow position:chr19:22414074-22414246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):6, 91

               
               
               Conread position:238-413
               
               
               Cow position:chr19:7794841-7794670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):88, 14

               
               
               Conread position:238-417
               
               
               Cow position:chr19:1614966-1614786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):79, 106

               
               
               Conread position:238-417
               
               
               Cow position:chr19:6020888-6021069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):93, 15

               
               
               Conread position:238-417
               
               
               Cow position:chr19:42776625-42776445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):88, 14

               
               
               Conread position:238-431
               
               
               Cow position:chr19:41718771-41718965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):90, 11

               
               
               Conread position:238-464
               
               
               Cow position:chr19:11866117-11866342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):45, 12

               
               
               Conread position:238-465
               
               
               Cow position:chr19:13325307-13325522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):180, 14

               
               
               Conread position:238-469
               
               
               Cow position:chr19:2068455-2068226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):180, 15

               
               
               Conread position:238-472
               
               
               Cow position:chr19:20378844-20379076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):103, 14

               
               
               Conread position:238-505
               
               
               Cow position:chr19:6309731-6309995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):180, 14

               
               
               Conread position:238-505
               
               
               Cow position:chr19:18504974-18505245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):86, 115

               
               
               Conread position:238-535
               
               
               Cow position:chr19:26754229-26753931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):93, 14

               
               
               Conread position:238-549
               
               
               Cow position:chr19:25570784-25570484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):105, 85

               
               
               Conread position:238-588
               
               
               Cow position:chr19:1650698-1650338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:238
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):136, 96

               
               
               Conread position:238-600
               
               
               Cow position:chr19:54175362-54175000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:243
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):154, 14

               
               
               Conread position:238-601
               
               
               Cow position:chr19:9531440-9531055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:258
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):88, 18

               
               
               Conread position:238-613
               
               
               Cow position:chr19:55957376-55957766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:265
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):58, 14

               
               
               Conread position:238-634
               
               
               Cow position:chr19:42564338-42563925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 15

               
               
               Conread position:238-637
               
               
               Cow position:chr19:25673327-25673729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:279
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):40, 14

               
               
               Conread position:238-645
               
               
               Cow position:chr19:51620986-51621401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 15

               
               
               Conread position:238-657
               
               
               Cow position:chr19:54943160-54942745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 104

               
               
               Conread position:238-673
               
               
               Cow position:chr19:3811829-3812261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 80

               
               
               Conread position:238-673
               
               
               Cow position:chr19:12155055-12154603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:294
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):40, 11

               
               
               Conread position:239-402
               
               
               Cow position:chr19:10172521-10172365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:239-405
               
               
               Cow position:chr19:30384906-30385068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:239-407
               
               
               Cow position:chr19:30917751-30917921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):79, 67

               
               
               Conread position:239-412
               
               
               Cow position:chr19:14823443-14823274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):61, 31

               
               
               Conread position:239-413
               
               
               Cow position:chr19:33691330-33691148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:239-416
               
               
               Cow position:chr19:18050975-18051148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):85, 16

               
               
               Conread position:239-421
               
               
               Cow position:chr19:41946912-41946724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):75, 97

               
               
               Conread position:239-422
               
               
               Cow position:chr19:2137637-2137818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):176, 80

               
               
               Conread position:239-422
               
               
               Cow position:chr19:37109417-37109593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):70, 33

               
               
               Conread position:239-422
               
               
               Cow position:chr19:52356442-52356259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):175, 11

               
               
               Conread position:239-427
               
               
               Cow position:chr19:12760909-12761100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):80, 98

               
               
               Conread position:239-431
               
               
               Cow position:chr19:7594965-7595147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:239-435
               
               
               Cow position:chr19:31768443-31768632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):89, 35

               
               
               Conread position:239-441
               
               
               Cow position:chr19:14588596-14588390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):87, 34

               
               
               Conread position:239-467
               
               
               Cow position:chr19:30007376-30007153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):179, 34

               
               
               Conread position:239-482
               
               
               Cow position:chr19:21176555-21176794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):176, 88

               
               
               Conread position:239-504
               
               
               Cow position:chr19:11559844-11560120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):96, 202

               
               
               Conread position:239-512
               
               
               Cow position:chr19:34420600-34420328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):236, 175

               
               
               Conread position:239-514
               
               
               Cow position:chr19:12052656-12052934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:201
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):69, 153

               
               
               Conread position:239-514
               
               
               Cow position:chr19:12067935-12067657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:201
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):69, 153

               
               
               Conread position:239-519
               
               
               Cow position:chr19:4297876-4297591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):190, 102

               
               
               Conread position:239-545
               
               
               Cow position:chr19:23085049-23084737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):98, 124

               
               
               Conread position:239-552
               
               
               Cow position:chr19:20665876-20666198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:216
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):63, 55

               
               
               Conread position:239-557
               
               
               Cow position:chr19:13121095-13121408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:235
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):229, 80

               
               
               Conread position:239-574
               
               
               Cow position:chr19:52185566-52185920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 238

               
               
               Conread position:239-579
               
               
               Cow position:chr19:46094436-46094795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 201

               
               
               Conread position:239-586
               
               
               Cow position:chr19:52187675-52187332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:231
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):173, 94

               
               
               Conread position:239-605
               
               
               Cow position:chr19:51307340-51306959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:252
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):96, 119

               
               
               Conread position:239-614
               
               
               Cow position:chr19:44036-43658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:270
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):61, 45

               
               
               Conread position:239-663
               
               
               Cow position:chr19:29368585-29368163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):240, 10

               
               
               Conread position:239-672
               
               
               Cow position:chr19:729557-729975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 34

               
               
               Conread position:239-672
               
               
               Cow position:chr19:2589706-2589266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:317
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):89, 37

               
               
               Conread position:239-672
               
               
               Cow position:chr19:12698508-12698078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 19

               
               
               Conread position:239-674
               
               
               Cow position:chr19:52456564-52457008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 10

               
               
               Conread position:239-675
               
               
               Cow position:chr19:33748043-33747605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:297
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):63, 28

               
               
               Conread position:239-675
               
               
               Cow position:chr19:39361344-39360892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 137

               
               
               Conread position:239-675
               
               
               Cow position:chr19:53776378-53776826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:298
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):63, 125

               
               
               Conread position:240-381
               
               
               Cow position:chr19:16686792-16686935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):67, 44

               
               
               Conread position:240-387
               
               
               Cow position:chr19:19174706-19174561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):9, 35

               
               
               Conread position:240-387
               
               
               Cow position:chr19:31319349-31319204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):10, 87

               
               
               Conread position:240-405
               
               
               Cow position:chr19:6855107-6854943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:240-408
               
               
               Cow position:chr19:12686019-12685852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:240-409
               
               
               Cow position:chr19:49683675-49683844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):81, 33

               
               
               Conread position:240-411
               
               
               Cow position:chr19:14596885-14596708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):67, 130

               
               
               Conread position:240-412
               
               
               Cow position:chr19:43896491-43896326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:240-417
               
               
               Cow position:chr19:2793469-2793645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):112, 105

               
               
               Conread position:240-417
               
               
               Cow position:chr19:24220315-24220487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):10, 91

               
               
               Conread position:240-419
               
               
               Cow position:chr19:46822899-46822720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):82, 90

               
               
               Conread position:240-421
               
               
               Cow position:chr19:4586359-4586539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):175, 84

               
               
               Conread position:240-422
               
               
               Cow position:chr19:23559575-23559389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):55, 76

               
               
               Conread position:240-422
               
               
               Cow position:chr19:24933341-24933513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):178, 69

               
               
               Conread position:240-422
               
               
               Cow position:chr19:31729455-31729270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):86, 13

               
               
               Conread position:240-431
               
               
               Cow position:chr19:11816532-11816727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):10, 86

               
               
               Conread position:240-436
               
               
               Cow position:chr19:44757285-44757484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):49, 100

               
               
               Conread position:240-447
               
               
               Cow position:chr19:25832010-25832218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):38, 82

               
               
               Conread position:240-452
               
               
               Cow position:chr19:55438899-55438679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:240-467
               
               
               Cow position:chr19:26167725-26167951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):179, 36

               
               
               Conread position:240-469
               
               
               Cow position:chr19:38664124-38664361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):41, 183

               
               
               Conread position:240-470
               
               
               Cow position:chr19:37560018-37560241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:171
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):209, 72

               
               
               Conread position:240-472
               
               
               Cow position:chr19:23756561-23756787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):177, 70

               
               
               Conread position:240-473
               
               
               Cow position:chr19:10538368-10538596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):174, 82

               
               
               Conread position:240-473
               
               
               Cow position:chr19:28810126-28810362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):67, 80

               
               
               Conread position:240-474
               
               
               Cow position:chr19:10238926-10238691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):172, 93

               
               
               Conread position:240-475
               
               
               Cow position:chr19:5406691-5406451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):55, 88

               
               
               Conread position:240-475
               
               
               Cow position:chr19:46713814-46713590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):176, 55

               
               
               Conread position:240-479
               
               
               Cow position:chr19:6344272-6344021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):69, 144

               
               
               Conread position:240-483
               
               
               Cow position:chr19:37067322-37067088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):174, 9

               
               
               Conread position:240-487
               
               
               Cow position:chr19:40002167-40002414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):135, 33

               
               
               Conread position:240-503
               
               
               Cow position:chr19:1978365-1978092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):92, 67

               
               
               Conread position:240-503
               
               
               Cow position:chr19:42767913-42768175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):124, 70

               
               
               Conread position:240-507
               
               
               Cow position:chr19:11194574-11194843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):60, 81

               
               
               Conread position:240-509
               
               
               Cow position:chr19:8965461-8965180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):67, 201

               
               
               Conread position:240-510
               
               
               Cow position:chr19:37466871-37467142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 89

               
               
               Conread position:240-517
               
               
               Cow position:chr19:33575709-33575433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):195, 80

               
               
               Conread position:240-521
               
               
               Cow position:chr19:19489629-19489919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):79, 20

               
               
               Conread position:240-521
               
               
               Cow position:chr19:40126975-40127260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):85, 101

               
               
               Conread position:240-521
               
               
               Cow position:chr19:49221432-49221710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 93

               
               
               Conread position:240-526
               
               
               Cow position:chr19:51194433-51194145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):51, 45

               
               
               Conread position:240-528
               
               
               Cow position:chr19:750380-750110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):178, 71

               
               
               Conread position:240-539
               
               
               Cow position:chr19:52750569-52750871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:225
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):48, 37

               
               
               Conread position:240-540
               
               
               Cow position:chr19:10970918-10971207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):141, 45

               
               
               Conread position:240-572
               
               
               Cow position:chr19:52158732-52158386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):80, 135

               
               
               Conread position:240-592
               
               
               Cow position:chr19:3217193-3216849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:256
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):179, 20

               
               
               Conread position:240-600
               
               
               Cow position:chr19:3245866-3246227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):86, 8

               
               
               Conread position:240-605
               
               
               Cow position:chr19:34166558-34166182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 41

               
               
               Conread position:240-605
               
               
               Cow position:chr19:56063252-56063616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 45

               
               
               Conread position:240-637
               
               
               Cow position:chr19:22043167-22043553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 87

               
               
               Conread position:240-650
               
               
               Cow position:chr19:33903236-33903645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):290, 188

               
               
               Conread position:240-667
               
               
               Cow position:chr19:6532063-6531651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 9

               
               
               Conread position:240-669
               
               
               Cow position:chr19:5185068-5185492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):287, 85

               
               
               Conread position:240-669
               
               
               Cow position:chr19:55951974-55952390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 37

               
               
               Conread position:240-673
               
               
               Cow position:chr19:7053155-7053579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:293
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):7, 33

               
               
               Conread position:240-673
               
               
               Cow position:chr19:11003437-11003876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:271
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):80, 212

               
               
               Conread position:240-673
               
               
               Cow position:chr19:16096363-16096798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 195

               
               
               Conread position:240-673
               
               
               Cow position:chr19:16567349-16566913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 102

               
               
               Conread position:240-673
               
               
               Cow position:chr19:20661222-20661661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 177

               
               
               Conread position:240-673
               
               
               Cow position:chr19:23304299-23304740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 189

               
               
               Conread position:240-673
               
               
               Cow position:chr19:41946370-41945943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 10

               
               
               Conread position:240-673
               
               
               Cow position:chr19:42695179-42694742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 67

               
               
               Conread position:240-673
               
               
               Cow position:chr19:50562873-50562439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:303
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):86, 291

               
               
               Conread position:240-674
               
               
               Cow position:chr19:26057361-26057796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:270
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):149, 46

               
               
               Conread position:240-675
               
               
               Cow position:chr19:24062464-24062049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 80

               
               
               Conread position:240-675
               
               
               Cow position:chr19:26706034-26706453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:296
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):172, 45

               
               
               Conread position:240-676
               
               
               Cow position:chr19:30471167-30471586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 80

               
               
               Conread position:241-409
               
               
               Cow position:chr19:14252020-14252186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):134, 39

               
               
               Conread position:241-412
               
               
               Cow position:chr19:21790920-21790751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):84, 8

               
               
               Conread position:241-412
               
               
               Cow position:chr19:28137335-28137172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:241-447
               
               
               Cow position:chr19:39981929-39981717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):9, 138

               
               
               Conread position:241-467
               
               
               Cow position:chr19:23831538-23831311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):36, 169

               
               
               Conread position:241-468
               
               
               Cow position:chr19:38732327-38732099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):173, 93

               
               
               Conread position:241-472
               
               
               Cow position:chr19:28037728-28037949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):174, 9

               
               
               Conread position:241-482
               
               
               Cow position:chr19:23088170-23087931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:185
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):173, 79

               
               
               Conread position:241-506
               
               
               Cow position:chr19:47184891-47185161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 154

               
               
               Conread position:241-520
               
               
               Cow position:chr19:3870786-3870511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):174, 20

               
               
               Conread position:241-539
               
               
               Cow position:chr19:24453320-24453621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):84, 9

               
               
               Conread position:241-658
               
               
               Cow position:chr19:25382493-25382936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:300
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):77, 188

               
               
               Conread position:241-667
               
               
               Cow position:chr19:19804332-19804772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:288
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):85, 118

               
               
               Conread position:241-671
               
               
               Cow position:chr19:13267018-13267428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:304
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):241, 12

               
               
               Conread position:241-673
               
               
               Cow position:chr19:10081277-10080823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 286

               
               
               Conread position:241-673
               
               
               Cow position:chr19:10186695-10186254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 8

               
               
               Conread position:241-673
               
               
               Cow position:chr19:53371704-53372142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 188

               
               
               Conread position:241-674
               
               
               Cow position:chr19:39622597-39623033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 8

               
               
               Conread position:242-382
               
               
               Cow position:chr19:21278653-21278518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:242-401
               
               
               Cow position:chr19:24068093-24068255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:242-410
               
               
               Cow position:chr19:27968506-27968676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):86, 55

               
               
               Conread position:242-414
               
               
               Cow position:chr19:39378110-39378274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:242-417
               
               
               Cow position:chr19:2358266-2358085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):65, 136

               
               
               Conread position:242-431
               
               
               Cow position:chr19:7558734-7558544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):89, 120

               
               
               Conread position:242-434
               
               
               Cow position:chr19:17260097-17259901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):101, 32

               
               
               Conread position:242-447
               
               
               Cow position:chr19:12279914-12279711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):172, 26

               
               
               Conread position:242-465
               
               
               Cow position:chr19:32938047-32937840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:242-468
               
               
               Cow position:chr19:26269037-26269268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):70, 96

               
               
               Conread position:242-476
               
               
               Cow position:chr19:7147868-7148112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):78, 126

               
               
               Conread position:242-479
               
               
               Cow position:chr19:3857722-3857966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):173, 55

               
               
               Conread position:242-490
               
               
               Cow position:chr19:17355047-17354794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):86, 107

               
               
               Conread position:242-524
               
               
               Cow position:chr19:18054071-18054342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):171, 78

               
               
               Conread position:242-535
               
               
               Cow position:chr19:14631854-14632143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 7

               
               
               Conread position:242-591
               
               
               Cow position:chr19:41497455-41497798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:249
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):87, 13

               
               
               Conread position:242-605
               
               
               Cow position:chr19:24759699-24760067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 65

               
               
               Conread position:242-640
               
               
               Cow position:chr19:38111655-38111255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 11

               
               
               Conread position:242-671
               
               
               Cow position:chr19:43413967-43413537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 78

               
               
               Conread position:242-671
               
               
               Cow position:chr19:47671922-47671507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 66

               
               
               Conread position:242-673
               
               
               Cow position:chr19:3621617-3621183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 47

               
               
               Conread position:242-673
               
               
               Cow position:chr19:22765800-22765371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 35

               
               
               Conread position:242-673
               
               
               Cow position:chr19:29627194-29627620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:298
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):74, 104

               
               
               Conread position:242-674
               
               
               Cow position:chr19:4587540-4587967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 31

               
               
               Conread position:242-674
               
               
               Cow position:chr19:10755489-10755063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 106

               
               
               Conread position:242-674
               
               
               Cow position:chr19:36845433-36845001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 43

               
               
               Conread position:242-754
               
               
               Cow position:chr19:41024409-41023902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 72

               
               
               Conread position:243-454
               
               
               Cow position:chr19:8185392-8185177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):87, 194

               
               
               Conread position:243-539
               
               
               Cow position:chr19:2220885-2221190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 195

               
               
               Conread position:243-539
               
               
               Cow position:chr19:25041058-25041349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):88, 19

               
               
               Conread position:243-663
               
               
               Cow position:chr19:5115705-5116103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:291
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):170, 67

               
               
               Conread position:243-673
               
               
               Cow position:chr19:7668882-7668459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 147

               
               
               Conread position:244-538
               
               
               Cow position:chr19:39254263-39254562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):30, 49

               
               
               Conread position:244-674
               
               
               Cow position:chr19:387318-386897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 27

               
               
               Conread position:245-417
               
               
               Cow position:chr19:51637230-51637053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):53, 40

               
               
               Conread position:245-422
               
               
               Cow position:chr19:35623578-35623401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):77, 138

               
               
               Conread position:245-423
               
               
               Cow position:chr19:38597252-38597077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:245-431
               
               
               Cow position:chr19:15076006-15076202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:245-503
               
               
               Cow position:chr19:43373233-43372968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):61, 98

               
               
               Conread position:245-517
               
               
               Cow position:chr19:23889302-23889571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 8

               
               
               Conread position:245-524
               
               
               Cow position:chr19:3497762-3498049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):60, 175

               
               
               Conread position:245-594
               
               
               Cow position:chr19:34288200-34287854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 91

               
               
               Conread position:245-629
               
               
               Cow position:chr19:22449732-22450134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:276
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):81, 199

               
               
               Conread position:245-645
               
               
               Cow position:chr19:6079165-6079577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 182

               
               
               Conread position:245-672
               
               
               Cow position:chr19:7637050-7637481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 190

               
               
               Conread position:245-672
               
               
               Cow position:chr19:39576389-39576815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 76

               
               
               Conread position:246-454
               
               
               Cow position:chr19:52728795-52728587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):168, 82

               
               
               Conread position:246-495
               
               
               Cow position:chr19:34757808-34758067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 199

               
               
               Conread position:246-594
               
               
               Cow position:chr19:38500340-38499997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 68

               
               
               Conread position:246-600
               
               
               Cow position:chr19:32505924-32506291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 230

               
               
               Conread position:246-604
               
               
               Cow position:chr19:47859130-47859492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:262
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):68, 23

               
               
               Conread position:246-672
               
               
               Cow position:chr19:38339791-38340221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 37

               
               
               Conread position:246-673
               
               
               Cow position:chr19:12601986-12601566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:297
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):199, 63

               
               
               Conread position:246-675
               
               
               Cow position:chr19:39751655-39751233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 73

               
               
               Conread position:249-422
               
               
               Cow position:chr19:41343497-41343325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):123, 36

               
               
               Conread position:249-431
               
               
               Cow position:chr19:39585923-39586110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):79, 170

               
               
               Conread position:249-673
               
               
               Cow position:chr19:15067828-15068239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 51

               
               
               Conread position:249-674
               
               
               Cow position:chr19:26975890-26976295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 71

               
               
               Conread position:250-365
               
               
               Cow position:chr19:10177757-10177643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:91
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:250-455
               
               
               Cow position:chr19:6854106-6854306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):165, 25

               
               
               Conread position:250-469
               
               
               Cow position:chr19:24956063-24956278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):66, 23

               
               
               Conread position:250-671
               
               
               Cow position:chr19:13130044-13129638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 45

               
               
               Conread position:251-431
               
               
               Cow position:chr19:5521979-5522159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):95, 73

               
               
               Conread position:251-517
               
               
               Cow position:chr19:35870966-35870704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):95, 83

               
               
               Conread position:251-535
               
               
               Cow position:chr19:43190108-43189820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):75, 189

               
               
               Conread position:251-605
               
               
               Cow position:chr19:25526458-25526103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 34

               
               
               Conread position:251-637
               
               
               Cow position:chr19:16621179-16621565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 82

               
               
               Conread position:251-674
               
               
               Cow position:chr19:56149884-56150315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 87

               
               
               Conread position:252-466
               
               
               Cow position:chr19:9390964-9391189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):62, 181

               
               
               Conread position:252-495
               
               
               Cow position:chr19:34608021-34608264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):77, 156

               
               
               Conread position:252-675
               
               
               Cow position:chr19:55590413-55589984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 174

               
               
               Conread position:253-411
               
               
               Cow position:chr19:10554127-10554280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:253-596
               
               
               Cow position:chr19:47453608-47453262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 84

               
               
               Conread position:253-673
               
               
               Cow position:chr19:10213845-10213425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 75

               
               
               Conread position:253-673
               
               
               Cow position:chr19:20935930-20935510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 75

               
               
               Conread position:254-420
               
               
               Cow position:chr19:12469638-12469799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:254-430
               
               
               Cow position:chr19:18984331-18984148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):67, 173

               
               
               Conread position:254-469
               
               
               Cow position:chr19:2965727-2965501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):46, 31

               
               
               Conread position:254-506
               
               
               Cow position:chr19:13488330-13488584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):160, 66

               
               
               Conread position:254-506
               
               
               Cow position:chr19:25410678-25410922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):230, 61

               
               
               Conread position:254-528
               
               
               Cow position:chr19:42517078-42517357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:205
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):83, 179

               
               
               Conread position:254-587
               
               
               Cow position:chr19:21817142-21816798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 104

               
               
               Conread position:254-672
               
               
               Cow position:chr19:21378290-21378710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 83

               
               
               Conread position:254-673
               
               
               Cow position:chr19:14472602-14473024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:289
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):72, 99

               
               
               Conread position:257-422
               
               
               Cow position:chr19:20543799-20543957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):161, 70

               
               
               Conread position:257-422
               
               
               Cow position:chr19:35444331-35444500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:257-455
               
               
               Cow position:chr19:38021615-38021417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):71, 109

               
               
               Conread position:257-472
               
               
               Cow position:chr19:33988242-33988024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:167
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):161, 130

               
               
               Conread position:257-499
               
               
               Cow position:chr19:33913703-33913452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):53, 80

               
               
               Conread position:257-541
               
               
               Cow position:chr19:25763278-25762996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):216, 23

               
               
               Conread position:257-555
               
               
               Cow position:chr19:18826387-18826687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):78, 106

               
               
               Conread position:257-673
               
               
               Cow position:chr19:41585145-41584729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 181

               
               
               Conread position:258-407
               
               
               Cow position:chr19:24224506-24224362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:258-442
               
               
               Cow position:chr19:19916251-19916434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):160, 62

               
               
               Conread position:258-461
               
               
               Cow position:chr19:19460608-19460408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):115, 61

               
               
               Conread position:258-504
               
               
               Cow position:chr19:28447612-28447363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):15, 71

               
               
               Conread position:258-535
               
               
               Cow position:chr19:23394957-23394678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):76, 87

               
               
               Conread position:258-670
               
               
               Cow position:chr19:39103841-39104254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 89

               
               
               Conread position:259-540
               
               
               Cow position:chr19:10929617-10929328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):71, 128

               
               
               Conread position:259-673
               
               
               Cow position:chr19:34955542-34955943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 38

               
               
               Conread position:261-481
               
               
               Cow position:chr19:39613003-39613219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):158, 49

               
               
               Conread position:261-673
               
               
               Cow position:chr19:39057417-39056999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 180

               
               
               Conread position:262-566
               
               
               Cow position:chr19:7741433-7741748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):18, 67

               
               
               Conread position:263-585
               
               
               Cow position:chr19:54121432-54121118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):154, 81

               
               
               Conread position:267-663
               
               
               Cow position:chr19:1664020-1664430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 175

               
               
               Conread position:269-671
               
               
               Cow position:chr19:21065926-21065532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:288
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):65, 17

               
               
               Conread position:271-616
               
               
               Cow position:chr19:10242727-10242395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):257, 8

               
               
               Conread position:272-673
               
               
               Cow position:chr19:10545548-10545954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 64

               
               
               Conread position:273-673
               
               
               Cow position:chr19:32457801-32457396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 118

               
               
               Conread position:275-583
               
               
               Cow position:chr19:43202835-43203149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):8, 13

               
               
               Conread position:276-675
               
               
               Cow position:chr19:44143785-44144156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:280
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):136, 44

               
               
               Conread position:279-535
               
               
               Cow position:chr19:47987008-47986748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:199
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):137, 43

               
               
               Conread position:279-673
               
               
               Cow position:chr19:23786327-23785943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 40

               
               
               Conread position:286-472
               
               
               Cow position:chr19:15362553-15362745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):66, 46

               
               
               Conread position:286-482
               
               
               Cow position:chr19:28135707-28135511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):23, 13

               
               
               Conread position:289-469
               
               
               Cow position:chr19:24253160-24253340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):125, 21

               
               
               Conread position:292-546
               
               
               Cow position:chr19:34819047-34819308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):25, 43

               
               
               Conread position:293-673
               
               
               Cow position:chr19:8375170-8375547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 12

               
               
               Conread position:294-652
               
               
               Cow position:chr19:11565019-11565376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:251
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):93, 40

               
               
               Conread position:298-673
               
               
               Cow position:chr19:19919331-19919707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 35

               
               
               Conread position:301-520
               
               
               Cow position:chr19:41695532-41695758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):114, 123

               
               
               Conread position:301-539
               
               
               Cow position:chr19:39648948-39649186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):118, 32

               
               
               Conread position:301-673
               
               
               Cow position:chr19:3496043-3496420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:261
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):9, 18

               
               
               Conread position:302-574
               
               
               Cow position:chr19:52215289-52215020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):7, 32

               
               
               Conread position:302-641
               
               
               Cow position:chr19:33290612-33290268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:240
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):14, 23

               
               
               Conread position:302-667
               
               
               Cow position:chr19:1153337-1152982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:262
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):14, 121

               
               
               Conread position:303-437
               
               
               Cow position:chr19:24637356-24637222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):116, 30

               
               
               Conread position:303-673
               
               
               Cow position:chr19:55930045-55930421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:253
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):32, 61

               
               
               Conread position:308-673
               
               
               Cow position:chr19:35742283-35741912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 19

               
               
               Conread position:309-674
               
               
               Cow position:chr19:53542779-53543127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:251
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):135, 24

               
               
               Conread position:310-453
               
               
               Cow position:chr19:25696112-25696256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):108, 34

               
               
               Conread position:310-474
               
               
               Cow position:chr19:12705718-12705884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):16, 28

               
               
               Conread position:310-501
               
               
               Cow position:chr19:42236147-42235953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):125, 39

               
               
               Conread position:310-505
               
               
               Cow position:chr19:39781641-39781439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):13, 25

               
               
               Conread position:310-507
               
               
               Cow position:chr19:22816898-22817084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):114, 24

               
               
               Conread position:310-508
               
               
               Cow position:chr19:54915571-54915773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):28, 115

               
               
               Conread position:310-559
               
               
               Cow position:chr19:25035600-25035350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):28, 129

               
               
               Conread position:310-579
               
               
               Cow position:chr19:7404256-7404536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:206
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):109, 128

               
               
               Conread position:310-579
               
               
               Cow position:chr19:39485438-39485163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):108, 70

               
               
               Conread position:310-633
               
               
               Cow position:chr19:11424196-11424515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:240
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):19, 80

               
               
               Conread position:310-645
               
               
               Cow position:chr19:34001327-34000992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 125

               
               
               Conread position:310-665
               
               
               Cow position:chr19:12711756-12712118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:251
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):114, 27

               
               
               Conread position:310-673
               
               
               Cow position:chr19:17796015-17795650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 23

               
               
               Conread position:310-674
               
               
               Cow position:chr19:2207670-2208023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 79

               
               
               Conread position:310-674
               
               
               Cow position:chr19:23222749-23222388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 23

               
               
               Conread position:310-772
               
               
               Cow position:chr19:41817498-41817941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 34

               
               
               Conread position:311-586
               
               
               Cow position:chr19:25807189-25807465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):173, 16

               
               
               Conread position:311-616
               
               
               Cow position:chr19:7884697-7884389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 23

               
               
               Conread position:311-637
               
               
               Cow position:chr19:43292172-43291838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):77, 22

               
               
               Conread position:311-663
               
               
               Cow position:chr19:25652641-25652998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 102

               
               
               Conread position:311-670
               
               
               Cow position:chr19:21335477-21335859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 16

               
               
               Conread position:312-527
               
               
               Cow position:chr19:16104961-16105181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):19, 127

               
               
               Conread position:312-673
               
               
               Cow position:chr19:6049557-6049907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:251
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):14, 104

               
               
               Conread position:313-578
               
               
               Cow position:chr19:33237290-33237021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:206
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):102, 20

               
               
               Conread position:313-613
               
               
               Cow position:chr19:6849077-6849390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):22, 127

               
               
               Conread position:313-652
               
               
               Cow position:chr19:22134036-22134370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 20

               
               
               Conread position:313-672
               
               
               Cow position:chr19:6516386-6516015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 113

               
               
               Conread position:315-462
               
               
               Cow position:chr19:7675348-7675200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):100, 19

               
               
               Conread position:315-662
               
               
               Cow position:chr19:9541787-9542132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 21

               
               
               Conread position:315-674
               
               
               Cow position:chr19:14593171-14592803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 124

               
               
               Conread position:316-593
               
               
               Cow position:chr19:15719505-15719787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:213
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):102, 21

               
               
               Conread position:316-668
               
               
               Cow position:chr19:34619916-34620269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 17

               
               
               Conread position:316-673
               
               
               Cow position:chr19:18786209-18786571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 17

               
               
               Conread position:318-673
               
               
               Cow position:chr19:43441279-43440917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 9

               
               
               Conread position:319-673
               
               
               Cow position:chr19:9583399-9583069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):96, 144

               
               
               Conread position:319-674
               
               
               Cow position:chr19:16693919-16694295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 216

               
               
               Conread position:320-586
               
               
               Cow position:chr19:4800852-4800580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:207
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):96, 165

               
               
               Conread position:320-674
               
               
               Cow position:chr19:24669269-24669615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 16

               
               
               Conread position:321-597
               
               
               Cow position:chr19:11443099-11442807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:218
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):73, 12

               
               
               Conread position:321-671
               
               
               Cow position:chr19:51185531-51185183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 35

               
               
               Conread position:321-673
               
               
               Cow position:chr19:36060046-36059686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 16

               
               
               Conread position:322-511
               
               
               Cow position:chr19:2223996-2224184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):147, 11

               
               
               Conread position:323-506
               
               
               Cow position:chr19:43647523-43647333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):47, 10

               
               
               Conread position:323-521
               
               
               Cow position:chr19:25853681-25853474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:323-674
               
               
               Cow position:chr19:8332409-8332047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 114

               
               
               Conread position:324-671
               
               
               Cow position:chr19:40450123-40449785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:254
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):95, 20

               
               
               Conread position:324-673
               
               
               Cow position:chr19:15862943-15863284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 93

               
               
               Conread position:327-673
               
               
               Cow position:chr19:4503323-4502974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 86

               
               
               Conread position:327-673
               
               
               Cow position:chr19:43418509-43418175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:248
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):50, 17

               
               
               Conread position:327-674
               
               
               Cow position:chr19:36461425-36461774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):16, 51

               
               
               Conread position:327-687
               
               
               Cow position:chr19:42206027-42205674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:257
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):14, 38

               
               
               Conread position:328-478
               
               
               Cow position:chr19:6154490-6154648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):90, 113

               
               
               Conread position:328-578
               
               
               Cow position:chr19:50682343-50682594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):91, 79

               
               
               Conread position:328-652
               
               
               Cow position:chr19:20984671-20984995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 110

               
               
               Conread position:329-666
               
               
               Cow position:chr19:5656023-5656349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 106

               
               
               Conread position:329-671
               
               
               Cow position:chr19:22798976-22799327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 199

               
               
               Conread position:329-673
               
               
               Cow position:chr19:31846449-31846788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 95

               
               
               Conread position:329-675
               
               
               Cow position:chr19:20670805-20671149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 109

               
               
               Conread position:330-553
               
               
               Cow position:chr19:39078686-39078467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):71, 84

               
               
               Conread position:331-571
               
               
               Cow position:chr19:30552116-30551880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):155, 88

               
               
               Conread position:336-527
               
               
               Cow position:chr19:3834367-3834176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):81, 110

               
               
               Conread position:336-673
               
               
               Cow position:chr19:30534022-30533695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 36

               
               
               Conread position:337-477
               
               
               Cow position:chr19:1853951-1854089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:337-660
               
               
               Cow position:chr19:36722402-36722091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 47

               
               
               Conread position:337-667
               
               
               Cow position:chr19:21363344-21363683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 98

               
               
               Conread position:337-672
               
               
               Cow position:chr19:20310546-20310875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 76

               
               
               Conread position:338-671
               
               
               Cow position:chr19:17273648-17273964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:250
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):192, 76

               
               
               Conread position:338-673
               
               
               Cow position:chr19:31595393-31595053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 81

               
               
               Conread position:339-561
               
               
               Cow position:chr19:13757342-13757114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):53, 17

               
               
               Conread position:340-467
               
               
               Cow position:chr19:39060607-39060732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:340-674
               
               
               Cow position:chr19:47118405-47118746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 80

               
               
               Conread position:348-576
               
               
               Cow position:chr19:11212316-11212554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):66, 87

               
               
               Conread position:349-673
               
               
               Cow position:chr19:2734531-2734206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 90

               
               
               Conread position:349-689
               
               
               Cow position:chr19:8033829-8033477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:244
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):65, 86

               
               
               Conread position:350-673
               
               
               Cow position:chr19:51400934-51401254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:231
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):129, 65

               
               
               Conread position:354-591
               
               
               Cow position:chr19:31536203-31535961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):65, 84

               
               
               Conread position:354-632
               
               
               Cow position:chr19:4328977-4329252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 64

               
               
               Conread position:360-673
               
               
               Cow position:chr19:25999688-25999386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:227
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):124, 72

               
               
               Conread position:363-605
               
               
               Cow position:chr19:10173048-10173298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:193
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):37, 53

               
               
               Conread position:364-673
               
               
               Cow position:chr19:7543480-7543176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:227
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):54, 71

               
               
               Conread position:367-643
               
               
               Cow position:chr19:8270537-8270823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):63, 106

               
               
               Conread position:367-672
               
               
               Cow position:chr19:4195778-4195483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):64, 52

               
               
               Conread position:367-675
               
               
               Cow position:chr19:23403581-23403892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:226
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):62, 108

               
               
               Conread position:367-675
               
               
               Cow position:chr19:31378548-31378857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):49, 101

               
               
               Conread position:368-628
               
               
               Cow position:chr19:12709748-12710019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:368-648
               
               
               Cow position:chr19:22039836-22039550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):62, 165

               
               
               Conread position:368-650
               
               
               Cow position:chr19:35846963-35846672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):24, 157

               
               
               Conread position:368-673
               
               
               Cow position:chr19:31824951-31825261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 39

               
               
               Conread position:368-675
               
               
               Cow position:chr19:53418701-53418363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:370-675
               
               
               Cow position:chr19:11534733-11534441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):157, 60

               
               
               Conread position:371-675
               
               
               Cow position:chr19:10964537-10964848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):112, 35

               
               
               Conread position:373-603
               
               
               Cow position:chr19:9395300-9395068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):56, 87

               
               
               Conread position:375-672
               
               
               Cow position:chr19:29070664-29070952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):44, 63

               
               
               Conread position:377-675
               
               
               Cow position:chr19:1505178-1504895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:217
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):96, 36

               
               
               Conread position:384-673
               
               
               Cow position:chr19:31874167-31873871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):35, 146

               
               
               Conread position:384-675
               
               
               Cow position:chr19:11171170-11171466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):35, 42

               
               
               Conread position:386-674
               
               
               Cow position:chr19:37646792-37647086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 51

               
               
               Conread position:395-673
               
               
               Cow position:chr19:10172036-10171755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 20

               
               
               Conread position:400-674
               
               
               Cow position:chr19:10232379-10232649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):19, 26

               
               
               Conread position:404-605
               
               
               Cow position:chr19:15442783-15442584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):123, 11

               
               
               Conread position:405-673
               
               
               Cow position:chr19:14928631-14928916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):19, 14

               
               
               Conread position:405-673
               
               
               Cow position:chr19:32451110-32450832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 33

               
               
               Conread position:417-559
               
               
               Cow position:chr19:4511503-4511651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):64, 18

               
               
               Conread position:417-586
               
               
               Cow position:chr19:35808126-35808295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):69, 18

               
               
               Conread position:417-673
               
               
               Cow position:chr19:4448553-4448288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):64, 18

               
               
               Conread position:417-673
               
               
               Cow position:chr19:46918860-46918595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 18

               
               
               Conread position:418-637
               
               
               Cow position:chr19:38723836-38724060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):66, 32

               
               
               Conread position:418-673
               
               
               Cow position:chr19:21092782-21092533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):6, 114

               
               
               Conread position:418-673
               
               
               Cow position:chr19:46822465-46822193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):112, 17

               
               
               Conread position:420-659
               
               
               Cow position:chr19:47727566-47727803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):62, 15

               
               
               Conread position:427-673
               
               
               Cow position:chr19:42726364-42726109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):8, 70

               
               
               Conread position:434-672
               
               
               Cow position:chr19:20693494-20693252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):37, 168

               
               
               Conread position:434-672
               
               
               Cow position:chr19:53645431-53645660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:182
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):113, 46

               
               
               Conread position:434-673
               
               
               Cow position:chr19:10286890-10286662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:434-673
               
               
               Cow position:chr19:33932154-33932387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):51, 87

               
               
               Conread position:436-665
               
               
               Cow position:chr19:2138112-2138343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):48, 83

               
               
               Conread position:436-673
               
               
               Cow position:chr19:38596610-38596369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):103, 33

               
               
               Conread position:436-673
               
               
               Cow position:chr19:55724707-55724945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):33, 85

               
               
               Conread position:436-675
               
               
               Cow position:chr19:10786376-10786607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):47, 25

               
               
               Conread position:438-592
               
               
               Cow position:chr19:1552225-1552062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:438-674
               
               
               Cow position:chr19:31763017-31762777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:180
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):103, 45

               
               
               Conread position:439-640
               
               
               Cow position:chr19:42746348-42746545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):45, 81

               
               
               Conread position:439-678
               
               
               Cow position:chr19:8211844-8212089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 84

               
               
               Conread position:440-633
               
               
               Cow position:chr19:6092755-6092559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):90, 39

               
               
               Conread position:441-675
               
               
               Cow position:chr19:419878-419629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):18, 219

               
               
               Conread position:441-675
               
               
               Cow position:chr19:7978575-7978806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):108, 19

               
               
               Conread position:441-675
               
               
               Cow position:chr19:24192370-24192156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:442-674
               
               
               Cow position:chr19:33307087-33306849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:457-667
               
               
               Cow position:chr19:10093261-10093056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):70, 24

               
               
               Conread position:470-652
               
               
               Cow position:chr19:23244563-23244745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):71, 127

               
               
               Conread position:473-675
               
               
               Cow position:chr19:54294632-54294831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):10, 48

               
               
               Conread position:483-673
               
               
               Cow position:chr19:2735025-2735224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):152, 98

               
               
               Conread position:483-687
               
               
               Cow position:chr19:48409455-48409254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):44, 35

               
               
               Conread position:485-672
               
               
               Cow position:chr19:53037210-53037399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):42, 35

               
               
               Conread position:151-584
               
               
               Cow position:chr2:16481575-16482009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:286
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):64, 11

               
               
               Conread position:162-330
               
               
               Cow position:chr2:59427913-59427744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):30, 24

               
               
               Conread position:162-399
               
               
               Cow position:chr2:73981921-73981675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):25, 46

               
               
               Conread position:162-466
               
               
               Cow position:chr2:49716814-49717114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):156, 32

               
               
               Conread position:162-492
               
               
               Cow position:chr2:44217617-44217962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):122, 21

               
               
               Conread position:162-691
               
               
               Cow position:chr2:9173022-9173514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:354
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):252, 33

               
               
               Conread position:189-674
               
               
               Cow position:chr2:75600965-75600476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 99

               
               
               Conread position:209-674
               
               
               Cow position:chr2:13582816-13582348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 56

               
               
               Conread position:221-673
               
               
               Cow position:chr2:46312656-46312216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 58

               
               
               Conread position:226-673
               
               
               Cow position:chr2:17966826-17967267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 61

               
               
               Conread position:229-464
               
               
               Cow position:chr2:40703456-40703690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):14, 60

               
               
               Conread position:230-675
               
               
               Cow position:chr2:38965822-38965383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 48

               
               
               Conread position:231-411
               
               
               Cow position:chr2:4207358-4207537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:231-464
               
               
               Cow position:chr2:49862866-49862630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):98, 22

               
               
               Conread position:231-650
               
               
               Cow position:chr2:39362462-39362873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:271
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):9, 203

               
               
               Conread position:232-675
               
               
               Cow position:chr2:16071194-16071632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:294
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):197, 20

               
               
               Conread position:233-468
               
               
               Cow position:chr2:46164291-46164528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):11, 102

               
               
               Conread position:233-495
               
               
               Cow position:chr2:21410438-21410160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:210
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):74, 212

               
               
               Conread position:233-525
               
               
               Cow position:chr2:80177389-80177675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:221
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):185, 76

               
               
               Conread position:233-675
               
               
               Cow position:chr2:17114533-17114972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 40

               
               
               Conread position:234-375
               
               
               Cow position:chr2:56021523-56021378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:234-381
               
               
               Cow position:chr2:46245252-46245400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):14, 93

               
               
               Conread position:234-387
               
               
               Cow position:chr2:617801-617951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:234-387
               
               
               Cow position:chr2:1205514-1205359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:234-387
               
               
               Cow position:chr2:67810833-67810987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):94, 18

               
               
               Conread position:234-387
               
               
               Cow position:chr2:69003253-69003103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):9, 47

               
               
               Conread position:234-391
               
               
               Cow position:chr2:31410573-31410418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):10, 90

               
               
               Conread position:234-412
               
               
               Cow position:chr2:65988301-65988128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:234-413
               
               
               Cow position:chr2:81294036-81293856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):94, 15

               
               
               Conread position:234-414
               
               
               Cow position:chr2:66629408-66629216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:234-417
               
               
               Cow position:chr2:46015765-46015946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):9, 87

               
               
               Conread position:234-426
               
               
               Cow position:chr2:1923674-1923869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):91, 120

               
               
               Conread position:234-426
               
               
               Cow position:chr2:45521825-45522019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):93, 18

               
               
               Conread position:234-431
               
               
               Cow position:chr2:5755094-5755284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:234-431
               
               
               Cow position:chr2:72541129-72541327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):159, 18

               
               
               Conread position:234-442
               
               
               Cow position:chr2:14884448-14884239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):91, 45

               
               
               Conread position:234-456
               
               
               Cow position:chr2:16847392-16847168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):85, 98

               
               
               Conread position:234-462
               
               
               Cow position:chr2:39095566-39095334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):17, 117

               
               
               Conread position:234-463
               
               
               Cow position:chr2:18236030-18236264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):36, 121

               
               
               Conread position:234-465
               
               
               Cow position:chr2:30161678-30161920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):92, 120

               
               
               Conread position:234-469
               
               
               Cow position:chr2:65059248-65059009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):115, 12

               
               
               Conread position:234-475
               
               
               Cow position:chr2:6304080-6304327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):79, 19

               
               
               Conread position:234-476
               
               
               Cow position:chr2:38954040-38953789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):61, 15

               
               
               Conread position:234-480
               
               
               Cow position:chr2:80961754-80962008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):92, 245

               
               
               Conread position:234-487
               
               
               Cow position:chr2:1335495-1335743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):9, 63

               
               
               Conread position:234-492
               
               
               Cow position:chr2:56003442-56003185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):83, 19

               
               
               Conread position:234-501
               
               
               Cow position:chr2:45138239-45138494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):189, 14

               
               
               Conread position:234-506
               
               
               Cow position:chr2:13672723-13672457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:209
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):184, 85

               
               
               Conread position:234-517
               
               
               Cow position:chr2:46967989-46968269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):10, 41

               
               
               Conread position:234-522
               
               
               Cow position:chr2:68328644-68328935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:209
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):92, 252

               
               
               Conread position:234-522
               
               
               Cow position:chr2:70847055-70847345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):108, 91

               
               
               Conread position:234-535
               
               
               Cow position:chr2:24218010-24218304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:224
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):111, 19

               
               
               Conread position:234-535
               
               
               Cow position:chr2:67576309-67576001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:208
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):67, 18

               
               
               Conread position:234-539
               
               
               Cow position:chr2:24859209-24858908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:228
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):189, 12

               
               
               Conread position:234-542
               
               
               Cow position:chr2:46057803-46058114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 103

               
               
               Conread position:234-557
               
               
               Cow position:chr2:24530571-24530256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 74

               
               
               Conread position:234-561
               
               
               Cow position:chr2:21049128-21049438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 15

               
               
               Conread position:234-574
               
               
               Cow position:chr2:19155979-19156324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):190, 15

               
               
               Conread position:234-605
               
               
               Cow position:chr2:46351576-46351935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 15

               
               
               Conread position:234-612
               
               
               Cow position:chr2:78249946-78249560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 15

               
               
               Conread position:234-641
               
               
               Cow position:chr2:40489010-40488609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 40

               
               
               Conread position:234-643
               
               
               Cow position:chr2:37615149-37614740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:275
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):92, 12

               
               
               Conread position:234-664
               
               
               Cow position:chr2:6160144-6160552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 12

               
               
               Conread position:234-669
               
               
               Cow position:chr2:45784956-45784501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 15

               
               
               Conread position:234-670
               
               
               Cow position:chr2:67480195-67479748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 236

               
               
               Conread position:234-671
               
               
               Cow position:chr2:276873-276464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:310
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):247, 15

               
               
               Conread position:234-671
               
               
               Cow position:chr2:6281816-6282245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:293
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):65, 44

               
               
               Conread position:234-671
               
               
               Cow position:chr2:45619190-45619627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):234, 19

               
               
               Conread position:234-673
               
               
               Cow position:chr2:15058855-15059302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 18

               
               
               Conread position:234-673
               
               
               Cow position:chr2:32264187-32264630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 18

               
               
               Conread position:234-673
               
               
               Cow position:chr2:43995139-43994700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 40

               
               
               Conread position:234-673
               
               
               Cow position:chr2:45574801-45575230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 73

               
               
               Conread position:234-674
               
               
               Cow position:chr2:31784137-31783709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 100

               
               
               Conread position:234-674
               
               
               Cow position:chr2:38658590-38659018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 15

               
               
               Conread position:234-675
               
               
               Cow position:chr2:33250880-33251311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 152

               
               
               Conread position:234-675
               
               
               Cow position:chr2:67302225-67301800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 18

               
               
               Conread position:234-676
               
               
               Cow position:chr2:33553970-33554396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 15

               
               
               Conread position:234-687
               
               
               Cow position:chr2:16514063-16513603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:310
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):77, 133

               
               
               Conread position:234-691
               
               
               Cow position:chr2:46188888-46189342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 100

               
               
               Conread position:234-693
               
               
               Cow position:chr2:23270724-23271185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:309
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):78, 15

               
               
               Conread position:235-382
               
               
               Cow position:chr2:45799720-45799870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):72, 17

               
               
               Conread position:235-385
               
               
               Cow position:chr2:1777664-1777818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:235-404
               
               
               Cow position:chr2:36937706-36937543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):8, 62

               
               
               Conread position:235-418
               
               
               Cow position:chr2:9416596-9416770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:235-422
               
               
               Cow position:chr2:50354139-50353962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):183, 72

               
               
               Conread position:235-426
               
               
               Cow position:chr2:19164763-19164952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):179, 17

               
               
               Conread position:235-454
               
               
               Cow position:chr2:12139336-12139567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:235-463
               
               
               Cow position:chr2:43591166-43591396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):8, 93

               
               
               Conread position:235-464
               
               
               Cow position:chr2:53491255-53491475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):113, 14

               
               
               Conread position:235-469
               
               
               Cow position:chr2:71486982-71486749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):183, 85

               
               
               Conread position:235-534
               
               
               Cow position:chr2:40410352-40410046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):50, 18

               
               
               Conread position:235-576
               
               
               Cow position:chr2:46136964-46137298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):8, 83

               
               
               Conread position:235-582
               
               
               Cow position:chr2:67745455-67745106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):83, 17

               
               
               Conread position:235-610
               
               
               Cow position:chr2:14218862-14218476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:271
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):8, 204

               
               
               Conread position:235-622
               
               
               Cow position:chr2:46342943-46343326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 51

               
               
               Conread position:235-627
               
               
               Cow position:chr2:45565908-45565511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 60

               
               
               Conread position:235-638
               
               
               Cow position:chr2:18997924-18997526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 86

               
               
               Conread position:235-672
               
               
               Cow position:chr2:22371749-22372180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 14

               
               
               Conread position:235-672
               
               
               Cow position:chr2:58074138-58074582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 100

               
               
               Conread position:235-672
               
               
               Cow position:chr2:75227410-75226966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 14

               
               
               Conread position:235-673
               
               
               Cow position:chr2:41452441-41451996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 196

               
               
               Conread position:235-674
               
               
               Cow position:chr2:21003375-21002951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 39

               
               
               Conread position:235-675
               
               
               Cow position:chr2:29343197-29343664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:298
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):96, 119

               
               
               Conread position:236-412
               
               
               Cow position:chr2:11435491-11435316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):7, 93

               
               
               Conread position:236-422
               
               
               Cow position:chr2:19017659-19017470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):92, 13

               
               
               Conread position:236-422
               
               
               Cow position:chr2:44215705-44215522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):179, 16

               
               
               Conread position:236-449
               
               
               Cow position:chr2:85275294-85275504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):93, 13

               
               
               Conread position:236-464
               
               
               Cow position:chr2:60260780-60261016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):49, 205

               
               
               Conread position:236-478
               
               
               Cow position:chr2:18589328-18589570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):8, 55

               
               
               Conread position:236-580
               
               
               Cow position:chr2:11657094-11656751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 13

               
               
               Conread position:236-673
               
               
               Cow position:chr2:13369862-13369427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 16

               
               
               Conread position:236-673
               
               
               Cow position:chr2:59592561-59592980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 82

               
               
               Conread position:236-673
               
               
               Cow position:chr2:66959883-66959441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:306
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):65, 16

               
               
               Conread position:236-674
               
               
               Cow position:chr2:47990625-47990204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 49

               
               
               Conread position:237-410
               
               
               Cow position:chr2:30127085-30127258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):89, 47

               
               
               Conread position:237-417
               
               
               Cow position:chr2:21171807-21171629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:237-422
               
               
               Cow position:chr2:13468420-13468234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):91, 15

               
               
               Conread position:237-422
               
               
               Cow position:chr2:66561833-66562022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:237-433
               
               
               Cow position:chr2:37891276-37891485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:237-435
               
               
               Cow position:chr2:22759770-22759973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):81, 15

               
               
               Conread position:237-467
               
               
               Cow position:chr2:44198085-44197855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):81, 188

               
               
               Conread position:237-495
               
               
               Cow position:chr2:15872133-15871881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):181, 12

               
               
               Conread position:237-528
               
               
               Cow position:chr2:46614611-46614315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):20, 196

               
               
               Conread position:237-539
               
               
               Cow position:chr2:44007634-44007319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):13, 27

               
               
               Conread position:237-542
               
               
               Cow position:chr2:29928266-29927949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):89, 16

               
               
               Conread position:237-586
               
               
               Cow position:chr2:69366919-69367282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):78, 53

               
               
               Conread position:237-590
               
               
               Cow position:chr2:86490440-86490776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:231
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):91, 24

               
               
               Conread position:237-663
               
               
               Cow position:chr2:40728564-40728134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:300
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):59, 101

               
               
               Conread position:237-669
               
               
               Cow position:chr2:41148079-41147642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:286
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):13, 315

               
               
               Conread position:237-672
               
               
               Cow position:chr2:49467833-49467384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 16

               
               
               Conread position:237-673
               
               
               Cow position:chr2:11599626-11599206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):276, 97

               
               
               Conread position:237-673
               
               
               Cow position:chr2:28726666-28726259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:289
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):55, 15

               
               
               Conread position:237-673
               
               
               Cow position:chr2:31749763-31750203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:296
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):89, 12

               
               
               Conread position:237-674
               
               
               Cow position:chr2:53650220-53649790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 40

               
               
               Conread position:237-674
               
               
               Cow position:chr2:62743805-62744243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 97

               
               
               Conread position:237-686
               
               
               Cow position:chr2:42608270-42607823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 96

               
               
               Conread position:237-686
               
               
               Cow position:chr2:84480296-84480768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 12

               
               
               Conread position:237-687
               
               
               Cow position:chr2:65269485-65269946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 131

               
               
               Conread position:238-402
               
               
               Cow position:chr2:27599299-27599459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):89, 16

               
               
               Conread position:238-411
               
               
               Cow position:chr2:43139452-43139625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):87, 15

               
               
               Conread position:238-419
               
               
               Cow position:chr2:42897871-42897687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):80, 11

               
               
               Conread position:238-421
               
               
               Cow position:chr2:26574960-26574780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):177, 14

               
               
               Conread position:238-422
               
               
               Cow position:chr2:12873610-12873430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):179, 14

               
               
               Conread position:238-422
               
               
               Cow position:chr2:55004487-55004306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):88, 47

               
               
               Conread position:238-427
               
               
               Cow position:chr2:485780-485591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):9, 96

               
               
               Conread position:238-428
               
               
               Cow position:chr2:2031806-2031998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):90, 14

               
               
               Conread position:238-431
               
               
               Cow position:chr2:39059282-39059093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):14, 68

               
               
               Conread position:238-452
               
               
               Cow position:chr2:18615063-18615268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):180, 81

               
               
               Conread position:238-463
               
               
               Cow position:chr2:19058355-19058130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):158, 14

               
               
               Conread position:238-465
               
               
               Cow position:chr2:43990975-43990747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:176
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):12, 91

               
               
               Conread position:238-472
               
               
               Cow position:chr2:29682047-29681806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):11, 143

               
               
               Conread position:238-492
               
               
               Cow position:chr2:47977841-47978097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):80, 8

               
               
               Conread position:238-528
               
               
               Cow position:chr2:61815600-61815885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):186, 11

               
               
               Conread position:238-539
               
               
               Cow position:chr2:12682454-12682758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:216
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):22, 14

               
               
               Conread position:238-539
               
               
               Cow position:chr2:48634849-48635144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):94, 14

               
               
               Conread position:238-540
               
               
               Cow position:chr2:8843621-8843928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):88, 9

               
               
               Conread position:238-584
               
               
               Cow position:chr2:54968211-54967857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 9

               
               
               Conread position:238-592
               
               
               Cow position:chr2:46242378-46242745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:238
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):87, 14

               
               
               Conread position:238-605
               
               
               Cow position:chr2:66149519-66149144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 48

               
               
               Conread position:238-610
               
               
               Cow position:chr2:56937879-56937509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:266
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):100, 14

               
               
               Conread position:238-649
               
               
               Cow position:chr2:44051514-44051093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 178

               
               
               Conread position:238-663
               
               
               Cow position:chr2:41915224-41915658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:290
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):80, 176

               
               
               Conread position:238-664
               
               
               Cow position:chr2:33531741-33532173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:282
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):90, 288

               
               
               Conread position:238-670
               
               
               Cow position:chr2:42183569-42183136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 47

               
               
               Conread position:238-670
               
               
               Cow position:chr2:44229503-44229921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):242, 18

               
               
               Conread position:238-671
               
               
               Cow position:chr2:55278382-55278832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:306
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):59, 14

               
               
               Conread position:238-671
               
               
               Cow position:chr2:69250465-69250909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 8

               
               
               Conread position:238-672
               
               
               Cow position:chr2:16428195-16428634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 98

               
               
               Conread position:238-672
               
               
               Cow position:chr2:38662493-38662909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 14

               
               
               Conread position:238-672
               
               
               Cow position:chr2:76562326-76561879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 213

               
               
               Conread position:238-673
               
               
               Cow position:chr2:29801942-29802341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:238-673
               
               
               Cow position:chr2:32048682-32048254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 21

               
               
               Conread position:238-673
               
               
               Cow position:chr2:43474383-43473956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 15

               
               
               Conread position:238-673
               
               
               Cow position:chr2:74249017-74249460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 247

               
               
               Conread position:238-674
               
               
               Cow position:chr2:82957884-82957439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:298
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):71, 14

               
               
               Conread position:238-675
               
               
               Cow position:chr2:36631155-36630733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:286
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):191, 47

               
               
               Conread position:238-675
               
               
               Cow position:chr2:56846951-56846516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 89

               
               
               Conread position:238-675
               
               
               Cow position:chr2:84997516-84997079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:289
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):101, 69

               
               
               Conread position:238-687
               
               
               Cow position:chr2:38259251-38259704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:306
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):45, 14

               
               
               Conread position:239-387
               
               
               Cow position:chr2:74012865-74013016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):80, 121

               
               
               Conread position:239-409
               
               
               Cow position:chr2:28873094-28872925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:239-417
               
               
               Cow position:chr2:18243737-18243563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:239-417
               
               
               Cow position:chr2:38619234-38619411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):80, 40

               
               
               Conread position:239-422
               
               
               Cow position:chr2:65603437-65603616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):137, 13

               
               
               Conread position:239-423
               
               
               Cow position:chr2:81913202-81913018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):88, 126

               
               
               Conread position:239-427
               
               
               Cow position:chr2:26694813-26694622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):78, 119

               
               
               Conread position:239-432
               
               
               Cow position:chr2:44313513-44313707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):80, 175

               
               
               Conread position:239-437
               
               
               Cow position:chr2:60181826-60182025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):79, 115

               
               
               Conread position:239-456
               
               
               Cow position:chr2:56837446-56837672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:239-464
               
               
               Cow position:chr2:14848051-14847842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:239-467
               
               
               Cow position:chr2:32988773-32988538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):83, 200

               
               
               Conread position:239-470
               
               
               Cow position:chr2:38837311-38837547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):87, 121

               
               
               Conread position:239-504
               
               
               Cow position:chr2:41462222-41462492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):175, 95

               
               
               Conread position:239-517
               
               
               Cow position:chr2:22677398-22677114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:208
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):61, 46

               
               
               Conread position:239-521
               
               
               Cow position:chr2:18233225-18232936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):96, 119

               
               
               Conread position:239-526
               
               
               Cow position:chr2:39371613-39371333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):190, 34

               
               
               Conread position:239-543
               
               
               Cow position:chr2:15348599-15348288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:226
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):87, 199

               
               
               Conread position:239-545
               
               
               Cow position:chr2:40750147-40750462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):85, 69

               
               
               Conread position:239-558
               
               
               Cow position:chr2:10505409-10505746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:247
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):87, 46

               
               
               Conread position:239-577
               
               
               Cow position:chr2:33471794-33472127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):165, 80

               
               
               Conread position:239-579
               
               
               Cow position:chr2:13036326-13035971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):56, 126

               
               
               Conread position:239-586
               
               
               Cow position:chr2:43131301-43130965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:239
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):87, 125

               
               
               Conread position:239-600
               
               
               Cow position:chr2:26170950-26170578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:259
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):94, 121

               
               
               Conread position:239-600
               
               
               Cow position:chr2:51097881-51098257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):99, 36

               
               
               Conread position:239-618
               
               
               Cow position:chr2:12686587-12686966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:265
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):22, 83

               
               
               Conread position:239-630
               
               
               Cow position:chr2:29122087-29121695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 93

               
               
               Conread position:239-630
               
               
               Cow position:chr2:71621846-71622243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 89

               
               
               Conread position:239-635
               
               
               Cow position:chr2:47152341-47152735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:291
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):8, 45

               
               
               Conread position:239-641
               
               
               Cow position:chr2:41019014-41019419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 46

               
               
               Conread position:239-645
               
               
               Cow position:chr2:23301931-23301541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:287
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):81, 19

               
               
               Conread position:239-659
               
               
               Cow position:chr2:41145521-41145090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 290

               
               
               Conread position:239-667
               
               
               Cow position:chr2:23713077-23712662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:292
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):87, 190

               
               
               Conread position:239-670
               
               
               Cow position:chr2:1304154-1303718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 39

               
               
               Conread position:239-670
               
               
               Cow position:chr2:46331269-46330825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 46

               
               
               Conread position:239-671
               
               
               Cow position:chr2:9767228-9767662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:297
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):92, 119

               
               
               Conread position:239-671
               
               
               Cow position:chr2:46033537-46033099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 39

               
               
               Conread position:239-672
               
               
               Cow position:chr2:44482468-44482879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):246, 35

               
               
               Conread position:239-673
               
               
               Cow position:chr2:13354883-13354441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 39

               
               
               Conread position:239-673
               
               
               Cow position:chr2:50766674-50766254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 35

               
               
               Conread position:239-673
               
               
               Cow position:chr2:69579473-69579915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 199

               
               
               Conread position:239-674
               
               
               Cow position:chr2:841359-840924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:296
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):94, 119

               
               
               Conread position:239-674
               
               
               Cow position:chr2:19211858-19212279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 52

               
               
               Conread position:239-674
               
               
               Cow position:chr2:33262427-33262849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 32

               
               
               Conread position:239-675
               
               
               Cow position:chr2:14826482-14826049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 244

               
               
               Conread position:239-675
               
               
               Cow position:chr2:41158159-41157727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:321
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):196, 34

               
               
               Conread position:239-675
               
               
               Cow position:chr2:41950217-41949787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:304
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):101, 133

               
               
               Conread position:239-675
               
               
               Cow position:chr2:76340445-76340895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:306
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):71, 124

               
               
               Conread position:240-381
               
               
               Cow position:chr2:33603586-33603447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:240-385
               
               
               Cow position:chr2:39274985-39274836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):74, 124

               
               
               Conread position:240-386
               
               
               Cow position:chr2:1036185-1036333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):72, 91

               
               
               Conread position:240-388
               
               
               Cow position:chr2:23494000-23493854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:240-395
               
               
               Cow position:chr2:82304149-82303998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:240-396
               
               
               Cow position:chr2:58336021-58336177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):86, 115

               
               
               Conread position:240-404
               
               
               Cow position:chr2:19842987-19842826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:240-405
               
               
               Cow position:chr2:3773124-3773290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:240-405
               
               
               Cow position:chr2:61681698-61681533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):90, 36

               
               
               Conread position:240-409
               
               
               Cow position:chr2:39483688-39483516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:240-409
               
               
               Cow position:chr2:64562735-64562906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:240-410
               
               
               Cow position:chr2:7882602-7882433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:240-412
               
               
               Cow position:chr2:47195168-47194991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):78, 92

               
               
               Conread position:240-413
               
               
               Cow position:chr2:85392041-85392210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:240-414
               
               
               Cow position:chr2:24669571-24669392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:240-417
               
               
               Cow position:chr2:7909017-7908842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):88, 36

               
               
               Conread position:240-421
               
               
               Cow position:chr2:6952667-6952488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):178, 57

               
               
               Conread position:240-421
               
               
               Cow position:chr2:39384468-39384639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:240-422
               
               
               Cow position:chr2:39363211-39363021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:240-422
               
               
               Cow position:chr2:56102132-56102310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:240-422
               
               
               Cow position:chr2:75637529-75637717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):67, 32

               
               
               Conread position:240-425
               
               
               Cow position:chr2:51825175-51824986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):45, 178

               
               
               Conread position:240-427
               
               
               Cow position:chr2:64465578-64465761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):175, 19

               
               
               Conread position:240-440
               
               
               Cow position:chr2:26361959-26361753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):84, 13

               
               
               Conread position:240-446
               
               
               Cow position:chr2:80848285-80848077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):86, 45

               
               
               Conread position:240-447
               
               
               Cow position:chr2:46053675-46053463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:240-451
               
               
               Cow position:chr2:8139122-8138910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):10, 71

               
               
               Conread position:240-452
               
               
               Cow position:chr2:5604722-5604513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):178, 33

               
               
               Conread position:240-452
               
               
               Cow position:chr2:85460124-85459919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:240-453
               
               
               Cow position:chr2:46317074-46316859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):88, 13

               
               
               Conread position:240-467
               
               
               Cow position:chr2:6311452-6311225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):178, 69

               
               
               Conread position:240-467
               
               
               Cow position:chr2:15219311-15219086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):69, 34

               
               
               Conread position:240-467
               
               
               Cow position:chr2:69109143-69109376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):45, 93

               
               
               Conread position:240-468
               
               
               Cow position:chr2:37155290-37155078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:240-468
               
               
               Cow position:chr2:37619708-37619942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):55, 102

               
               
               Conread position:240-468
               
               
               Cow position:chr2:39067697-39067476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):154, 67

               
               
               Conread position:240-468
               
               
               Cow position:chr2:46019414-46019652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):86, 188

               
               
               Conread position:240-471
               
               
               Cow position:chr2:77941471-77941699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):176, 79

               
               
               Conread position:240-473
               
               
               Cow position:chr2:16889855-16890086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):178, 68

               
               
               Conread position:240-475
               
               
               Cow position:chr2:15734622-15734380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:240-475
               
               
               Cow position:chr2:45510347-45510594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):10, 181

               
               
               Conread position:240-475
               
               
               Cow position:chr2:61561830-61562062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):68, 116

               
               
               Conread position:240-479
               
               
               Cow position:chr2:13013280-13013053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):176, 78

               
               
               Conread position:240-487
               
               
               Cow position:chr2:45567059-45567305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):148, 13

               
               
               Conread position:240-501
               
               
               Cow position:chr2:53500844-53501098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:200
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):176, 67

               
               
               Conread position:240-504
               
               
               Cow position:chr2:46124486-46124768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):60, 45

               
               
               Conread position:240-517
               
               
               Cow position:chr2:50449708-50449984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):179, 195

               
               
               Conread position:240-521
               
               
               Cow position:chr2:994170-994447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:213
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):178, 33

               
               
               Conread position:240-521
               
               
               Cow position:chr2:13062005-13062306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):14, 87

               
               
               Conread position:240-521
               
               
               Cow position:chr2:19502270-19502561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):10, 138

               
               
               Conread position:240-521
               
               
               Cow position:chr2:84564248-84564524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):179, 84

               
               
               Conread position:240-528
               
               
               Cow position:chr2:24602602-24602313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):86, 12

               
               
               Conread position:240-534
               
               
               Cow position:chr2:65036092-65036378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):32, 50

               
               
               Conread position:240-535
               
               
               Cow position:chr2:40257215-40257511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 80

               
               
               Conread position:240-535
               
               
               Cow position:chr2:60091234-60091524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):178, 63

               
               
               Conread position:240-538
               
               
               Cow position:chr2:19137689-19137992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 93

               
               
               Conread position:240-557
               
               
               Cow position:chr2:29735028-29734701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:244
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):67, 25

               
               
               Conread position:240-574
               
               
               Cow position:chr2:24594063-24593732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):240, 80

               
               
               Conread position:240-579
               
               
               Cow position:chr2:76861249-76861600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:248
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):67, 189

               
               
               Conread position:240-589
               
               
               Cow position:chr2:14634385-14634019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 94

               
               
               Conread position:240-594
               
               
               Cow position:chr2:58687136-58686778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 206

               
               
               Conread position:240-594
               
               
               Cow position:chr2:61137741-61137404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):178, 45

               
               
               Conread position:240-604
               
               
               Cow position:chr2:46052702-46052337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 99

               
               
               Conread position:240-604
               
               
               Cow position:chr2:79837520-79837880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:255
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):7, 46

               
               
               Conread position:240-605
               
               
               Cow position:chr2:46942152-46942531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:248
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):31, 80

               
               
               Conread position:240-610
               
               
               Cow position:chr2:992354-991988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 64

               
               
               Conread position:240-627
               
               
               Cow position:chr2:46135428-46135014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:263
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:240-630
               
               
               Cow position:chr2:827418-827802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:272
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):178, 37

               
               
               Conread position:240-630
               
               
               Cow position:chr2:40484302-40484712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:290
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):26, 199

               
               
               Conread position:240-643
               
               
               Cow position:chr2:46120443-46120841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 80

               
               
               Conread position:240-655
               
               
               Cow position:chr2:71437175-71437600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 51

               
               
               Conread position:240-656
               
               
               Cow position:chr2:21380201-21380620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 71

               
               
               Conread position:240-658
               
               
               Cow position:chr2:79759-80178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 87

               
               
               Conread position:240-669
               
               
               Cow position:chr2:13001998-13001577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 71

               
               
               Conread position:240-670
               
               
               Cow position:chr2:39068481-39068074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 36

               
               
               Conread position:240-671
               
               
               Cow position:chr2:2673732-2673290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 88

               
               
               Conread position:240-671
               
               
               Cow position:chr2:16514994-16514557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 164

               
               
               Conread position:240-671
               
               
               Cow position:chr2:39566494-39566911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:292
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):56, 89

               
               
               Conread position:240-672
               
               
               Cow position:chr2:6539018-6539472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 209

               
               
               Conread position:240-672
               
               
               Cow position:chr2:18621614-18621173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 62

               
               
               Conread position:240-672
               
               
               Cow position:chr2:43577577-43578030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 88

               
               
               Conread position:240-672
               
               
               Cow position:chr2:45935766-45936188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 45

               
               
               Conread position:240-673
               
               
               Cow position:chr2:6356163-6356621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 123

               
               
               Conread position:240-673
               
               
               Cow position:chr2:7194409-7193968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 13

               
               
               Conread position:240-673
               
               
               Cow position:chr2:9063469-9063036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 94

               
               
               Conread position:240-673
               
               
               Cow position:chr2:12949962-12950398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:297
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):87, 195

               
               
               Conread position:240-673
               
               
               Cow position:chr2:15250369-15249949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 46

               
               
               Conread position:240-673
               
               
               Cow position:chr2:16839839-16839399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:298
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):67, 28

               
               
               Conread position:240-673
               
               
               Cow position:chr2:19494416-19493979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 195

               
               
               Conread position:240-673
               
               
               Cow position:chr2:21382647-21383091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 196

               
               
               Conread position:240-673
               
               
               Cow position:chr2:24393490-24393923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 199

               
               
               Conread position:240-673
               
               
               Cow position:chr2:26500737-26501174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 79

               
               
               Conread position:240-673
               
               
               Cow position:chr2:32115264-32114831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):236, 34

               
               
               Conread position:240-673
               
               
               Cow position:chr2:39590457-39590021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 55

               
               
               Conread position:240-673
               
               
               Cow position:chr2:39663580-39663161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:307
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):80, 57

               
               
               Conread position:240-673
               
               
               Cow position:chr2:41087904-41088363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 67

               
               
               Conread position:240-673
               
               
               Cow position:chr2:42255631-42255199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 10

               
               
               Conread position:240-673
               
               
               Cow position:chr2:51799136-51799555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 70

               
               
               Conread position:240-673
               
               
               Cow position:chr2:65928639-65929074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:284
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):86, 12

               
               
               Conread position:240-673
               
               
               Cow position:chr2:67595815-67596246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 194

               
               
               Conread position:240-673
               
               
               Cow position:chr2:78116159-78116577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 12

               
               
               Conread position:240-673
               
               
               Cow position:chr2:82580734-82581165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 69

               
               
               Conread position:240-674
               
               
               Cow position:chr2:20947569-20947137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 10

               
               
               Conread position:240-674
               
               
               Cow position:chr2:30640389-30639955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:298
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):156, 66

               
               
               Conread position:240-674
               
               
               Cow position:chr2:41008092-41008500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:295
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):70, 103

               
               
               Conread position:240-674
               
               
               Cow position:chr2:70908132-70908551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 9

               
               
               Conread position:240-674
               
               
               Cow position:chr2:71624196-71624614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 84

               
               
               Conread position:240-675
               
               
               Cow position:chr2:45478400-45478830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 77

               
               
               Conread position:240-675
               
               
               Cow position:chr2:52332433-52332866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:302
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):93, 13

               
               
               Conread position:240-675
               
               
               Cow position:chr2:56350709-56351153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 378

               
               
               Conread position:240-677
               
               
               Cow position:chr2:7533579-7534013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 79

               
               
               Conread position:240-685
               
               
               Cow position:chr2:80275091-80275540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 95

               
               
               Conread position:241-369
               
               
               Cow position:chr2:55660924-55660799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:241-375
               
               
               Cow position:chr2:29806294-29806162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:241-375
               
               
               Cow position:chr2:39456311-39456178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:241-421
               
               
               Cow position:chr2:12186830-12186650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):6, 21

               
               
               Conread position:241-422
               
               
               Cow position:chr2:78256491-78256310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):66, 94

               
               
               Conread position:241-422
               
               
               Cow position:chr2:78379220-78379400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):59, 44

               
               
               Conread position:241-423
               
               
               Cow position:chr2:53653054-53652869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):85, 116

               
               
               Conread position:241-431
               
               
               Cow position:chr2:63568909-63568721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):174, 8

               
               
               Conread position:241-434
               
               
               Cow position:chr2:54931640-54931832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):87, 35

               
               
               Conread position:241-436
               
               
               Cow position:chr2:30384064-30384266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:241-441
               
               
               Cow position:chr2:21950173-21949973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):14, 33

               
               
               Conread position:241-447
               
               
               Cow position:chr2:72315611-72315819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):87, 114

               
               
               Conread position:241-452
               
               
               Cow position:chr2:1476609-1476398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):31, 82

               
               
               Conread position:241-452
               
               
               Cow position:chr2:3739640-3739857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:241-462
               
               
               Cow position:chr2:47879436-47879219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):173, 79

               
               
               Conread position:241-469
               
               
               Cow position:chr2:9543512-9543285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):72, 97

               
               
               Conread position:241-469
               
               
               Cow position:chr2:41007342-41007570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):126, 42

               
               
               Conread position:241-470
               
               
               Cow position:chr2:29394805-29395040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:241-471
               
               
               Cow position:chr2:16686738-16686523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:241-471
               
               
               Cow position:chr2:28330550-28330778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):173, 93

               
               
               Conread position:241-479
               
               
               Cow position:chr2:9725899-9726137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):85, 110

               
               
               Conread position:241-487
               
               
               Cow position:chr2:32488469-32488703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):40, 70

               
               
               Conread position:241-511
               
               
               Cow position:chr2:45597179-45596908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):165, 87

               
               
               Conread position:241-518
               
               
               Cow position:chr2:38646948-38647237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):66, 169

               
               
               Conread position:241-521
               
               
               Cow position:chr2:44022603-44022890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):75, 11

               
               
               Conread position:241-522
               
               
               Cow position:chr2:40597774-40597491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:216
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):11, 92

               
               
               Conread position:241-522
               
               
               Cow position:chr2:72309796-72310088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:212
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):39, 208

               
               
               Conread position:241-544
               
               
               Cow position:chr2:74964649-74964378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):174, 44

               
               
               Conread position:241-572
               
               
               Cow position:chr2:80770303-80769981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):150, 29

               
               
               Conread position:241-573
               
               
               Cow position:chr2:387575-387909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):166, 82

               
               
               Conread position:241-573
               
               
               Cow position:chr2:8821444-8821102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:237
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):62, 205

               
               
               Conread position:241-579
               
               
               Cow position:chr2:58153903-58153561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 9

               
               
               Conread position:241-592
               
               
               Cow position:chr2:38785401-38785760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 45

               
               
               Conread position:241-594
               
               
               Cow position:chr2:59992048-59992404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:246
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):85, 113

               
               
               Conread position:241-604
               
               
               Cow position:chr2:59886896-59886534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):175, 93

               
               
               Conread position:241-605
               
               
               Cow position:chr2:72003748-72004106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:238
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):75, 143

               
               
               Conread position:241-608
               
               
               Cow position:chr2:54883667-54883294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):85, 8

               
               
               Conread position:241-625
               
               
               Cow position:chr2:34749791-34750170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 21

               
               
               Conread position:241-644
               
               
               Cow position:chr2:1709168-1708780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):240, 86

               
               
               Conread position:241-673
               
               
               Cow position:chr2:26438527-26438959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 44

               
               
               Conread position:241-673
               
               
               Cow position:chr2:44931057-44931494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:300
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):87, 120

               
               
               Conread position:241-673
               
               
               Cow position:chr2:46746134-46745688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 9

               
               
               Conread position:241-673
               
               
               Cow position:chr2:49428585-49428154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:304
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):75, 126

               
               
               Conread position:241-673
               
               
               Cow position:chr2:55526573-55526995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 114

               
               
               Conread position:241-673
               
               
               Cow position:chr2:59396849-59397293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 152

               
               
               Conread position:241-673
               
               
               Cow position:chr2:63250212-63250624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 36

               
               
               Conread position:241-673
               
               
               Cow position:chr2:70896249-70895796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 192

               
               
               Conread position:241-674
               
               
               Cow position:chr2:24271415-24270991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 103

               
               
               Conread position:241-677
               
               
               Cow position:chr2:38362179-38362611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 32

               
               
               Conread position:241-687
               
               
               Cow position:chr2:64323438-64323003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 80

               
               
               Conread position:242-387
               
               
               Cow position:chr2:39187570-39187426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):8, 93

               
               
               Conread position:242-387
               
               
               Cow position:chr2:77140382-77140525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:242-387
               
               
               Cow position:chr2:84750907-84750764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:242-405
               
               
               Cow position:chr2:38884225-38884386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:242-411
               
               
               Cow position:chr2:1888476-1888637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:242-411
               
               
               Cow position:chr2:16481014-16481182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):90, 64

               
               
               Conread position:242-413
               
               
               Cow position:chr2:36124633-36124462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):86, 132

               
               
               Conread position:242-421
               
               
               Cow position:chr2:47019043-47018865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):74, 14

               
               
               Conread position:242-424
               
               
               Cow position:chr2:19025390-19025215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:242-429
               
               
               Cow position:chr2:12889627-12889822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):62, 181

               
               
               Conread position:242-468
               
               
               Cow position:chr2:64773601-64773357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):56, 12

               
               
               Conread position:242-500
               
               
               Cow position:chr2:46162152-46161893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 53

               
               
               Conread position:242-507
               
               
               Cow position:chr2:22042754-22042467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:215
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):78, 214

               
               
               Conread position:242-520
               
               
               Cow position:chr2:57733627-57733348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):103, 68

               
               
               Conread position:242-539
               
               
               Cow position:chr2:39229008-39228708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):59, 84

               
               
               Conread position:242-540
               
               
               Cow position:chr2:10628332-10628638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):85, 196

               
               
               Conread position:242-597
               
               
               Cow position:chr2:46129966-46130311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):285, 31

               
               
               Conread position:242-612
               
               
               Cow position:chr2:65587357-65586987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:259
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):5, 85

               
               
               Conread position:242-626
               
               
               Cow position:chr2:73544705-73545085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):231, 77

               
               
               Conread position:242-652
               
               
               Cow position:chr2:39514238-39513813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 56

               
               
               Conread position:242-670
               
               
               Cow position:chr2:36077560-36077113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 129

               
               
               Conread position:242-671
               
               
               Cow position:chr2:41248765-41248336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 78

               
               
               Conread position:242-672
               
               
               Cow position:chr2:18857957-18858367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:297
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):187, 39

               
               
               Conread position:242-672
               
               
               Cow position:chr2:51594971-51594532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 31

               
               
               Conread position:242-672
               
               
               Cow position:chr2:70674940-70674502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 165

               
               
               Conread position:242-673
               
               
               Cow position:chr2:1073721-1073297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 94

               
               
               Conread position:242-673
               
               
               Cow position:chr2:28820571-28820131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 288

               
               
               Conread position:242-673
               
               
               Cow position:chr2:31355899-31355469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 11

               
               
               Conread position:242-673
               
               
               Cow position:chr2:37009606-37009184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 82

               
               
               Conread position:242-673
               
               
               Cow position:chr2:45499003-45499431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 91

               
               
               Conread position:242-673
               
               
               Cow position:chr2:46227665-46227232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 48

               
               
               Conread position:242-673
               
               
               Cow position:chr2:47403411-47402971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:298
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):84, 112

               
               
               Conread position:242-674
               
               
               Cow position:chr2:13684890-13684470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 90

               
               
               Conread position:242-674
               
               
               Cow position:chr2:36137212-36136772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:291
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):84, 112

               
               
               Conread position:242-674
               
               
               Cow position:chr2:44065764-44065356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 73

               
               
               Conread position:242-674
               
               
               Cow position:chr2:52484765-52485216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 37

               
               
               Conread position:242-674
               
               
               Cow position:chr2:57776552-57776113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 189

               
               
               Conread position:242-675
               
               
               Cow position:chr2:36963721-36963297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 34

               
               
               Conread position:242-689
               
               
               Cow position:chr2:5300798-5300340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 115

               
               
               Conread position:243-433
               
               
               Cow position:chr2:46378593-46378784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:243-565
               
               
               Cow position:chr2:60691079-60690755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:237
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):132, 30

               
               
               Conread position:243-588
               
               
               Cow position:chr2:41040507-41040861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:253
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):5, 180

               
               
               Conread position:243-673
               
               
               Cow position:chr2:55632970-55632541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 42

               
               
               Conread position:245-439
               
               
               Cow position:chr2:13695041-13695240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):46, 94

               
               
               Conread position:245-465
               
               
               Cow position:chr2:24722080-24722296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):170, 29

               
               
               Conread position:245-468
               
               
               Cow position:chr2:15229734-15229497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):70, 184

               
               
               Conread position:245-473
               
               
               Cow position:chr2:11840836-11840596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):71, 192

               
               
               Conread position:245-540
               
               
               Cow position:chr2:45642296-45642591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 29

               
               
               Conread position:245-554
               
               
               Cow position:chr2:30351507-30351820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:226
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):64, 91

               
               
               Conread position:245-576
               
               
               Cow position:chr2:17805571-17805904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:236
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):64, 81

               
               
               Conread position:245-596
               
               
               Cow position:chr2:15298731-15298378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 64

               
               
               Conread position:245-596
               
               
               Cow position:chr2:46119571-46119922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 84

               
               
               Conread position:245-667
               
               
               Cow position:chr2:42192621-42192216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:283
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):174, 50

               
               
               Conread position:245-669
               
               
               Cow position:chr2:42801232-42800812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 68

               
               
               Conread position:245-670
               
               
               Cow position:chr2:66480003-66480413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 29

               
               
               Conread position:245-672
               
               
               Cow position:chr2:43624343-43624760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 62

               
               
               Conread position:245-673
               
               
               Cow position:chr2:14349975-14349563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:305
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):33, 125

               
               
               Conread position:245-673
               
               
               Cow position:chr2:51638730-51638313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):282, 67

               
               
               Conread position:245-673
               
               
               Cow position:chr2:73354003-73353556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 182

               
               
               Conread position:245-674
               
               
               Cow position:chr2:15674726-15674311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 41

               
               
               Conread position:245-675
               
               
               Cow position:chr2:73282380-73282794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:295
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):302, 72

               
               
               Conread position:245-679
               
               
               Cow position:chr2:777487-777936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 107

               
               
               Conread position:246-455
               
               
               Cow position:chr2:25922607-25922395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):82, 51

               
               
               Conread position:246-478
               
               
               Cow position:chr2:50913819-50914048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):92, 168

               
               
               Conread position:246-661
               
               
               Cow position:chr2:68970941-68970511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:295
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):73, 120

               
               
               Conread position:246-671
               
               
               Cow position:chr2:6039211-6038772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 108

               
               
               Conread position:246-673
               
               
               Cow position:chr2:37347980-37347565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:297
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):96, 77

               
               
               Conread position:246-673
               
               
               Cow position:chr2:44168259-44167848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 37

               
               
               Conread position:247-673
               
               
               Cow position:chr2:44170752-44170322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 86

               
               
               Conread position:249-410
               
               
               Cow position:chr2:47165637-47165798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):77, 136

               
               
               Conread position:249-452
               
               
               Cow position:chr2:51099781-51099987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):89, 187

               
               
               Conread position:249-475
               
               
               Cow position:chr2:38640511-38640288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):165, 71

               
               
               Conread position:249-622
               
               
               Cow position:chr2:17328937-17328566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 20

               
               
               Conread position:249-640
               
               
               Cow position:chr2:73359919-73360312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:273
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):56, 9

               
               
               Conread position:249-674
               
               
               Cow position:chr2:46202460-46202032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 105

               
               
               Conread position:249-674
               
               
               Cow position:chr2:54790475-54790043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 75

               
               
               Conread position:250-417
               
               
               Cow position:chr2:75462514-75462353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:250-539
               
               
               Cow position:chr2:33988115-33988413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:209
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):60, 223

               
               
               Conread position:250-574
               
               
               Cow position:chr2:39334682-39335004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 70

               
               
               Conread position:250-599
               
               
               Cow position:chr2:60910375-60910036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 41

               
               
               Conread position:250-633
               
               
               Cow position:chr2:16505278-16505671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 26

               
               
               Conread position:251-416
               
               
               Cow position:chr2:9062871-9062703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:251-459
               
               
               Cow position:chr2:46125948-46126154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):164, 83

               
               
               Conread position:251-539
               
               
               Cow position:chr2:67927601-67927895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):88, 282

               
               
               Conread position:251-586
               
               
               Cow position:chr2:58135198-58135543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:248
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):41, 80

               
               
               Conread position:251-605
               
               
               Cow position:chr2:47065303-47064950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 164

               
               
               Conread position:251-670
               
               
               Cow position:chr2:76313675-76314090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 108

               
               
               Conread position:251-674
               
               
               Cow position:chr2:39815105-39815522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 82

               
               
               Conread position:251-675
               
               
               Cow position:chr2:72528153-72527716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 109

               
               
               Conread position:252-481
               
               
               Cow position:chr2:50905512-50905751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):72, 191

               
               
               Conread position:252-579
               
               
               Cow position:chr2:17841801-17842119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):27, 106

               
               
               Conread position:252-596
               
               
               Cow position:chr2:28257666-28257300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:262
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):55, 117

               
               
               Conread position:252-652
               
               
               Cow position:chr2:19294779-19294388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 27

               
               
               Conread position:252-659
               
               
               Cow position:chr2:65902215-65901796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:276
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):116, 82

               
               
               Conread position:253-467
               
               
               Cow position:chr2:17492330-17492543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):163, 80

               
               
               Conread position:253-473
               
               
               Cow position:chr2:7453167-7453381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):165, 67

               
               
               Conread position:253-591
               
               
               Cow position:chr2:45542213-45542551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 67

               
               
               Conread position:253-605
               
               
               Cow position:chr2:42970295-42969935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:258
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):225, 56

               
               
               Conread position:253-659
               
               
               Cow position:chr2:1422540-1422149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 157

               
               
               Conread position:253-673
               
               
               Cow position:chr2:28710821-28711221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):166, 16

               
               
               Conread position:253-674
               
               
               Cow position:chr2:80116286-80115869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 96

               
               
               Conread position:254-395
               
               
               Cow position:chr2:14313605-14313462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):70, 83

               
               
               Conread position:254-422
               
               
               Cow position:chr2:47160136-47159968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):74, 31

               
               
               Conread position:254-459
               
               
               Cow position:chr2:86540966-86541171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):59, 142

               
               
               Conread position:254-466
               
               
               Cow position:chr2:78360598-78360383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):57, 97

               
               
               Conread position:254-468
               
               
               Cow position:chr2:16669658-16669440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):64, 99

               
               
               Conread position:254-482
               
               
               Cow position:chr2:39750304-39750072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):71, 132

               
               
               Conread position:254-521
               
               
               Cow position:chr2:29860199-29859928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 89

               
               
               Conread position:254-587
               
               
               Cow position:chr2:59819624-59819955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):160, 50

               
               
               Conread position:254-606
               
               
               Cow position:chr2:61962276-61962624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):63, 106

               
               
               Conread position:254-658
               
               
               Cow position:chr2:38795584-38795981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):276, 65

               
               
               Conread position:254-673
               
               
               Cow position:chr2:57939874-57939448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 185

               
               
               Conread position:254-673
               
               
               Cow position:chr2:64212365-64212796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 183

               
               
               Conread position:254-673
               
               
               Cow position:chr2:65932156-65931736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:292
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):23, 84

               
               
               Conread position:254-675
               
               
               Cow position:chr2:71922411-71921990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:282
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):94, 162

               
               
               Conread position:255-440
               
               
               Cow position:chr2:11217985-11217792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):66, 186

               
               
               Conread position:256-606
               
               
               Cow position:chr2:25448508-25448160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:253
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):158, 11

               
               
               Conread position:257-412
               
               
               Cow position:chr2:13328822-13328974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:257-422
               
               
               Cow position:chr2:9476251-9476417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):148, 23

               
               
               Conread position:257-423
               
               
               Cow position:chr2:1141661-1141501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):161, 56

               
               
               Conread position:257-444
               
               
               Cow position:chr2:56338851-56339032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):179, 16

               
               
               Conread position:257-467
               
               
               Cow position:chr2:63074679-63074879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):149, 50

               
               
               Conread position:257-477
               
               
               Cow position:chr2:1317697-1317920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):71, 116

               
               
               Conread position:257-495
               
               
               Cow position:chr2:65830153-65830390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):172, 65

               
               
               Conread position:257-503
               
               
               Cow position:chr2:10440013-10439772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):157, 16

               
               
               Conread position:257-535
               
               
               Cow position:chr2:69350383-69350664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 67

               
               
               Conread position:257-539
               
               
               Cow position:chr2:67386286-67386579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):68, 273

               
               
               Conread position:257-574
               
               
               Cow position:chr2:76762405-76762087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):54, 269

               
               
               Conread position:257-591
               
               
               Cow position:chr2:41622669-41622327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:245
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):43, 27

               
               
               Conread position:257-663
               
               
               Cow position:chr2:60462645-60463040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:279
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):184, 78

               
               
               Conread position:257-663
               
               
               Cow position:chr2:60468024-60468419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:281
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):184, 78

               
               
               Conread position:257-673
               
               
               Cow position:chr2:35948496-35948900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 77

               
               
               Conread position:257-673
               
               
               Cow position:chr2:46204704-46204274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:283
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):69, 95

               
               
               Conread position:257-674
               
               
               Cow position:chr2:43835375-43835799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 81

               
               
               Conread position:258-427
               
               
               Cow position:chr2:46110861-46111038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):67, 174

               
               
               Conread position:258-473
               
               
               Cow position:chr2:28301385-28301173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):159, 70

               
               
               Conread position:258-637
               
               
               Cow position:chr2:20791239-20791625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:269
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):61, 178

               
               
               Conread position:258-673
               
               
               Cow position:chr2:27173548-27173133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 64

               
               
               Conread position:258-673
               
               
               Cow position:chr2:47047570-47047987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:283
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):37, 96

               
               
               Conread position:258-673
               
               
               Cow position:chr2:77157163-77157588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 175

               
               
               Conread position:259-426
               
               
               Cow position:chr2:81232924-81233096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):67, 158

               
               
               Conread position:259-583
               
               
               Cow position:chr2:37973141-37973470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:216
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):60, 73

               
               
               Conread position:259-623
               
               
               Cow position:chr2:83410681-83410318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:263
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):90, 17

               
               
               Conread position:259-628
               
               
               Cow position:chr2:1762973-1762600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 11

               
               
               Conread position:259-673
               
               
               Cow position:chr2:50353071-50352630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 27

               
               
               Conread position:260-649
               
               
               Cow position:chr2:29160090-29159692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 177

               
               
               Conread position:260-671
               
               
               Cow position:chr2:69676346-69676767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:290
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):77, 108

               
               
               Conread position:260-672
               
               
               Cow position:chr2:17940103-17940521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 139

               
               
               Conread position:261-464
               
               
               Cow position:chr2:52466268-52466472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):65, 155

               
               
               Conread position:261-674
               
               
               Cow position:chr2:36575916-36575497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:295
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):79, 88

               
               
               Conread position:262-610
               
               
               Cow position:chr2:12802492-12802842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):55, 78

               
               
               Conread position:262-673
               
               
               Cow position:chr2:56828381-56828802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 122

               
               
               Conread position:262-687
               
               
               Cow position:chr2:49608771-49608339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:283
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):168, 91

               
               
               Conread position:264-673
               
               
               Cow position:chr2:50566115-50565692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 170

               
               
               Conread position:265-675
               
               
               Cow position:chr2:74354080-74353659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:279
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):68, 98

               
               
               Conread position:266-430
               
               
               Cow position:chr2:81493424-81493588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):151, 88

               
               
               Conread position:267-725
               
               
               Cow position:chr2:45535640-45535184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 67

               
               
               Conread position:269-446
               
               
               Cow position:chr2:80235178-80235355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):54, 154

               
               
               Conread position:270-531
               
               
               Cow position:chr2:39513644-39513373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):135, 27

               
               
               Conread position:272-409
               
               
               Cow position:chr2:48199265-48199401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:102
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:272-673
               
               
               Cow position:chr2:81388858-81388456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 36

               
               
               Conread position:275-557
               
               
               Cow position:chr2:64131588-64131300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:201
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):12, 147

               
               
               Conread position:275-634
               
               
               Cow position:chr2:43790267-43789910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 156

               
               
               Conread position:277-674
               
               
               Cow position:chr2:39501201-39500796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 43

               
               
               Conread position:279-494
               
               
               Cow position:chr2:11631689-11631472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):100, 54

               
               
               Conread position:279-601
               
               
               Cow position:chr2:31460173-31460496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):131, 54

               
               
               Conread position:279-675
               
               
               Cow position:chr2:20900297-20900705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 58

               
               
               Conread position:281-544
               
               
               Cow position:chr2:84498108-84497832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):34, 82

               
               
               Conread position:281-673
               
               
               Cow position:chr2:46262601-46262210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 16

               
               
               Conread position:292-672
               
               
               Cow position:chr2:23120621-23120990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 31

               
               
               Conread position:293-469
               
               
               Cow position:chr2:4445674-4445838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):125, 9

               
               
               Conread position:295-469
               
               
               Cow position:chr2:60368464-60368287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):35, 125

               
               
               Conread position:297-674
               
               
               Cow position:chr2:50580508-50580133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 26

               
               
               Conread position:298-671
               
               
               Cow position:chr2:63273803-63274181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 7

               
               
               Conread position:298-686
               
               
               Cow position:chr2:70704399-70704006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 22

               
               
               Conread position:299-478
               
               
               Cow position:chr2:46733790-46733970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):27, 11

               
               
               Conread position:300-609
               
               
               Cow position:chr2:56248934-56248621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):47, 20

               
               
               Conread position:301-513
               
               
               Cow position:chr2:46383324-46383539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):28, 135

               
               
               Conread position:301-534
               
               
               Cow position:chr2:47015196-47015430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):172, 33

               
               
               Conread position:301-629
               
               
               Cow position:chr2:26851306-26850972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:245
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):27, 94

               
               
               Conread position:301-652
               
               
               Cow position:chr2:69823733-69823374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 137

               
               
               Conread position:301-669
               
               
               Cow position:chr2:4016710-4017094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:280
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):167, 23

               
               
               Conread position:301-672
               
               
               Cow position:chr2:192326-192694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 33

               
               
               Conread position:301-686
               
               
               Cow position:chr2:19286944-19287325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 6

               
               
               Conread position:301-692
               
               
               Cow position:chr2:6697359-6697747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 68

               
               
               Conread position:302-558
               
               
               Cow position:chr2:14734248-14733993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):14, 136

               
               
               Conread position:304-673
               
               
               Cow position:chr2:40402887-40403255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 212

               
               
               Conread position:305-673
               
               
               Cow position:chr2:62644730-62644366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 120

               
               
               Conread position:306-492
               
               
               Cow position:chr2:21671652-21671467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):28, 130

               
               
               Conread position:306-673
               
               
               Cow position:chr2:35136096-35135737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 136

               
               
               Conread position:307-412
               
               
               Cow position:chr2:46143263-46143159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:86
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:307-604
               
               
               Cow position:chr2:72407365-72407659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):108, 26

               
               
               Conread position:308-571
               
               
               Cow position:chr2:39598100-39597827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:205
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):18, 42

               
               
               Conread position:308-671
               
               
               Cow position:chr2:41955018-41954644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 25

               
               
               Conread position:308-672
               
               
               Cow position:chr2:41710986-41710646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 25

               
               
               Conread position:308-702
               
               
               Cow position:chr2:72183358-72183751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 127

               
               
               Conread position:310-430
               
               
               Cow position:chr2:44032271-44032390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:100
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):31, 19

               
               
               Conread position:310-502
               
               
               Cow position:chr2:55817876-55817673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):16, 130

               
               
               Conread position:310-528
               
               
               Cow position:chr2:48130752-48130533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):105, 49

               
               
               Conread position:310-535
               
               
               Cow position:chr2:39798375-39798143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):28, 126

               
               
               Conread position:310-539
               
               
               Cow position:chr2:44222955-44222722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:178
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):104, 23

               
               
               Conread position:310-539
               
               
               Cow position:chr2:46971256-46971019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):11, 24

               
               
               Conread position:310-573
               
               
               Cow position:chr2:6901907-6901640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):109, 23

               
               
               Conread position:310-574
               
               
               Cow position:chr2:44025508-44025233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):108, 23

               
               
               Conread position:310-576
               
               
               Cow position:chr2:54810725-54810995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):108, 26

               
               
               Conread position:310-594
               
               
               Cow position:chr2:38969380-38969667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):108, 13

               
               
               Conread position:310-596
               
               
               Cow position:chr2:44081568-44081275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 70

               
               
               Conread position:310-600
               
               
               Cow position:chr2:84970582-84970872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:216
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):114, 23

               
               
               Conread position:310-601
               
               
               Cow position:chr2:37373985-37373702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):29, 82

               
               
               Conread position:310-604
               
               
               Cow position:chr2:70781222-70780927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 36

               
               
               Conread position:310-625
               
               
               Cow position:chr2:52409167-52409467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):108, 12

               
               
               Conread position:310-630
               
               
               Cow position:chr2:1638735-1638407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 92

               
               
               Conread position:310-634
               
               
               Cow position:chr2:61421037-61421368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 23

               
               
               Conread position:310-673
               
               
               Cow position:chr2:44191610-44191249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 23

               
               
               Conread position:310-673
               
               
               Cow position:chr2:59952730-59953090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 24

               
               
               Conread position:310-673
               
               
               Cow position:chr2:68487875-68488243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 23

               
               
               Conread position:310-673
               
               
               Cow position:chr2:81927980-81927621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 111

               
               
               Conread position:310-674
               
               
               Cow position:chr2:24434147-24434525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 122

               
               
               Conread position:310-674
               
               
               Cow position:chr2:85339324-85339696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 127

               
               
               Conread position:310-674
               
               
               Cow position:chr2:85496204-85496549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:262
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):217, 17

               
               
               Conread position:310-675
               
               
               Cow position:chr2:46293920-46294273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 23

               
               
               Conread position:311-503
               
               
               Cow position:chr2:45721137-45721330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):106, 22

               
               
               Conread position:311-506
               
               
               Cow position:chr2:47443391-47443193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):102, 23

               
               
               Conread position:311-528
               
               
               Cow position:chr2:30911451-30911233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):107, 22

               
               
               Conread position:311-528
               
               
               Cow position:chr2:68870821-68870606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):156, 102

               
               
               Conread position:311-557
               
               
               Cow position:chr2:13935839-13935586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):15, 105

               
               
               Conread position:311-634
               
               
               Cow position:chr2:5130323-5130644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):10, 23

               
               
               Conread position:311-652
               
               
               Cow position:chr2:54971309-54970971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 22

               
               
               Conread position:311-669
               
               
               Cow position:chr2:39263619-39263257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:266
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):21, 97

               
               
               Conread position:311-672
               
               
               Cow position:chr2:46909306-46909671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 39

               
               
               Conread position:311-673
               
               
               Cow position:chr2:32402840-32403197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:268
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):107, 12

               
               
               Conread position:311-673
               
               
               Cow position:chr2:41185188-41184832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 13

               
               
               Conread position:311-675
               
               
               Cow position:chr2:48748595-48748961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):104, 128

               
               
               Conread position:313-514
               
               
               Cow position:chr2:24726388-24726186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):75, 21

               
               
               Conread position:313-517
               
               
               Cow position:chr2:60429408-60429201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):107, 14

               
               
               Conread position:313-539
               
               
               Cow position:chr2:12558403-12558629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):103, 34

               
               
               Conread position:313-557
               
               
               Cow position:chr2:55063007-55062766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):25, 77

               
               
               Conread position:313-572
               
               
               Cow position:chr2:39237541-39237281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):106, 66

               
               
               Conread position:313-574
               
               
               Cow position:chr2:34918257-34917983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):77, 24

               
               
               Conread position:313-671
               
               
               Cow position:chr2:45624142-45623793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 20

               
               
               Conread position:313-671
               
               
               Cow position:chr2:47645174-47644818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 21

               
               
               Conread position:313-673
               
               
               Cow position:chr2:31500129-31499767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 20

               
               
               Conread position:313-673
               
               
               Cow position:chr2:36424149-36423780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:256
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):105, 20

               
               
               Conread position:313-675
               
               
               Cow position:chr2:40880196-40879852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 20

               
               
               Conread position:313-675
               
               
               Cow position:chr2:42927323-42927687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 20

               
               
               Conread position:314-433
               
               
               Cow position:chr2:35208043-35207924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):104, 114

               
               
               Conread position:314-630
               
               
               Cow position:chr2:83184283-83183951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:242
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):24, 121

               
               
               Conread position:314-670
               
               
               Cow position:chr2:25597370-25597721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 22

               
               
               Conread position:314-674
               
               
               Cow position:chr2:53851563-53851197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 19

               
               
               Conread position:315-575
               
               
               Cow position:chr2:44005081-44004817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):109, 18

               
               
               Conread position:315-674
               
               
               Cow position:chr2:43596028-43596406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 18

               
               
               Conread position:315-676
               
               
               Cow position:chr2:30642537-30642907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 18

               
               
               Conread position:316-673
               
               
               Cow position:chr2:54789899-54789545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 11

               
               
               Conread position:317-606
               
               
               Cow position:chr2:30144836-30144551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):103, 19

               
               
               Conread position:317-673
               
               
               Cow position:chr2:45439558-45439221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:254
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):36, 16

               
               
               Conread position:317-674
               
               
               Cow position:chr2:39584572-39584215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 16

               
               
               Conread position:317-677
               
               
               Cow position:chr2:80963525-80963883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 96

               
               
               Conread position:318-557
               
               
               Cow position:chr2:62861709-62861467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):93, 16

               
               
               Conread position:318-671
               
               
               Cow position:chr2:46230640-46230999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 19

               
               
               Conread position:318-687
               
               
               Cow position:chr2:39941600-39941237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 97

               
               
               Conread position:319-504
               
               
               Cow position:chr2:16018110-16018296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):96, 8

               
               
               Conread position:319-673
               
               
               Cow position:chr2:17444921-17444560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 26

               
               
               Conread position:320-506
               
               
               Cow position:chr2:40466756-40466567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):97, 13

               
               
               Conread position:320-506
               
               
               Cow position:chr2:65890505-65890689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):164, 13

               
               
               Conread position:320-596
               
               
               Cow position:chr2:46247340-46247620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):94, 13

               
               
               Conread position:320-673
               
               
               Cow position:chr2:10655735-10656071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:258
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):99, 64

               
               
               Conread position:320-673
               
               
               Cow position:chr2:77241998-77241621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:283
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):66, 130

               
               
               Conread position:321-555
               
               
               Cow position:chr2:56056868-56056627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):90, 12

               
               
               Conread position:321-583
               
               
               Cow position:chr2:9369801-9370063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):67, 12

               
               
               Conread position:321-673
               
               
               Cow position:chr2:43123459-43123085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):98, 12

               
               
               Conread position:321-673
               
               
               Cow position:chr2:47073307-47072958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:259
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):163, 12

               
               
               Conread position:322-625
               
               
               Cow position:chr2:58057180-58056879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:214
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):148, 91

               
               
               Conread position:322-673
               
               
               Cow position:chr2:7524013-7524375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 11

               
               
               Conread position:323-522
               
               
               Cow position:chr2:61132935-61132727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):82, 91

               
               
               Conread position:323-603
               
               
               Cow position:chr2:17409889-17410159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):26, 31

               
               
               Conread position:323-629
               
               
               Cow position:chr2:70495387-70495081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 53

               
               
               Conread position:324-670
               
               
               Cow position:chr2:32446223-32446545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:242
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):95, 114

               
               
               Conread position:324-672
               
               
               Cow position:chr2:14089911-14089546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 107

               
               
               Conread position:324-672
               
               
               Cow position:chr2:39564471-39564120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 62

               
               
               Conread position:324-672
               
               
               Cow position:chr2:81348759-81349118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 154

               
               
               Conread position:324-673
               
               
               Cow position:chr2:549212-549549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 112

               
               
               Conread position:325-509
               
               
               Cow position:chr2:13645434-13645250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):92, 9

               
               
               Conread position:326-539
               
               
               Cow position:chr2:13271302-13271520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):12, 94

               
               
               Conread position:326-673
               
               
               Cow position:chr2:82262260-82262613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:250
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):89, 98

               
               
               Conread position:327-605
               
               
               Cow position:chr2:2589841-2590121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):108, 47

               
               
               Conread position:327-675
               
               
               Cow position:chr2:793760-793411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):23, 30

               
               
               Conread position:328-504
               
               
               Cow position:chr2:59427563-59427382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):90, 106

               
               
               Conread position:328-580
               
               
               Cow position:chr2:20362541-20362789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):102, 79

               
               
               Conread position:328-673
               
               
               Cow position:chr2:32416746-32417091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 108

               
               
               Conread position:328-673
               
               
               Cow position:chr2:38273663-38273309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:255
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):96, 29

               
               
               Conread position:328-675
               
               
               Cow position:chr2:36436320-36435965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 28

               
               
               Conread position:329-506
               
               
               Cow position:chr2:79138362-79138176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):29, 37

               
               
               Conread position:329-528
               
               
               Cow position:chr2:58035220-58035018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):88, 106

               
               
               Conread position:329-539
               
               
               Cow position:chr2:12051262-12051052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):139, 24

               
               
               Conread position:329-588
               
               
               Cow position:chr2:7573392-7573653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):85, 73

               
               
               Conread position:329-663
               
               
               Cow position:chr2:61485736-61485411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:239
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):90, 109

               
               
               Conread position:330-652
               
               
               Cow position:chr2:44232341-44232668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 72

               
               
               Conread position:330-669
               
               
               Cow position:chr2:46374831-46375160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:239
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):77, 63

               
               
               Conread position:332-667
               
               
               Cow position:chr2:48361682-48361339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 102

               
               
               Conread position:336-523
               
               
               Cow position:chr2:58479568-58479760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):78, 13

               
               
               Conread position:337-521
               
               
               Cow position:chr2:9098609-9098799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:337-528
               
               
               Cow position:chr2:47893812-47894006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):81, 102

               
               
               Conread position:337-528
               
               
               Cow position:chr2:78197973-78197785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):79, 135

               
               
               Conread position:337-566
               
               
               Cow position:chr2:15391883-15391656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):81, 97

               
               
               Conread position:337-595
               
               
               Cow position:chr2:43609013-43609265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):82, 101

               
               
               Conread position:337-667
               
               
               Cow position:chr2:46194886-46194567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:245
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):130, 53

               
               
               Conread position:337-671
               
               
               Cow position:chr2:36055694-36056029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):81, 98

               
               
               Conread position:337-671
               
               
               Cow position:chr2:50278127-50277788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 39

               
               
               Conread position:337-671
               
               
               Cow position:chr2:53532707-53533039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 101

               
               
               Conread position:337-673
               
               
               Cow position:chr2:47115814-47116147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 93

               
               
               Conread position:337-674
               
               
               Cow position:chr2:45912527-45912874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 102

               
               
               Conread position:339-605
               
               
               Cow position:chr2:8354845-8355112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:200
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):191, 93

               
               
               Conread position:339-672
               
               
               Cow position:chr2:48863888-48864214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:240
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):21, 93

               
               
               Conread position:340-671
               
               
               Cow position:chr2:38747761-38747444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:238
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):74, 91

               
               
               Conread position:340-672
               
               
               Cow position:chr2:64533434-64533109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:243
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):73, 38

               
               
               Conread position:341-678
               
               
               Cow position:chr2:70945505-70945162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 98

               
               
               Conread position:344-550
               
               
               Cow position:chr2:26880180-26879973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):135, 75

               
               
               Conread position:344-673
               
               
               Cow position:chr2:14555654-14555985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):122, 71

               
               
               Conread position:344-674
               
               
               Cow position:chr2:80324749-80325084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:249
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):87, 184

               
               
               Conread position:347-589
               
               
               Cow position:chr2:76764611-76764858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):30, 64

               
               
               Conread position:347-602
               
               
               Cow position:chr2:5999042-5998780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):68, 88

               
               
               Conread position:348-650
               
               
               Cow position:chr2:16564771-16564472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:225
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):179, 21

               
               
               Conread position:349-668
               
               
               Cow position:chr2:47808827-47808500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:240
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):69, 141

               
               
               Conread position:349-669
               
               
               Cow position:chr2:42226169-42226500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 93

               
               
               Conread position:349-674
               
               
               Cow position:chr2:52344844-52344526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 86

               
               
               Conread position:350-592
               
               
               Cow position:chr2:80865762-80866010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):68, 88

               
               
               Conread position:352-672
               
               
               Cow position:chr2:45666123-45665798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 86

               
               
               Conread position:352-673
               
               
               Cow position:chr2:988777-988457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 60

               
               
               Conread position:353-528
               
               
               Cow position:chr2:16492733-16492554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):61, 82

               
               
               Conread position:354-550
               
               
               Cow position:chr2:45281737-45281540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):63, 10

               
               
               Conread position:354-674
               
               
               Cow position:chr2:4383809-4384128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):70, 66

               
               
               Conread position:356-641
               
               
               Cow position:chr2:3308941-3309231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):63, 76

               
               
               Conread position:357-671
               
               
               Cow position:chr2:21416382-21416081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:231
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):50, 59

               
               
               Conread position:359-675
               
               
               Cow position:chr2:21644368-21644689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:224
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):93, 163

               
               
               Conread position:367-589
               
               
               Cow position:chr2:70660193-70660418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:367-675
               
               
               Cow position:chr2:20980462-20980164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):46, 15

               
               
               Conread position:367-675
               
               
               Cow position:chr2:36105345-36105034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:230
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):49, 158

               
               
               Conread position:368-617
               
               
               Cow position:chr2:86191429-86191678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):56, 31

               
               
               Conread position:368-673
               
               
               Cow position:chr2:70539298-70539610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):47, 104

               
               
               Conread position:369-673
               
               
               Cow position:chr2:10867819-10868126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):55, 13

               
               
               Conread position:371-674
               
               
               Cow position:chr2:29269143-29268826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:239
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):59, 225

               
               
               Conread position:373-605
               
               
               Cow position:chr2:82019058-82019294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):46, 66

               
               
               Conread position:373-675
               
               
               Cow position:chr2:1210696-1211004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):57, 16

               
               
               Conread position:373-675
               
               
               Cow position:chr2:64830907-64830619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):40, 53

               
               
               Conread position:379-673
               
               
               Cow position:chr2:57509465-57509179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):89, 36

               
               
               Conread position:380-673
               
               
               Cow position:chr2:36878156-36878452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 58

               
               
               Conread position:381-600
               
               
               Cow position:chr2:67313628-67313854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):38, 57

               
               
               Conread position:381-672
               
               
               Cow position:chr2:75561900-75561603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):33, 57

               
               
               Conread position:381-673
               
               
               Cow position:chr2:34535096-34535392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:223
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):38, 58

               
               
               Conread position:384-674
               
               
               Cow position:chr2:59905984-59906264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):35, 55

               
               
               Conread position:385-673
               
               
               Cow position:chr2:50445959-50445660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 54

               
               
               Conread position:385-673
               
               
               Cow position:chr2:61974854-61974561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 46

               
               
               Conread position:389-674
               
               
               Cow position:chr2:23493588-23493298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 47

               
               
               Conread position:390-673
               
               
               Cow position:chr2:11617147-11616865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):34, 29

               
               
               Conread position:390-673
               
               
               Cow position:chr2:45880724-45881001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):24, 50

               
               
               Conread position:390-675
               
               
               Cow position:chr2:1756093-1755801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):40, 139

               
               
               Conread position:391-673
               
               
               Cow position:chr2:69238330-69238039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):28, 81

               
               
               Conread position:393-675
               
               
               Cow position:chr2:28118550-28118264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):31, 26

               
               
               Conread position:396-673
               
               
               Cow position:chr2:25283857-25283576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):39, 76

               
               
               Conread position:396-673
               
               
               Cow position:chr2:25285601-25285320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):39, 76

               
               
               Conread position:397-663
               
               
               Cow position:chr2:36007544-36007806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):69, 39

               
               
               Conread position:399-609
               
               
               Cow position:chr2:19594765-19594543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):31, 130

               
               
               Conread position:401-671
               
               
               Cow position:chr2:14806300-14806569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):23, 18

               
               
               Conread position:401-674
               
               
               Cow position:chr2:51824964-51824692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 120

               
               
               Conread position:402-670
               
               
               Cow position:chr2:37920745-37921012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):16, 36

               
               
               Conread position:403-674
               
               
               Cow position:chr2:39662740-39662463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):72, 12

               
               
               Conread position:404-673
               
               
               Cow position:chr2:62978637-62978899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):20, 11

               
               
               Conread position:405-579
               
               
               Cow position:chr2:61181632-61181456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):19, 63

               
               
               Conread position:405-603
               
               
               Cow position:chr2:78220136-78219929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):19, 14

               
               
               Conread position:405-671
               
               
               Cow position:chr2:68716633-68716901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 31

               
               
               Conread position:410-689
               
               
               Cow position:chr2:39368854-39368565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:209
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):73, 26

               
               
               Conread position:411-673
               
               
               Cow position:chr2:66614882-66615153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 13

               
               
               Conread position:415-669
               
               
               Cow position:chr2:60922947-60923209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):50, 20

               
               
               Conread position:416-673
               
               
               Cow position:chr2:1364863-1365125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):8, 57

               
               
               Conread position:417-672
               
               
               Cow position:chr2:61187113-61187356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):110, 10

               
               
               Conread position:417-673
               
               
               Cow position:chr2:21284955-21284705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:199
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):110, 18

               
               
               Conread position:417-673
               
               
               Cow position:chr2:24469635-24469891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):66, 19

               
               
               Conread position:417-673
               
               
               Cow position:chr2:80839106-80839364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):49, 19

               
               
               Conread position:417-687
               
               
               Cow position:chr2:56102432-56102718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 19

               
               
               Conread position:418-579
               
               
               Cow position:chr2:75461906-75461745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):63, 17

               
               
               Conread position:418-690
               
               
               Cow position:chr2:25928478-25928201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):6, 22

               
               
               Conread position:419-633
               
               
               Cow position:chr2:46353466-46353688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):52, 20

               
               
               Conread position:419-671
               
               
               Cow position:chr2:46994736-46994987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):110, 12

               
               
               Conread position:421-623
               
               
               Cow position:chr2:21078600-21078391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:425-667
               
               
               Cow position:chr2:27076724-27076488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:185
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):102, 10

               
               
               Conread position:434-637
               
               
               Cow position:chr2:30586617-30586411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):42, 87

               
               
               Conread position:434-663
               
               
               Cow position:chr2:77378250-77378012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):96, 26

               
               
               Conread position:434-670
               
               
               Cow position:chr2:46020911-46020674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:184
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):93, 85

               
               
               Conread position:434-672
               
               
               Cow position:chr2:39384868-39385097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):96, 46

               
               
               Conread position:434-673
               
               
               Cow position:chr2:15653307-15653544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):102, 35

               
               
               Conread position:434-673
               
               
               Cow position:chr2:69770511-69770269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:186
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):35, 168

               
               
               Conread position:434-673
               
               
               Cow position:chr2:80797671-80797441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):93, 46

               
               
               Conread position:434-673
               
               
               Cow position:chr2:85246326-85246565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):93, 51

               
               
               Conread position:434-686
               
               
               Cow position:chr2:50777775-50777526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):50, 6

               
               
               Conread position:435-687
               
               
               Cow position:chr2:25964481-25964734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):46, 35

               
               
               Conread position:436-587
               
               
               Cow position:chr2:39058868-39058701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):31, 94

               
               
               Conread position:436-673
               
               
               Cow position:chr2:45311113-45311361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):33, 90

               
               
               Conread position:436-674
               
               
               Cow position:chr2:13467703-13467463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):44, 169

               
               
               Conread position:436-674
               
               
               Cow position:chr2:46170875-46171110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):76, 35

               
               
               Conread position:439-671
               
               
               Cow position:chr2:333101-333308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:439-673
               
               
               Cow position:chr2:1203686-1203447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:439-674
               
               
               Cow position:chr2:21355848-21356089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 30

               
               
               Conread position:440-675
               
               
               Cow position:chr2:52385916-52386157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):44, 82

               
               
               Conread position:440-675
               
               
               Cow position:chr2:74030986-74031225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):99, 14

               
               
               Conread position:442-671
               
               
               Cow position:chr2:13544022-13543793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):43, 27

               
               
               Conread position:445-673
               
               
               Cow position:chr2:22969139-22968914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):39, 58

               
               
               Conread position:445-675
               
               
               Cow position:chr2:6884220-6883991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):24, 84

               
               
               Conread position:447-597
               
               
               Cow position:chr2:45537442-45537597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):22, 34

               
               
               Conread position:451-680
               
               
               Cow position:chr2:45554303-45554076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):35, 17

               
               
               Conread position:454-667
               
               
               Cow position:chr2:48069412-48069629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:169
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):14, 27

               
               
               Conread position:456-672
               
               
               Cow position:chr2:42599918-42599695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):9, 70

               
               
               Conread position:463-672
               
               
               Cow position:chr2:11900409-11900197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:167
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):21, 60

               
               
               Conread position:466-675
               
               
               Cow position:chr2:68084486-68084278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):61, 5

               
               
               Conread position:467-635
               
               
               Cow position:chr2:17493347-17493519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):60, 53

               
               
               Conread position:468-672
               
               
               Cow position:chr2:78744675-78744467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):16, 52

               
               
               Conread position:473-675
               
               
               Cow position:chr2:73985050-73985258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:483-633
               
               
               Cow position:chr2:41443361-41443211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):58, 37

               
               
               Conread position:483-671
               
               
               Cow position:chr2:48617938-48617746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):44, 36

               
               
               Conread position:483-672
               
               
               Cow position:chr2:32406637-32406450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:153
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):45, 37

               
               
               Conread position:483-673
               
               
               Cow position:chr2:14396286-14396472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):12, 38

               
               
               Conread position:485-672
               
               
               Cow position:chr2:60956325-60956140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):42, 16

               
               
               Conread position:508-678
               
               
               Cow position:chr2:44032609-44032769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:163-473
               
               
               Cow position:chr20:24097318-24097010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:230
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):29, 20

               
               
               Conread position:215-447
               
               
               Cow position:chr20:19635910-19636141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):64, 11

               
               
               Conread position:226-535
               
               
               Cow position:chr20:7624001-7624300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:215
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):191, 93

               
               
               Conread position:230-628
               
               
               Cow position:chr20:4334284-4334667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 55

               
               
               Conread position:233-505
               
               
               Cow position:chr20:12126050-12126328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:200
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):92, 205

               
               
               Conread position:233-539
               
               
               Cow position:chr20:35193010-35192720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):184, 40

               
               
               Conread position:233-566
               
               
               Cow position:chr20:23540921-23541246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):109, 16

               
               
               Conread position:234-373
               
               
               Cow position:chr20:3502751-3502620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):9, 74

               
               
               Conread position:234-391
               
               
               Cow position:chr20:17524524-17524365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):84, 15

               
               
               Conread position:234-412
               
               
               Cow position:chr20:26387705-26387533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:234-413
               
               
               Cow position:chr20:297753-297936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):13, 175

               
               
               Conread position:234-417
               
               
               Cow position:chr20:34848153-34847973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:234-418
               
               
               Cow position:chr20:37609873-37609688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):92, 151

               
               
               Conread position:234-422
               
               
               Cow position:chr20:24883111-24883306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):92, 18

               
               
               Conread position:234-424
               
               
               Cow position:chr20:8442205-8442396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):57, 38

               
               
               Conread position:234-426
               
               
               Cow position:chr20:4891869-4892064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):95, 15

               
               
               Conread position:234-467
               
               
               Cow position:chr20:23590499-23590732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:234-528
               
               
               Cow position:chr20:4786782-4787059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):246, 61

               
               
               Conread position:234-545
               
               
               Cow position:chr20:16941033-16941353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 15

               
               
               Conread position:234-553
               
               
               Cow position:chr20:5078888-5078548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 212

               
               
               Conread position:234-579
               
               
               Cow position:chr20:18622823-18622480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:230
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):74, 12

               
               
               Conread position:234-582
               
               
               Cow position:chr20:23358244-23358570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):92, 155

               
               
               Conread position:234-605
               
               
               Cow position:chr20:398063-398430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:261
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):180, 15

               
               
               Conread position:234-655
               
               
               Cow position:chr20:2204435-2204839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:282
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):9, 96

               
               
               Conread position:234-672
               
               
               Cow position:chr20:14572126-14572547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 101

               
               
               Conread position:234-673
               
               
               Cow position:chr20:5702971-5702553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 15

               
               
               Conread position:234-673
               
               
               Cow position:chr20:12239442-12239872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 16

               
               
               Conread position:234-673
               
               
               Cow position:chr20:13493975-13493546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:305
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):171, 19

               
               
               Conread position:234-673
               
               
               Cow position:chr20:15548641-15549089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 34

               
               
               Conread position:234-673
               
               
               Cow position:chr20:32847592-32847161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 85

               
               
               Conread position:234-674
               
               
               Cow position:chr20:14620057-14620466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 16

               
               
               Conread position:234-674
               
               
               Cow position:chr20:20967570-20967147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 55

               
               
               Conread position:234-674
               
               
               Cow position:chr20:24070051-24069618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 15

               
               
               Conread position:234-687
               
               
               Cow position:chr20:13829509-13829057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 19

               
               
               Conread position:235-449
               
               
               Cow position:chr20:21291917-21291693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):19, 208

               
               
               Conread position:235-567
               
               
               Cow position:chr20:12205495-12205821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):234, 38

               
               
               Conread position:235-605
               
               
               Cow position:chr20:17470959-17470606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:252
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):65, 38

               
               
               Conread position:235-610
               
               
               Cow position:chr20:14917520-14917167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:260
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):8, 19

               
               
               Conread position:235-614
               
               
               Cow position:chr20:11838805-11838420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:250
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):58, 69

               
               
               Conread position:235-623
               
               
               Cow position:chr20:9266848-9267243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 67

               
               
               Conread position:235-633
               
               
               Cow position:chr20:34221731-34221322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 105

               
               
               Conread position:235-665
               
               
               Cow position:chr20:13876461-13876892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 18

               
               
               Conread position:235-673
               
               
               Cow position:chr20:34202891-34202455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 196

               
               
               Conread position:235-674
               
               
               Cow position:chr20:7658976-7659407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 128

               
               
               Conread position:236-431
               
               
               Cow position:chr20:15760319-15760522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):12, 138

               
               
               Conread position:236-559
               
               
               Cow position:chr20:5645023-5644705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):187, 13

               
               
               Conread position:236-616
               
               
               Cow position:chr20:20099355-20099732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:279
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):61, 13

               
               
               Conread position:236-673
               
               
               Cow position:chr20:38872751-38873204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:301
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):92, 117

               
               
               Conread position:237-410
               
               
               Cow position:chr20:4789614-4789777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:237-442
               
               
               Cow position:chr20:27315226-27315022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):11, 99

               
               
               Conread position:237-452
               
               
               Cow position:chr20:3564399-3564190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:237-499
               
               
               Cow position:chr20:42166542-42166800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):166, 52

               
               
               Conread position:237-517
               
               
               Cow position:chr20:34083967-34083684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:197
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):88, 15

               
               
               Conread position:237-673
               
               
               Cow position:chr20:4945003-4945437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 162

               
               
               Conread position:237-673
               
               
               Cow position:chr20:8556024-8556466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 12

               
               
               Conread position:237-673
               
               
               Cow position:chr20:23846417-23846864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 92

               
               
               Conread position:237-673
               
               
               Cow position:chr20:29845301-29844863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 12

               
               
               Conread position:237-674
               
               
               Cow position:chr20:5950393-5950826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 201

               
               
               Conread position:238-395
               
               
               Cow position:chr20:18500775-18500616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):88, 14

               
               
               Conread position:238-417
               
               
               Cow position:chr20:27323514-27323333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):88, 15

               
               
               Conread position:238-422
               
               
               Cow position:chr20:2798750-2798929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):90, 17

               
               
               Conread position:238-422
               
               
               Cow position:chr20:35589438-35589621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):97, 14

               
               
               Conread position:238-426
               
               
               Cow position:chr20:6473980-6473788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):88, 14

               
               
               Conread position:238-474
               
               
               Cow position:chr20:14490487-14490259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:238-519
               
               
               Cow position:chr20:25953512-25953228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):88, 14

               
               
               Conread position:238-528
               
               
               Cow position:chr20:23549002-23548700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):88, 14

               
               
               Conread position:238-531
               
               
               Cow position:chr20:20124786-20125077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:208
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):59, 14

               
               
               Conread position:238-592
               
               
               Cow position:chr20:28249428-28249068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):80, 14

               
               
               Conread position:238-672
               
               
               Cow position:chr20:10209053-10208611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 90

               
               
               Conread position:238-673
               
               
               Cow position:chr20:7441896-7442316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):290, 32

               
               
               Conread position:238-673
               
               
               Cow position:chr20:29755023-29754594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 15

               
               
               Conread position:238-673
               
               
               Cow position:chr20:35146260-35145817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:304
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):104, 69

               
               
               Conread position:238-675
               
               
               Cow position:chr20:4755589-4756019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 11

               
               
               Conread position:239-409
               
               
               Cow position:chr20:4931324-4931161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:239-418
               
               
               Cow position:chr20:37358104-37357921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):52, 59

               
               
               Conread position:239-421
               
               
               Cow position:chr20:5978599-5978783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):87, 10

               
               
               Conread position:239-422
               
               
               Cow position:chr20:35442037-35442221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):87, 10

               
               
               Conread position:239-426
               
               
               Cow position:chr20:37273238-37273056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):62, 45

               
               
               Conread position:239-427
               
               
               Cow position:chr20:7934523-7934341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):57, 46

               
               
               Conread position:239-451
               
               
               Cow position:chr20:17370000-17370220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):82, 120

               
               
               Conread position:239-463
               
               
               Cow position:chr20:25021676-25021447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):73, 145

               
               
               Conread position:239-528
               
               
               Cow position:chr20:39016624-39016922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:219
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):87, 238

               
               
               Conread position:239-539
               
               
               Cow position:chr20:20892431-20892725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):70, 13

               
               
               Conread position:239-543
               
               
               Cow position:chr20:16818663-16818353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:206
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):96, 34

               
               
               Conread position:239-548
               
               
               Cow position:chr20:11359394-11359694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 34

               
               
               Conread position:239-559
               
               
               Cow position:chr20:36741706-36741394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):90, 11

               
               
               Conread position:239-572
               
               
               Cow position:chr20:38090161-38089822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 188

               
               
               Conread position:239-610
               
               
               Cow position:chr20:32523708-32523332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):85, 99

               
               
               Conread position:239-628
               
               
               Cow position:chr20:41089547-41089941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 183

               
               
               Conread position:239-631
               
               
               Cow position:chr20:8308249-8307863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:275
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):61, 95

               
               
               Conread position:239-668
               
               
               Cow position:chr20:3141820-3141396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 34

               
               
               Conread position:239-671
               
               
               Cow position:chr20:17251964-17251518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 97

               
               
               Conread position:239-672
               
               
               Cow position:chr20:19328643-19328208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 122

               
               
               Conread position:239-673
               
               
               Cow position:chr20:34097703-34098150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 241

               
               
               Conread position:239-674
               
               
               Cow position:chr20:6054262-6054706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 46

               
               
               Conread position:239-674
               
               
               Cow position:chr20:8702685-8703100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 72

               
               
               Conread position:239-674
               
               
               Cow position:chr20:39325637-39325192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 38

               
               
               Conread position:239-675
               
               
               Cow position:chr20:13023257-13023672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):236, 169

               
               
               Conread position:239-675
               
               
               Cow position:chr20:28296543-28296096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 115

               
               
               Conread position:240-382
               
               
               Cow position:chr20:11368120-11368260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:240-385
               
               
               Cow position:chr20:34881159-34881298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:240-412
               
               
               Cow position:chr20:16977593-16977772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:240-417
               
               
               Cow position:chr20:19919575-19919749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):148, 12

               
               
               Conread position:240-420
               
               
               Cow position:chr20:38061529-38061703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):164, 66

               
               
               Conread position:240-422
               
               
               Cow position:chr20:2316183-2316364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):51, 70

               
               
               Conread position:240-422
               
               
               Cow position:chr20:5078521-5078333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):87, 44

               
               
               Conread position:240-422
               
               
               Cow position:chr20:38934823-38934994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):179, 9

               
               
               Conread position:240-427
               
               
               Cow position:chr20:12334575-12334391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):173, 45

               
               
               Conread position:240-431
               
               
               Cow position:chr20:11499247-11499062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:240-431
               
               
               Cow position:chr20:22923158-22922968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):175, 57

               
               
               Conread position:240-433
               
               
               Cow position:chr20:14755599-14755791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):177, 79

               
               
               Conread position:240-440
               
               
               Cow position:chr20:8021381-8021170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):78, 195

               
               
               Conread position:240-451
               
               
               Cow position:chr20:21941670-21941465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):179, 29

               
               
               Conread position:240-465
               
               
               Cow position:chr20:15766360-15766128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):48, 205

               
               
               Conread position:240-479
               
               
               Cow position:chr20:11101646-11101417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:240-535
               
               
               Cow position:chr20:9376706-9376415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):58, 44

               
               
               Conread position:240-556
               
               
               Cow position:chr20:38868865-38868565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):290, 34

               
               
               Conread position:240-573
               
               
               Cow position:chr20:22265024-22265341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):178, 15

               
               
               Conread position:240-577
               
               
               Cow position:chr20:18379621-18379282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 87

               
               
               Conread position:240-595
               
               
               Cow position:chr20:28594536-28594162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:268
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):60, 18

               
               
               Conread position:240-651
               
               
               Cow position:chr20:3255278-3254878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 79

               
               
               Conread position:240-665
               
               
               Cow position:chr20:14980263-14980698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 88

               
               
               Conread position:240-665
               
               
               Cow position:chr20:35742014-35741569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:288
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):82, 14

               
               
               Conread position:240-666
               
               
               Cow position:chr20:40177488-40177065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 93

               
               
               Conread position:240-667
               
               
               Cow position:chr20:39743547-39743128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 51

               
               
               Conread position:240-670
               
               
               Cow position:chr20:26996778-26996341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 128

               
               
               Conread position:240-671
               
               
               Cow position:chr20:12581712-12582137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 96

               
               
               Conread position:240-671
               
               
               Cow position:chr20:13269859-13269432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 86

               
               
               Conread position:240-671
               
               
               Cow position:chr20:38818233-38817820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):241, 67

               
               
               Conread position:240-672
               
               
               Cow position:chr20:8578499-8578053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 200

               
               
               Conread position:240-672
               
               
               Cow position:chr20:21929147-21928714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 88

               
               
               Conread position:240-673
               
               
               Cow position:chr20:6603273-6602849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 19

               
               
               Conread position:240-673
               
               
               Cow position:chr20:7756394-7756821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 9

               
               
               Conread position:240-673
               
               
               Cow position:chr20:10200593-10200150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 45

               
               
               Conread position:240-673
               
               
               Cow position:chr20:11043216-11043688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:313
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):69, 207

               
               
               Conread position:240-673
               
               
               Cow position:chr20:14807127-14806694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 93

               
               
               Conread position:240-673
               
               
               Cow position:chr20:20984241-20983815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 184

               
               
               Conread position:240-673
               
               
               Cow position:chr20:40422854-40423282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 248

               
               
               Conread position:240-674
               
               
               Cow position:chr20:11741072-11741497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):244, 55

               
               
               Conread position:240-674
               
               
               Cow position:chr20:25686122-25686545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 67

               
               
               Conread position:240-674
               
               
               Cow position:chr20:28605450-28605012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 80

               
               
               Conread position:240-674
               
               
               Cow position:chr20:28982944-28982504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 82

               
               
               Conread position:240-674
               
               
               Cow position:chr20:36779476-36779924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 12

               
               
               Conread position:240-675
               
               
               Cow position:chr20:3599158-3599584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 34

               
               
               Conread position:240-675
               
               
               Cow position:chr20:27407651-27408070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):236, 29

               
               
               Conread position:241-410
               
               
               Cow position:chr20:22012632-22012470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:241-426
               
               
               Cow position:chr20:25464802-25464987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):6, 110

               
               
               Conread position:241-469
               
               
               Cow position:chr20:15530102-15529874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):85, 9

               
               
               Conread position:241-473
               
               
               Cow position:chr20:14283167-14282930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):6, 203

               
               
               Conread position:241-482
               
               
               Cow position:chr20:5365172-5364930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):6, 25

               
               
               Conread position:241-505
               
               
               Cow position:chr20:35207961-35208231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):43, 36

               
               
               Conread position:241-511
               
               
               Cow position:chr20:13034090-13034353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):176, 78

               
               
               Conread position:241-521
               
               
               Cow position:chr20:21721463-21721190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):79, 39

               
               
               Conread position:241-539
               
               
               Cow position:chr20:11548485-11548779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):163, 68

               
               
               Conread position:241-556
               
               
               Cow position:chr20:32709197-32709528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:237
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):20, 183

               
               
               Conread position:241-574
               
               
               Cow position:chr20:7737991-7738323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 83

               
               
               Conread position:241-580
               
               
               Cow position:chr20:24712084-24711732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 36

               
               
               Conread position:241-592
               
               
               Cow position:chr20:11188580-11188920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:253
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):229, 33

               
               
               Conread position:241-652
               
               
               Cow position:chr20:16935063-16935474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:294
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):17, 79

               
               
               Conread position:241-662
               
               
               Cow position:chr20:38551620-38551193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 125

               
               
               Conread position:241-668
               
               
               Cow position:chr20:747175-746763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:302
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):108, 44

               
               
               Conread position:241-670
               
               
               Cow position:chr20:35888516-35888960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:284
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):77, 117

               
               
               Conread position:241-672
               
               
               Cow position:chr20:39398724-39398297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 8

               
               
               Conread position:241-675
               
               
               Cow position:chr20:22065304-22064876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):234, 86

               
               
               Conread position:241-687
               
               
               Cow position:chr20:33434916-33435375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 44

               
               
               Conread position:242-412
               
               
               Cow position:chr20:24491785-24491956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):129, 77

               
               
               Conread position:242-416
               
               
               Cow position:chr20:21279623-21279455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-422
               
               
               Cow position:chr20:19201776-19201592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:242-430
               
               
               Cow position:chr20:19834589-19834779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):172, 55

               
               
               Conread position:242-460
               
               
               Cow position:chr20:7416918-7417145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):68, 200

               
               
               Conread position:242-511
               
               
               Cow position:chr20:25351184-25351437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):175, 68

               
               
               Conread position:242-522
               
               
               Cow position:chr20:21428400-21428119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 86

               
               
               Conread position:242-535
               
               
               Cow position:chr20:5009974-5009685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):86, 109

               
               
               Conread position:242-540
               
               
               Cow position:chr20:38515031-38514723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 129

               
               
               Conread position:242-623
               
               
               Cow position:chr20:14433177-14433570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 117

               
               
               Conread position:242-673
               
               
               Cow position:chr20:12420377-12420813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 143

               
               
               Conread position:242-673
               
               
               Cow position:chr20:33532532-33532119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 53

               
               
               Conread position:242-673
               
               
               Cow position:chr20:34251427-34251870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:306
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):75, 263

               
               
               Conread position:242-675
               
               
               Cow position:chr20:39417660-39418088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 19

               
               
               Conread position:243-470
               
               
               Cow position:chr20:5703713-5703483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):83, 30

               
               
               Conread position:243-473
               
               
               Cow position:chr20:20158372-20158145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):171, 74

               
               
               Conread position:243-506
               
               
               Cow position:chr20:6372323-6372587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):43, 50

               
               
               Conread position:244-468
               
               
               Cow position:chr20:37919136-37919356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):171, 30

               
               
               Conread position:244-539
               
               
               Cow position:chr20:23850861-23850563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):71, 45

               
               
               Conread position:245-429
               
               
               Cow position:chr20:26040858-26041046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:245-466
               
               
               Cow position:chr20:3148920-3148700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):173, 41

               
               
               Conread position:245-574
               
               
               Cow position:chr20:40303643-40303966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:228
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):65, 172

               
               
               Conread position:245-673
               
               
               Cow position:chr20:4621102-4621531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:311
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):62, 161

               
               
               Conread position:245-673
               
               
               Cow position:chr20:5998422-5998856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 35

               
               
               Conread position:245-673
               
               
               Cow position:chr20:6240281-6240721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 136

               
               
               Conread position:246-422
               
               
               Cow position:chr20:31468418-31468598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):69, 167

               
               
               Conread position:246-521
               
               
               Cow position:chr20:11751892-11751609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):87, 123

               
               
               Conread position:246-539
               
               
               Cow position:chr20:11008411-11008113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):82, 114

               
               
               Conread position:246-609
               
               
               Cow position:chr20:7438619-7438984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 71

               
               
               Conread position:246-630
               
               
               Cow position:chr20:28441557-28441177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 80

               
               
               Conread position:246-671
               
               
               Cow position:chr20:25009395-25009833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 88

               
               
               Conread position:249-455
               
               
               Cow position:chr20:39268847-39269058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):30, 185

               
               
               Conread position:249-527
               
               
               Cow position:chr20:20898354-20898635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):53, 46

               
               
               Conread position:249-675
               
               
               Cow position:chr20:14759439-14759859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 76

               
               
               Conread position:250-457
               
               
               Cow position:chr20:36312277-36312483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):29, 48

               
               
               Conread position:250-621
               
               
               Cow position:chr20:41473516-41473869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:244
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):178, 34

               
               
               Conread position:250-673
               
               
               Cow position:chr20:14880020-14879595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 70

               
               
               Conread position:250-673
               
               
               Cow position:chr20:21345673-21345214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 90

               
               
               Conread position:251-387
               
               
               Cow position:chr20:23506170-23506032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:251-427
               
               
               Cow position:chr20:33076588-33076766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):75, 103

               
               
               Conread position:251-468
               
               
               Cow position:chr20:1824398-1824616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):166, 73

               
               
               Conread position:251-552
               
               
               Cow position:chr20:11135519-11135831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):75, 58

               
               
               Conread position:251-562
               
               
               Cow position:chr20:20926393-20926707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):67, 103

               
               
               Conread position:251-603
               
               
               Cow position:chr20:25161898-25162254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 41

               
               
               Conread position:251-672
               
               
               Cow position:chr20:381901-382318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 14

               
               
               Conread position:251-673
               
               
               Cow position:chr20:34596870-34597300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:298
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):23, 35

               
               
               Conread position:251-675
               
               
               Cow position:chr20:35176541-35176963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:290
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):82, 138

               
               
               Conread position:252-610
               
               
               Cow position:chr20:38846995-38847368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):63, 238

               
               
               Conread position:252-664
               
               
               Cow position:chr20:11045906-11045495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:276
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):74, 100

               
               
               Conread position:253-486
               
               
               Cow position:chr20:35444875-35445108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):161, 20

               
               
               Conread position:253-492
               
               
               Cow position:chr20:16291922-16291683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):75, 213

               
               
               Conread position:253-539
               
               
               Cow position:chr20:22937085-22937369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):65, 101

               
               
               Conread position:253-558
               
               
               Cow position:chr20:38670997-38670683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):72, 194

               
               
               Conread position:253-673
               
               
               Cow position:chr20:7425967-7426381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 79

               
               
               Conread position:254-426
               
               
               Cow position:chr20:31845058-31845227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):46, 31

               
               
               Conread position:254-540
               
               
               Cow position:chr20:30119362-30119632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):213, 22

               
               
               Conread position:254-603
               
               
               Cow position:chr20:33976719-33976353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:264
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):70, 146

               
               
               Conread position:254-606
               
               
               Cow position:chr20:2298565-2298906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 65

               
               
               Conread position:254-675
               
               
               Cow position:chr20:6424183-6423769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):230, 7

               
               
               Conread position:255-539
               
               
               Cow position:chr20:16548043-16548335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):68, 230

               
               
               Conread position:255-550
               
               
               Cow position:chr20:12085201-12085492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):65, 21

               
               
               Conread position:255-673
               
               
               Cow position:chr20:22959115-22959534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 124

               
               
               Conread position:256-606
               
               
               Cow position:chr20:33067131-33067503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 180

               
               
               Conread position:257-539
               
               
               Cow position:chr20:354671-354954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 161

               
               
               Conread position:257-572
               
               
               Cow position:chr20:15822777-15822457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):33, 110

               
               
               Conread position:257-662
               
               
               Cow position:chr20:19237298-19236897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 56

               
               
               Conread position:257-666
               
               
               Cow position:chr20:7550461-7550056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 142

               
               
               Conread position:257-673
               
               
               Cow position:chr20:4206184-4205771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 16

               
               
               Conread position:258-430
               
               
               Cow position:chr20:20590078-20590250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):157, 62

               
               
               Conread position:258-596
               
               
               Cow position:chr20:2819774-2819424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:236
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):49, 252

               
               
               Conread position:258-673
               
               
               Cow position:chr20:29805436-29805853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 9

               
               
               Conread position:259-673
               
               
               Cow position:chr20:30817746-30817345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:296
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):69, 111

               
               
               Conread position:259-687
               
               
               Cow position:chr20:9433807-9433392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 68

               
               
               Conread position:261-672
               
               
               Cow position:chr20:31746413-31746816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:280
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):152, 171

               
               
               Conread position:262-597
               
               
               Cow position:chr20:1576325-1575979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:239
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):27, 178

               
               
               Conread position:262-640
               
               
               Cow position:chr20:5814791-5814411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 23

               
               
               Conread position:262-675
               
               
               Cow position:chr20:18551587-18551169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:280
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):45, 101

               
               
               Conread position:263-651
               
               
               Cow position:chr20:3320911-3321308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:295
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):55, 34

               
               
               Conread position:271-549
               
               
               Cow position:chr20:23506260-23506536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):44, 18

               
               
               Conread position:272-565
               
               
               Cow position:chr20:32865987-32866275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):146, 14

               
               
               Conread position:274-697
               
               
               Cow position:chr20:20203425-20203001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 61

               
               
               Conread position:278-672
               
               
               Cow position:chr20:10838010-10838412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:269
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):146, 13

               
               
               Conread position:279-646
               
               
               Cow position:chr20:13652165-13652522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:259
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):139, 43

               
               
               Conread position:282-511
               
               
               Cow position:chr20:19060638-19060869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):179, 46

               
               
               Conread position:282-597
               
               
               Cow position:chr20:32463323-32463641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:227
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):202, 51

               
               
               Conread position:283-617
               
               
               Cow position:chr20:22485063-22484724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 139

               
               
               Conread position:287-539
               
               
               Cow position:chr20:39962775-39962518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):39, 74

               
               
               Conread position:297-673
               
               
               Cow position:chr20:15593473-15593104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 110

               
               
               Conread position:298-521
               
               
               Cow position:chr20:22030506-22030280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):119, 69

               
               
               Conread position:300-673
               
               
               Cow position:chr20:38768278-38768645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 115

               
               
               Conread position:301-585
               
               
               Cow position:chr20:8619969-8620259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):117, 22

               
               
               Conread position:301-655
               
               
               Cow position:chr20:23064649-23065003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 106

               
               
               Conread position:302-581
               
               
               Cow position:chr20:16492258-16491970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):13, 187

               
               
               Conread position:307-630
               
               
               Cow position:chr20:2169547-2169857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 14

               
               
               Conread position:307-672
               
               
               Cow position:chr20:17846136-17845768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 130

               
               
               Conread position:308-673
               
               
               Cow position:chr20:19751482-19751117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 25

               
               
               Conread position:308-674
               
               
               Cow position:chr20:580745-581114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 25

               
               
               Conread position:310-469
               
               
               Cow position:chr20:23678540-23678704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:310-475
               
               
               Cow position:chr20:17388705-17388539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):40, 83

               
               
               Conread position:310-511
               
               
               Cow position:chr20:21815734-21815531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):104, 23

               
               
               Conread position:310-536
               
               
               Cow position:chr20:10772380-10772149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):25, 83

               
               
               Conread position:310-568
               
               
               Cow position:chr20:20056313-20056570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):105, 24

               
               
               Conread position:310-592
               
               
               Cow position:chr20:33438805-33439087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):16, 116

               
               
               Conread position:310-617
               
               
               Cow position:chr20:40446503-40446193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:227
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):36, 47

               
               
               Conread position:310-637
               
               
               Cow position:chr20:32988659-32988988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:234
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):114, 23

               
               
               Conread position:310-675
               
               
               Cow position:chr20:39415921-39415552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:265
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):120, 14

               
               
               Conread position:310-678
               
               
               Cow position:chr20:9537305-9536937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 23

               
               
               Conread position:311-417
               
               
               Cow position:chr20:15515268-15515373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:86
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:311-674
               
               
               Cow position:chr20:23870647-23871009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 22

               
               
               Conread position:312-540
               
               
               Cow position:chr20:35727755-35727991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):16, 126

               
               
               Conread position:313-504
               
               
               Cow position:chr20:29084210-29084412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):9, 133

               
               
               Conread position:313-523
               
               
               Cow position:chr20:40158070-40157859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):102, 20

               
               
               Conread position:313-569
               
               
               Cow position:chr20:17100533-17100271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):106, 76

               
               
               Conread position:313-602
               
               
               Cow position:chr20:36633984-36633692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:219
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):17, 89

               
               
               Conread position:313-673
               
               
               Cow position:chr20:5827110-5826745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 21

               
               
               Conread position:313-673
               
               
               Cow position:chr20:6890878-6890513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:267
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):111, 21

               
               
               Conread position:313-673
               
               
               Cow position:chr20:21714940-21714560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 222

               
               
               Conread position:313-675
               
               
               Cow position:chr20:34777350-34776992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 13

               
               
               Conread position:314-506
               
               
               Cow position:chr20:26723512-26723699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):99, 19

               
               
               Conread position:314-620
               
               
               Cow position:chr20:25657670-25657950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):76, 20

               
               
               Conread position:314-669
               
               
               Cow position:chr20:40185505-40185864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):52, 23

               
               
               Conread position:314-671
               
               
               Cow position:chr20:38578593-38578947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 105

               
               
               Conread position:314-674
               
               
               Cow position:chr20:10818070-10818418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 125

               
               
               Conread position:315-663
               
               
               Cow position:chr20:42458688-42459034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 18

               
               
               Conread position:315-673
               
               
               Cow position:chr20:35365210-35364859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 29

               
               
               Conread position:315-674
               
               
               Cow position:chr20:35906882-35907240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 19

               
               
               Conread position:317-634
               
               
               Cow position:chr20:5636647-5636327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 16

               
               
               Conread position:320-477
               
               
               Cow position:chr20:4002258-4002102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):96, 24

               
               
               Conread position:320-493
               
               
               Cow position:chr20:8912334-8912511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:320-629
               
               
               Cow position:chr20:13025445-13025756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:231
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):12, 215

               
               
               Conread position:320-674
               
               
               Cow position:chr20:42469922-42469572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 13

               
               
               Conread position:321-674
               
               
               Cow position:chr20:28067262-28067619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 12

               
               
               Conread position:322-528
               
               
               Cow position:chr20:24902130-24902345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):7, 114

               
               
               Conread position:322-603
               
               
               Cow position:chr20:4332295-4332012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):23, 11

               
               
               Conread position:322-673
               
               
               Cow position:chr20:33144392-33144747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 12

               
               
               Conread position:323-669
               
               
               Cow position:chr20:19459505-19459835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):91, 11

               
               
               Conread position:323-670
               
               
               Cow position:chr20:9412648-9412303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 10

               
               
               Conread position:323-672
               
               
               Cow position:chr20:40127183-40127527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:247
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):96, 33

               
               
               Conread position:324-551
               
               
               Cow position:chr20:30888194-30887960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):72, 13

               
               
               Conread position:324-591
               
               
               Cow position:chr20:5385582-5385856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):14, 114

               
               
               Conread position:324-610
               
               
               Cow position:chr20:22978487-22978189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:221
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):90, 115

               
               
               Conread position:324-676
               
               
               Cow position:chr20:18320634-18320991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 107

               
               
               Conread position:325-674
               
               
               Cow position:chr20:40511598-40511951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 12

               
               
               Conread position:327-542
               
               
               Cow position:chr20:21204509-21204299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):91, 17

               
               
               Conread position:327-673
               
               
               Cow position:chr20:34108262-34107924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):92, 111

               
               
               Conread position:328-663
               
               
               Cow position:chr20:40782117-40781786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 145

               
               
               Conread position:328-667
               
               
               Cow position:chr20:36207970-36207616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 203

               
               
               Conread position:328-676
               
               
               Cow position:chr20:11481979-11482334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 31

               
               
               Conread position:329-673
               
               
               Cow position:chr20:15565674-15566023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 57

               
               
               Conread position:330-565
               
               
               Cow position:chr20:26077514-26077745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):82, 100

               
               
               Conread position:330-605
               
               
               Cow position:chr20:28955546-28955827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):13, 111

               
               
               Conread position:337-475
               
               
               Cow position:chr20:8817344-8817486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):81, 94

               
               
               Conread position:337-518
               
               
               Cow position:chr20:6358767-6358578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):76, 98

               
               
               Conread position:337-672
               
               
               Cow position:chr20:23792751-23792411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 98

               
               
               Conread position:337-672
               
               
               Cow position:chr20:35797754-35797414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 14

               
               
               Conread position:337-673
               
               
               Cow position:chr20:15235899-15235570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 70

               
               
               Conread position:337-675
               
               
               Cow position:chr20:19363216-19363556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 22

               
               
               Conread position:337-695
               
               
               Cow position:chr20:8606796-8607137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:250
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):256, 33

               
               
               Conread position:339-589
               
               
               Cow position:chr20:39266813-39267071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):81, 99

               
               
               Conread position:340-519
               
               
               Cow position:chr20:22000146-21999960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):73, 65

               
               
               Conread position:341-675
               
               
               Cow position:chr20:33363661-33363326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 94

               
               
               Conread position:344-521
               
               
               Cow position:chr20:39212441-39212621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):140, 88

               
               
               Conread position:348-474
               
               
               Cow position:chr20:1009570-1009698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):70, 87

               
               
               Conread position:354-590
               
               
               Cow position:chr20:24000666-24000911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):25, 66

               
               
               Conread position:355-670
               
               
               Cow position:chr20:34001261-34001585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:238
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):69, 20

               
               
               Conread position:359-667
               
               
               Cow position:chr20:37165835-37165540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:219
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):126, 53

               
               
               Conread position:363-567
               
               
               Cow position:chr20:34085189-34084976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):50, 107

               
               
               Conread position:367-630
               
               
               Cow position:chr20:36010913-36010640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:189
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):62, 155

               
               
               Conread position:368-576
               
               
               Cow position:chr20:15118392-15118177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):61, 111

               
               
               Conread position:368-663
               
               
               Cow position:chr20:41028605-41028301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):62, 56

               
               
               Conread position:368-675
               
               
               Cow position:chr20:22313044-22313353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 104

               
               
               Conread position:372-574
               
               
               Cow position:chr20:23103335-23103123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):47, 154

               
               
               Conread position:375-686
               
               
               Cow position:chr20:35009628-35009946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:240
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):33, 63

               
               
               Conread position:378-606
               
               
               Cow position:chr20:13795087-13794858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):40, 58

               
               
               Conread position:384-672
               
               
               Cow position:chr20:39019796-39019504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:215
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):35, 54

               
               
               Conread position:390-545
               
               
               Cow position:chr20:37339010-37338851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):41, 134

               
               
               Conread position:390-637
               
               
               Cow position:chr20:10788796-10789022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):23, 48

               
               
               Conread position:390-687
               
               
               Cow position:chr20:35958742-35958439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 48

               
               
               Conread position:393-674
               
               
               Cow position:chr20:14735760-14735483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 74

               
               
               Conread position:399-581
               
               
               Cow position:chr20:28804655-28804459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):20, 165

               
               
               Conread position:399-600
               
               
               Cow position:chr20:24727448-24727247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):31, 81

               
               
               Conread position:399-643
               
               
               Cow position:chr20:282840-283091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):31, 124

               
               
               Conread position:399-665
               
               
               Cow position:chr20:34365109-34364851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):31, 14

               
               
               Conread position:399-673
               
               
               Cow position:chr20:13967171-13967450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 20

               
               
               Conread position:399-673
               
               
               Cow position:chr20:20202077-20201800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):18, 39

               
               
               Conread position:400-590
               
               
               Cow position:chr20:34901656-34901459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):19, 38

               
               
               Conread position:400-673
               
               
               Cow position:chr20:9473530-9473806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):19, 37

               
               
               Conread position:401-673
               
               
               Cow position:chr20:40257053-40256778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):14, 37

               
               
               Conread position:402-671
               
               
               Cow position:chr20:22704377-22704098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 17

               
               
               Conread position:402-675
               
               
               Cow position:chr20:19146959-19146676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):10, 43

               
               
               Conread position:409-650
               
               
               Cow position:chr20:28832043-28831794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:188
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):75, 27

               
               
               Conread position:417-670
               
               
               Cow position:chr20:17904223-17903971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:188
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):122, 19

               
               
               Conread position:418-673
               
               
               Cow position:chr20:20312684-20312929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:202
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):48, 17

               
               
               Conread position:419-671
               
               
               Cow position:chr20:18185629-18185389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):36, 17

               
               
               Conread position:419-673
               
               
               Cow position:chr20:18100470-18100227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:429-673
               
               
               Cow position:chr20:11923192-11923431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):39, 53

               
               
               Conread position:434-673
               
               
               Cow position:chr20:3781375-3781618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:191
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):39, 90

               
               
               Conread position:434-674
               
               
               Cow position:chr20:27340111-27339873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 86

               
               
               Conread position:436-673
               
               
               Cow position:chr20:9379452-9379217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:186
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):91, 44

               
               
               Conread position:438-667
               
               
               Cow position:chr20:24392023-24391794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:178
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):43, 32

               
               
               Conread position:439-673
               
               
               Cow position:chr20:6848674-6848430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):32, 85

               
               
               Conread position:439-673
               
               
               Cow position:chr20:15760906-15761140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:181
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):84, 41

               
               
               Conread position:440-674
               
               
               Cow position:chr20:7110079-7110310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):45, 39

               
               
               Conread position:441-640
               
               
               Cow position:chr20:9701527-9701734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):38, 87

               
               
               Conread position:443-635
               
               
               Cow position:chr20:41309579-41309382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):33, 26

               
               
               Conread position:443-673
               
               
               Cow position:chr20:15069179-15068952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):84, 77

               
               
               Conread position:446-676
               
               
               Cow position:chr20:37200398-37200158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):38, 78

               
               
               Conread position:448-675
               
               
               Cow position:chr20:33177228-33176988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):21, 142

               
               
               Conread position:451-687
               
               
               Cow position:chr20:19410330-19410575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):19, 73

               
               
               Conread position:459-630
               
               
               Cow position:chr20:18837132-18837310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):22, 63

               
               
               Conread position:483-675
               
               
               Cow position:chr20:12334374-12334187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):12, 38

               
               
               Conread position:491-675
               
               
               Cow position:chr20:15582047-15582230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):36, 28

               
               
               Conread position:162-527
               
               
               Cow position:chr21:8950534-8950155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):139, 45

               
               
               Conread position:162-664
               
               
               Cow position:chr21:12154472-12153973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 21

               
               
               Conread position:217-605
               
               
               Cow position:chr21:6696748-6697137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:266
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):92, 103

               
               
               Conread position:218-479
               
               
               Cow position:chr21:41287507-41287768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 104

               
               
               Conread position:226-539
               
               
               Cow position:chr21:47363445-47363775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 60

               
               
               Conread position:230-675
               
               
               Cow position:chr21:28028075-28027630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:303
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):10, 129

               
               
               Conread position:231-675
               
               
               Cow position:chr21:29069049-29069502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 106

               
               
               Conread position:233-673
               
               
               Cow position:chr21:37299732-37299296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 42

               
               
               Conread position:234-385
               
               
               Cow position:chr21:46609732-46609884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:234-391
               
               
               Cow position:chr21:30368346-30368190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):9, 85

               
               
               Conread position:234-392
               
               
               Cow position:chr21:38943338-38943495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):108, 18

               
               
               Conread position:234-406
               
               
               Cow position:chr21:3379482-3379653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):56, 50

               
               
               Conread position:234-415
               
               
               Cow position:chr21:40930208-40930385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:234-417
               
               
               Cow position:chr21:27744300-27744113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):86, 105

               
               
               Conread position:234-417
               
               
               Cow position:chr21:36398300-36398474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:234-422
               
               
               Cow position:chr21:15305025-15305215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):76, 18

               
               
               Conread position:234-431
               
               
               Cow position:chr21:42189490-42189686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):65, 19

               
               
               Conread position:234-446
               
               
               Cow position:chr21:26735668-26735466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:234-451
               
               
               Cow position:chr21:2536866-2537087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):84, 19

               
               
               Conread position:234-451
               
               
               Cow position:chr21:40820580-40820801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):92, 117

               
               
               Conread position:234-460
               
               
               Cow position:chr21:13225987-13225758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):81, 18

               
               
               Conread position:234-468
               
               
               Cow position:chr21:41610449-41610202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):73, 19

               
               
               Conread position:234-468
               
               
               Cow position:chr21:44591932-44592174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):43, 196

               
               
               Conread position:234-468
               
               
               Cow position:chr21:46809495-46809736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):94, 12

               
               
               Conread position:234-472
               
               
               Cow position:chr21:24797925-24797687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):95, 15

               
               
               Conread position:234-474
               
               
               Cow position:chr21:9417873-9418126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):61, 194

               
               
               Conread position:234-486
               
               
               Cow position:chr21:28907279-28907525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):92, 15

               
               
               Conread position:234-499
               
               
               Cow position:chr21:12104625-12104367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):9, 94

               
               
               Conread position:234-503
               
               
               Cow position:chr21:13589033-13588761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):91, 117

               
               
               Conread position:234-504
               
               
               Cow position:chr21:44829486-44829764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):82, 18

               
               
               Conread position:234-528
               
               
               Cow position:chr21:28030549-28030263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):183, 16

               
               
               Conread position:234-539
               
               
               Cow position:chr21:17983241-17982939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):181, 15

               
               
               Conread position:234-539
               
               
               Cow position:chr21:36911008-36910703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):104, 73

               
               
               Conread position:234-542
               
               
               Cow position:chr21:41522141-41522447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):8, 41

               
               
               Conread position:234-562
               
               
               Cow position:chr21:17890573-17890239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):92, 18

               
               
               Conread position:234-572
               
               
               Cow position:chr21:47719034-47719373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 24

               
               
               Conread position:234-591
               
               
               Cow position:chr21:45906350-45906714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:255
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):105, 122

               
               
               Conread position:234-595
               
               
               Cow position:chr21:10817305-10816925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):84, 127

               
               
               Conread position:234-601
               
               
               Cow position:chr21:21686687-21686315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):67, 18

               
               
               Conread position:234-629
               
               
               Cow position:chr21:20153227-20152820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 15

               
               
               Conread position:234-637
               
               
               Cow position:chr21:17874919-17875331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:278
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):70, 114

               
               
               Conread position:234-644
               
               
               Cow position:chr21:23568495-23568071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:293
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):181, 18

               
               
               Conread position:234-671
               
               
               Cow position:chr21:10264305-10263871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 18

               
               
               Conread position:234-672
               
               
               Cow position:chr21:5970575-5971008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:292
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):182, 73

               
               
               Conread position:234-672
               
               
               Cow position:chr21:14464859-14464406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 198

               
               
               Conread position:234-672
               
               
               Cow position:chr21:42135348-42135794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 86

               
               
               Conread position:234-672
               
               
               Cow position:chr21:46972895-46973296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:303
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):24, 15

               
               
               Conread position:234-673
               
               
               Cow position:chr21:15444811-15445250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 158

               
               
               Conread position:234-673
               
               
               Cow position:chr21:32559097-32559525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 90

               
               
               Conread position:234-674
               
               
               Cow position:chr21:14452504-14452057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 45

               
               
               Conread position:234-675
               
               
               Cow position:chr21:23535983-23535543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 18

               
               
               Conread position:235-399
               
               
               Cow position:chr21:9315072-9314913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):9, 76

               
               
               Conread position:235-409
               
               
               Cow position:chr21:31462828-31462658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):12, 82

               
               
               Conread position:235-473
               
               
               Cow position:chr21:12310742-12310508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):95, 14

               
               
               Conread position:235-486
               
               
               Cow position:chr21:20213501-20213759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):60, 202

               
               
               Conread position:235-511
               
               
               Cow position:chr21:7768696-7768425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):183, 39

               
               
               Conread position:235-517
               
               
               Cow position:chr21:44724106-44724380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):183, 84

               
               
               Conread position:235-522
               
               
               Cow position:chr21:13656365-13656655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):91, 17

               
               
               Conread position:235-539
               
               
               Cow position:chr21:41140446-41140754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):93, 17

               
               
               Conread position:235-551
               
               
               Cow position:chr21:10072435-10072097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):91, 17

               
               
               Conread position:235-556
               
               
               Cow position:chr21:12339888-12339581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:236
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):8, 39

               
               
               Conread position:235-570
               
               
               Cow position:chr21:1511556-1511219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 72

               
               
               Conread position:235-579
               
               
               Cow position:chr21:30255986-30256350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:246
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):8, 166

               
               
               Conread position:235-593
               
               
               Cow position:chr21:44658832-44658487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:246
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):9, 71

               
               
               Conread position:235-672
               
               
               Cow position:chr21:30231426-30231872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 97

               
               
               Conread position:235-673
               
               
               Cow position:chr21:22718513-22718952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 50

               
               
               Conread position:235-674
               
               
               Cow position:chr21:30592045-30592476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):238, 14

               
               
               Conread position:236-382
               
               
               Cow position:chr21:42341673-42341815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:236-406
               
               
               Cow position:chr21:18055861-18056030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):124, 13

               
               
               Conread position:236-434
               
               
               Cow position:chr21:745438-745243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):183, 16

               
               
               Conread position:236-443
               
               
               Cow position:chr21:20174582-20174378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):7, 60

               
               
               Conread position:236-517
               
               
               Cow position:chr21:9256388-9256672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):58, 13

               
               
               Conread position:236-538
               
               
               Cow position:chr21:42209376-42209667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):182, 49

               
               
               Conread position:236-539
               
               
               Cow position:chr21:22014460-22014150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):43, 33

               
               
               Conread position:236-673
               
               
               Cow position:chr21:29001879-29002333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 13

               
               
               Conread position:236-674
               
               
               Cow position:chr21:24296497-24296937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:286
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):82, 16

               
               
               Conread position:236-675
               
               
               Cow position:chr21:82327-81897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 11

               
               
               Conread position:237-371
               
               
               Cow position:chr21:20166049-20165914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:237-417
               
               
               Cow position:chr21:3135600-3135781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):89, 39

               
               
               Conread position:237-434
               
               
               Cow position:chr21:28882450-28882250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):93, 15

               
               
               Conread position:237-476
               
               
               Cow position:chr21:20163975-20163735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:180
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):24, 12

               
               
               Conread position:237-542
               
               
               Cow position:chr21:71855-71545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 129

               
               
               Conread position:237-625
               
               
               Cow position:chr21:30222609-30222218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 12

               
               
               Conread position:237-628
               
               
               Cow position:chr21:27810659-27810278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 12

               
               
               Conread position:237-629
               
               
               Cow position:chr21:47315-46911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 205

               
               
               Conread position:237-662
               
               
               Cow position:chr21:32297240-32297671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 213

               
               
               Conread position:237-676
               
               
               Cow position:chr21:45970912-45971332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 16

               
               
               Conread position:238-413
               
               
               Cow position:chr21:42455125-42454953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):93, 47

               
               
               Conread position:238-425
               
               
               Cow position:chr21:31658888-31659070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:238-441
               
               
               Cow position:chr21:1464609-1464407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):88, 15

               
               
               Conread position:238-451
               
               
               Cow position:chr21:30145365-30145576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):8, 84

               
               
               Conread position:238-470
               
               
               Cow position:chr21:40291482-40291713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):178, 90

               
               
               Conread position:238-476
               
               
               Cow position:chr21:8713691-8713932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):93, 15

               
               
               Conread position:238-515
               
               
               Cow position:chr21:10148265-10147980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):88, 11

               
               
               Conread position:238-539
               
               
               Cow position:chr21:33580677-33580384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):169, 14

               
               
               Conread position:238-592
               
               
               Cow position:chr21:17559650-17560023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):76, 16

               
               
               Conread position:238-605
               
               
               Cow position:chr21:23979912-23980289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 189

               
               
               Conread position:238-643
               
               
               Cow position:chr21:957936-957526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 90

               
               
               Conread position:238-664
               
               
               Cow position:chr21:15584157-15584573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 15

               
               
               Conread position:238-670
               
               
               Cow position:chr21:9301491-9301038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:292
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):75, 15

               
               
               Conread position:238-672
               
               
               Cow position:chr21:13584785-13585230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 190

               
               
               Conread position:238-672
               
               
               Cow position:chr21:41621393-41620949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 8

               
               
               Conread position:238-673
               
               
               Cow position:chr21:18568371-18568821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 11

               
               
               Conread position:238-673
               
               
               Cow position:chr21:37706145-37706578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 200

               
               
               Conread position:238-673
               
               
               Cow position:chr21:40134412-40133984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 14

               
               
               Conread position:238-674
               
               
               Cow position:chr21:38918468-38918042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 14

               
               
               Conread position:238-674
               
               
               Cow position:chr21:41156137-41155688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 14

               
               
               Conread position:238-697
               
               
               Cow position:chr21:34010128-34010584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 105

               
               
               Conread position:239-417
               
               
               Cow position:chr21:12473796-12473972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):103, 89

               
               
               Conread position:239-417
               
               
               Cow position:chr21:26828705-26828883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):89, 160

               
               
               Conread position:239-425
               
               
               Cow position:chr21:3178111-3177927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):87, 34

               
               
               Conread position:239-427
               
               
               Cow position:chr21:15271173-15271359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:239-427
               
               
               Cow position:chr21:21940145-21940329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:239-431
               
               
               Cow position:chr21:38482648-38482454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):75, 177

               
               
               Conread position:239-431
               
               
               Cow position:chr21:41738174-41737981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):87, 46

               
               
               Conread position:239-452
               
               
               Cow position:chr21:37928917-37928700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):89, 37

               
               
               Conread position:239-465
               
               
               Cow position:chr21:39394015-39393786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):27, 95

               
               
               Conread position:239-472
               
               
               Cow position:chr21:9278794-9278554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):87, 224

               
               
               Conread position:239-473
               
               
               Cow position:chr21:12322764-12322533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):50, 45

               
               
               Conread position:239-477
               
               
               Cow position:chr21:22851181-22850948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):175, 71

               
               
               Conread position:239-539
               
               
               Cow position:chr21:19059825-19060124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):94, 120

               
               
               Conread position:239-542
               
               
               Cow position:chr21:10656836-10657142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):56, 13

               
               
               Conread position:239-570
               
               
               Cow position:chr21:40266390-40266049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 113

               
               
               Conread position:239-592
               
               
               Cow position:chr21:13753137-13752793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:239
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):87, 35

               
               
               Conread position:239-617
               
               
               Cow position:chr21:18155298-18155689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:261
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):60, 46

               
               
               Conread position:239-671
               
               
               Cow position:chr21:27521076-27521497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 22

               
               
               Conread position:239-671
               
               
               Cow position:chr21:47761037-47760606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 122

               
               
               Conread position:239-672
               
               
               Cow position:chr21:13634304-13633870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:280
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):173, 95

               
               
               Conread position:239-674
               
               
               Cow position:chr21:25345130-25344705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:306
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):59, 46

               
               
               Conread position:239-676
               
               
               Cow position:chr21:13034769-13035222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:296
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):94, 121

               
               
               Conread position:240-381
               
               
               Cow position:chr21:37479325-37479469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):63, 99

               
               
               Conread position:240-382
               
               
               Cow position:chr21:11761827-11761686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:240-402
               
               
               Cow position:chr21:43655967-43655805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):86, 115

               
               
               Conread position:240-404
               
               
               Cow position:chr21:45376212-45376049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:240-405
               
               
               Cow position:chr21:6042054-6041884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:240-409
               
               
               Cow position:chr21:48334520-48334696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):59, 102

               
               
               Conread position:240-411
               
               
               Cow position:chr21:29011711-29011876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:240-414
               
               
               Cow position:chr21:45537456-45537273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:240-417
               
               
               Cow position:chr21:37360974-37361154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):29, 80

               
               
               Conread position:240-417
               
               
               Cow position:chr21:44732778-44732955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):94, 165

               
               
               Conread position:240-418
               
               
               Cow position:chr21:32272194-32272007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):67, 13

               
               
               Conread position:240-421
               
               
               Cow position:chr21:39845868-39845677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:240-422
               
               
               Cow position:chr21:8986291-8986104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:240-423
               
               
               Cow position:chr21:438821-438644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:240-431
               
               
               Cow position:chr21:29418838-29418643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):18, 178

               
               
               Conread position:240-459
               
               
               Cow position:chr21:25014775-25014982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:240-464
               
               
               Cow position:chr21:41041213-41040983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:240-474
               
               
               Cow position:chr21:21616041-21615811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):178, 33

               
               
               Conread position:240-475
               
               
               Cow position:chr21:17252712-17252950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:178
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):99, 196

               
               
               Conread position:240-503
               
               
               Cow position:chr21:41917974-41918247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):75, 45

               
               
               Conread position:240-513
               
               
               Cow position:chr21:32392798-32393061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):86, 13

               
               
               Conread position:240-531
               
               
               Cow position:chr21:38720514-38720224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:221
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):80, 45

               
               
               Conread position:240-534
               
               
               Cow position:chr21:8545755-8546049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):63, 45

               
               
               Conread position:240-535
               
               
               Cow position:chr21:13395846-13395565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:217
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):149, 36

               
               
               Conread position:240-539
               
               
               Cow position:chr21:21907177-21907466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):26, 13

               
               
               Conread position:240-539
               
               
               Cow position:chr21:28919267-28919561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:221
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):179, 12

               
               
               Conread position:240-562
               
               
               Cow position:chr21:11779273-11779594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):72, 93

               
               
               Conread position:240-578
               
               
               Cow position:chr21:40432729-40432368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:260
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):75, 217

               
               
               Conread position:240-590
               
               
               Cow position:chr21:6998206-6997846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 45

               
               
               Conread position:240-596
               
               
               Cow position:chr21:8207022-8206674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:256
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):184, 70

               
               
               Conread position:240-597
               
               
               Cow position:chr21:6713259-6713625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 45

               
               
               Conread position:240-605
               
               
               Cow position:chr21:10673375-10673024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 45

               
               
               Conread position:240-630
               
               
               Cow position:chr21:20260032-20260449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 216

               
               
               Conread position:240-640
               
               
               Cow position:chr21:12461704-12462109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 85

               
               
               Conread position:240-648
               
               
               Cow position:chr21:29978496-29978907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 70

               
               
               Conread position:240-666
               
               
               Cow position:chr21:40589215-40589647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 96

               
               
               Conread position:240-670
               
               
               Cow position:chr21:42841320-42841761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 298

               
               
               Conread position:240-672
               
               
               Cow position:chr21:5898144-5898568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 20

               
               
               Conread position:240-672
               
               
               Cow position:chr21:37480229-37479786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 88

               
               
               Conread position:240-672
               
               
               Cow position:chr21:39888461-39888914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 139

               
               
               Conread position:240-672
               
               
               Cow position:chr21:42501317-42500862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:240-673
               
               
               Cow position:chr21:641849-641413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 80

               
               
               Conread position:240-673
               
               
               Cow position:chr21:643584-643162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 9

               
               
               Conread position:240-673
               
               
               Cow position:chr21:4400058-4399628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 44

               
               
               Conread position:240-673
               
               
               Cow position:chr21:6051770-6051335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 181

               
               
               Conread position:240-673
               
               
               Cow position:chr21:28733647-28734083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 25

               
               
               Conread position:240-673
               
               
               Cow position:chr21:33982549-33982980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):243, 70

               
               
               Conread position:240-673
               
               
               Cow position:chr21:34738836-34738427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:288
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):369, 32

               
               
               Conread position:240-673
               
               
               Cow position:chr21:38449187-38449623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 74

               
               
               Conread position:240-673
               
               
               Cow position:chr21:38901028-38900603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 67

               
               
               Conread position:240-674
               
               
               Cow position:chr21:3585100-3585530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 9

               
               
               Conread position:240-675
               
               
               Cow position:chr21:5427191-5426770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 13

               
               
               Conread position:240-675
               
               
               Cow position:chr21:22193830-22194284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:302
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):74, 13

               
               
               Conread position:241-450
               
               
               Cow position:chr21:11182813-11182606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):177, 48

               
               
               Conread position:241-460
               
               
               Cow position:chr21:30938401-30938629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):6, 89

               
               
               Conread position:241-466
               
               
               Cow position:chr21:29658538-29658313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):106, 84

               
               
               Conread position:241-467
               
               
               Cow position:chr21:27677747-27677518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):85, 177

               
               
               Conread position:241-468
               
               
               Cow position:chr21:6851429-6851207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):177, 69

               
               
               Conread position:241-471
               
               
               Cow position:chr21:42145083-42144858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):176, 44

               
               
               Conread position:241-472
               
               
               Cow position:chr21:16498778-16498550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):167, 9

               
               
               Conread position:241-472
               
               
               Cow position:chr21:31279517-31279288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):174, 84

               
               
               Conread position:241-521
               
               
               Cow position:chr21:742537-742266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):232, 9

               
               
               Conread position:241-524
               
               
               Cow position:chr21:8430832-8431124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):9, 182

               
               
               Conread position:241-539
               
               
               Cow position:chr21:45835126-45835439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):129, 92

               
               
               Conread position:241-558
               
               
               Cow position:chr21:12354438-12354748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):31, 143

               
               
               Conread position:241-574
               
               
               Cow position:chr21:44214375-44214048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:249
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):177, 78

               
               
               Conread position:241-590
               
               
               Cow position:chr21:30835631-30835270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 182

               
               
               Conread position:241-600
               
               
               Cow position:chr21:30236578-30236919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):116, 43

               
               
               Conread position:241-648
               
               
               Cow position:chr21:10004619-10005032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 158

               
               
               Conread position:241-673
               
               
               Cow position:chr21:4281619-4282039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 78

               
               
               Conread position:241-673
               
               
               Cow position:chr21:46848869-46849294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 44

               
               
               Conread position:241-674
               
               
               Cow position:chr21:39403264-39403711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 84

               
               
               Conread position:241-676
               
               
               Cow position:chr21:36763326-36762879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 195

               
               
               Conread position:242-396
               
               
               Cow position:chr21:17857028-17856874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):85, 113

               
               
               Conread position:242-421
               
               
               Cow position:chr21:4109040-4108858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):86, 62

               
               
               Conread position:242-441
               
               
               Cow position:chr21:30658124-30657932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):173, 68

               
               
               Conread position:242-449
               
               
               Cow position:chr21:15012694-15012493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):172, 31

               
               
               Conread position:242-474
               
               
               Cow position:chr21:40475765-40475529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):5, 186

               
               
               Conread position:242-485
               
               
               Cow position:chr21:36682589-36682341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:187
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):51, 94

               
               
               Conread position:242-528
               
               
               Cow position:chr21:13842755-13842463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):52, 7

               
               
               Conread position:242-552
               
               
               Cow position:chr21:16152703-16152385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):184, 86

               
               
               Conread position:242-552
               
               
               Cow position:chr21:47713745-47714057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 7

               
               
               Conread position:242-600
               
               
               Cow position:chr21:938284-937932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 106

               
               
               Conread position:242-657
               
               
               Cow position:chr21:34654333-34653927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 78

               
               
               Conread position:242-667
               
               
               Cow position:chr21:28244731-28244311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 78

               
               
               Conread position:242-671
               
               
               Cow position:chr21:32339482-32339906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 43

               
               
               Conread position:242-673
               
               
               Cow position:chr21:802060-802465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 45

               
               
               Conread position:242-673
               
               
               Cow position:chr21:23587135-23586705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 65

               
               
               Conread position:242-673
               
               
               Cow position:chr21:27229540-27229966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 68

               
               
               Conread position:242-673
               
               
               Cow position:chr21:49699773-49700207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 97

               
               
               Conread position:243-412
               
               
               Cow position:chr21:8506285-8506453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:243-412
               
               
               Cow position:chr21:8509173-8509341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:243-434
               
               
               Cow position:chr21:6292011-6291817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:243-444
               
               
               Cow position:chr21:48482268-48482469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):64, 83

               
               
               Conread position:243-469
               
               
               Cow position:chr21:11678060-11678269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):210, 43

               
               
               Conread position:243-528
               
               
               Cow position:chr21:14126534-14126263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:244-535
               
               
               Cow position:chr21:868658-868958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 196

               
               
               Conread position:245-414
               
               
               Cow position:chr21:16119902-16120069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):84, 31

               
               
               Conread position:245-417
               
               
               Cow position:chr21:7208514-7208681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):13, 75

               
               
               Conread position:245-417
               
               
               Cow position:chr21:30970195-30970023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):83, 39

               
               
               Conread position:245-422
               
               
               Cow position:chr21:36121489-36121309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):81, 38

               
               
               Conread position:245-435
               
               
               Cow position:chr21:37495684-37495875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):143, 183

               
               
               Conread position:245-504
               
               
               Cow position:chr21:46599618-46599357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):173, 83

               
               
               Conread position:245-543
               
               
               Cow position:chr21:31159646-31159361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):81, 39

               
               
               Conread position:245-552
               
               
               Cow position:chr21:5465007-5464693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 82

               
               
               Conread position:245-563
               
               
               Cow position:chr21:15543979-15544283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:235
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):221, 31

               
               
               Conread position:245-587
               
               
               Cow position:chr21:22209983-22210333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 94

               
               
               Conread position:245-672
               
               
               Cow position:chr21:3236763-3236360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 69

               
               
               Conread position:245-672
               
               
               Cow position:chr21:36795884-36795433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 211

               
               
               Conread position:245-673
               
               
               Cow position:chr21:24598903-24598490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 32

               
               
               Conread position:245-673
               
               
               Cow position:chr21:30848688-30849110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 74

               
               
               Conread position:245-673
               
               
               Cow position:chr21:41974107-41974550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 179

               
               
               Conread position:246-412
               
               
               Cow position:chr21:7460864-7460700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:246-451
               
               
               Cow position:chr21:24875611-24875404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):165, 79

               
               
               Conread position:246-467
               
               
               Cow position:chr21:11353323-11353098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):17, 92

               
               
               Conread position:246-492
               
               
               Cow position:chr21:39319151-39319404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):72, 27

               
               
               Conread position:246-570
               
               
               Cow position:chr21:8349581-8349256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:243
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):154, 27

               
               
               Conread position:246-647
               
               
               Cow position:chr21:18318972-18318581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:265
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):73, 115

               
               
               Conread position:246-671
               
               
               Cow position:chr21:7710420-7709996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:284
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):52, 92

               
               
               Conread position:246-673
               
               
               Cow position:chr21:17184177-17183751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 60

               
               
               Conread position:246-673
               
               
               Cow position:chr21:23673004-23672572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 38

               
               
               Conread position:249-424
               
               
               Cow position:chr21:14516196-14516027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):156, 58

               
               
               Conread position:249-506
               
               
               Cow position:chr21:7169943-7169682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):165, 84

               
               
               Conread position:249-594
               
               
               Cow position:chr21:22121758-22121426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:243
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):278, 68

               
               
               Conread position:249-669
               
               
               Cow position:chr21:44565473-44565867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:249-673
               
               
               Cow position:chr21:11644710-11645140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 186

               
               
               Conread position:249-673
               
               
               Cow position:chr21:24858572-24858140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 86

               
               
               Conread position:249-673
               
               
               Cow position:chr21:47464863-47465292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 131

               
               
               Conread position:249-674
               
               
               Cow position:chr21:20160934-20160511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 27

               
               
               Conread position:250-411
               
               
               Cow position:chr21:21159058-21158905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:250-579
               
               
               Cow position:chr21:37014170-37014484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):166, 76

               
               
               Conread position:251-505
               
               
               Cow position:chr21:19240624-19240880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):168, 40

               
               
               Conread position:251-603
               
               
               Cow position:chr21:48637501-48637866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:244
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):75, 109

               
               
               Conread position:251-672
               
               
               Cow position:chr21:7673367-7672962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 68

               
               
               Conread position:251-672
               
               
               Cow position:chr21:9311309-9310875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:289
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):75, 103

               
               
               Conread position:251-675
               
               
               Cow position:chr21:7564064-7564495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:301
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):162, 22

               
               
               Conread position:252-397
               
               
               Cow position:chr21:40916734-40916591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:252-672
               
               
               Cow position:chr21:11739866-11740301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 34

               
               
               Conread position:252-673
               
               
               Cow position:chr21:17193495-17193931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 33

               
               
               Conread position:253-417
               
               
               Cow position:chr21:27568146-27567982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):66, 36

               
               
               Conread position:253-670
               
               
               Cow position:chr21:12087829-12087422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:284
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):54, 63

               
               
               Conread position:253-672
               
               
               Cow position:chr21:41580007-41579579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 44

               
               
               Conread position:253-673
               
               
               Cow position:chr21:27863267-27863691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 67

               
               
               Conread position:254-398
               
               
               Cow position:chr21:31258720-31258573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):56, 78

               
               
               Conread position:254-442
               
               
               Cow position:chr21:42017350-42017540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):59, 31

               
               
               Conread position:254-475
               
               
               Cow position:chr21:24266310-24266537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):66, 197

               
               
               Conread position:254-528
               
               
               Cow position:chr21:6317434-6317705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):47, 78

               
               
               Conread position:254-580
               
               
               Cow position:chr21:41107525-41107844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):48, 74

               
               
               Conread position:254-587
               
               
               Cow position:chr21:28237448-28237803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):72, 148

               
               
               Conread position:254-630
               
               
               Cow position:chr21:34151827-34151452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:275
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):47, 22

               
               
               Conread position:254-666
               
               
               Cow position:chr21:10114082-10114493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 77

               
               
               Conread position:254-673
               
               
               Cow position:chr21:8351043-8351475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 79

               
               
               Conread position:255-422
               
               
               Cow position:chr21:5214602-5214430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:255-577
               
               
               Cow position:chr21:10410473-10410139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:241
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):71, 30

               
               
               Conread position:257-385
               
               
               Cow position:chr21:37110914-37110791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:257-600
               
               
               Cow position:chr21:10561337-10561686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 76

               
               
               Conread position:257-645
               
               
               Cow position:chr21:7824942-7825319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 76

               
               
               Conread position:257-673
               
               
               Cow position:chr21:28810027-28810434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:291
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):160, 52

               
               
               Conread position:257-674
               
               
               Cow position:chr21:22861240-22860829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 50

               
               
               Conread position:258-552
               
               
               Cow position:chr21:976891-977198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):13, 171

               
               
               Conread position:258-673
               
               
               Cow position:chr21:14760804-14760409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 27

               
               
               Conread position:258-674
               
               
               Cow position:chr21:47763868-47764285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 29

               
               
               Conread position:259-403
               
               
               Cow position:chr21:7424767-7424912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):54, 71

               
               
               Conread position:259-673
               
               
               Cow position:chr21:3360770-3361186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 68

               
               
               Conread position:261-660
               
               
               Cow position:chr21:13840572-13840164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:274
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):72, 99

               
               
               Conread position:261-673
               
               
               Cow position:chr21:31253777-31253365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 66

               
               
               Conread position:262-519
               
               
               Cow position:chr21:828967-829227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):152, 86

               
               
               Conread position:262-673
               
               
               Cow position:chr21:19195918-19196338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 92

               
               
               Conread position:262-675
               
               
               Cow position:chr21:46912792-46912371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:279
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):26, 102

               
               
               Conread position:266-528
               
               
               Cow position:chr21:7377684-7377952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):62, 172

               
               
               Conread position:267-674
               
               
               Cow position:chr21:6624397-6623970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:286
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):59, 229

               
               
               Conread position:275-669
               
               
               Cow position:chr21:12801514-12801914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 165

               
               
               Conread position:275-673
               
               
               Cow position:chr21:28626466-28626070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 52

               
               
               Conread position:279-452
               
               
               Cow position:chr21:30243459-30243630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):135, 58

               
               
               Conread position:279-668
               
               
               Cow position:chr21:17642763-17643140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 46

               
               
               Conread position:279-673
               
               
               Cow position:chr21:19259042-19258655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):266, 48

               
               
               Conread position:281-640
               
               
               Cow position:chr21:28924330-28923978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 24

               
               
               Conread position:281-673
               
               
               Cow position:chr21:37344877-37345273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 35

               
               
               Conread position:284-676
               
               
               Cow position:chr21:10515022-10514634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:276
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):23, 38

               
               
               Conread position:287-697
               
               
               Cow position:chr21:10633421-10633834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 71

               
               
               Conread position:292-595
               
               
               Cow position:chr21:42022481-42022193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):120, 11

               
               
               Conread position:292-673
               
               
               Cow position:chr21:9990724-9990343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 139

               
               
               Conread position:293-673
               
               
               Cow position:chr21:28429657-28429278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:264
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):46, 130

               
               
               Conread position:294-619
               
               
               Cow position:chr21:25628699-25629029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:235
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):22, 75

               
               
               Conread position:297-422
               
               
               Cow position:chr21:40305151-40305027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:97
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:297-453
               
               
               Cow position:chr21:14228073-14228230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):121, 36

               
               
               Conread position:298-506
               
               
               Cow position:chr21:46132782-46132571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):13, 141

               
               
               Conread position:301-557
               
               
               Cow position:chr21:297945-297694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):116, 33

               
               
               Conread position:303-667
               
               
               Cow position:chr21:13727563-13727925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):156, 33

               
               
               Conread position:306-473
               
               
               Cow position:chr21:46451757-46451922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):131, 11

               
               
               Conread position:307-658
               
               
               Cow position:chr21:45920864-45921215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 10

               
               
               Conread position:308-419
               
               
               Cow position:chr21:42465987-42465874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:92
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:308-645
               
               
               Cow position:chr21:42007264-42007603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 127

               
               
               Conread position:308-656
               
               
               Cow position:chr21:24642708-24642364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 25

               
               
               Conread position:308-673
               
               
               Cow position:chr21:18790370-18790727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 19

               
               
               Conread position:308-674
               
               
               Cow position:chr21:42413898-42414275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 133

               
               
               Conread position:310-464
               
               
               Cow position:chr21:13164053-13163898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):109, 27

               
               
               Conread position:310-470
               
               
               Cow position:chr21:5341899-5342061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):8, 25

               
               
               Conread position:310-492
               
               
               Cow position:chr21:19359982-19360167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):104, 23

               
               
               Conread position:310-528
               
               
               Cow position:chr21:10538061-10538275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):105, 24

               
               
               Conread position:310-539
               
               
               Cow position:chr21:43259413-43259186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):108, 55

               
               
               Conread position:310-666
               
               
               Cow position:chr21:46264364-46264012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:259
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):104, 24

               
               
               Conread position:310-671
               
               
               Cow position:chr21:13127903-13128263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 48

               
               
               Conread position:310-673
               
               
               Cow position:chr21:13365538-13365173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 125

               
               
               Conread position:310-690
               
               
               Cow position:chr21:30250010-30250397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):290, 34

               
               
               Conread position:311-553
               
               
               Cow position:chr21:29014365-29014610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):106, 120

               
               
               Conread position:311-659
               
               
               Cow position:chr21:18800341-18800686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:246
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):107, 22

               
               
               Conread position:311-663
               
               
               Cow position:chr21:27624892-27624551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 17

               
               
               Conread position:311-667
               
               
               Cow position:chr21:3818401-3818051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:253
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):113, 22

               
               
               Conread position:311-671
               
               
               Cow position:chr21:713136-712764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:265
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):22, 30

               
               
               Conread position:311-673
               
               
               Cow position:chr21:33264037-33263678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 25

               
               
               Conread position:311-674
               
               
               Cow position:chr21:5392344-5392715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 22

               
               
               Conread position:311-675
               
               
               Cow position:chr21:33912-33548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 22

               
               
               Conread position:312-652
               
               
               Cow position:chr21:10823751-10823403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:245
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):215, 15

               
               
               Conread position:312-672
               
               
               Cow position:chr21:27341405-27341767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:263
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):166, 9

               
               
               Conread position:312-674
               
               
               Cow position:chr21:36297686-36297306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 119

               
               
               Conread position:313-605
               
               
               Cow position:chr21:2658002-2657712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):18, 39

               
               
               Conread position:314-565
               
               
               Cow position:chr21:2809975-2810229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):82, 19

               
               
               Conread position:314-673
               
               
               Cow position:chr21:26647826-26648177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:254
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):166, 19

               
               
               Conread position:314-673
               
               
               Cow position:chr21:32237470-32237126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:253
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):213, 121

               
               
               Conread position:314-673
               
               
               Cow position:chr21:45473567-45473928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 105

               
               
               Conread position:314-674
               
               
               Cow position:chr21:29485168-29484811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 19

               
               
               Conread position:315-640
               
               
               Cow position:chr21:11360215-11359899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:243
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):109, 18

               
               
               Conread position:315-673
               
               
               Cow position:chr21:33210379-33210027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 124

               
               
               Conread position:315-675
               
               
               Cow position:chr21:41598000-41597642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 18

               
               
               Conread position:316-463
               
               
               Cow position:chr21:7584038-7583890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):100, 17

               
               
               Conread position:317-473
               
               
               Cow position:chr21:11057694-11057848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):88, 16

               
               
               Conread position:317-673
               
               
               Cow position:chr21:33563190-33562844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 16

               
               
               Conread position:318-663
               
               
               Cow position:chr21:25383212-25382848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 15

               
               
               Conread position:318-673
               
               
               Cow position:chr21:5153806-5153446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:252
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):111, 15

               
               
               Conread position:318-674
               
               
               Cow position:chr21:30990103-30990441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):166, 17

               
               
               Conread position:318-686
               
               
               Cow position:chr21:44671931-44671568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 73

               
               
               Conread position:319-668
               
               
               Cow position:chr21:15611325-15610985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 34

               
               
               Conread position:319-675
               
               
               Cow position:chr21:21077495-21077157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 82

               
               
               Conread position:319-687
               
               
               Cow position:chr21:8125620-8125985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:250
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):99, 17

               
               
               Conread position:320-670
               
               
               Cow position:chr21:10001259-10000912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 13

               
               
               Conread position:320-673
               
               
               Cow position:chr21:1059260-1058905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 93

               
               
               Conread position:320-673
               
               
               Cow position:chr21:42384693-42384334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 164

               
               
               Conread position:321-673
               
               
               Cow position:chr21:31691667-31691307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 96

               
               
               Conread position:322-672
               
               
               Cow position:chr21:396049-395705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 11

               
               
               Conread position:323-601
               
               
               Cow position:chr21:3400651-3400937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):95, 10

               
               
               Conread position:323-667
               
               
               Cow position:chr21:7581724-7582075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 10

               
               
               Conread position:323-685
               
               
               Cow position:chr21:28191213-28190844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 10

               
               
               Conread position:324-596
               
               
               Cow position:chr21:45262629-45262910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):94, 111

               
               
               Conread position:324-605
               
               
               Cow position:chr21:21077780-21077494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):145, 33

               
               
               Conread position:325-535
               
               
               Cow position:chr21:734768-734563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):100, 9

               
               
               Conread position:327-588
               
               
               Cow position:chr21:40769471-40769219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):89, 98

               
               
               Conread position:327-634
               
               
               Cow position:chr21:46551924-46552233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):33, 112

               
               
               Conread position:329-539
               
               
               Cow position:chr21:471850-471640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):90, 35

               
               
               Conread position:331-553
               
               
               Cow position:chr21:40192131-40192351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):85, 13

               
               
               Conread position:331-674
               
               
               Cow position:chr21:8235388-8235717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:237
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):192, 76

               
               
               Conread position:334-671
               
               
               Cow position:chr21:45915547-45915873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:231
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):101, 79

               
               
               Conread position:337-671
               
               
               Cow position:chr21:38121269-38120938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 87

               
               
               Conread position:337-673
               
               
               Cow position:chr21:15911568-15911229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 79

               
               
               Conread position:337-673
               
               
               Cow position:chr21:30606918-30607259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 83

               
               
               Conread position:337-673
               
               
               Cow position:chr21:33791214-33791539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:247
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):190, 19

               
               
               Conread position:337-673
               
               
               Cow position:chr21:44515440-44515103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:255
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):30, 109

               
               
               Conread position:337-675
               
               
               Cow position:chr21:724711-725065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 79

               
               
               Conread position:337-712
               
               
               Cow position:chr21:8549847-8549467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:252
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):81, 19

               
               
               Conread position:338-673
               
               
               Cow position:chr21:5567153-5566818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:241
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):78, 69

               
               
               Conread position:339-517
               
               
               Cow position:chr21:13036740-13036915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:340-651
               
               
               Cow position:chr21:48176985-48176677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:221
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):206, 66

               
               
               Conread position:343-670
               
               
               Cow position:chr21:4998333-4998655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:230
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):76, 110

               
               
               Conread position:344-522
               
               
               Cow position:chr21:20183232-20183049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):70, 91

               
               
               Conread position:344-633
               
               
               Cow position:chr21:20418521-20418821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 79

               
               
               Conread position:344-673
               
               
               Cow position:chr21:45330446-45330779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 69

               
               
               Conread position:345-588
               
               
               Cow position:chr21:35900001-35899759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):42, 46

               
               
               Conread position:347-673
               
               
               Cow position:chr21:41878627-41878305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:239
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):72, 32

               
               
               Conread position:348-673
               
               
               Cow position:chr21:17709978-17709655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):131, 65

               
               
               Conread position:349-672
               
               
               Cow position:chr21:19363304-19363634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 15

               
               
               Conread position:353-673
               
               
               Cow position:chr21:42540070-42540391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 149

               
               
               Conread position:354-663
               
               
               Cow position:chr21:39401741-39401433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 33

               
               
               Conread position:354-671
               
               
               Cow position:chr21:1591705-1591379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 85

               
               
               Conread position:355-672
               
               
               Cow position:chr21:16187657-16187970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:238
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):58, 83

               
               
               Conread position:357-671
               
               
               Cow position:chr21:43357108-43357430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 80

               
               
               Conread position:358-640
               
               
               Cow position:chr21:11251016-11250727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):158, 55

               
               
               Conread position:359-673
               
               
               Cow position:chr21:46144105-46143772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 79

               
               
               Conread position:361-616
               
               
               Cow position:chr21:36789939-36789679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 166

               
               
               Conread position:364-671
               
               
               Cow position:chr21:23499688-23499993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):111, 13

               
               
               Conread position:370-673
               
               
               Cow position:chr21:28512649-28512361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 49

               
               
               Conread position:371-672
               
               
               Cow position:chr21:10601241-10601539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:227
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):47, 67

               
               
               Conread position:373-673
               
               
               Cow position:chr21:5636588-5636892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:220
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):46, 108

               
               
               Conread position:379-574
               
               
               Cow position:chr21:33359917-33360110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):148, 10

               
               
               Conread position:379-630
               
               
               Cow position:chr21:17856670-17856415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:192
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):39, 46

               
               
               Conread position:400-652
               
               
               Cow position:chr21:11456704-11456960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):31, 24

               
               
               Conread position:401-673
               
               
               Cow position:chr21:28882239-28881971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:193
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):29, 37

               
               
               Conread position:402-674
               
               
               Cow position:chr21:24765386-24765111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):23, 71

               
               
               Conread position:404-673
               
               
               Cow position:chr21:30150166-30150437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):63, 11

               
               
               Conread position:405-641
               
               
               Cow position:chr21:2294081-2293853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):7, 31

               
               
               Conread position:408-692
               
               
               Cow position:chr21:6102164-6102457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:218
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):11, 30

               
               
               Conread position:409-670
               
               
               Cow position:chr21:12960806-12961071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 15

               
               
               Conread position:417-600
               
               
               Cow position:chr21:29224775-29224964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):110, 18

               
               
               Conread position:417-665
               
               
               Cow position:chr21:44109088-44108844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):65, 19

               
               
               Conread position:417-670
               
               
               Cow position:chr21:13898273-13898020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):63, 19

               
               
               Conread position:417-674
               
               
               Cow position:chr21:5454906-5455157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):110, 19

               
               
               Conread position:418-675
               
               
               Cow position:chr21:8985636-8985376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:206
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):50, 17

               
               
               Conread position:419-605
               
               
               Cow position:chr21:18041764-18041955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):65, 16

               
               
               Conread position:422-673
               
               
               Cow position:chr21:42913663-42913917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 5

               
               
               Conread position:423-637
               
               
               Cow position:chr21:14515927-14515710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):107, 54

               
               
               Conread position:428-605
               
               
               Cow position:chr21:9979895-9980071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):41, 53

               
               
               Conread position:429-674
               
               
               Cow position:chr21:17410583-17410831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):6, 15

               
               
               Conread position:434-597
               
               
               Cow position:chr21:4568354-4568186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):47, 88

               
               
               Conread position:434-664
               
               
               Cow position:chr21:36793964-36793730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):49, 90

               
               
               Conread position:434-670
               
               
               Cow position:chr21:21480115-21480351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):35, 47

               
               
               Conread position:434-673
               
               
               Cow position:chr21:911897-912138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):50, 36

               
               
               Conread position:436-604
               
               
               Cow position:chr21:39809961-39809793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):49, 85

               
               
               Conread position:436-673
               
               
               Cow position:chr21:23984215-23984455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):91, 61

               
               
               Conread position:436-673
               
               
               Cow position:chr21:27743816-27743571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:187
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):44, 155

               
               
               Conread position:439-674
               
               
               Cow position:chr21:18495036-18494793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:184
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):9, 31

               
               
               Conread position:439-675
               
               
               Cow position:chr21:34053129-34053360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):89, 81

               
               
               Conread position:440-675
               
               
               Cow position:chr21:31676562-31676325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):54, 80

               
               
               Conread position:441-673
               
               
               Cow position:chr21:9710644-9710874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):26, 62

               
               
               Conread position:463-671
               
               
               Cow position:chr21:48484411-48484613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):64, 18

               
               
               Conread position:469-667
               
               
               Cow position:chr21:5344692-5344490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):16, 100

               
               
               Conread position:475-675
               
               
               Cow position:chr21:8618306-8618101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):9, 46

               
               
               Conread position:478-675
               
               
               Cow position:chr21:9278406-9278199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:163-594
               
               
               Cow position:chr22:3534205-3533781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 20

               
               
               Conread position:180-667
               
               
               Cow position:chr22:26166359-26166848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:328
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):8, 94

               
               
               Conread position:203-470
               
               
               Cow position:chr22:11352210-11352486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):21, 228

               
               
               Conread position:213-455
               
               
               Cow position:chr22:2876571-2876817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):8, 118

               
               
               Conread position:222-478
               
               
               Cow position:chr22:23358368-23358105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):17, 31

               
               
               Conread position:224-408
               
               
               Cow position:chr22:18145747-18145566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:225-410
               
               
               Cow position:chr22:23762635-23762823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):8, 107

               
               
               Conread position:230-673
               
               
               Cow position:chr22:8418671-8418230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:299
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):96, 19

               
               
               Conread position:231-505
               
               
               Cow position:chr22:12157641-12157913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:204
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):17, 47

               
               
               Conread position:233-417
               
               
               Cow position:chr22:29219695-29219884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):9, 144

               
               
               Conread position:233-472
               
               
               Cow position:chr22:24134117-24134360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):10, 207

               
               
               Conread position:233-512
               
               
               Cow position:chr22:42618201-42617921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:211
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):14, 35

               
               
               Conread position:233-634
               
               
               Cow position:chr22:2524155-2523763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 74

               
               
               Conread position:233-673
               
               
               Cow position:chr22:19787496-19787918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:278
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):233, 77

               
               
               Conread position:234-411
               
               
               Cow position:chr22:24047417-24047584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:234-412
               
               
               Cow position:chr22:1304351-1304527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:234-412
               
               
               Cow position:chr22:13951467-13951289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):13, 95

               
               
               Conread position:234-417
               
               
               Cow position:chr22:11497698-11497515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):97, 19

               
               
               Conread position:234-422
               
               
               Cow position:chr22:30615934-30615745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):93, 18

               
               
               Conread position:234-422
               
               
               Cow position:chr22:45683830-45684024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):75, 51

               
               
               Conread position:234-423
               
               
               Cow position:chr22:33373447-33373253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):91, 41

               
               
               Conread position:234-445
               
               
               Cow position:chr22:1523426-1523209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):79, 157

               
               
               Conread position:234-466
               
               
               Cow position:chr22:26804026-26803788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):77, 51

               
               
               Conread position:234-466
               
               
               Cow position:chr22:47562916-47562673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:234-473
               
               
               Cow position:chr22:6289296-6289540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):84, 18

               
               
               Conread position:234-479
               
               
               Cow position:chr22:33985603-33985841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):58, 89

               
               
               Conread position:234-484
               
               
               Cow position:chr22:3470495-3470239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):14, 75

               
               
               Conread position:234-528
               
               
               Cow position:chr22:24903796-24903497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 94

               
               
               Conread position:234-535
               
               
               Cow position:chr22:12829406-12829711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:222
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):97, 72

               
               
               Conread position:234-539
               
               
               Cow position:chr22:23735808-23736115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):66, 50

               
               
               Conread position:234-548
               
               
               Cow position:chr22:25254378-25254064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:225
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):81, 119

               
               
               Conread position:234-579
               
               
               Cow position:chr22:15668279-15668622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:246
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):240, 87

               
               
               Conread position:234-586
               
               
               Cow position:chr22:1563036-1563405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:258
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):94, 186

               
               
               Conread position:234-655
               
               
               Cow position:chr22:6149184-6149606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 118

               
               
               Conread position:234-663
               
               
               Cow position:chr22:24583869-24584271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:299
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):109, 15

               
               
               Conread position:234-670
               
               
               Cow position:chr22:16251360-16251802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 210

               
               
               Conread position:234-671
               
               
               Cow position:chr22:3301132-3301560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 193

               
               
               Conread position:234-672
               
               
               Cow position:chr22:6092460-6092881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:296
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):102, 18

               
               
               Conread position:234-672
               
               
               Cow position:chr22:23180843-23181273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 18

               
               
               Conread position:234-673
               
               
               Cow position:chr22:3987726-3987274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:297
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):92, 121

               
               
               Conread position:234-673
               
               
               Cow position:chr22:4563560-4563124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 76

               
               
               Conread position:234-673
               
               
               Cow position:chr22:5282716-5282269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:301
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):76, 18

               
               
               Conread position:234-673
               
               
               Cow position:chr22:6215354-6215792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 15

               
               
               Conread position:234-673
               
               
               Cow position:chr22:10122571-10122150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 15

               
               
               Conread position:234-673
               
               
               Cow position:chr22:25917248-25916804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:285
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):61, 120

               
               
               Conread position:234-673
               
               
               Cow position:chr22:27819200-27818765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:303
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):235, 19

               
               
               Conread position:234-673
               
               
               Cow position:chr22:34441429-34441872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 19

               
               
               Conread position:234-674
               
               
               Cow position:chr22:4989959-4990411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:297
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):21, 125

               
               
               Conread position:234-674
               
               
               Cow position:chr22:25247112-25246670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 18

               
               
               Conread position:234-675
               
               
               Cow position:chr22:6709587-6710015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 16

               
               
               Conread position:234-675
               
               
               Cow position:chr22:26786563-26786113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 74

               
               
               Conread position:234-675
               
               
               Cow position:chr22:39696501-39696056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:319
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):164, 73

               
               
               Conread position:234-687
               
               
               Cow position:chr22:6494380-6493918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 216

               
               
               Conread position:234-687
               
               
               Cow position:chr22:36560447-36560912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:312
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):60, 19

               
               
               Conread position:235-411
               
               
               Cow position:chr22:43730485-43730312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:235-412
               
               
               Cow position:chr22:2201936-2201766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:235-413
               
               
               Cow position:chr22:33031011-33030823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):72, 14

               
               
               Conread position:235-417
               
               
               Cow position:chr22:16346595-16346417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:235-422
               
               
               Cow position:chr22:7518757-7518570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):183, 93

               
               
               Conread position:235-447
               
               
               Cow position:chr22:11189232-11189020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):119, 14

               
               
               Conread position:235-467
               
               
               Cow position:chr22:10557474-10557249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):183, 18

               
               
               Conread position:235-511
               
               
               Cow position:chr22:1588497-1588217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):93, 17

               
               
               Conread position:235-519
               
               
               Cow position:chr22:13891778-13891484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):116, 98

               
               
               Conread position:235-528
               
               
               Cow position:chr22:7140850-7140550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:221
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:235-556
               
               
               Cow position:chr22:38320503-38320798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):8, 76

               
               
               Conread position:235-592
               
               
               Cow position:chr22:33399286-33399642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 15

               
               
               Conread position:235-606
               
               
               Cow position:chr22:37030321-37030695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:255
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):169, 50

               
               
               Conread position:235-671
               
               
               Cow position:chr22:8412732-8412288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 14

               
               
               Conread position:235-672
               
               
               Cow position:chr22:24066042-24066473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 14

               
               
               Conread position:235-673
               
               
               Cow position:chr22:7082232-7081787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:296
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):36, 136

               
               
               Conread position:235-673
               
               
               Cow position:chr22:16533274-16532842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 17

               
               
               Conread position:235-674
               
               
               Cow position:chr22:25221701-25222141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 12

               
               
               Conread position:235-683
               
               
               Cow position:chr22:43812237-43812668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 77

               
               
               Conread position:236-385
               
               
               Cow position:chr22:29546840-29546692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):7, 93

               
               
               Conread position:236-404
               
               
               Cow position:chr22:9075612-9075441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):42, 16

               
               
               Conread position:236-411
               
               
               Cow position:chr22:36762239-36762065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):88, 17

               
               
               Conread position:236-421
               
               
               Cow position:chr22:9735470-9735285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):182, 98

               
               
               Conread position:236-430
               
               
               Cow position:chr22:26189073-26188875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):84, 16

               
               
               Conread position:236-442
               
               
               Cow position:chr22:3257463-3257664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):7, 60

               
               
               Conread position:236-451
               
               
               Cow position:chr22:16813998-16813783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):7, 92

               
               
               Conread position:236-456
               
               
               Cow position:chr22:24542566-24542342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):134, 101

               
               
               Conread position:236-461
               
               
               Cow position:chr22:26112569-26112341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):78, 112

               
               
               Conread position:236-462
               
               
               Cow position:chr22:1714660-1714891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):90, 202

               
               
               Conread position:236-463
               
               
               Cow position:chr22:14600132-14600361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):89, 18

               
               
               Conread position:236-472
               
               
               Cow position:chr22:1776264-1776023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):74, 16

               
               
               Conread position:236-479
               
               
               Cow position:chr22:23372657-23372906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):69, 193

               
               
               Conread position:236-501
               
               
               Cow position:chr22:1501085-1500823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):9, 36

               
               
               Conread position:236-571
               
               
               Cow position:chr22:27681925-27681574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:252
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):64, 16

               
               
               Conread position:236-574
               
               
               Cow position:chr22:11766847-11767193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:240
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):82, 16

               
               
               Conread position:236-592
               
               
               Cow position:chr22:10416428-10416054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:267
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):98, 50

               
               
               Conread position:236-623
               
               
               Cow position:chr22:36432770-36433158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 22

               
               
               Conread position:236-630
               
               
               Cow position:chr22:4373237-4372846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 38

               
               
               Conread position:236-672
               
               
               Cow position:chr22:6610157-6610591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 13

               
               
               Conread position:236-673
               
               
               Cow position:chr22:10295229-10294812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 13

               
               
               Conread position:236-673
               
               
               Cow position:chr22:25742764-25743190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 37

               
               
               Conread position:236-674
               
               
               Cow position:chr22:11131070-11130632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 13

               
               
               Conread position:236-676
               
               
               Cow position:chr22:22613303-22612871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 13

               
               
               Conread position:236-687
               
               
               Cow position:chr22:19341395-19340946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 13

               
               
               Conread position:237-411
               
               
               Cow position:chr22:1074467-1074291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):87, 15

               
               
               Conread position:237-421
               
               
               Cow position:chr22:12637801-12637618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):92, 16

               
               
               Conread position:237-459
               
               
               Cow position:chr22:19413834-19414060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):88, 15

               
               
               Conread position:237-463
               
               
               Cow position:chr22:24802489-24802727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):70, 131

               
               
               Conread position:237-481
               
               
               Cow position:chr22:6176082-6176330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:185
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):73, 12

               
               
               Conread position:237-484
               
               
               Cow position:chr22:39446494-39446245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):73, 15

               
               
               Conread position:237-528
               
               
               Cow position:chr22:25809081-25809362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):178, 12

               
               
               Conread position:237-578
               
               
               Cow position:chr22:1035621-1035965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:236
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):187, 15

               
               
               Conread position:237-593
               
               
               Cow position:chr22:30818409-30818049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 12

               
               
               Conread position:237-610
               
               
               Cow position:chr22:32698964-32698581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 179

               
               
               Conread position:237-667
               
               
               Cow position:chr22:15950190-15950609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 13

               
               
               Conread position:237-673
               
               
               Cow position:chr22:37139629-37139209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:297
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):161, 36

               
               
               Conread position:237-673
               
               
               Cow position:chr22:38438957-38439396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 36

               
               
               Conread position:237-674
               
               
               Cow position:chr22:10338905-10339352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 189

               
               
               Conread position:237-675
               
               
               Cow position:chr22:3842818-3842386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 67

               
               
               Conread position:237-675
               
               
               Cow position:chr22:40387351-40386932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:296
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):104, 15

               
               
               Conread position:238-409
               
               
               Cow position:chr22:10594811-10594637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:238-417
               
               
               Cow position:chr22:12673133-12673314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):80, 14

               
               
               Conread position:238-422
               
               
               Cow position:chr22:25312714-25312526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):48, 15

               
               
               Conread position:238-446
               
               
               Cow position:chr22:24071458-24071657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:238-461
               
               
               Cow position:chr22:4736225-4735998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):78, 14

               
               
               Conread position:238-468
               
               
               Cow position:chr22:16235302-16235537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):71, 14

               
               
               Conread position:238-468
               
               
               Cow position:chr22:16806788-16806563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):10, 73

               
               
               Conread position:238-506
               
               
               Cow position:chr22:21527108-21526848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):175, 11

               
               
               Conread position:238-511
               
               
               Cow position:chr22:43965902-43965621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):88, 11

               
               
               Conread position:238-519
               
               
               Cow position:chr22:30607058-30606780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):88, 14

               
               
               Conread position:238-522
               
               
               Cow position:chr22:16541450-16541739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):62, 14

               
               
               Conread position:238-538
               
               
               Cow position:chr22:27828576-27828281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:218
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):185, 14

               
               
               Conread position:238-559
               
               
               Cow position:chr22:12929079-12929403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):88, 14

               
               
               Conread position:238-569
               
               
               Cow position:chr22:31599634-31599312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:241
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):11, 99

               
               
               Conread position:238-613
               
               
               Cow position:chr22:12800874-12800481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:263
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):99, 292

               
               
               Conread position:238-626
               
               
               Cow position:chr22:16291734-16292112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:268
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):177, 14

               
               
               Conread position:238-643
               
               
               Cow position:chr22:32326998-32326593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:279
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):62, 14

               
               
               Conread position:238-650
               
               
               Cow position:chr22:2643312-2642902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:277
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):69, 16

               
               
               Conread position:238-663
               
               
               Cow position:chr22:18838450-18838020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 87

               
               
               Conread position:238-672
               
               
               Cow position:chr22:46665297-46665739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:288
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):87, 14

               
               
               Conread position:238-673
               
               
               Cow position:chr22:1065306-1064897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:300
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):89, 14

               
               
               Conread position:238-673
               
               
               Cow position:chr22:2095755-2095311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:282
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):76, 15

               
               
               Conread position:238-673
               
               
               Cow position:chr22:5291054-5290605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 17

               
               
               Conread position:238-673
               
               
               Cow position:chr22:11147108-11146664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:299
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):174, 14

               
               
               Conread position:238-673
               
               
               Cow position:chr22:15490854-15490421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 11

               
               
               Conread position:238-673
               
               
               Cow position:chr22:18193666-18193216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:284
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):88, 14

               
               
               Conread position:238-673
               
               
               Cow position:chr22:39507839-39508272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 122

               
               
               Conread position:238-674
               
               
               Cow position:chr22:22860711-22861151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 97

               
               
               Conread position:238-675
               
               
               Cow position:chr22:2470038-2470487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:293
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):69, 120

               
               
               Conread position:239-410
               
               
               Cow position:chr22:24890419-24890249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:239-411
               
               
               Cow position:chr22:1552094-1551928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:239-416
               
               
               Cow position:chr22:35627549-35627370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):87, 118

               
               
               Conread position:239-421
               
               
               Cow position:chr22:45012563-45012737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):62, 46

               
               
               Conread position:239-422
               
               
               Cow position:chr22:6106172-6106361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:239-422
               
               
               Cow position:chr22:45788805-45788625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):40, 84

               
               
               Conread position:239-427
               
               
               Cow position:chr22:2704498-2704309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):95, 186

               
               
               Conread position:239-431
               
               
               Cow position:chr22:6372161-6372342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):118, 30

               
               
               Conread position:239-431
               
               
               Cow position:chr22:23630157-23630347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):180, 38

               
               
               Conread position:239-432
               
               
               Cow position:chr22:6486163-6485968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):79, 97

               
               
               Conread position:239-439
               
               
               Cow position:chr22:35578576-35578781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):8, 100

               
               
               Conread position:239-452
               
               
               Cow position:chr22:14488137-14487919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):87, 207

               
               
               Conread position:239-460
               
               
               Cow position:chr22:14641657-14641880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):79, 136

               
               
               Conread position:239-462
               
               
               Cow position:chr22:28937743-28937958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):180, 68

               
               
               Conread position:239-468
               
               
               Cow position:chr22:3430394-3430157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):88, 113

               
               
               Conread position:239-476
               
               
               Cow position:chr22:2100750-2100986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):175, 81

               
               
               Conread position:239-500
               
               
               Cow position:chr22:8540075-8539823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):8, 88

               
               
               Conread position:239-512
               
               
               Cow position:chr22:1106269-1105985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:239-513
               
               
               Cow position:chr22:22013948-22013672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):165, 95

               
               
               Conread position:239-522
               
               
               Cow position:chr22:1858521-1858246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):185, 37

               
               
               Conread position:239-527
               
               
               Cow position:chr22:17652631-17652342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 81

               
               
               Conread position:239-539
               
               
               Cow position:chr22:6852382-6852687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):61, 198

               
               
               Conread position:239-552
               
               
               Cow position:chr22:5837460-5837152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:230
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):176, 83

               
               
               Conread position:239-566
               
               
               Cow position:chr22:1984056-1983721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:240
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):85, 201

               
               
               Conread position:239-614
               
               
               Cow position:chr22:10567520-10567884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 34

               
               
               Conread position:239-624
               
               
               Cow position:chr22:16340053-16339698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):65, 52

               
               
               Conread position:239-667
               
               
               Cow position:chr22:36539460-36539905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 68

               
               
               Conread position:239-671
               
               
               Cow position:chr22:4108529-4108975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:304
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):94, 124

               
               
               Conread position:239-672
               
               
               Cow position:chr22:1326617-1326181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 34

               
               
               Conread position:239-672
               
               
               Cow position:chr22:29954815-29955236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 73

               
               
               Conread position:239-673
               
               
               Cow position:chr22:6720882-6721304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 163

               
               
               Conread position:239-673
               
               
               Cow position:chr22:8883209-8882787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):246, 86

               
               
               Conread position:239-673
               
               
               Cow position:chr22:11696996-11697446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 34

               
               
               Conread position:239-673
               
               
               Cow position:chr22:14091022-14091470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:296
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):95, 118

               
               
               Conread position:239-673
               
               
               Cow position:chr22:18259415-18258990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 74

               
               
               Conread position:239-673
               
               
               Cow position:chr22:25943658-25943243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 46

               
               
               Conread position:239-674
               
               
               Cow position:chr22:9127597-9127166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 51

               
               
               Conread position:239-674
               
               
               Cow position:chr22:9372725-9372280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 100

               
               
               Conread position:239-675
               
               
               Cow position:chr22:14690760-14691216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 204

               
               
               Conread position:239-675
               
               
               Cow position:chr22:26134022-26134475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 124

               
               
               Conread position:239-675
               
               
               Cow position:chr22:29642311-29641870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 93

               
               
               Conread position:239-675
               
               
               Cow position:chr22:38313275-38313704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:288
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):98, 236

               
               
               Conread position:239-675
               
               
               Cow position:chr22:38939753-38940189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 46

               
               
               Conread position:239-675
               
               
               Cow position:chr22:39472162-39472616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 124

               
               
               Conread position:239-692
               
               
               Cow position:chr22:18926555-18926093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 26

               
               
               Conread position:239-693
               
               
               Cow position:chr22:4060749-4061202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 95

               
               
               Conread position:240-376
               
               
               Cow position:chr22:1987169-1987034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:240-412
               
               
               Cow position:chr22:12741085-12741246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:240-417
               
               
               Cow position:chr22:11039656-11039476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):68, 120

               
               
               Conread position:240-423
               
               
               Cow position:chr22:16564342-16564163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):101, 13

               
               
               Conread position:240-427
               
               
               Cow position:chr22:12777186-12777366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):175, 67

               
               
               Conread position:240-431
               
               
               Cow position:chr22:9279218-9279031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):61, 13

               
               
               Conread position:240-451
               
               
               Cow position:chr22:7584045-7584251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:240-452
               
               
               Cow position:chr22:26233832-26233617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):10, 196

               
               
               Conread position:240-456
               
               
               Cow position:chr22:26417478-26417263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):178, 75

               
               
               Conread position:240-463
               
               
               Cow position:chr22:4310171-4310398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):55, 33

               
               
               Conread position:240-467
               
               
               Cow position:chr22:27944293-27944047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:240-468
               
               
               Cow position:chr22:26056669-26056897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):174, 29

               
               
               Conread position:240-482
               
               
               Cow position:chr22:33948779-33949017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):94, 70

               
               
               Conread position:240-487
               
               
               Cow position:chr22:4656849-4657094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):175, 12

               
               
               Conread position:240-506
               
               
               Cow position:chr22:2109431-2109694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):8, 85

               
               
               Conread position:240-510
               
               
               Cow position:chr22:12188276-12188554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):75, 202

               
               
               Conread position:240-510
               
               
               Cow position:chr22:12195362-12195641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:206
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):75, 203

               
               
               Conread position:240-512
               
               
               Cow position:chr22:7832152-7832423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):51, 9

               
               
               Conread position:240-524
               
               
               Cow position:chr22:12981527-12981812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:204
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):76, 89

               
               
               Conread position:240-527
               
               
               Cow position:chr22:24336742-24336436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):51, 212

               
               
               Conread position:240-539
               
               
               Cow position:chr22:285169-285463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:214
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):173, 146

               
               
               Conread position:240-539
               
               
               Cow position:chr22:4132775-4132467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):86, 107

               
               
               Conread position:240-539
               
               
               Cow position:chr22:43237203-43237511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 198

               
               
               Conread position:240-549
               
               
               Cow position:chr22:15914849-15915160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):86, 13

               
               
               Conread position:240-552
               
               
               Cow position:chr22:34619007-34618679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:233
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):74, 202

               
               
               Conread position:240-564
               
               
               Cow position:chr22:35029457-35029136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):175, 70

               
               
               Conread position:240-575
               
               
               Cow position:chr22:16094708-16095045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:238
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):178, 123

               
               
               Conread position:240-592
               
               
               Cow position:chr22:8800248-8800603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):18, 166

               
               
               Conread position:240-605
               
               
               Cow position:chr22:16823315-16822929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:271
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):77, 150

               
               
               Conread position:240-609
               
               
               Cow position:chr22:964975-965353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:253
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):86, 21

               
               
               Conread position:240-628
               
               
               Cow position:chr22:12803190-12803578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 84

               
               
               Conread position:240-629
               
               
               Cow position:chr22:11601232-11600840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:275
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):89, 13

               
               
               Conread position:240-630
               
               
               Cow position:chr22:12316005-12315616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 66

               
               
               Conread position:240-630
               
               
               Cow position:chr22:44410914-44410541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:271
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):175, 85

               
               
               Conread position:240-646
               
               
               Cow position:chr22:30471500-30471899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:284
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):79, 95

               
               
               Conread position:240-659
               
               
               Cow position:chr22:5616493-5616075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 13

               
               
               Conread position:240-663
               
               
               Cow position:chr22:11613624-11613193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 196

               
               
               Conread position:240-665
               
               
               Cow position:chr22:12678223-12678651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 196

               
               
               Conread position:240-670
               
               
               Cow position:chr22:8138058-8138493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:289
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):65, 9

               
               
               Conread position:240-670
               
               
               Cow position:chr22:25236931-25237376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 135

               
               
               Conread position:240-671
               
               
               Cow position:chr22:8324446-8324009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 127

               
               
               Conread position:240-671
               
               
               Cow position:chr22:12573403-12572967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 169

               
               
               Conread position:240-671
               
               
               Cow position:chr22:17152886-17152443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 202

               
               
               Conread position:240-672
               
               
               Cow position:chr22:534687-534256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 55

               
               
               Conread position:240-672
               
               
               Cow position:chr22:7882748-7882313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 65

               
               
               Conread position:240-672
               
               
               Cow position:chr22:21890168-21890597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 34

               
               
               Conread position:240-673
               
               
               Cow position:chr22:1975818-1975374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 160

               
               
               Conread position:240-673
               
               
               Cow position:chr22:5384832-5384417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 44

               
               
               Conread position:240-673
               
               
               Cow position:chr22:7165166-7164716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 33

               
               
               Conread position:240-673
               
               
               Cow position:chr22:13286646-13286206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):230, 180

               
               
               Conread position:240-673
               
               
               Cow position:chr22:15567824-15568256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 83

               
               
               Conread position:240-673
               
               
               Cow position:chr22:18020833-18021257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 46

               
               
               Conread position:240-673
               
               
               Cow position:chr22:26150918-26151358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 82

               
               
               Conread position:240-673
               
               
               Cow position:chr22:30269599-30269177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 44

               
               
               Conread position:240-673
               
               
               Cow position:chr22:42685080-42684662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):244, 81

               
               
               Conread position:240-673
               
               
               Cow position:chr22:44741267-44740865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 9

               
               
               Conread position:240-674
               
               
               Cow position:chr22:1289333-1289758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 9

               
               
               Conread position:240-674
               
               
               Cow position:chr22:8732366-8732801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 39

               
               
               Conread position:240-674
               
               
               Cow position:chr22:17852440-17852862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 88

               
               
               Conread position:240-674
               
               
               Cow position:chr22:27322496-27322079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:300
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):119, 34

               
               
               Conread position:240-675
               
               
               Cow position:chr22:644583-645001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 36

               
               
               Conread position:240-675
               
               
               Cow position:chr22:2404078-2403632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 149

               
               
               Conread position:240-675
               
               
               Cow position:chr22:3325785-3325341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 94

               
               
               Conread position:240-675
               
               
               Cow position:chr22:6327576-6328005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 33

               
               
               Conread position:240-675
               
               
               Cow position:chr22:11813525-11813957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:283
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):7, 86

               
               
               Conread position:240-675
               
               
               Cow position:chr22:26339962-26339519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 194

               
               
               Conread position:240-677
               
               
               Cow position:chr22:37202046-37201614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 95

               
               
               Conread position:240-690
               
               
               Cow position:chr22:34616512-34616053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 9

               
               
               Conread position:240-691
               
               
               Cow position:chr22:44717918-44717454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 94

               
               
               Conread position:240-692
               
               
               Cow position:chr22:40349539-40349093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 87

               
               
               Conread position:241-387
               
               
               Cow position:chr22:12207511-12207655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:241-402
               
               
               Cow position:chr22:11790183-11790019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:241-409
               
               
               Cow position:chr22:14432369-14432542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):85, 45

               
               
               Conread position:241-422
               
               
               Cow position:chr22:1991800-1991614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):25, 109

               
               
               Conread position:241-426
               
               
               Cow position:chr22:1728429-1728244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):87, 76

               
               
               Conread position:241-431
               
               
               Cow position:chr22:43130943-43131137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):6, 92

               
               
               Conread position:241-452
               
               
               Cow position:chr22:26268046-26267834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):11, 180

               
               
               Conread position:241-468
               
               
               Cow position:chr22:4156619-4156849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:178
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):59, 44

               
               
               Conread position:241-474
               
               
               Cow position:chr22:42230324-42230561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):79, 103

               
               
               Conread position:241-482
               
               
               Cow position:chr22:23077281-23077540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):87, 9

               
               
               Conread position:241-528
               
               
               Cow position:chr22:27275663-27275372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):6, 189

               
               
               Conread position:241-587
               
               
               Cow position:chr22:24916027-24915685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):171, 28

               
               
               Conread position:241-590
               
               
               Cow position:chr22:15154200-15153838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):6, 136

               
               
               Conread position:241-592
               
               
               Cow position:chr22:8090338-8090685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:253
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):242, 84

               
               
               Conread position:241-625
               
               
               Cow position:chr22:4583757-4583365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 8

               
               
               Conread position:241-663
               
               
               Cow position:chr22:16911603-16912022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:278
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):182, 73

               
               
               Conread position:241-669
               
               
               Cow position:chr22:10162164-10161726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 50

               
               
               Conread position:241-670
               
               
               Cow position:chr22:5595611-5596026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:297
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):87, 164

               
               
               Conread position:241-672
               
               
               Cow position:chr22:8733148-8733560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 94

               
               
               Conread position:241-673
               
               
               Cow position:chr22:28071754-28071316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 8

               
               
               Conread position:241-673
               
               
               Cow position:chr22:33447881-33448313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 186

               
               
               Conread position:241-673
               
               
               Cow position:chr22:34895153-34894734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:298
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):286, 26

               
               
               Conread position:241-673
               
               
               Cow position:chr22:41044712-41045152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:303
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):152, 32

               
               
               Conread position:241-674
               
               
               Cow position:chr22:1309541-1309967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 30

               
               
               Conread position:241-674
               
               
               Cow position:chr22:3250783-3251229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 207

               
               
               Conread position:241-674
               
               
               Cow position:chr22:37029408-37029842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 33

               
               
               Conread position:241-675
               
               
               Cow position:chr22:11370395-11370831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 41

               
               
               Conread position:241-675
               
               
               Cow position:chr22:17949781-17950197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 8

               
               
               Conread position:242-411
               
               
               Cow position:chr22:21041959-21042119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):152, 23

               
               
               Conread position:242-443
               
               
               Cow position:chr22:8327937-8327739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):58, 65

               
               
               Conread position:242-467
               
               
               Cow position:chr22:7496911-7497141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):84, 110

               
               
               Conread position:242-481
               
               
               Cow position:chr22:4054407-4054629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):232, 84

               
               
               Conread position:242-520
               
               
               Cow position:chr22:14214171-14214448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):25, 38

               
               
               Conread position:242-520
               
               
               Cow position:chr22:33522681-33522951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):84, 116

               
               
               Conread position:242-522
               
               
               Cow position:chr22:39602481-39602193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):84, 185

               
               
               Conread position:242-526
               
               
               Cow position:chr22:1659363-1659072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):93, 32

               
               
               Conread position:242-551
               
               
               Cow position:chr22:39215416-39215733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):86, 236

               
               
               Conread position:242-573
               
               
               Cow position:chr22:34736044-34735726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):171, 44

               
               
               Conread position:242-590
               
               
               Cow position:chr22:15618803-15618455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:254
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):88, 180

               
               
               Conread position:242-605
               
               
               Cow position:chr22:4156884-4157251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:252
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):89, 65

               
               
               Conread position:242-613
               
               
               Cow position:chr22:4162387-4162767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:255
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):83, 115

               
               
               Conread position:242-662
               
               
               Cow position:chr22:5016686-5016281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:290
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):173, 77

               
               
               Conread position:242-667
               
               
               Cow position:chr22:27577941-27577501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:296
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):86, 195

               
               
               Conread position:242-670
               
               
               Cow position:chr22:41970962-41971392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 7

               
               
               Conread position:242-671
               
               
               Cow position:chr22:43398195-43397781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 40

               
               
               Conread position:242-673
               
               
               Cow position:chr22:4075689-4076137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 195

               
               
               Conread position:242-673
               
               
               Cow position:chr22:6754067-6754492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 197

               
               
               Conread position:242-673
               
               
               Cow position:chr22:7154071-7153652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:296
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):74, 112

               
               
               Conread position:242-673
               
               
               Cow position:chr22:10303211-10302772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 34

               
               
               Conread position:242-673
               
               
               Cow position:chr22:13957449-13957888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 95

               
               
               Conread position:242-673
               
               
               Cow position:chr22:21905664-21905256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:294
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):48, 81

               
               
               Conread position:242-673
               
               
               Cow position:chr22:28371127-28370708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 84

               
               
               Conread position:242-673
               
               
               Cow position:chr22:30699361-30698941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 90

               
               
               Conread position:242-673
               
               
               Cow position:chr22:33485429-33485841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):285, 32

               
               
               Conread position:242-675
               
               
               Cow position:chr22:8357774-8357374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:295
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:242-675
               
               
               Cow position:chr22:23115112-23115545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 10

               
               
               Conread position:242-675
               
               
               Cow position:chr22:27171073-27171499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 44

               
               
               Conread position:242-675
               
               
               Cow position:chr22:36194027-36193621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:292
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):286, 65

               
               
               Conread position:242-675
               
               
               Cow position:chr22:40374802-40374366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 86

               
               
               Conread position:242-687
               
               
               Cow position:chr22:32661712-32661260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 145

               
               
               Conread position:242-695
               
               
               Cow position:chr22:27274494-27274953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 7

               
               
               Conread position:243-443
               
               
               Cow position:chr22:4628757-4628546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):67, 93

               
               
               Conread position:243-468
               
               
               Cow position:chr22:18966966-18967190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):85, 31

               
               
               Conread position:243-476
               
               
               Cow position:chr22:12902661-12902888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:177
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):225, 90

               
               
               Conread position:243-670
               
               
               Cow position:chr22:14142929-14143341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:296
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):174, 81

               
               
               Conread position:243-672
               
               
               Cow position:chr22:14372362-14371930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):284, 71

               
               
               Conread position:244-417
               
               
               Cow position:chr22:1830237-1830069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):91, 76

               
               
               Conread position:244-670
               
               
               Cow position:chr22:30515462-30515017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 18

               
               
               Conread position:244-671
               
               
               Cow position:chr22:25361671-25361254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):250, 42

               
               
               Conread position:244-672
               
               
               Cow position:chr22:23249543-23249949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:301
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):160, 61

               
               
               Conread position:245-465
               
               
               Cow position:chr22:16845200-16845433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:245-476
               
               
               Cow position:chr22:14141148-14141383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):84, 191

               
               
               Conread position:245-479
               
               
               Cow position:chr22:23675780-23676006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:245-506
               
               
               Cow position:chr22:8287373-8287120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:245-528
               
               
               Cow position:chr22:899031-898751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):173, 78

               
               
               Conread position:245-558
               
               
               Cow position:chr22:19827668-19827992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):50, 253

               
               
               Conread position:245-671
               
               
               Cow position:chr22:16621385-16620937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 206

               
               
               Conread position:245-672
               
               
               Cow position:chr22:20862571-20862986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:303
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):170, 61

               
               
               Conread position:245-673
               
               
               Cow position:chr22:21012578-21012152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 34

               
               
               Conread position:245-675
               
               
               Cow position:chr22:20627026-20626601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 65

               
               
               Conread position:246-441
               
               
               Cow position:chr22:6360001-6360189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):169, 64

               
               
               Conread position:246-468
               
               
               Cow position:chr22:17198330-17198106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):82, 27

               
               
               Conread position:246-544
               
               
               Cow position:chr22:12892169-12892479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:221
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:246-598
               
               
               Cow position:chr22:9668771-9668398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):94, 117

               
               
               Conread position:246-605
               
               
               Cow position:chr22:32480275-32480653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 267

               
               
               Conread position:246-667
               
               
               Cow position:chr22:23806346-23806779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 91

               
               
               Conread position:246-672
               
               
               Cow position:chr22:34726867-34726435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 132

               
               
               Conread position:246-673
               
               
               Cow position:chr22:10936657-10937071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:290
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):91, 27

               
               
               Conread position:246-673
               
               
               Cow position:chr22:31195248-31194835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 60

               
               
               Conread position:246-674
               
               
               Cow position:chr22:13866860-13866406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 193

               
               
               Conread position:246-674
               
               
               Cow position:chr22:14178640-14179071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 63

               
               
               Conread position:246-675
               
               
               Cow position:chr22:40048750-40048323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 174

               
               
               Conread position:247-668
               
               
               Cow position:chr22:10684907-10685321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 41

               
               
               Conread position:249-436
               
               
               Cow position:chr22:30687208-30687027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):166, 35

               
               
               Conread position:249-464
               
               
               Cow position:chr22:4164168-4163951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:166
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):76, 186

               
               
               Conread position:249-469
               
               
               Cow position:chr22:17129192-17128978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):166, 24

               
               
               Conread position:249-521
               
               
               Cow position:chr22:530389-530653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):58, 80

               
               
               Conread position:249-605
               
               
               Cow position:chr22:1651678-1651333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):156, 70

               
               
               Conread position:249-630
               
               
               Cow position:chr22:1849264-1848869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 278

               
               
               Conread position:249-673
               
               
               Cow position:chr22:8447096-8446693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:290
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):164, 66

               
               
               Conread position:249-674
               
               
               Cow position:chr22:30094432-30094007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 84

               
               
               Conread position:250-666
               
               
               Cow position:chr22:14245250-14245656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:284
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):68, 128

               
               
               Conread position:250-671
               
               
               Cow position:chr22:40072150-40071733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 23

               
               
               Conread position:251-412
               
               
               Cow position:chr22:15006925-15007085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:251-417
               
               
               Cow position:chr22:1046001-1046171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:251-464
               
               
               Cow position:chr22:23265462-23265680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):64, 107

               
               
               Conread position:251-528
               
               
               Cow position:chr22:2408942-2409212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):68, 86

               
               
               Conread position:251-671
               
               
               Cow position:chr22:10532680-10532258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 59

               
               
               Conread position:251-684
               
               
               Cow position:chr22:5467178-5467619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):166, 73

               
               
               Conread position:252-482
               
               
               Cow position:chr22:15737416-15737188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):176, 13

               
               
               Conread position:252-610
               
               
               Cow position:chr22:23980021-23980392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):74, 100

               
               
               Conread position:253-426
               
               
               Cow position:chr22:35533044-35533223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):62, 167

               
               
               Conread position:253-521
               
               
               Cow position:chr22:25690093-25690367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):154, 71

               
               
               Conread position:253-576
               
               
               Cow position:chr22:40789742-40789424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 20

               
               
               Conread position:253-614
               
               
               Cow position:chr22:12389287-12388908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 173

               
               
               Conread position:254-449
               
               
               Cow position:chr22:6793696-6793888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):161, 70

               
               
               Conread position:254-466
               
               
               Cow position:chr22:16724504-16724717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):163, 29

               
               
               Conread position:254-538
               
               
               Cow position:chr22:9597401-9597683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:206
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):230, 66

               
               
               Conread position:254-559
               
               
               Cow position:chr22:27066567-27066264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):53, 188

               
               
               Conread position:254-571
               
               
               Cow position:chr22:10609541-10609217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):59, 7

               
               
               Conread position:254-633
               
               
               Cow position:chr22:14378508-14378882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 163

               
               
               Conread position:254-671
               
               
               Cow position:chr22:10631572-10631136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 43

               
               
               Conread position:254-673
               
               
               Cow position:chr22:59797-59368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 100

               
               
               Conread position:255-387
               
               
               Cow position:chr22:18441267-18441132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:257-405
               
               
               Cow position:chr22:33565914-33566061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:257-421
               
               
               Cow position:chr22:10468691-10468527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):159, 76

               
               
               Conread position:257-463
               
               
               Cow position:chr22:40870011-40869806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):50, 80

               
               
               Conread position:257-468
               
               
               Cow position:chr22:30642952-30643166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):51, 16

               
               
               Conread position:257-492
               
               
               Cow position:chr22:2075822-2076066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):62, 183

               
               
               Conread position:257-510
               
               
               Cow position:chr22:13719854-13720098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):223, 67

               
               
               Conread position:257-512
               
               
               Cow position:chr22:1026084-1025810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):58, 28

               
               
               Conread position:257-535
               
               
               Cow position:chr22:1911831-1911569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):161, 28

               
               
               Conread position:257-672
               
               
               Cow position:chr22:28057861-28058280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 189

               
               
               Conread position:257-673
               
               
               Cow position:chr22:28146863-28146446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 267

               
               
               Conread position:257-673
               
               
               Cow position:chr22:30484085-30483674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 52

               
               
               Conread position:257-673
               
               
               Cow position:chr22:31646664-31646256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 29

               
               
               Conread position:258-412
               
               
               Cow position:chr22:16655560-16655712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:258-490
               
               
               Cow position:chr22:5712764-5712535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):159, 15

               
               
               Conread position:258-673
               
               
               Cow position:chr22:40120693-40121116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 113

               
               
               Conread position:259-521
               
               
               Cow position:chr22:12749734-12749985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):160, 14

               
               
               Conread position:259-674
               
               
               Cow position:chr22:45513345-45513760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 142

               
               
               Conread position:260-461
               
               
               Cow position:chr22:2644111-2643905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):65, 164

               
               
               Conread position:260-529
               
               
               Cow position:chr22:18933533-18933815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):68, 176

               
               
               Conread position:261-447
               
               
               Cow position:chr22:8331178-8330987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):65, 182

               
               
               Conread position:261-662
               
               
               Cow position:chr22:28639979-28640380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:279
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):151, 26

               
               
               Conread position:261-677
               
               
               Cow position:chr22:14365775-14366197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 184

               
               
               Conread position:262-473
               
               
               Cow position:chr22:32514472-32514252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):63, 92

               
               
               Conread position:262-670
               
               
               Cow position:chr22:41982543-41982950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 121

               
               
               Conread position:264-639
               
               
               Cow position:chr22:15024935-15025307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 21

               
               
               Conread position:264-673
               
               
               Cow position:chr22:15039006-15039423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 76

               
               
               Conread position:265-494
               
               
               Cow position:chr22:17119987-17119757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):54, 120

               
               
               Conread position:265-659
               
               
               Cow position:chr22:47556026-47555620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 164

               
               
               Conread position:266-540
               
               
               Cow position:chr22:14006342-14006078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):150, 19

               
               
               Conread position:268-673
               
               
               Cow position:chr22:3950422-3950003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 20

               
               
               Conread position:269-603
               
               
               Cow position:chr22:14638311-14638652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:247
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):11, 28

               
               
               Conread position:272-673
               
               
               Cow position:chr22:32188691-32189077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:277
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):147, 15

               
               
               Conread position:276-673
               
               
               Cow position:chr22:4119401-4119806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 58

               
               
               Conread position:278-451
               
               
               Cow position:chr22:8710212-8710388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):10, 57

               
               
               Conread position:286-445
               
               
               Cow position:chr22:22606378-22606216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):31, 16

               
               
               Conread position:286-673
               
               
               Cow position:chr22:3965340-3964947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 292

               
               
               Conread position:292-515
               
               
               Cow position:chr22:9171553-9171325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):122, 41

               
               
               Conread position:292-517
               
               
               Cow position:chr22:25846175-25846403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):32, 43

               
               
               Conread position:292-667
               
               
               Cow position:chr22:1067767-1068148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 231

               
               
               Conread position:294-472
               
               
               Cow position:chr22:23398260-23398440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):18, 40

               
               
               Conread position:295-422
               
               
               Cow position:chr22:31309026-31308899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):123, 38

               
               
               Conread position:298-634
               
               
               Cow position:chr22:27047276-27047599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):253, 18

               
               
               Conread position:298-674
               
               
               Cow position:chr22:32895359-32894964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:274
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):11, 125

               
               
               Conread position:300-634
               
               
               Cow position:chr22:877654-877312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 125

               
               
               Conread position:300-676
               
               
               Cow position:chr22:1591160-1590779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 36

               
               
               Conread position:301-460
               
               
               Cow position:chr22:10585447-10585603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):19, 35

               
               
               Conread position:301-691
               
               
               Cow position:chr22:4017609-4017218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 33

               
               
               Conread position:302-506
               
               
               Cow position:chr22:29185473-29185679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):117, 42

               
               
               Conread position:302-673
               
               
               Cow position:chr22:5337460-5337836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 58

               
               
               Conread position:304-520
               
               
               Cow position:chr22:10553552-10553770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:173
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):115, 29

               
               
               Conread position:304-671
               
               
               Cow position:chr22:28351534-28351892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 69

               
               
               Conread position:304-673
               
               
               Cow position:chr22:28665418-28665031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 32

               
               
               Conread position:305-482
               
               
               Cow position:chr22:14381789-14381612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):112, 15

               
               
               Conread position:306-481
               
               
               Cow position:chr22:21235305-21235477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):112, 26

               
               
               Conread position:306-673
               
               
               Cow position:chr22:24610964-24611314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 20

               
               
               Conread position:308-674
               
               
               Cow position:chr22:2623393-2623754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 25

               
               
               Conread position:310-423
               
               
               Cow position:chr22:3997882-3997767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:92
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:310-469
               
               
               Cow position:chr22:6326571-6326411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):113, 23

               
               
               Conread position:310-477
               
               
               Cow position:chr22:23036292-23036123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:310-541
               
               
               Cow position:chr22:34104545-34104781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):104, 24

               
               
               Conread position:310-584
               
               
               Cow position:chr22:25387456-25387172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:207
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):10, 126

               
               
               Conread position:310-585
               
               
               Cow position:chr22:31510251-31510522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):73, 24

               
               
               Conread position:310-594
               
               
               Cow position:chr22:19173829-19173536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:218
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):71, 23

               
               
               Conread position:310-602
               
               
               Cow position:chr22:26969917-26969611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):80, 121

               
               
               Conread position:310-661
               
               
               Cow position:chr22:43119602-43119955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 23

               
               
               Conread position:310-666
               
               
               Cow position:chr22:38981013-38980673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:245
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):125, 17

               
               
               Conread position:310-667
               
               
               Cow position:chr22:23176313-23176682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 124

               
               
               Conread position:310-670
               
               
               Cow position:chr22:3317247-3316890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 14

               
               
               Conread position:310-671
               
               
               Cow position:chr22:27431578-27431919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 23

               
               
               Conread position:310-673
               
               
               Cow position:chr22:2627708-2627339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:266
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):11, 24

               
               
               Conread position:310-673
               
               
               Cow position:chr22:17814362-17813990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:274
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):11, 98

               
               
               Conread position:310-674
               
               
               Cow position:chr22:2502953-2502598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 124

               
               
               Conread position:310-675
               
               
               Cow position:chr22:21295598-21295965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 23

               
               
               Conread position:310-676
               
               
               Cow position:chr22:16044289-16044670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 23

               
               
               Conread position:311-539
               
               
               Cow position:chr22:1871226-1870997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):17, 120

               
               
               Conread position:311-674
               
               
               Cow position:chr22:27328767-27329123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:257
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):67, 23

               
               
               Conread position:311-675
               
               
               Cow position:chr22:37324663-37324307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 23

               
               
               Conread position:312-512
               
               
               Cow position:chr22:21304116-21304320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):88, 40

               
               
               Conread position:312-671
               
               
               Cow position:chr22:30049441-30049809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 21

               
               
               Conread position:313-481
               
               
               Cow position:chr22:23440172-23440339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):161, 20

               
               
               Conread position:313-526
               
               
               Cow position:chr22:10286094-10285876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):81, 20

               
               
               Conread position:313-526
               
               
               Cow position:chr22:13878301-13878094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):105, 20

               
               
               Conread position:313-528
               
               
               Cow position:chr22:23750773-23750986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):89, 20

               
               
               Conread position:313-576
               
               
               Cow position:chr22:25540123-25539846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 20

               
               
               Conread position:313-629
               
               
               Cow position:chr22:10421157-10420837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:237
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):53, 24

               
               
               Conread position:313-672
               
               
               Cow position:chr22:8840729-8840348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:314-504
               
               
               Cow position:chr22:4137528-4137720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):103, 13

               
               
               Conread position:314-572
               
               
               Cow position:chr22:31154078-31153815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:205
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):36, 20

               
               
               Conread position:314-673
               
               
               Cow position:chr22:34750798-34750439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 67

               
               
               Conread position:314-673
               
               
               Cow position:chr22:35753178-35753544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 23

               
               
               Conread position:314-674
               
               
               Cow position:chr22:12967945-12968309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 125

               
               
               Conread position:314-674
               
               
               Cow position:chr22:13841263-13840898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 123

               
               
               Conread position:314-688
               
               
               Cow position:chr22:13769601-13769226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:258
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):104, 149

               
               
               Conread position:315-673
               
               
               Cow position:chr22:23403520-23403879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):79, 12

               
               
               Conread position:315-673
               
               
               Cow position:chr22:26659163-26658817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 17

               
               
               Conread position:315-674
               
               
               Cow position:chr22:17764498-17764135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 18

               
               
               Conread position:315-675
               
               
               Cow position:chr22:8115964-8116322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:256
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):11, 110

               
               
               Conread position:316-673
               
               
               Cow position:chr22:8481763-8481409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 18

               
               
               Conread position:319-535
               
               
               Cow position:chr22:12527002-12527225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):11, 115

               
               
               Conread position:320-614
               
               
               Cow position:chr22:27741009-27740709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):6, 100

               
               
               Conread position:320-673
               
               
               Cow position:chr22:10919734-10920102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):97, 115

               
               
               Conread position:320-673
               
               
               Cow position:chr22:14924615-14924962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 13

               
               
               Conread position:320-673
               
               
               Cow position:chr22:24509546-24509898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:245
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):73, 16

               
               
               Conread position:321-641
               
               
               Cow position:chr22:46567777-46568095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 46

               
               
               Conread position:322-471
               
               
               Cow position:chr22:11344624-11344475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):93, 22

               
               
               Conread position:322-476
               
               
               Cow position:chr22:10752426-10752582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:322-673
               
               
               Cow position:chr22:34475883-34476239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:265
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):28, 98

               
               
               Conread position:322-675
               
               
               Cow position:chr22:1279270-1279626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:255
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):24, 11

               
               
               Conread position:323-672
               
               
               Cow position:chr22:34712839-34712477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 10

               
               
               Conread position:324-480
               
               
               Cow position:chr22:1838422-1838263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):89, 111

               
               
               Conread position:324-670
               
               
               Cow position:chr22:24734204-24734548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):113, 49

               
               
               Conread position:324-674
               
               
               Cow position:chr22:10315191-10314838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:252
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):14, 105

               
               
               Conread position:325-646
               
               
               Cow position:chr22:24628545-24628869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):93, 112

               
               
               Conread position:326-637
               
               
               Cow position:chr22:43743234-43743532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):92, 10

               
               
               Conread position:327-542
               
               
               Cow position:chr22:12341307-12341088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):90, 69

               
               
               Conread position:327-589
               
               
               Cow position:chr22:7102943-7102674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):97, 92

               
               
               Conread position:327-672
               
               
               Cow position:chr22:19047705-19048042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:252
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):92, 74

               
               
               Conread position:327-673
               
               
               Cow position:chr22:7852075-7851721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:245
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):88, 108

               
               
               Conread position:327-673
               
               
               Cow position:chr22:23855081-23854743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:250
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):91, 37

               
               
               Conread position:327-674
               
               
               Cow position:chr22:42612570-42612218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):92, 112

               
               
               Conread position:327-691
               
               
               Cow position:chr22:19775323-19775682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 37

               
               
               Conread position:328-549
               
               
               Cow position:chr22:13222227-13221998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):78, 109

               
               
               Conread position:328-632
               
               
               Cow position:chr22:23121892-23122223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):90, 201

               
               
               Conread position:328-670
               
               
               Cow position:chr22:26316566-26316238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):208, 91

               
               
               Conread position:328-673
               
               
               Cow position:chr22:15090852-15090502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 92

               
               
               Conread position:328-673
               
               
               Cow position:chr22:44180703-44180355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 196

               
               
               Conread position:328-674
               
               
               Cow position:chr22:26184051-26184400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 103

               
               
               Conread position:329-539
               
               
               Cow position:chr22:6936365-6936161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):150, 45

               
               
               Conread position:330-513
               
               
               Cow position:chr22:10929655-10929839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):10, 100

               
               
               Conread position:330-588
               
               
               Cow position:chr22:45846249-45845989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:196
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):89, 14

               
               
               Conread position:331-581
               
               
               Cow position:chr22:18293658-18293906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):93, 88

               
               
               Conread position:331-637
               
               
               Cow position:chr22:11458922-11458622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 23

               
               
               Conread position:332-506
               
               
               Cow position:chr22:28704290-28704113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):83, 103

               
               
               Conread position:333-576
               
               
               Cow position:chr22:10669369-10669610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):85, 16

               
               
               Conread position:333-609
               
               
               Cow position:chr22:9283494-9283776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):85, 11

               
               
               Conread position:337-658
               
               
               Cow position:chr22:10633015-10632692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 100

               
               
               Conread position:337-670
               
               
               Cow position:chr22:21355040-21355380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 94

               
               
               Conread position:337-673
               
               
               Cow position:chr22:864414-864756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 67

               
               
               Conread position:337-673
               
               
               Cow position:chr22:4645872-4645539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 13

               
               
               Conread position:337-673
               
               
               Cow position:chr22:12946081-12946403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:250
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):68, 56

               
               
               Conread position:339-674
               
               
               Cow position:chr22:846002-845663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 96

               
               
               Conread position:341-552
               
               
               Cow position:chr22:4011281-4011063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):70, 95

               
               
               Conread position:344-517
               
               
               Cow position:chr22:29344971-29344796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):89, 12

               
               
               Conread position:345-526
               
               
               Cow position:chr22:3544230-3544046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):19, 93

               
               
               Conread position:346-671
               
               
               Cow position:chr22:7885082-7884755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):71, 106

               
               
               Conread position:347-605
               
               
               Cow position:chr22:3367277-3367018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):71, 87

               
               
               Conread position:350-673
               
               
               Cow position:chr22:43291814-43292139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 51

               
               
               Conread position:351-592
               
               
               Cow position:chr22:27835620-27835369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):68, 50

               
               
               Conread position:354-673
               
               
               Cow position:chr22:29549144-29549462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):81, 23

               
               
               Conread position:356-533
               
               
               Cow position:chr22:28290200-28290020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):68, 63

               
               
               Conread position:356-672
               
               
               Cow position:chr22:34398374-34398692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:230
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):62, 83

               
               
               Conread position:359-673
               
               
               Cow position:chr22:30964207-30963893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:234
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):57, 76

               
               
               Conread position:363-594
               
               
               Cow position:chr22:3241628-3241859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):157, 52

               
               
               Conread position:363-687
               
               
               Cow position:chr22:31592781-31593114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 52

               
               
               Conread position:364-641
               
               
               Cow position:chr22:5675107-5675378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):54, 25

               
               
               Conread position:367-656
               
               
               Cow position:chr22:15068498-15068204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):62, 136

               
               
               Conread position:367-675
               
               
               Cow position:chr22:15760433-15760116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:224
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):85, 52

               
               
               Conread position:370-673
               
               
               Cow position:chr22:3993678-3993372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):48, 55

               
               
               Conread position:372-673
               
               
               Cow position:chr22:14882050-14882349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:217
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):100, 40

               
               
               Conread position:377-673
               
               
               Cow position:chr22:26097559-26097852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):41, 22

               
               
               Conread position:383-630
               
               
               Cow position:chr22:10677936-10678180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):35, 54

               
               
               Conread position:388-675
               
               
               Cow position:chr22:8284031-8283741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):42, 72

               
               
               Conread position:390-673
               
               
               Cow position:chr22:14376364-14376631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):29, 82

               
               
               Conread position:402-672
               
               
               Cow position:chr22:25629728-25630008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:206
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):22, 17

               
               
               Conread position:404-640
               
               
               Cow position:chr22:30710439-30710187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):14, 127

               
               
               Conread position:404-668
               
               
               Cow position:chr22:10585673-10585934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:208
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):72, 11

               
               
               Conread position:405-673
               
               
               Cow position:chr22:41270968-41271229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):13, 33

               
               
               Conread position:417-578
               
               
               Cow position:chr22:26506706-26506871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):49, 11

               
               
               Conread position:418-634
               
               
               Cow position:chr22:1727891-1727680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):112, 18

               
               
               Conread position:421-673
               
               
               Cow position:chr22:12777577-12777821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):36, 14

               
               
               Conread position:428-680
               
               
               Cow position:chr22:20687310-20687048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):38, 55

               
               
               Conread position:429-643
               
               
               Cow position:chr22:18218881-18219102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):6, 38

               
               
               Conread position:434-672
               
               
               Cow position:chr22:6360484-6360725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):46, 90

               
               
               Conread position:434-673
               
               
               Cow position:chr22:9734857-9734617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):9, 88

               
               
               Conread position:436-607
               
               
               Cow position:chr22:12599087-12598913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):48, 35

               
               
               Conread position:436-640
               
               
               Cow position:chr22:1602190-1601978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):103, 44

               
               
               Conread position:436-673
               
               
               Cow position:chr22:26490467-26490223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):26, 88

               
               
               Conread position:437-674
               
               
               Cow position:chr22:1821872-1822114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):42, 83

               
               
               Conread position:440-673
               
               
               Cow position:chr22:5042310-5042081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):106, 41

               
               
               Conread position:440-675
               
               
               Cow position:chr22:2702227-2701988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):87, 67

               
               
               Conread position:442-659
               
               
               Cow position:chr22:66425-66215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):85, 41

               
               
               Conread position:446-674
               
               
               Cow position:chr22:8063331-8063565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):34, 135

               
               
               Conread position:455-630
               
               
               Cow position:chr22:7252664-7252843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):12, 29

               
               
               Conread position:466-673
               
               
               Cow position:chr22:33949031-33949240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):64, 13

               
               
               Conread position:468-675
               
               
               Cow position:chr22:13242409-13242196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):18, 137

               
               
               Conread position:478-674
               
               
               Cow position:chr22:19848438-19848635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):59, 103

               
               
               Conread position:479-675
               
               
               Cow position:chr22:11837250-11837441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):6, 42

               
               
               Conread position:483-650
               
               
               Cow position:chr22:3945128-3944959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):44, 36

               
               
               Conread position:485-673
               
               
               Cow position:chr22:44386456-44386636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):42, 35

               
               
               Conread position:487-673
               
               
               Cow position:chr22:9251066-9251251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):41, 33

               
               
               Conread position:490-673
               
               
               Cow position:chr22:19376653-19376472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):37, 30

               
               
               Conread position:137-481
               
               
               Cow position:chr23:25990134-25990477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):88, 24

               
               
               Conread position:162-382
               
               
               Cow position:chr23:38738593-38738375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):26, 36

               
               
               Conread position:162-491
               
               
               Cow position:chr23:7956569-7956901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):30, 24

               
               
               Conread position:162-673
               
               
               Cow position:chr23:39753388-39752881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 24

               
               
               Conread position:205-472
               
               
               Cow position:chr23:1936394-1936673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):29, 224

               
               
               Conread position:218-382
               
               
               Cow position:chr23:22651624-22651468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:221-467
               
               
               Cow position:chr23:1760609-1760871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):22, 228

               
               
               Conread position:221-524
               
               
               Cow position:chr23:306748-306435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):107, 217

               
               
               Conread position:224-400
               
               
               Cow position:chr23:4521661-4521841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):23, 8

               
               
               Conread position:226-434
               
               
               Cow position:chr23:37948908-37948693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):12, 81

               
               
               Conread position:227-673
               
               
               Cow position:chr23:26949410-26948957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 83

               
               
               Conread position:228-674
               
               
               Cow position:chr23:24509901-24509468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 83

               
               
               Conread position:229-528
               
               
               Cow position:chr23:385093-385399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:221
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):87, 155

               
               
               Conread position:231-527
               
               
               Cow position:chr23:17486609-17486912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:223
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):30, 92

               
               
               Conread position:231-630
               
               
               Cow position:chr23:5451535-5451131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 200

               
               
               Conread position:232-522
               
               
               Cow position:chr23:3431301-3430987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):11, 225

               
               
               Conread position:232-675
               
               
               Cow position:chr23:5869978-5870418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:296
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):103, 126

               
               
               Conread position:233-449
               
               
               Cow position:chr23:18874188-18874418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):15, 119

               
               
               Conread position:234-373
               
               
               Cow position:chr23:2801220-2801359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):9, 94

               
               
               Conread position:234-417
               
               
               Cow position:chr23:33232491-33232675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):94, 18

               
               
               Conread position:234-422
               
               
               Cow position:chr23:1954485-1954300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):14, 25

               
               
               Conread position:234-425
               
               
               Cow position:chr23:20397257-20397448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):97, 130

               
               
               Conread position:234-439
               
               
               Cow position:chr23:7155490-7155690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):9, 84

               
               
               Conread position:234-442
               
               
               Cow position:chr23:32546058-32546265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):63, 39

               
               
               Conread position:234-474
               
               
               Cow position:chr23:30244735-30244508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:234-477
               
               
               Cow position:chr23:36200611-36200374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):8, 87

               
               
               Conread position:234-521
               
               
               Cow position:chr23:16780344-16780630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):14, 53

               
               
               Conread position:234-539
               
               
               Cow position:chr23:1222031-1222338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:223
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):184, 50

               
               
               Conread position:234-563
               
               
               Cow position:chr23:9226482-9226147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:242
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):68, 12

               
               
               Conread position:234-604
               
               
               Cow position:chr23:1583726-1583363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:261
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):183, 15

               
               
               Conread position:234-608
               
               
               Cow position:chr23:3190918-3191301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 18

               
               
               Conread position:234-634
               
               
               Cow position:chr23:8923808-8923409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:260
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):184, 15

               
               
               Conread position:234-646
               
               
               Cow position:chr23:4646718-4646307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 87

               
               
               Conread position:234-668
               
               
               Cow position:chr23:9734631-9734186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 215

               
               
               Conread position:234-673
               
               
               Cow position:chr23:6244392-6244820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 76

               
               
               Conread position:234-673
               
               
               Cow position:chr23:8063740-8063321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 78

               
               
               Conread position:235-387
               
               
               Cow position:chr23:21539365-21539211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):91, 18

               
               
               Conread position:235-458
               
               
               Cow position:chr23:18739250-18739481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):7, 206

               
               
               Conread position:235-490
               
               
               Cow position:chr23:19565655-19565402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):65, 37

               
               
               Conread position:235-542
               
               
               Cow position:chr23:40348438-40348743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):169, 17

               
               
               Conread position:235-566
               
               
               Cow position:chr23:11081466-11081128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 18

               
               
               Conread position:235-642
               
               
               Cow position:chr23:40444065-40443663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:284
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):183, 98

               
               
               Conread position:235-673
               
               
               Cow position:chr23:2281979-2282407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 41

               
               
               Conread position:235-673
               
               
               Cow position:chr23:8698635-8698210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 206

               
               
               Conread position:235-674
               
               
               Cow position:chr23:29345569-29345994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 14

               
               
               Conread position:236-407
               
               
               Cow position:chr23:28814586-28814412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):77, 16

               
               
               Conread position:236-434
               
               
               Cow position:chr23:16664196-16664393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):194, 16

               
               
               Conread position:236-450
               
               
               Cow position:chr23:5395275-5395484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):182, 74

               
               
               Conread position:236-450
               
               
               Cow position:chr23:40737807-40738027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:236-461
               
               
               Cow position:chr23:9220612-9220388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):93, 11

               
               
               Conread position:236-467
               
               
               Cow position:chr23:56948-57189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):92, 11

               
               
               Conread position:236-579
               
               
               Cow position:chr23:12363409-12363761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 94

               
               
               Conread position:236-630
               
               
               Cow position:chr23:33570339-33569945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 48

               
               
               Conread position:236-672
               
               
               Cow position:chr23:29626634-29626182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 208

               
               
               Conread position:236-673
               
               
               Cow position:chr23:1337100-1337537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 16

               
               
               Conread position:236-673
               
               
               Cow position:chr23:15286944-15287367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 16

               
               
               Conread position:236-674
               
               
               Cow position:chr23:22530228-22530652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 96

               
               
               Conread position:236-675
               
               
               Cow position:chr23:39302902-39302480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 130

               
               
               Conread position:237-386
               
               
               Cow position:chr23:27526791-27526642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):75, 10

               
               
               Conread position:237-417
               
               
               Cow position:chr23:9876792-9876972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:237-422
               
               
               Cow position:chr23:18611557-18611744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):63, 10

               
               
               Conread position:237-511
               
               
               Cow position:chr23:16961492-16961225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):177, 12

               
               
               Conread position:237-587
               
               
               Cow position:chr23:38238-37886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):10, 245

               
               
               Conread position:237-587
               
               
               Cow position:chr23:799459-799818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:254
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):89, 240

               
               
               Conread position:237-673
               
               
               Cow position:chr23:1877688-1878104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:299
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):7, 93

               
               
               Conread position:237-674
               
               
               Cow position:chr23:41348422-41348883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 15

               
               
               Conread position:238-378
               
               
               Cow position:chr23:2563870-2563728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):78, 119

               
               
               Conread position:238-421
               
               
               Cow position:chr23:24809232-24809416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):150, 11

               
               
               Conread position:238-422
               
               
               Cow position:chr23:1798325-1798131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:238-465
               
               
               Cow position:chr23:39202867-39203091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):87, 11

               
               
               Conread position:238-469
               
               
               Cow position:chr23:13137733-13137963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):180, 81

               
               
               Conread position:238-519
               
               
               Cow position:chr23:11225059-11224779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):177, 14

               
               
               Conread position:238-564
               
               
               Cow position:chr23:3890367-3890694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):88, 11

               
               
               Conread position:238-643
               
               
               Cow position:chr23:30585443-30585865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:274
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):105, 215

               
               
               Conread position:238-671
               
               
               Cow position:chr23:9874865-9874440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:288
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):88, 16

               
               
               Conread position:238-671
               
               
               Cow position:chr23:14164171-14164631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 9

               
               
               Conread position:238-672
               
               
               Cow position:chr23:25864488-25864916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 113

               
               
               Conread position:238-673
               
               
               Cow position:chr23:8293715-8293268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 14

               
               
               Conread position:238-673
               
               
               Cow position:chr23:29243138-29242713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 47

               
               
               Conread position:239-393
               
               
               Cow position:chr23:26975262-26975414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:239-407
               
               
               Cow position:chr23:5603542-5603709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:239-412
               
               
               Cow position:chr23:13553498-13553670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):72, 46

               
               
               Conread position:239-412
               
               
               Cow position:chr23:30617271-30617447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:239-417
               
               
               Cow position:chr23:17462797-17462616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):75, 121

               
               
               Conread position:239-425
               
               
               Cow position:chr23:4416080-4416269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):61, 46

               
               
               Conread position:239-451
               
               
               Cow position:chr23:32621493-32621274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:239-453
               
               
               Cow position:chr23:5686431-5686633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):174, 17

               
               
               Conread position:239-467
               
               
               Cow position:chr23:3234572-3234807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):11, 117

               
               
               Conread position:239-475
               
               
               Cow position:chr23:4003854-4003612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):89, 113

               
               
               Conread position:239-497
               
               
               Cow position:chr23:4877577-4877300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):9, 208

               
               
               Conread position:239-503
               
               
               Cow position:chr23:1614452-1614721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):95, 151

               
               
               Conread position:239-505
               
               
               Cow position:chr23:40995368-40995107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:188
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):234, 34

               
               
               Conread position:239-528
               
               
               Cow position:chr23:24927031-24926725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:218
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):81, 46

               
               
               Conread position:239-539
               
               
               Cow position:chr23:3244710-3245014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):87, 138

               
               
               Conread position:239-553
               
               
               Cow position:chr23:307663-307341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):89, 199

               
               
               Conread position:239-554
               
               
               Cow position:chr23:19173151-19173465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):68, 129

               
               
               Conread position:239-557
               
               
               Cow position:chr23:22573701-22574034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:240
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):87, 168

               
               
               Conread position:239-579
               
               
               Cow position:chr23:1656099-1655747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 46

               
               
               Conread position:239-586
               
               
               Cow position:chr23:5436435-5436794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 93

               
               
               Conread position:239-586
               
               
               Cow position:chr23:10829374-10829732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):114, 315

               
               
               Conread position:239-589
               
               
               Cow position:chr23:33152990-33153342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:259
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):49, 38

               
               
               Conread position:239-600
               
               
               Cow position:chr23:39813707-39813341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:260
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):79, 169

               
               
               Conread position:239-605
               
               
               Cow position:chr23:8837485-8837857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:238
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):99, 34

               
               
               Conread position:239-605
               
               
               Cow position:chr23:12334427-12334041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 109

               
               
               Conread position:239-638
               
               
               Cow position:chr23:34356846-34356435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 139

               
               
               Conread position:239-673
               
               
               Cow position:chr23:26794708-26795137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 129

               
               
               Conread position:239-675
               
               
               Cow position:chr23:187384-186936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 286

               
               
               Conread position:240-385
               
               
               Cow position:chr23:2511349-2511204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:240-402
               
               
               Cow position:chr23:41478081-41477920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):10, 94

               
               
               Conread position:240-405
               
               
               Cow position:chr23:18822228-18822397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:240-405
               
               
               Cow position:chr23:40377225-40377386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):86, 28

               
               
               Conread position:240-410
               
               
               Cow position:chr23:9726336-9726508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):86, 13

               
               
               Conread position:240-412
               
               
               Cow position:chr23:1429628-1429794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):7, 85

               
               
               Conread position:240-412
               
               
               Cow position:chr23:15056372-15056540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:240-416
               
               
               Cow position:chr23:21638577-21638404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:240-419
               
               
               Cow position:chr23:4291560-4291379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):88, 12

               
               
               Conread position:240-419
               
               
               Cow position:chr23:10676059-10675875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):7, 93

               
               
               Conread position:240-423
               
               
               Cow position:chr23:38992892-38993070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):175, 33

               
               
               Conread position:240-428
               
               
               Cow position:chr23:4979079-4979268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):32, 95

               
               
               Conread position:240-430
               
               
               Cow position:chr23:9131760-9131950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):178, 52

               
               
               Conread position:240-432
               
               
               Cow position:chr23:1480846-1480651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:240-433
               
               
               Cow position:chr23:17012538-17012729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):176, 73

               
               
               Conread position:240-441
               
               
               Cow position:chr23:2395394-2395594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):184, 179

               
               
               Conread position:240-445
               
               
               Cow position:chr23:25968620-25968421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:240-447
               
               
               Cow position:chr23:21423971-21423762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):10, 86

               
               
               Conread position:240-452
               
               
               Cow position:chr23:22668308-22668515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):178, 77

               
               
               Conread position:240-452
               
               
               Cow position:chr23:28574911-28574699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):86, 12

               
               
               Conread position:240-455
               
               
               Cow position:chr23:1277048-1276840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):8, 34

               
               
               Conread position:240-456
               
               
               Cow position:chr23:17597626-17597412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:170
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):172, 33

               
               
               Conread position:240-457
               
               
               Cow position:chr23:40500893-40501113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):99, 201

               
               
               Conread position:240-460
               
               
               Cow position:chr23:16447491-16447705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):168, 9

               
               
               Conread position:240-460
               
               
               Cow position:chr23:35656613-35656394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):60, 45

               
               
               Conread position:240-463
               
               
               Cow position:chr23:35930152-35929929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):189, 36

               
               
               Conread position:240-463
               
               
               Cow position:chr23:39267989-39267763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):86, 118

               
               
               Conread position:240-482
               
               
               Cow position:chr23:360478-360729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):51, 156

               
               
               Conread position:240-491
               
               
               Cow position:chr23:28529747-28529998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):75, 175

               
               
               Conread position:240-506
               
               
               Cow position:chr23:1981469-1981720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):164, 34

               
               
               Conread position:240-517
               
               
               Cow position:chr23:33629126-33628849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):110, 33

               
               
               Conread position:240-566
               
               
               Cow position:chr23:22414105-22414423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:247
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):71, 46

               
               
               Conread position:240-590
               
               
               Cow position:chr23:39083655-39083299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:247
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):74, 16

               
               
               Conread position:240-630
               
               
               Cow position:chr23:1585194-1585579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:274
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):10, 202

               
               
               Conread position:240-632
               
               
               Cow position:chr23:4726996-4726595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 117

               
               
               Conread position:240-637
               
               
               Cow position:chr23:38974038-38973649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:294
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):188, 9

               
               
               Conread position:240-664
               
               
               Cow position:chr23:5723729-5723319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):244, 13

               
               
               Conread position:240-667
               
               
               Cow position:chr23:5162646-5162205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 107

               
               
               Conread position:240-671
               
               
               Cow position:chr23:20388461-20388870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:294
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):7, 46

               
               
               Conread position:240-672
               
               
               Cow position:chr23:16880966-16881389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 93

               
               
               Conread position:240-672
               
               
               Cow position:chr23:31494073-31493646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 38

               
               
               Conread position:240-673
               
               
               Cow position:chr23:1884969-1885409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 89

               
               
               Conread position:240-673
               
               
               Cow position:chr23:4528664-4529125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 124

               
               
               Conread position:240-673
               
               
               Cow position:chr23:15743294-15742866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 9

               
               
               Conread position:240-673
               
               
               Cow position:chr23:16037323-16037751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:279
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):67, 117

               
               
               Conread position:240-673
               
               
               Cow position:chr23:37066060-37065604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 296

               
               
               Conread position:240-673
               
               
               Cow position:chr23:38454959-38455418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 104

               
               
               Conread position:240-674
               
               
               Cow position:chr23:534430-533995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 94

               
               
               Conread position:240-674
               
               
               Cow position:chr23:18322244-18322654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):297, 44

               
               
               Conread position:240-676
               
               
               Cow position:chr23:10416223-10416660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 71

               
               
               Conread position:240-678
               
               
               Cow position:chr23:13555229-13555666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 147

               
               
               Conread position:241-405
               
               
               Cow position:chr23:25933351-25933196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:241-410
               
               
               Cow position:chr23:1510725-1510893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:241-413
               
               
               Cow position:chr23:17792220-17792394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):7, 112

               
               
               Conread position:241-417
               
               
               Cow position:chr23:18489856-18489683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):11, 86

               
               
               Conread position:241-505
               
               
               Cow position:chr23:40275354-40275609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):232, 36

               
               
               Conread position:241-522
               
               
               Cow position:chr23:24966258-24966546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):86, 196

               
               
               Conread position:241-600
               
               
               Cow position:chr23:1636471-1636114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:266
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):78, 98

               
               
               Conread position:241-609
               
               
               Cow position:chr23:32479813-32480209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 299

               
               
               Conread position:241-629
               
               
               Cow position:chr23:5426640-5426238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 198

               
               
               Conread position:241-653
               
               
               Cow position:chr23:40790168-40789772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 79

               
               
               Conread position:241-657
               
               
               Cow position:chr23:29801638-29801215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:266
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):127, 115

               
               
               Conread position:241-670
               
               
               Cow position:chr23:3967351-3967781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 12

               
               
               Conread position:241-673
               
               
               Cow position:chr23:10853250-10852819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 42

               
               
               Conread position:242-387
               
               
               Cow position:chr23:23034238-23034382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:242-411
               
               
               Cow position:chr23:20725489-20725655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:242-421
               
               
               Cow position:chr23:809709-809527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):75, 115

               
               
               Conread position:242-428
               
               
               Cow position:chr23:24718601-24718789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):171, 91

               
               
               Conread position:242-434
               
               
               Cow position:chr23:23104288-23104481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):168, 91

               
               
               Conread position:242-465
               
               
               Cow position:chr23:7709984-7709767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):171, 68

               
               
               Conread position:242-506
               
               
               Cow position:chr23:18823186-18822926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:197
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):173, 78

               
               
               Conread position:242-513
               
               
               Cow position:chr23:18748874-18749138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):172, 70

               
               
               Conread position:242-519
               
               
               Cow position:chr23:20539581-20539304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):118, 68

               
               
               Conread position:242-519
               
               
               Cow position:chr23:40391677-40391398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):171, 92

               
               
               Conread position:242-552
               
               
               Cow position:chr23:24685442-24685141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:224
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):178, 83

               
               
               Conread position:242-559
               
               
               Cow position:chr23:1438480-1438174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:233
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):35, 79

               
               
               Conread position:242-567
               
               
               Cow position:chr23:5732739-5732419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):175, 31

               
               
               Conread position:242-603
               
               
               Cow position:chr23:16744745-16744380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:264
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):176, 77

               
               
               Conread position:242-652
               
               
               Cow position:chr23:18901864-18902263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 44

               
               
               Conread position:242-667
               
               
               Cow position:chr23:2501655-2502075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 83

               
               
               Conread position:242-670
               
               
               Cow position:chr23:4995894-4996319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:308
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):68, 88

               
               
               Conread position:242-671
               
               
               Cow position:chr23:5617777-5617345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 224

               
               
               Conread position:242-673
               
               
               Cow position:chr23:1883595-1883160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 82

               
               
               Conread position:242-673
               
               
               Cow position:chr23:20744380-20744822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 237

               
               
               Conread position:242-673
               
               
               Cow position:chr23:33601331-33601757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 98

               
               
               Conread position:242-674
               
               
               Cow position:chr23:22297828-22298251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 102

               
               
               Conread position:242-687
               
               
               Cow position:chr23:33711964-33711521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 108

               
               
               Conread position:243-402
               
               
               Cow position:chr23:10844760-10844597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:243-446
               
               
               Cow position:chr23:27849194-27848992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):171, 30

               
               
               Conread position:243-475
               
               
               Cow position:chr23:23904145-23904361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):176, 52

               
               
               Conread position:243-517
               
               
               Cow position:chr23:5881320-5881595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:205
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):171, 77

               
               
               Conread position:243-604
               
               
               Cow position:chr23:7361313-7360950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:265
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):41, 6

               
               
               Conread position:243-663
               
               
               Cow position:chr23:20557641-20558082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 232

               
               
               Conread position:243-668
               
               
               Cow position:chr23:1290507-1290066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 201

               
               
               Conread position:244-572
               
               
               Cow position:chr23:5436801-5437134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):82, 139

               
               
               Conread position:245-447
               
               
               Cow position:chr23:12405622-12405825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):71, 52

               
               
               Conread position:245-469
               
               
               Cow position:chr23:26283919-26283697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):43, 33

               
               
               Conread position:245-474
               
               
               Cow position:chr23:30311731-30311964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):148, 77

               
               
               Conread position:245-479
               
               
               Cow position:chr23:38732430-38732212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):206, 88

               
               
               Conread position:245-522
               
               
               Cow position:chr23:283203-283475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):173, 29

               
               
               Conread position:245-585
               
               
               Cow position:chr23:17484658-17484976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):170, 77

               
               
               Conread position:245-671
               
               
               Cow position:chr23:7845487-7845058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 28

               
               
               Conread position:245-673
               
               
               Cow position:chr23:22804921-22804490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 16

               
               
               Conread position:246-433
               
               
               Cow position:chr23:32126503-32126312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):72, 106

               
               
               Conread position:246-455
               
               
               Cow position:chr23:1194297-1194505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):168, 78

               
               
               Conread position:246-464
               
               
               Cow position:chr23:4844810-4844584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):135, 82

               
               
               Conread position:246-534
               
               
               Cow position:chr23:10497894-10497615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):62, 72

               
               
               Conread position:246-559
               
               
               Cow position:chr23:5795674-5795355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 82

               
               
               Conread position:246-622
               
               
               Cow position:chr23:1759445-1759089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:259
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):87, 189

               
               
               Conread position:246-640
               
               
               Cow position:chr23:25675499-25675893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:271
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):77, 28

               
               
               Conread position:246-673
               
               
               Cow position:chr23:11129434-11129001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 41

               
               
               Conread position:249-409
               
               
               Cow position:chr23:11053703-11053859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):105, 38

               
               
               Conread position:249-436
               
               
               Cow position:chr23:19179174-19179371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):71, 30

               
               
               Conread position:249-442
               
               
               Cow position:chr23:204485-204280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):14, 108

               
               
               Conread position:249-451
               
               
               Cow position:chr23:39330099-39330302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):105, 13

               
               
               Conread position:249-463
               
               
               Cow position:chr23:22238625-22238843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):77, 24

               
               
               Conread position:249-512
               
               
               Cow position:chr23:40637459-40637184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):46, 142

               
               
               Conread position:249-537
               
               
               Cow position:chr23:11212699-11212409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:214
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):169, 75

               
               
               Conread position:249-670
               
               
               Cow position:chr23:41472820-41472379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 35

               
               
               Conread position:249-673
               
               
               Cow position:chr23:343983-344411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 153

               
               
               Conread position:250-478
               
               
               Cow position:chr23:29480069-29479851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):217, 28

               
               
               Conread position:251-426
               
               
               Cow position:chr23:5927429-5927601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):164, 62

               
               
               Conread position:251-725
               
               
               Cow position:chr23:16582714-16583193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 191

               
               
               Conread position:252-493
               
               
               Cow position:chr23:1426791-1427037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):76, 207

               
               
               Conread position:252-509
               
               
               Cow position:chr23:35965341-35965074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):73, 186

               
               
               Conread position:252-521
               
               
               Cow position:chr23:18238332-18238607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):86, 109

               
               
               Conread position:253-472
               
               
               Cow position:chr23:20093053-20093272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):80, 99

               
               
               Conread position:253-484
               
               
               Cow position:chr23:13202180-13202400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):161, 33

               
               
               Conread position:253-568
               
               
               Cow position:chr23:2286015-2285716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:217
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):131, 33

               
               
               Conread position:253-676
               
               
               Cow position:chr23:20194739-20195154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 32

               
               
               Conread position:254-421
               
               
               Cow position:chr23:61772-61929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:254-430
               
               
               Cow position:chr23:36022602-36022774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:254-450
               
               
               Cow position:chr23:24779350-24779551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:254-468
               
               
               Cow position:chr23:22587068-22586854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):89, 53

               
               
               Conread position:254-473
               
               
               Cow position:chr23:24700886-24701111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):19, 157

               
               
               Conread position:254-528
               
               
               Cow position:chr23:14651521-14651791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):72, 19

               
               
               Conread position:255-596
               
               
               Cow position:chr23:4327501-4327850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):10, 218

               
               
               Conread position:257-673
               
               
               Cow position:chr23:4972952-4972550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 16

               
               
               Conread position:258-467
               
               
               Cow position:chr23:5786031-5785819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):13, 45

               
               
               Conread position:258-673
               
               
               Cow position:chr23:26632986-26632566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 20

               
               
               Conread position:258-674
               
               
               Cow position:chr23:21452546-21452967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 61

               
               
               Conread position:259-637
               
               
               Cow position:chr23:1188735-1189099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:255
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):51, 18

               
               
               Conread position:259-674
               
               
               Cow position:chr23:3394315-3394724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 62

               
               
               Conread position:261-671
               
               
               Cow position:chr23:36725731-36726147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:286
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):41, 24

               
               
               Conread position:263-610
               
               
               Cow position:chr23:24944462-24944812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):63, 88

               
               
               Conread position:264-480
               
               
               Cow position:chr23:3279289-3279495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):97, 57

               
               
               Conread position:267-674
               
               
               Cow position:chr23:6768086-6767656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 156

               
               
               Conread position:271-672
               
               
               Cow position:chr23:21446286-21445889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 39

               
               
               Conread position:272-528
               
               
               Cow position:chr23:1701346-1701084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):59, 166

               
               
               Conread position:275-467
               
               
               Cow position:chr23:20563866-20563672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):51, 85

               
               
               Conread position:276-584
               
               
               Cow position:chr23:24984005-24984318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:214
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):154, 15

               
               
               Conread position:276-673
               
               
               Cow position:chr23:20056714-20057100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 95

               
               
               Conread position:278-528
               
               
               Cow position:chr23:18036489-18036744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):61, 248

               
               
               Conread position:281-553
               
               
               Cow position:chr23:39573093-39573373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):135, 55

               
               
               Conread position:286-672
               
               
               Cow position:chr23:2799732-2799334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 30

               
               
               Conread position:290-629
               
               
               Cow position:chr23:21765069-21764728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:250
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):124, 7

               
               
               Conread position:292-613
               
               
               Cow position:chr23:5540297-5539983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:233
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):249, 30

               
               
               Conread position:293-652
               
               
               Cow position:chr23:40648582-40648940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 17

               
               
               Conread position:295-674
               
               
               Cow position:chr23:29458952-29459323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 28

               
               
               Conread position:297-506
               
               
               Cow position:chr23:348801-349016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):24, 37

               
               
               Conread position:301-499
               
               
               Cow position:chr23:35368903-35369104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):25, 56

               
               
               Conread position:302-674
               
               
               Cow position:chr23:9268722-9268355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 111

               
               
               Conread position:303-474
               
               
               Cow position:chr23:32412055-32411879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):44, 17

               
               
               Conread position:303-528
               
               
               Cow position:chr23:8917539-8917761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):172, 31

               
               
               Conread position:303-538
               
               
               Cow position:chr23:1876853-1876613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):30, 133

               
               
               Conread position:303-574
               
               
               Cow position:chr23:28944925-28945201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):21, 124

               
               
               Conread position:304-502
               
               
               Cow position:chr23:35503916-35503723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):16, 114

               
               
               Conread position:307-604
               
               
               Cow position:chr23:7574489-7574800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):61, 26

               
               
               Conread position:308-530
               
               
               Cow position:chr23:21309278-21309503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):111, 25

               
               
               Conread position:308-605
               
               
               Cow position:chr23:1767965-1767661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 25

               
               
               Conread position:310-506
               
               
               Cow position:chr23:10876533-10876330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):84, 116

               
               
               Conread position:310-519
               
               
               Cow position:chr23:21439868-21440080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):95, 105

               
               
               Conread position:310-588
               
               
               Cow position:chr23:21502498-21502789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):103, 23

               
               
               Conread position:310-594
               
               
               Cow position:chr23:4329535-4329839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):22, 131

               
               
               Conread position:310-621
               
               
               Cow position:chr23:41220083-41220405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):109, 163

               
               
               Conread position:310-652
               
               
               Cow position:chr23:18296940-18296595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 126

               
               
               Conread position:310-671
               
               
               Cow position:chr23:30662505-30662859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 94

               
               
               Conread position:310-673
               
               
               Cow position:chr23:1254820-1254444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 23

               
               
               Conread position:310-673
               
               
               Cow position:chr23:13511858-13511500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 23

               
               
               Conread position:310-673
               
               
               Cow position:chr23:18402156-18402519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 115

               
               
               Conread position:310-673
               
               
               Cow position:chr23:33717410-33717777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 29

               
               
               Conread position:311-459
               
               
               Cow position:chr23:37118582-37118727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:311-485
               
               
               Cow position:chr23:3814147-3814325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):18, 128

               
               
               Conread position:311-506
               
               
               Cow position:chr23:22105692-22105495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):103, 22

               
               
               Conread position:311-539
               
               
               Cow position:chr23:39276028-39275791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):51, 25

               
               
               Conread position:313-472
               
               
               Cow position:chr23:1589719-1589558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):79, 20

               
               
               Conread position:313-492
               
               
               Cow position:chr23:3244339-3244518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):102, 20

               
               
               Conread position:313-594
               
               
               Cow position:chr23:13946167-13945871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):106, 20

               
               
               Conread position:313-667
               
               
               Cow position:chr23:1923708-1924063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 20

               
               
               Conread position:313-673
               
               
               Cow position:chr23:5707123-5706767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 21

               
               
               Conread position:313-673
               
               
               Cow position:chr23:7596224-7596564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 21

               
               
               Conread position:313-673
               
               
               Cow position:chr23:11045617-11045251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 88

               
               
               Conread position:313-674
               
               
               Cow position:chr23:38208856-38208476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 67

               
               
               Conread position:314-528
               
               
               Cow position:chr23:20002384-20002168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):96, 100

               
               
               Conread position:314-535
               
               
               Cow position:chr23:39780883-39780661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):105, 19

               
               
               Conread position:314-669
               
               
               Cow position:chr23:6994854-6995203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 19

               
               
               Conread position:314-672
               
               
               Cow position:chr23:14739579-14739216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 177

               
               
               Conread position:314-673
               
               
               Cow position:chr23:29034443-29034080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 19

               
               
               Conread position:314-674
               
               
               Cow position:chr23:10553880-10554246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 19

               
               
               Conread position:316-464
               
               
               Cow position:chr23:4054343-4054195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):99, 21

               
               
               Conread position:316-559
               
               
               Cow position:chr23:36172651-36172399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):77, 64

               
               
               Conread position:316-572
               
               
               Cow position:chr23:30951084-30950824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 124

               
               
               Conread position:316-609
               
               
               Cow position:chr23:4104522-4104232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 17

               
               
               Conread position:316-671
               
               
               Cow position:chr23:20434937-20435282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):99, 17

               
               
               Conread position:319-539
               
               
               Cow position:chr23:1403681-1403903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):95, 116

               
               
               Conread position:319-548
               
               
               Cow position:chr23:6035555-6035330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):160, 48

               
               
               Conread position:319-599
               
               
               Cow position:chr23:19774893-19774611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:210
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):55, 59

               
               
               Conread position:319-605
               
               
               Cow position:chr23:31970413-31970700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):7, 17

               
               
               Conread position:319-675
               
               
               Cow position:chr23:22674297-22674675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:256
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):95, 297

               
               
               Conread position:320-650
               
               
               Cow position:chr23:1742476-1742147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 24

               
               
               Conread position:320-665
               
               
               Cow position:chr23:24867434-24867077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 119

               
               
               Conread position:320-668
               
               
               Cow position:chr23:23409856-23409518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:251
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):6, 15

               
               
               Conread position:320-671
               
               
               Cow position:chr23:16699919-16700270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 13

               
               
               Conread position:321-659
               
               
               Cow position:chr23:1490157-1489837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:233
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):92, 34

               
               
               Conread position:321-671
               
               
               Cow position:chr23:27544951-27544601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 202

               
               
               Conread position:321-674
               
               
               Cow position:chr23:13599462-13599107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 13

               
               
               Conread position:324-674
               
               
               Cow position:chr23:6592589-6592928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 13

               
               
               Conread position:327-514
               
               
               Cow position:chr23:35247484-35247292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):91, 145

               
               
               Conread position:327-577
               
               
               Cow position:chr23:26051155-26050895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):92, 112

               
               
               Conread position:327-637
               
               
               Cow position:chr23:35177437-35177121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):15, 94

               
               
               Conread position:327-673
               
               
               Cow position:chr23:1720866-1721220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:251
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):91, 198

               
               
               Conread position:328-579
               
               
               Cow position:chr23:3408789-3409047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):46, 113

               
               
               Conread position:328-673
               
               
               Cow position:chr23:27563590-27563942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:258
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):86, 35

               
               
               Conread position:331-473
               
               
               Cow position:chr23:30655701-30655841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:336-673
               
               
               Cow position:chr23:10014634-10014312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 13

               
               
               Conread position:337-651
               
               
               Cow position:chr23:22399512-22399190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 65

               
               
               Conread position:337-673
               
               
               Cow position:chr23:11845382-11845055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 23

               
               
               Conread position:337-673
               
               
               Cow position:chr23:25668985-25669303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):55, 22

               
               
               Conread position:337-675
               
               
               Cow position:chr23:353499-353814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:243
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):130, 81

               
               
               Conread position:339-520
               
               
               Cow position:chr23:19769689-19769508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):135, 64

               
               
               Conread position:339-538
               
               
               Cow position:chr23:4795274-4795075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):128, 74

               
               
               Conread position:339-587
               
               
               Cow position:chr23:35938450-35938190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):75, 92

               
               
               Conread position:339-672
               
               
               Cow position:chr23:36309525-36309193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 89

               
               
               Conread position:341-511
               
               
               Cow position:chr23:4470397-4470572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):77, 67

               
               
               Conread position:346-671
               
               
               Cow position:chr23:4562983-4562652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 89

               
               
               Conread position:347-671
               
               
               Cow position:chr23:3262401-3262730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 76

               
               
               Conread position:347-673
               
               
               Cow position:chr23:16237161-16237493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:230
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):136, 9

               
               
               Conread position:347-673
               
               
               Cow position:chr23:25378743-25378423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 67

               
               
               Conread position:349-477
               
               
               Cow position:chr23:9234729-9234856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):116, 33

               
               
               Conread position:349-672
               
               
               Cow position:chr23:32309780-32309449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):70, 81

               
               
               Conread position:349-674
               
               
               Cow position:chr23:39806964-39806638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 67

               
               
               Conread position:353-671
               
               
               Cow position:chr23:15709981-15710309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):55, 124

               
               
               Conread position:354-638
               
               
               Cow position:chr23:19370985-19371269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:215
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):64, 81

               
               
               Conread position:355-506
               
               
               Cow position:chr23:1499400-1499553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):64, 29

               
               
               Conread position:356-657
               
               
               Cow position:chr23:20996546-20996255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:212
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):123, 8

               
               
               Conread position:367-674
               
               
               Cow position:chr23:4810817-4810516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):160, 64

               
               
               Conread position:368-674
               
               
               Cow position:chr23:36128838-36129137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:224
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):186, 42

               
               
               Conread position:368-675
               
               
               Cow position:chr23:7392229-7392518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:213
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):37, 59

               
               
               Conread position:369-594
               
               
               Cow position:chr23:1921152-1921385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):61, 104

               
               
               Conread position:375-673
               
               
               Cow position:chr23:417216-416927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):44, 93

               
               
               Conread position:375-673
               
               
               Cow position:chr23:7402769-7402473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:225
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):44, 8

               
               
               Conread position:389-673
               
               
               Cow position:chr23:2055759-2055469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 49

               
               
               Conread position:390-673
               
               
               Cow position:chr23:9594782-9595061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):28, 16

               
               
               Conread position:391-673
               
               
               Cow position:chr23:670672-670387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 28

               
               
               Conread position:394-565
               
               
               Cow position:chr23:2801633-2801813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):24, 37

               
               
               Conread position:403-594
               
               
               Cow position:chr23:23114073-23113871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):16, 36

               
               
               Conread position:409-666
               
               
               Cow position:chr23:3955450-3955193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):60, 30

               
               
               Conread position:415-614
               
               
               Cow position:chr23:26942470-26942266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):15, 9

               
               
               Conread position:417-540
               
               
               Cow position:chr23:8378907-8379027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):33, 18

               
               
               Conread position:417-670
               
               
               Cow position:chr23:1803810-1803560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:189
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):111, 19

               
               
               Conread position:417-675
               
               
               Cow position:chr23:19978930-19979183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 19

               
               
               Conread position:418-594
               
               
               Cow position:chr23:16664547-16664724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):57, 9

               
               
               Conread position:418-673
               
               
               Cow position:chr23:41285942-41285696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):54, 17

               
               
               Conread position:424-600
               
               
               Cow position:chr23:39028797-39028616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):60, 12

               
               
               Conread position:434-673
               
               
               Cow position:chr23:1321200-1321427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):53, 37

               
               
               Conread position:436-673
               
               
               Cow position:chr23:35254239-35254471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):91, 13

               
               
               Conread position:439-658
               
               
               Cow position:chr23:1068313-1068531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:177
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):47, 30

               
               
               Conread position:446-684
               
               
               Cow position:chr23:11081073-11080837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):33, 77

               
               
               Conread position:483-675
               
               
               Cow position:chr23:36199248-36199058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):47, 36

               
               
               Conread position:487-673
               
               
               Cow position:chr23:222022-221837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):53, 82

               
               
               Conread position:497-675
               
               
               Cow position:chr23:3140807-3140629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):30, 23

               
               
               Conread position:501-673
               
               
               Cow position:chr23:38414023-38414190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):44, 35

               
               
               Conread position:223-670
               
               
               Cow position:chr24:29595603-29596071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 312

               
               
               Conread position:230-673
               
               
               Cow position:chr24:17104383-17104825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 45

               
               
               Conread position:230-675
               
               
               Cow position:chr24:38347864-38347418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:303
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):10, 147

               
               
               Conread position:231-691
               
               
               Cow position:chr24:212156-211703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 89

               
               
               Conread position:232-625
               
               
               Cow position:chr24:10126062-10125650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:293
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):147, 13

               
               
               Conread position:233-362
               
               
               Cow position:chr24:11208752-11208627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:233-392
               
               
               Cow position:chr24:3057110-3056956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:233-566
               
               
               Cow position:chr24:27630582-27630247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):80, 17

               
               
               Conread position:234-368
               
               
               Cow position:chr24:19763345-19763482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:234-397
               
               
               Cow position:chr24:13589-13746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:234-403
               
               
               Cow position:chr24:27412933-27413097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:234-411
               
               
               Cow position:chr24:30325598-30325778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):9, 95

               
               
               Conread position:234-412
               
               
               Cow position:chr24:24091151-24091335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:234-422
               
               
               Cow position:chr24:18874638-18874827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):94, 20

               
               
               Conread position:234-422
               
               
               Cow position:chr24:27940444-27940627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):9, 86

               
               
               Conread position:234-430
               
               
               Cow position:chr24:18302899-18302698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):9, 58

               
               
               Conread position:234-456
               
               
               Cow position:chr24:10219204-10219418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):218, 15

               
               
               Conread position:234-456
               
               
               Cow position:chr24:29984808-29985025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):178, 15

               
               
               Conread position:234-466
               
               
               Cow position:chr24:34896518-34896749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):181, 134

               
               
               Conread position:234-472
               
               
               Cow position:chr24:42984577-42984334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):92, 18

               
               
               Conread position:234-475
               
               
               Cow position:chr24:15289010-15288765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):184, 0

               
               
               Conread position:234-476
               
               
               Cow position:chr24:26001570-26001326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):104, 42

               
               
               Conread position:234-477
               
               
               Cow position:chr24:42175707-42175468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):67, 15

               
               
               Conread position:234-484
               
               
               Cow position:chr24:175324-175561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):9, 53

               
               
               Conread position:234-518
               
               
               Cow position:chr24:41406077-41405793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 63

               
               
               Conread position:234-528
               
               
               Cow position:chr24:37974799-37975094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 88

               
               
               Conread position:234-539
               
               
               Cow position:chr24:390283-389976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):194, 86

               
               
               Conread position:234-610
               
               
               Cow position:chr24:20801163-20801544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:262
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):94, 18

               
               
               Conread position:234-611
               
               
               Cow position:chr24:35985551-35985922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:234-614
               
               
               Cow position:chr24:13626469-13626078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:268
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):81, 204

               
               
               Conread position:234-671
               
               
               Cow position:chr24:41980477-41980922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 200

               
               
               Conread position:234-673
               
               
               Cow position:chr24:32054828-32054413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 41

               
               
               Conread position:234-673
               
               
               Cow position:chr24:33944588-33944148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 19

               
               
               Conread position:234-673
               
               
               Cow position:chr24:35675713-35675284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 13

               
               
               Conread position:234-673
               
               
               Cow position:chr24:43371425-43370989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 15

               
               
               Conread position:234-674
               
               
               Cow position:chr24:25194449-25194007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 159

               
               
               Conread position:234-675
               
               
               Cow position:chr24:23694729-23695158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 15

               
               
               Conread position:234-675
               
               
               Cow position:chr24:37650858-37650409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 133

               
               
               Conread position:235-397
               
               
               Cow position:chr24:38427929-38428093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):91, 17

               
               
               Conread position:235-411
               
               
               Cow position:chr24:24540310-24540485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):44, 90

               
               
               Conread position:235-422
               
               
               Cow position:chr24:6007991-6008176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):93, 17

               
               
               Conread position:235-427
               
               
               Cow position:chr24:16641095-16640899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):93, 193

               
               
               Conread position:235-672
               
               
               Cow position:chr24:28700224-28699799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 17

               
               
               Conread position:235-673
               
               
               Cow position:chr24:25884970-25885417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:235-673
               
               
               Cow position:chr24:39483644-39483214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 14

               
               
               Conread position:236-385
               
               
               Cow position:chr24:41925998-41925854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):7, 45

               
               
               Conread position:236-426
               
               
               Cow position:chr24:18696062-18695867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):64, 13

               
               
               Conread position:236-517
               
               
               Cow position:chr24:43832704-43832420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):14, 50

               
               
               Conread position:236-610
               
               
               Cow position:chr24:24532351-24532001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:251
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):105, 16

               
               
               Conread position:236-621
               
               
               Cow position:chr24:27219908-27220300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:259
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):77, 16

               
               
               Conread position:236-673
               
               
               Cow position:chr24:15057564-15057143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 13

               
               
               Conread position:236-673
               
               
               Cow position:chr24:18734200-18734614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:300
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):303, 16

               
               
               Conread position:236-673
               
               
               Cow position:chr24:20225925-20225478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 37

               
               
               Conread position:236-673
               
               
               Cow position:chr24:27874754-27874345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 49

               
               
               Conread position:236-673
               
               
               Cow position:chr24:30313846-30314295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 85

               
               
               Conread position:236-673
               
               
               Cow position:chr24:34272999-34272543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:308
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):64, 16

               
               
               Conread position:236-674
               
               
               Cow position:chr24:16995059-16994633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):197, 87

               
               
               Conread position:237-422
               
               
               Cow position:chr24:39903829-39904010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):104, 10

               
               
               Conread position:237-600
               
               
               Cow position:chr24:21606497-21606851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:255
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):91, 15

               
               
               Conread position:237-613
               
               
               Cow position:chr24:22647156-22647545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:271
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):30, 21

               
               
               Conread position:237-634
               
               
               Cow position:chr24:16510152-16509752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 29

               
               
               Conread position:237-670
               
               
               Cow position:chr24:27149562-27149141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 38

               
               
               Conread position:238-413
               
               
               Cow position:chr24:25947681-25947858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):61, 14

               
               
               Conread position:238-417
               
               
               Cow position:chr24:22420141-22419960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):88, 27

               
               
               Conread position:238-421
               
               
               Cow position:chr24:250356-250542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):80, 114

               
               
               Conread position:238-422
               
               
               Cow position:chr24:23046716-23046904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:238-426
               
               
               Cow position:chr24:19769049-19768858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):69, 14

               
               
               Conread position:238-435
               
               
               Cow position:chr24:20017247-20017447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):88, 14

               
               
               Conread position:238-473
               
               
               Cow position:chr24:36035873-36036112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):82, 14

               
               
               Conread position:238-478
               
               
               Cow position:chr24:23666946-23667181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:178
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:238-479
               
               
               Cow position:chr24:22156327-22156082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):63, 14

               
               
               Conread position:238-528
               
               
               Cow position:chr24:2359007-2359289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):73, 14

               
               
               Conread position:238-539
               
               
               Cow position:chr24:38006533-38006831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):78, 166

               
               
               Conread position:238-594
               
               
               Cow position:chr24:19801017-19800662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:249
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):230, 14

               
               
               Conread position:238-605
               
               
               Cow position:chr24:44987192-44987578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:238-640
               
               
               Cow position:chr24:10671575-10671159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:283
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):88, 11

               
               
               Conread position:238-643
               
               
               Cow position:chr24:41001444-41001027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:270
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):88, 14

               
               
               Conread position:238-652
               
               
               Cow position:chr24:15693200-15692781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:266
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):63, 14

               
               
               Conread position:238-656
               
               
               Cow position:chr24:37298664-37299078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):177, 14

               
               
               Conread position:238-672
               
               
               Cow position:chr24:28722056-28721630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 47

               
               
               Conread position:238-673
               
               
               Cow position:chr24:9070263-9070694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:279
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):119, 15

               
               
               Conread position:238-673
               
               
               Cow position:chr24:18731931-18732382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 8

               
               
               Conread position:238-673
               
               
               Cow position:chr24:43028148-43028585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 198

               
               
               Conread position:238-674
               
               
               Cow position:chr24:32609827-32609379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:294
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):75, 15

               
               
               Conread position:239-404
               
               
               Cow position:chr24:43349469-43349626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:239-406
               
               
               Cow position:chr24:26588396-26588231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:239-410
               
               
               Cow position:chr24:42146382-42146217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):22, 10

               
               
               Conread position:239-417
               
               
               Cow position:chr24:17689433-17689611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):61, 34

               
               
               Conread position:239-425
               
               
               Cow position:chr24:37252335-37252148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):108, 94

               
               
               Conread position:239-426
               
               
               Cow position:chr24:9300808-9300619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):61, 46

               
               
               Conread position:239-430
               
               
               Cow position:chr24:6887184-6886995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:239-430
               
               
               Cow position:chr24:29677731-29677932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:239-431
               
               
               Cow position:chr24:31383286-31383103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:239-434
               
               
               Cow position:chr24:12121077-12120880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):79, 119

               
               
               Conread position:239-446
               
               
               Cow position:chr24:36286746-36286538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):189, 85

               
               
               Conread position:239-452
               
               
               Cow position:chr24:17308963-17309174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):177, 80

               
               
               Conread position:239-453
               
               
               Cow position:chr24:35310905-35310683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):33, 113

               
               
               Conread position:239-456
               
               
               Cow position:chr24:42688019-42687807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:239-468
               
               
               Cow position:chr24:11028509-11028737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):87, 112

               
               
               Conread position:239-485
               
               
               Cow position:chr24:8677003-8676748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):80, 121

               
               
               Conread position:239-511
               
               
               Cow position:chr24:39910853-39911134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:202
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):87, 118

               
               
               Conread position:239-515
               
               
               Cow position:chr24:880799-880528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):90, 47

               
               
               Conread position:239-518
               
               
               Cow position:chr24:230458-230172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:211
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):101, 47

               
               
               Conread position:239-526
               
               
               Cow position:chr24:36711373-36711090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:239-528
               
               
               Cow position:chr24:37395029-37395322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):61, 46

               
               
               Conread position:239-535
               
               
               Cow position:chr24:18615194-18614878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:228
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):56, 111

               
               
               Conread position:239-539
               
               
               Cow position:chr24:23863448-23863759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):68, 122

               
               
               Conread position:239-551
               
               
               Cow position:chr24:14550968-14550657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):190, 45

               
               
               Conread position:239-590
               
               
               Cow position:chr24:29587178-29586813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:264
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):92, 53

               
               
               Conread position:239-610
               
               
               Cow position:chr24:352426-352805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 109

               
               
               Conread position:239-610
               
               
               Cow position:chr24:25756120-25756486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):94, 182

               
               
               Conread position:239-617
               
               
               Cow position:chr24:39143790-39143401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:250
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):101, 126

               
               
               Conread position:239-650
               
               
               Cow position:chr24:18344244-18343812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:284
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):96, 113

               
               
               Conread position:239-663
               
               
               Cow position:chr24:18474551-18474997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 195

               
               
               Conread position:239-670
               
               
               Cow position:chr24:2392365-2391935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:281
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):126, 46

               
               
               Conread position:239-671
               
               
               Cow position:chr24:27810327-27809925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:287
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):101, 36

               
               
               Conread position:239-671
               
               
               Cow position:chr24:27844355-27844777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 47

               
               
               Conread position:239-673
               
               
               Cow position:chr24:18484813-18485259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 115

               
               
               Conread position:239-673
               
               
               Cow position:chr24:25112376-25111943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:292
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):9, 86

               
               
               Conread position:239-673
               
               
               Cow position:chr24:27906616-27906175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 46

               
               
               Conread position:239-673
               
               
               Cow position:chr24:28063128-28062686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 93

               
               
               Conread position:239-673
               
               
               Cow position:chr24:30483766-30484203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 46

               
               
               Conread position:239-673
               
               
               Cow position:chr24:33098294-33098747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 185

               
               
               Conread position:239-673
               
               
               Cow position:chr24:36403978-36404406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 52

               
               
               Conread position:239-675
               
               
               Cow position:chr24:38815152-38814710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 123

               
               
               Conread position:239-677
               
               
               Cow position:chr24:6450687-6450251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:310
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):68, 149

               
               
               Conread position:240-400
               
               
               Cow position:chr24:27719353-27719510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:240-411
               
               
               Cow position:chr24:28255887-28256053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:240-441
               
               
               Cow position:chr24:3412857-3412657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):178, 9

               
               
               Conread position:240-451
               
               
               Cow position:chr24:32890869-32891080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):18, 27

               
               
               Conread position:240-473
               
               
               Cow position:chr24:2380132-2379894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):93, 195

               
               
               Conread position:240-478
               
               
               Cow position:chr24:21834787-21835020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):178, 9

               
               
               Conread position:240-502
               
               
               Cow position:chr24:27285001-27284732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):81, 164

               
               
               Conread position:240-506
               
               
               Cow position:chr24:20364239-20364502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):178, 57

               
               
               Conread position:240-512
               
               
               Cow position:chr24:28600261-28600537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:211
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):115, 33

               
               
               Conread position:240-535
               
               
               Cow position:chr24:27713233-27713525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 70

               
               
               Conread position:240-540
               
               
               Cow position:chr24:26880934-26880640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):13, 125

               
               
               Conread position:240-556
               
               
               Cow position:chr24:34390448-34390152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):214, 45

               
               
               Conread position:240-565
               
               
               Cow position:chr24:18313740-18314104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:259
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):59, 235

               
               
               Conread position:240-572
               
               
               Cow position:chr24:29605856-29606200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 32

               
               
               Conread position:240-592
               
               
               Cow position:chr24:16895248-16895618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:255
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):57, 211

               
               
               Conread position:240-592
               
               
               Cow position:chr24:19187109-19186780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:251
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):313, 69

               
               
               Conread position:240-600
               
               
               Cow position:chr24:42876724-42877060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):177, 13

               
               
               Conread position:240-606
               
               
               Cow position:chr24:24457065-24457442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 34

               
               
               Conread position:240-630
               
               
               Cow position:chr24:29539751-29540127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 164

               
               
               Conread position:240-661
               
               
               Cow position:chr24:10499395-10498963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 160

               
               
               Conread position:240-667
               
               
               Cow position:chr24:11119471-11119029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 208

               
               
               Conread position:240-668
               
               
               Cow position:chr24:24755606-24755195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 34

               
               
               Conread position:240-669
               
               
               Cow position:chr24:2675513-2675072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:307
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):74, 216

               
               
               Conread position:240-671
               
               
               Cow position:chr24:2402200-2402634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 46

               
               
               Conread position:240-672
               
               
               Cow position:chr24:7917203-7917627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 12

               
               
               Conread position:240-672
               
               
               Cow position:chr24:28496406-28496847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 18

               
               
               Conread position:240-672
               
               
               Cow position:chr24:34742926-34742491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 29

               
               
               Conread position:240-673
               
               
               Cow position:chr24:1269954-1269545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:240-673
               
               
               Cow position:chr24:3494058-3493634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 68

               
               
               Conread position:240-673
               
               
               Cow position:chr24:27267803-27267376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 150

               
               
               Conread position:240-673
               
               
               Cow position:chr24:40301337-40300896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 122

               
               
               Conread position:240-673
               
               
               Cow position:chr24:42103538-42103115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 95

               
               
               Conread position:240-675
               
               
               Cow position:chr24:3165996-3165560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 26

               
               
               Conread position:240-675
               
               
               Cow position:chr24:7079941-7079527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:293
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):37, 52

               
               
               Conread position:240-675
               
               
               Cow position:chr24:42825338-42825760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):289, 44

               
               
               Conread position:241-387
               
               
               Cow position:chr24:6488379-6488238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:241-408
               
               
               Cow position:chr24:22129469-22129629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:241-411
               
               
               Cow position:chr24:7275874-7275709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:241-422
               
               
               Cow position:chr24:18405102-18405285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):9, 175

               
               
               Conread position:241-422
               
               
               Cow position:chr24:25970908-25971080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):174, 44

               
               
               Conread position:241-423
               
               
               Cow position:chr24:32978999-32979175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):174, 33

               
               
               Conread position:241-448
               
               
               Cow position:chr24:7757945-7757739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):177, 78

               
               
               Conread position:241-494
               
               
               Cow position:chr24:14551635-14551388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):117, 20

               
               
               Conread position:241-501
               
               
               Cow position:chr24:2992703-2992965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:200
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):6, 116

               
               
               Conread position:241-501
               
               
               Cow position:chr24:19624041-19623771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):78, 236

               
               
               Conread position:241-506
               
               
               Cow position:chr24:13948298-13948029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):77, 41

               
               
               Conread position:241-510
               
               
               Cow position:chr24:37823700-37823432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):177, 87

               
               
               Conread position:241-538
               
               
               Cow position:chr24:32739088-32739393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):79, 8

               
               
               Conread position:241-591
               
               
               Cow position:chr24:19000219-18999866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):68, 109

               
               
               Conread position:241-637
               
               
               Cow position:chr24:21519606-21519216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 177

               
               
               Conread position:241-673
               
               
               Cow position:chr24:30229650-30229209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 78

               
               
               Conread position:241-674
               
               
               Cow position:chr24:11840360-11839918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 40

               
               
               Conread position:242-401
               
               
               Cow position:chr24:28788033-28787869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:242-423
               
               
               Cow position:chr24:2261845-2261662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):85, 180

               
               
               Conread position:242-441
               
               
               Cow position:chr24:27553275-27553068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):70, 43

               
               
               Conread position:242-446
               
               
               Cow position:chr24:41565926-41566126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):87, 7

               
               
               Conread position:242-467
               
               
               Cow position:chr24:18750886-18750652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):5, 113

               
               
               Conread position:242-477
               
               
               Cow position:chr24:28510966-28510734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):172, 77

               
               
               Conread position:242-539
               
               
               Cow position:chr24:39523275-39523572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 91

               
               
               Conread position:242-587
               
               
               Cow position:chr24:18356881-18357230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 20

               
               
               Conread position:242-611
               
               
               Cow position:chr24:10300254-10299882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):70, 37

               
               
               Conread position:242-617
               
               
               Cow position:chr24:6131714-6132080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:273
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):163, 7

               
               
               Conread position:242-648
               
               
               Cow position:chr24:30236047-30235635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 176

               
               
               Conread position:242-667
               
               
               Cow position:chr24:17311054-17311462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 32

               
               
               Conread position:242-672
               
               
               Cow position:chr24:28349739-28349327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:281
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):173, 43

               
               
               Conread position:242-673
               
               
               Cow position:chr24:24490851-24491270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 13

               
               
               Conread position:242-673
               
               
               Cow position:chr24:27725833-27726263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 31

               
               
               Conread position:242-674
               
               
               Cow position:chr24:28303187-28303609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 85

               
               
               Conread position:242-674
               
               
               Cow position:chr24:31812360-31811924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 70

               
               
               Conread position:242-686
               
               
               Cow position:chr24:5142113-5141668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 31

               
               
               Conread position:243-673
               
               
               Cow position:chr24:11887327-11886898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):236, 34

               
               
               Conread position:243-673
               
               
               Cow position:chr24:39849718-39850135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 91

               
               
               Conread position:245-441
               
               
               Cow position:chr24:39218380-39218579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):52, 33

               
               
               Conread position:245-461
               
               
               Cow position:chr24:42726630-42726404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):55, 31

               
               
               Conread position:245-469
               
               
               Cow position:chr24:25122509-25122290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):212, 89

               
               
               Conread position:245-476
               
               
               Cow position:chr24:23000173-22999955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:245-586
               
               
               Cow position:chr24:37038063-37037723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:248
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):143, 65

               
               
               Conread position:245-596
               
               
               Cow position:chr24:17832657-17833000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:250
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):75, 29

               
               
               Conread position:245-672
               
               
               Cow position:chr24:35074254-35073834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 92

               
               
               Conread position:245-673
               
               
               Cow position:chr24:18374936-18374515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 85

               
               
               Conread position:246-385
               
               
               Cow position:chr24:2223050-2223180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:246-433
               
               
               Cow position:chr24:4634994-4635183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):61, 181

               
               
               Conread position:246-445
               
               
               Cow position:chr24:13610472-13610281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):104, 40

               
               
               Conread position:246-458
               
               
               Cow position:chr24:2730456-2730655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:246-675
               
               
               Cow position:chr24:19465738-19466194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 113

               
               
               Conread position:249-417
               
               
               Cow position:chr24:27203621-27203460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:249-484
               
               
               Cow position:chr24:5360879-5360650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:249-561
               
               
               Cow position:chr24:28234209-28233898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):281, 40

               
               
               Conread position:249-645
               
               
               Cow position:chr24:22079631-22079226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 36

               
               
               Conread position:249-673
               
               
               Cow position:chr24:17860094-17860510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 73

               
               
               Conread position:250-557
               
               
               Cow position:chr24:17751941-17752260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):74, 102

               
               
               Conread position:250-668
               
               
               Cow position:chr24:19535085-19535502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 36

               
               
               Conread position:251-427
               
               
               Cow position:chr24:44776008-44776187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):73, 86

               
               
               Conread position:251-538
               
               
               Cow position:chr24:36008652-36008362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):88, 35

               
               
               Conread position:251-542
               
               
               Cow position:chr24:20807690-20807405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):28, 57

               
               
               Conread position:251-673
               
               
               Cow position:chr24:36173613-36174042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:285
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):75, 103

               
               
               Conread position:252-427
               
               
               Cow position:chr24:44896206-44896028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):58, 89

               
               
               Conread position:252-643
               
               
               Cow position:chr24:4725124-4724736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:271
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):167, 43

               
               
               Conread position:252-672
               
               
               Cow position:chr24:40130301-40129865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 22

               
               
               Conread position:252-679
               
               
               Cow position:chr24:27040215-27039773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 169

               
               
               Conread position:253-671
               
               
               Cow position:chr24:15246494-15246892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 21

               
               
               Conread position:253-673
               
               
               Cow position:chr24:9222216-9222635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:275
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):72, 102

               
               
               Conread position:253-673
               
               
               Cow position:chr24:40592877-40592461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:283
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):139, 70

               
               
               Conread position:254-412
               
               
               Cow position:chr24:22221543-22221382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):66, 100

               
               
               Conread position:254-422
               
               
               Cow position:chr24:22887851-22888024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):59, 88

               
               
               Conread position:254-433
               
               
               Cow position:chr24:21102562-21102391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):161, 71

               
               
               Conread position:254-464
               
               
               Cow position:chr24:19637749-19637534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):110, 67

               
               
               Conread position:254-492
               
               
               Cow position:chr24:18810997-18810765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):74, 174

               
               
               Conread position:254-522
               
               
               Cow position:chr24:38841270-38841517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):215, 50

               
               
               Conread position:254-672
               
               
               Cow position:chr24:23556174-23556589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 65

               
               
               Conread position:254-673
               
               
               Cow position:chr24:18741402-18741830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 188

               
               
               Conread position:257-422
               
               
               Cow position:chr24:162166-161997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:257-448
               
               
               Cow position:chr24:32230344-32230541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):70, 45

               
               
               Conread position:257-480
               
               
               Cow position:chr24:41916417-41916188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):160, 79

               
               
               Conread position:257-539
               
               
               Cow position:chr24:35632141-35631862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):69, 54

               
               
               Conread position:257-672
               
               
               Cow position:chr24:31816735-31816327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 19

               
               
               Conread position:257-673
               
               
               Cow position:chr24:32204624-32205053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 179

               
               
               Conread position:258-579
               
               
               Cow position:chr24:35576377-35576704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:236
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):68, 20

               
               
               Conread position:258-586
               
               
               Cow position:chr24:25092683-25092354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):75, 105

               
               
               Conread position:258-671
               
               
               Cow position:chr24:12851869-12851473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:288
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):11, 39

               
               
               Conread position:258-673
               
               
               Cow position:chr24:20874839-20874417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 76

               
               
               Conread position:258-673
               
               
               Cow position:chr24:44040852-44041268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 61

               
               
               Conread position:259-517
               
               
               Cow position:chr24:28342520-28342247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:262-663
               
               
               Cow position:chr24:20943315-20942920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 75

               
               
               Conread position:268-621
               
               
               Cow position:chr24:28990711-28990358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 17

               
               
               Conread position:269-625
               
               
               Cow position:chr24:16645170-16645533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:261
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):55, 152

               
               
               Conread position:276-478
               
               
               Cow position:chr24:27202226-27202022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):142, 48

               
               
               Conread position:278-517
               
               
               Cow position:chr24:30308417-30308660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):24, 87

               
               
               Conread position:281-638
               
               
               Cow position:chr24:31359454-31359098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 39

               
               
               Conread position:281-673
               
               
               Cow position:chr24:29063524-29063905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 53

               
               
               Conread position:298-670
               
               
               Cow position:chr24:27052377-27052750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:271
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):28, 6

               
               
               Conread position:299-530
               
               
               Cow position:chr24:14457607-14457837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):162, 127

               
               
               Conread position:301-605
               
               
               Cow position:chr24:14171581-14171889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:227
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):122, 20

               
               
               Conread position:301-629
               
               
               Cow position:chr24:34008456-34008797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 119

               
               
               Conread position:303-667
               
               
               Cow position:chr24:44054055-44054395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:252
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):182, 14

               
               
               Conread position:303-673
               
               
               Cow position:chr24:29673634-29673260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 7

               
               
               Conread position:306-467
               
               
               Cow position:chr24:42981652-42981811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:308-468
               
               
               Cow position:chr24:17375745-17375585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):104, 19

               
               
               Conread position:308-469
               
               
               Cow position:chr24:40983239-40983077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):106, 122

               
               
               Conread position:308-473
               
               
               Cow position:chr24:20969557-20969721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):104, 24

               
               
               Conread position:308-473
               
               
               Cow position:chr24:28470572-28470738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):108, 25

               
               
               Conread position:308-628
               
               
               Cow position:chr24:18970397-18970722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 180

               
               
               Conread position:308-664
               
               
               Cow position:chr24:27824569-27824214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 13

               
               
               Conread position:310-541
               
               
               Cow position:chr24:39791648-39791412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):16, 28

               
               
               Conread position:310-596
               
               
               Cow position:chr24:15347696-15347409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):52, 34

               
               
               Conread position:310-671
               
               
               Cow position:chr24:31159721-31159372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 23

               
               
               Conread position:310-673
               
               
               Cow position:chr24:19769601-19769239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 23

               
               
               Conread position:310-673
               
               
               Cow position:chr24:25425136-25424804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):242, 24

               
               
               Conread position:310-673
               
               
               Cow position:chr24:33153883-33153523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 123

               
               
               Conread position:310-674
               
               
               Cow position:chr24:18390195-18390549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 23

               
               
               Conread position:310-674
               
               
               Cow position:chr24:27290979-27290615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 130

               
               
               Conread position:310-675
               
               
               Cow position:chr24:14648253-14648596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:252
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):119, 47

               
               
               Conread position:310-676
               
               
               Cow position:chr24:29679205-29679573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 105

               
               
               Conread position:310-684
               
               
               Cow position:chr24:16556534-16556905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 67

               
               
               Conread position:311-468
               
               
               Cow position:chr24:40404707-40404861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):107, 22

               
               
               Conread position:311-513
               
               
               Cow position:chr24:28043080-28042873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):102, 10

               
               
               Conread position:311-643
               
               
               Cow position:chr24:28326973-28327312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:246
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):15, 129

               
               
               Conread position:311-666
               
               
               Cow position:chr24:35150625-35150277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:255
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):18, 105

               
               
               Conread position:311-673
               
               
               Cow position:chr24:5754940-5754582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 23

               
               
               Conread position:313-629
               
               
               Cow position:chr24:15373508-15373194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 20

               
               
               Conread position:313-662
               
               
               Cow position:chr24:2095778-2096137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:257
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):13, 22

               
               
               Conread position:313-671
               
               
               Cow position:chr24:31324389-31324024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 55

               
               
               Conread position:313-697
               
               
               Cow position:chr24:33465519-33465887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 20

               
               
               Conread position:314-594
               
               
               Cow position:chr24:32071063-32070782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 19

               
               
               Conread position:314-605
               
               
               Cow position:chr24:17434712-17434416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):110, 8

               
               
               Conread position:314-652
               
               
               Cow position:chr24:33221828-33222178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 134

               
               
               Conread position:314-669
               
               
               Cow position:chr24:27748743-27748394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 116

               
               
               Conread position:314-671
               
               
               Cow position:chr24:40850255-40849904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:268
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):12, 63

               
               
               Conread position:315-675
               
               
               Cow position:chr24:17955344-17955709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 18

               
               
               Conread position:316-670
               
               
               Cow position:chr24:43927233-43927577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:317-482
               
               
               Cow position:chr24:11007556-11007393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:320-670
               
               
               Cow position:chr24:39905351-39905718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:262
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):60, 14

               
               
               Conread position:321-671
               
               
               Cow position:chr24:24250819-24250475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 92

               
               
               Conread position:321-673
               
               
               Cow position:chr24:43200181-43200533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 12

               
               
               Conread position:322-516
               
               
               Cow position:chr24:34496218-34496016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):13, 115

               
               
               Conread position:322-671
               
               
               Cow position:chr24:16268035-16268361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:245
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):93, 11

               
               
               Conread position:323-582
               
               
               Cow position:chr24:23186823-23187089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):16, 110

               
               
               Conread position:324-539
               
               
               Cow position:chr24:24662039-24662254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):91, 13

               
               
               Conread position:324-696
               
               
               Cow position:chr24:29389327-29388964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:268
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):51, 98

               
               
               Conread position:327-671
               
               
               Cow position:chr24:28319119-28319457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 108

               
               
               Conread position:327-673
               
               
               Cow position:chr24:29171051-29170706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:252
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):92, 63

               
               
               Conread position:328-506
               
               
               Cow position:chr24:16259150-16259331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):34, 21

               
               
               Conread position:328-558
               
               
               Cow position:chr24:16895050-16895272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):141, 16

               
               
               Conread position:328-582
               
               
               Cow position:chr24:24061715-24061974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):46, 68

               
               
               Conread position:330-673
               
               
               Cow position:chr24:43364445-43364104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 64

               
               
               Conread position:334-605
               
               
               Cow position:chr24:30897455-30897733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:205
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):80, 15

               
               
               Conread position:337-466
               
               
               Cow position:chr24:34556114-34555985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):79, 24

               
               
               Conread position:337-509
               
               
               Cow position:chr24:7046670-7046843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):70, 97

               
               
               Conread position:337-565
               
               
               Cow position:chr24:43967424-43967656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):77, 38

               
               
               Conread position:337-671
               
               
               Cow position:chr24:41755942-41755606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:238
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):73, 100

               
               
               Conread position:337-672
               
               
               Cow position:chr24:3430813-3430477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 101

               
               
               Conread position:337-673
               
               
               Cow position:chr24:201557-201892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 101

               
               
               Conread position:337-673
               
               
               Cow position:chr24:8886990-8886657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 147

               
               
               Conread position:337-673
               
               
               Cow position:chr24:33723765-33724110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 83

               
               
               Conread position:337-673
               
               
               Cow position:chr24:39227074-39226739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:237
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):68, 78

               
               
               Conread position:338-472
               
               
               Cow position:chr24:29538427-29538570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:338-586
               
               
               Cow position:chr24:6912285-6912527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):80, 101

               
               
               Conread position:340-584
               
               
               Cow position:chr24:19736257-19736502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:192
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):78, 95

               
               
               Conread position:340-674
               
               
               Cow position:chr24:23616773-23616434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):26, 9

               
               
               Conread position:346-674
               
               
               Cow position:chr24:43635497-43635174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:234
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):109, 56

               
               
               Conread position:349-675
               
               
               Cow position:chr24:30544798-30545117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 66

               
               
               Conread position:351-673
               
               
               Cow position:chr24:45005013-45004695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:240
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):63, 80

               
               
               Conread position:354-517
               
               
               Cow position:chr24:21895112-21894945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):65, 36

               
               
               Conread position:354-628
               
               
               Cow position:chr24:34578914-34579180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):76, 97

               
               
               Conread position:354-672
               
               
               Cow position:chr24:35569240-35568929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):101, 30

               
               
               Conread position:354-674
               
               
               Cow position:chr24:43432853-43432541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:240
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):70, 65

               
               
               Conread position:355-674
               
               
               Cow position:chr24:15508482-15508795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 60

               
               
               Conread position:359-675
               
               
               Cow position:chr24:42344939-42345270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:235
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):69, 168

               
               
               Conread position:363-539
               
               
               Cow position:chr24:40837826-40837652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):104, 55

               
               
               Conread position:367-646
               
               
               Cow position:chr24:20249846-20250136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):63, 95

               
               
               Conread position:368-600
               
               
               Cow position:chr24:15707396-15707633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):52, 35

               
               
               Conread position:368-675
               
               
               Cow position:chr24:27340970-27341285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:223
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):27, 157

               
               
               Conread position:375-675
               
               
               Cow position:chr24:32693761-32693441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):42, 50

               
               
               Conread position:380-675
               
               
               Cow position:chr24:20024650-20024346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:221
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):50, 87

               
               
               Conread position:384-640
               
               
               Cow position:chr24:10012785-10012546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):46, 89

               
               
               Conread position:384-664
               
               
               Cow position:chr24:6487949-6487670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 51

               
               
               Conread position:394-672
               
               
               Cow position:chr24:42007759-42007487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):91, 17

               
               
               Conread position:399-630
               
               
               Cow position:chr24:39833497-39833732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):19, 40

               
               
               Conread position:399-675
               
               
               Cow position:chr24:37246205-37246479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:202
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):31, 26

               
               
               Conread position:400-610
               
               
               Cow position:chr24:19634086-19633873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):83, 12

               
               
               Conread position:403-641
               
               
               Cow position:chr24:10841197-10841443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):75, 12

               
               
               Conread position:407-686
               
               
               Cow position:chr24:35794729-35795013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 8

               
               
               Conread position:415-619
               
               
               Cow position:chr24:34782785-34782992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):9, 14

               
               
               Conread position:417-669
               
               
               Cow position:chr24:17363651-17363904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 19

               
               
               Conread position:417-672
               
               
               Cow position:chr24:30178238-30177978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):54, 18

               
               
               Conread position:418-674
               
               
               Cow position:chr24:36554837-36555089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):66, 18

               
               
               Conread position:419-609
               
               
               Cow position:chr24:27202595-27202397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):64, 46

               
               
               Conread position:425-605
               
               
               Cow position:chr24:885699-885878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):102, 11

               
               
               Conread position:425-675
               
               
               Cow position:chr24:24136872-24137112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):83, 10

               
               
               Conread position:428-674
               
               
               Cow position:chr24:21860235-21860481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):50, 91

               
               
               Conread position:434-600
               
               
               Cow position:chr24:40984144-40983973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:434-671
               
               
               Cow position:chr24:29028022-29027789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):93, 43

               
               
               Conread position:435-667
               
               
               Cow position:chr24:27207215-27207448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:183
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):50, 35

               
               
               Conread position:436-600
               
               
               Cow position:chr24:30226919-30226750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):103, 47

               
               
               Conread position:436-619
               
               
               Cow position:chr24:29707815-29708009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):23, 88

               
               
               Conread position:439-644
               
               
               Cow position:chr24:18695595-18695391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):90, 80

               
               
               Conread position:439-673
               
               
               Cow position:chr24:27968060-27967821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):37, 88

               
               
               Conread position:440-638
               
               
               Cow position:chr24:3664134-3663940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):109, 31

               
               
               Conread position:441-673
               
               
               Cow position:chr24:3631477-3631258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):89, 38

               
               
               Conread position:441-674
               
               
               Cow position:chr24:27719785-27720013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):86, 39

               
               
               Conread position:441-675
               
               
               Cow position:chr24:40908994-40908755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):18, 38

               
               
               Conread position:450-673
               
               
               Cow position:chr24:40055765-40055981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):104, 58

               
               
               Conread position:468-675
               
               
               Cow position:chr24:591861-591649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):17, 53

               
               
               Conread position:483-644
               
               
               Cow position:chr24:31388463-31388304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):44, 37

               
               
               Conread position:483-671
               
               
               Cow position:chr24:11007151-11006958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:483-673
               
               
               Cow position:chr24:20969868-20970051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):56, 95

               
               
               Conread position:483-674
               
               
               Cow position:chr24:21264577-21264771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):44, 36

               
               
               Conread position:485-674
               
               
               Cow position:chr24:38375214-38375024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):42, 33

               
               
               Conread position:497-660
               
               
               Cow position:chr24:3627211-3627044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):30, 22

               
               
               Conread position:159-670
               
               
               Cow position:chr25:6682772-6683295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 24

               
               
               Conread position:162-405
               
               
               Cow position:chr25:1509687-1509932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):36, 44

               
               
               Conread position:162-483
               
               
               Cow position:chr25:18288492-18288815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 24

               
               
               Conread position:162-668
               
               
               Cow position:chr25:12319070-12319571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:529
               
               
               Alignm identity:356
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):30, 21

               
               
               Conread position:206-395
               
               
               Cow position:chr25:4504544-4504730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):41, 26

               
               
               Conread position:214-617
               
               
               Cow position:chr25:17190530-17190925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 14

               
               
               Conread position:218-494
               
               
               Cow position:chr25:35762812-35762532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):9, 216

               
               
               Conread position:230-673
               
               
               Cow position:chr25:7306498-7306061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 19

               
               
               Conread position:233-475
               
               
               Cow position:chr25:18929000-18929230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):185, 64

               
               
               Conread position:233-479
               
               
               Cow position:chr25:22348251-22348505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):10, 208

               
               
               Conread position:233-588
               
               
               Cow position:chr25:36020616-36020251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:248
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):76, 19

               
               
               Conread position:233-595
               
               
               Cow position:chr25:26679434-26679065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 203

               
               
               Conread position:233-673
               
               
               Cow position:chr25:14791960-14791515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):247, 199

               
               
               Conread position:234-379
               
               
               Cow position:chr25:7864537-7864393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):9, 95

               
               
               Conread position:234-392
               
               
               Cow position:chr25:17141309-17141149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:234-409
               
               
               Cow position:chr25:14210180-14210013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:234-427
               
               
               Cow position:chr25:22373282-22373478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):56, 19

               
               
               Conread position:234-448
               
               
               Cow position:chr25:31514388-31514170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):92, 19

               
               
               Conread position:234-469
               
               
               Cow position:chr25:14225571-14225330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):92, 18

               
               
               Conread position:234-472
               
               
               Cow position:chr25:12195014-12195259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):14, 170

               
               
               Conread position:234-552
               
               
               Cow position:chr25:13567188-13566847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):49, 16

               
               
               Conread position:234-559
               
               
               Cow position:chr25:4245870-4245563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):183, 91

               
               
               Conread position:234-566
               
               
               Cow position:chr25:9843387-9843044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):9, 41

               
               
               Conread position:234-566
               
               
               Cow position:chr25:20523032-20523364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:235
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):9, 43

               
               
               Conread position:234-569
               
               
               Cow position:chr25:22756814-22756472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):92, 15

               
               
               Conread position:234-661
               
               
               Cow position:chr25:21192736-21193169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):242, 100

               
               
               Conread position:234-673
               
               
               Cow position:chr25:1763288-1762870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 18

               
               
               Conread position:234-673
               
               
               Cow position:chr25:9989896-9990327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 206

               
               
               Conread position:234-673
               
               
               Cow position:chr25:30278992-30279444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 39

               
               
               Conread position:234-678
               
               
               Cow position:chr25:7641251-7641695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 19

               
               
               Conread position:234-717
               
               
               Cow position:chr25:29826624-29826125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:318
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):73, 194

               
               
               Conread position:235-417
               
               
               Cow position:chr25:36156015-36155840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):105, 84

               
               
               Conread position:235-420
               
               
               Cow position:chr25:15447695-15447514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):182, 17

               
               
               Conread position:235-469
               
               
               Cow position:chr25:37331841-37332068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:235-521
               
               
               Cow position:chr25:13621157-13621444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:201
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):8, 85

               
               
               Conread position:235-568
               
               
               Cow position:chr25:12509817-12510145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):183, 80

               
               
               Conread position:235-601
               
               
               Cow position:chr25:24651254-24651617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:250
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):195, 12

               
               
               Conread position:235-637
               
               
               Cow position:chr25:7750653-7750249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 43

               
               
               Conread position:235-650
               
               
               Cow position:chr25:34768543-34768934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:289
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):7, 71

               
               
               Conread position:235-673
               
               
               Cow position:chr25:15273868-15273453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 71

               
               
               Conread position:235-674
               
               
               Cow position:chr25:2415002-2414592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:305
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):8, 159

               
               
               Conread position:236-405
               
               
               Cow position:chr25:15999347-15999518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):71, 111

               
               
               Conread position:236-426
               
               
               Cow position:chr25:14164400-14164209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):82, 13

               
               
               Conread position:236-426
               
               
               Cow position:chr25:22565762-22565946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):7, 39

               
               
               Conread position:236-444
               
               
               Cow position:chr25:23998737-23998931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):178, 13

               
               
               Conread position:236-465
               
               
               Cow position:chr25:13823517-13823747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):98, 16

               
               
               Conread position:236-475
               
               
               Cow position:chr25:19584572-19584326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):87, 156

               
               
               Conread position:236-477
               
               
               Cow position:chr25:22154233-22153995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):90, 17

               
               
               Conread position:236-513
               
               
               Cow position:chr25:11823242-11823509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):43, 13

               
               
               Conread position:236-535
               
               
               Cow position:chr25:6292771-6292469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):73, 16

               
               
               Conread position:236-594
               
               
               Cow position:chr25:4521638-4521996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 93

               
               
               Conread position:236-621
               
               
               Cow position:chr25:34978655-34979053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:277
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):65, 13

               
               
               Conread position:236-629
               
               
               Cow position:chr25:14720934-14720559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 13

               
               
               Conread position:236-637
               
               
               Cow position:chr25:27801481-27801089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 11

               
               
               Conread position:236-640
               
               
               Cow position:chr25:17704939-17704545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 11

               
               
               Conread position:236-678
               
               
               Cow position:chr25:13380396-13380858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 16

               
               
               Conread position:237-387
               
               
               Cow position:chr25:22119452-22119605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):19, 41

               
               
               Conread position:237-411
               
               
               Cow position:chr25:21547358-21547185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:237-412
               
               
               Cow position:chr25:31657079-31657250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:237-430
               
               
               Cow position:chr25:28662308-28662120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:237-490
               
               
               Cow position:chr25:7726866-7726611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):77, 17

               
               
               Conread position:237-520
               
               
               Cow position:chr25:17725236-17724972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):89, 15

               
               
               Conread position:237-594
               
               
               Cow position:chr25:9002870-9002513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:257
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):72, 12

               
               
               Conread position:237-673
               
               
               Cow position:chr25:12098038-12097605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 15

               
               
               Conread position:237-674
               
               
               Cow position:chr25:8120982-8120538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 10

               
               
               Conread position:237-675
               
               
               Cow position:chr25:13325773-13325362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:302
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):14, 72

               
               
               Conread position:237-675
               
               
               Cow position:chr25:19679553-19679103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 12

               
               
               Conread position:238-387
               
               
               Cow position:chr25:28939939-28940089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:238-422
               
               
               Cow position:chr25:20085778-20085595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):88, 14

               
               
               Conread position:238-457
               
               
               Cow position:chr25:33101413-33101625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):177, 15

               
               
               Conread position:238-460
               
               
               Cow position:chr25:5808148-5807920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):88, 14

               
               
               Conread position:238-463
               
               
               Cow position:chr25:11780465-11780252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:238-478
               
               
               Cow position:chr25:35109078-35109310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):181, 15

               
               
               Conread position:238-483
               
               
               Cow position:chr25:18760511-18760753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):177, 14

               
               
               Conread position:238-545
               
               
               Cow position:chr25:7817186-7816871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):100, 27

               
               
               Conread position:238-550
               
               
               Cow position:chr25:1823891-1824208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 11

               
               
               Conread position:238-567
               
               
               Cow position:chr25:33686484-33686814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:237
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):63, 8

               
               
               Conread position:238-579
               
               
               Cow position:chr25:12609543-12609198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:258
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):82, 11

               
               
               Conread position:238-608
               
               
               Cow position:chr25:17914985-17914604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:248
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):76, 126

               
               
               Conread position:238-673
               
               
               Cow position:chr25:3992984-3992553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 168

               
               
               Conread position:238-673
               
               
               Cow position:chr25:5834043-5834490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:285
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):87, 14

               
               
               Conread position:238-673
               
               
               Cow position:chr25:10407211-10407655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 14

               
               
               Conread position:238-673
               
               
               Cow position:chr25:19130055-19129617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 112

               
               
               Conread position:238-673
               
               
               Cow position:chr25:30319248-30319686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 14

               
               
               Conread position:238-674
               
               
               Cow position:chr25:5846604-5847045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 311

               
               
               Conread position:238-675
               
               
               Cow position:chr25:33959049-33959499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:297
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):102, 67

               
               
               Conread position:238-676
               
               
               Cow position:chr25:10504134-10504575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 181

               
               
               Conread position:239-397
               
               
               Cow position:chr25:21082206-21082365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):86, 97

               
               
               Conread position:239-422
               
               
               Cow position:chr25:7311194-7311379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):89, 19

               
               
               Conread position:239-426
               
               
               Cow position:chr25:36370021-36369832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):75, 93

               
               
               Conread position:239-426
               
               
               Cow position:chr25:36375712-36375523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):75, 93

               
               
               Conread position:239-450
               
               
               Cow position:chr25:36872855-36873069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:167
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):79, 91

               
               
               Conread position:239-466
               
               
               Cow position:chr25:5637189-5637414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):178, 34

               
               
               Conread position:239-479
               
               
               Cow position:chr25:24167490-24167737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):62, 22

               
               
               Conread position:239-482
               
               
               Cow position:chr25:18810531-18810297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):179, 42

               
               
               Conread position:239-539
               
               
               Cow position:chr25:30817092-30816783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:218
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):90, 294

               
               
               Conread position:239-550
               
               
               Cow position:chr25:36555499-36555802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):174, 46

               
               
               Conread position:239-559
               
               
               Cow position:chr25:18201729-18202053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:237
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):87, 34

               
               
               Conread position:239-602
               
               
               Cow position:chr25:8485283-8485667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:258
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):96, 129

               
               
               Conread position:239-604
               
               
               Cow position:chr25:5921146-5920766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):99, 26

               
               
               Conread position:239-652
               
               
               Cow position:chr25:26089628-26090028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 10

               
               
               Conread position:239-669
               
               
               Cow position:chr25:41354104-41354539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:281
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):87, 35

               
               
               Conread position:239-673
               
               
               Cow position:chr25:1838443-1838003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 289

               
               
               Conread position:239-673
               
               
               Cow position:chr25:26087719-26087278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 71

               
               
               Conread position:239-675
               
               
               Cow position:chr25:6463828-6464268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:306
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):99, 124

               
               
               Conread position:239-675
               
               
               Cow position:chr25:20349074-20348619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:305
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):37, 126

               
               
               Conread position:239-675
               
               
               Cow position:chr25:33663709-33664135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 46

               
               
               Conread position:240-356
               
               
               Cow position:chr25:16491296-16491181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:91
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:240-390
               
               
               Cow position:chr25:26643011-26642856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:240-392
               
               
               Cow position:chr25:13565135-13565276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:240-409
               
               
               Cow position:chr25:20162286-20162460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:240-411
               
               
               Cow position:chr25:5922515-5922679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:240-433
               
               
               Cow position:chr25:15349710-15349901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):178, 88

               
               
               Conread position:240-434
               
               
               Cow position:chr25:31926185-31926373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):96, 46

               
               
               Conread position:240-435
               
               
               Cow position:chr25:35902945-35902752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:240-436
               
               
               Cow position:chr25:37965463-37965258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):7, 101

               
               
               Conread position:240-449
               
               
               Cow position:chr25:2362024-2361825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):166, 67

               
               
               Conread position:240-449
               
               
               Cow position:chr25:20203106-20202901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):177, 12

               
               
               Conread position:240-450
               
               
               Cow position:chr25:9573936-9574143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):174, 88

               
               
               Conread position:240-465
               
               
               Cow position:chr25:22298831-22298609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):175, 94

               
               
               Conread position:240-468
               
               
               Cow position:chr25:9616037-9615806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):86, 185

               
               
               Conread position:240-468
               
               
               Cow position:chr25:17919176-17918943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):70, 49

               
               
               Conread position:240-475
               
               
               Cow position:chr25:1840520-1840286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:180
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):174, 80

               
               
               Conread position:240-483
               
               
               Cow position:chr25:13826630-13826390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):174, 94

               
               
               Conread position:240-553
               
               
               Cow position:chr25:33557465-33557153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:230
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):178, 135

               
               
               Conread position:240-565
               
               
               Cow position:chr25:24202810-24203125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):72, 103

               
               
               Conread position:240-574
               
               
               Cow position:chr25:22731024-22730691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:239
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):171, 80

               
               
               Conread position:240-579
               
               
               Cow position:chr25:34378916-34379250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):75, 39

               
               
               Conread position:240-582
               
               
               Cow position:chr25:21668447-21668096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 99

               
               
               Conread position:240-590
               
               
               Cow position:chr25:31732134-31732492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:258
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):176, 70

               
               
               Conread position:240-592
               
               
               Cow position:chr25:30852964-30852597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:259
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):174, 96

               
               
               Conread position:240-596
               
               
               Cow position:chr25:41150765-41151124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 201

               
               
               Conread position:240-599
               
               
               Cow position:chr25:7380638-7381007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:258
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):10, 37

               
               
               Conread position:240-605
               
               
               Cow position:chr25:11316101-11315737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 95

               
               
               Conread position:240-605
               
               
               Cow position:chr25:13295062-13294728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):325, 35

               
               
               Conread position:240-629
               
               
               Cow position:chr25:13272768-13272376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 195

               
               
               Conread position:240-630
               
               
               Cow position:chr25:12755292-12755685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 160

               
               
               Conread position:240-667
               
               
               Cow position:chr25:11957003-11956594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 184

               
               
               Conread position:240-667
               
               
               Cow position:chr25:16921594-16922025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 188

               
               
               Conread position:240-669
               
               
               Cow position:chr25:19478889-19478454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 210

               
               
               Conread position:240-672
               
               
               Cow position:chr25:22315403-22314965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 94

               
               
               Conread position:240-672
               
               
               Cow position:chr25:26701218-26700802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 12

               
               
               Conread position:240-672
               
               
               Cow position:chr25:33550710-33550269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 196

               
               
               Conread position:240-672
               
               
               Cow position:chr25:36746249-36746682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 136

               
               
               Conread position:240-673
               
               
               Cow position:chr25:7217015-7216591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):240, 10

               
               
               Conread position:240-673
               
               
               Cow position:chr25:10643117-10643547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 79

               
               
               Conread position:240-673
               
               
               Cow position:chr25:20069912-20069483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 45

               
               
               Conread position:240-673
               
               
               Cow position:chr25:24573257-24572837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 34

               
               
               Conread position:240-673
               
               
               Cow position:chr25:36082067-36081636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 74

               
               
               Conread position:240-674
               
               
               Cow position:chr25:6473877-6474337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 303

               
               
               Conread position:240-674
               
               
               Cow position:chr25:18720929-18721343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 10

               
               
               Conread position:240-674
               
               
               Cow position:chr25:21245394-21245845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 197

               
               
               Conread position:240-674
               
               
               Cow position:chr25:24669253-24669669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 79

               
               
               Conread position:240-674
               
               
               Cow position:chr25:26224837-26225278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:306
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):177, 81

               
               
               Conread position:240-675
               
               
               Cow position:chr25:21289547-21289101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:299
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):93, 123

               
               
               Conread position:240-675
               
               
               Cow position:chr25:26655091-26654667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):244, 55

               
               
               Conread position:241-413
               
               
               Cow position:chr25:12223761-12223597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:241-420
               
               
               Cow position:chr25:18491234-18491056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):105, 9

               
               
               Conread position:241-421
               
               
               Cow position:chr25:18934438-18934617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:241-422
               
               
               Cow position:chr25:18551136-18551318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):85, 9

               
               
               Conread position:241-431
               
               
               Cow position:chr25:2662592-2662404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):163, 86

               
               
               Conread position:241-460
               
               
               Cow position:chr25:3744537-3744769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):50, 8

               
               
               Conread position:241-468
               
               
               Cow position:chr25:15565791-15566038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):6, 102

               
               
               Conread position:241-475
               
               
               Cow position:chr25:7551171-7551398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):223, 79

               
               
               Conread position:241-487
               
               
               Cow position:chr25:4157049-4157290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):228, 93

               
               
               Conread position:241-504
               
               
               Cow position:chr25:33555806-33555540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):66, 151

               
               
               Conread position:241-516
               
               
               Cow position:chr25:18156090-18156366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):75, 11

               
               
               Conread position:241-595
               
               
               Cow position:chr25:6996983-6996619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:249
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):83, 120

               
               
               Conread position:241-604
               
               
               Cow position:chr25:26136622-26136996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:255
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):85, 113

               
               
               Conread position:241-643
               
               
               Cow position:chr25:40904631-40905036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:283
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):66, 7

               
               
               Conread position:241-663
               
               
               Cow position:chr25:38958142-38957745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:291
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):164, 33

               
               
               Conread position:241-671
               
               
               Cow position:chr25:20008333-20007912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 200

               
               
               Conread position:241-673
               
               
               Cow position:chr25:11585727-11585281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 205

               
               
               Conread position:241-673
               
               
               Cow position:chr25:21191675-21191250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 56

               
               
               Conread position:241-673
               
               
               Cow position:chr25:38135951-38135511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 193

               
               
               Conread position:242-411
               
               
               Cow position:chr25:15305877-15305706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):65, 42

               
               
               Conread position:242-412
               
               
               Cow position:chr25:1802809-1802638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:242-417
               
               
               Cow position:chr25:33100769-33100597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:242-430
               
               
               Cow position:chr25:24115118-24115310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:242-452
               
               
               Cow position:chr25:2111233-2111034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):191, 68

               
               
               Conread position:242-474
               
               
               Cow position:chr25:9025320-9025089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):65, 89

               
               
               Conread position:242-488
               
               
               Cow position:chr25:40682934-40682686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):101, 85

               
               
               Conread position:242-611
               
               
               Cow position:chr25:26524159-26523786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:252
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):92, 249

               
               
               Conread position:242-666
               
               
               Cow position:chr25:37448624-37448207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:276
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):221, 65

               
               
               Conread position:242-668
               
               
               Cow position:chr25:20785390-20785816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 32

               
               
               Conread position:242-670
               
               
               Cow position:chr25:14833471-14833891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 71

               
               
               Conread position:242-673
               
               
               Cow position:chr25:11436627-11437039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 56

               
               
               Conread position:243-475
               
               
               Cow position:chr25:28597408-28597650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:186
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):48, 92

               
               
               Conread position:243-673
               
               
               Cow position:chr25:35348102-35347667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 81

               
               
               Conread position:245-442
               
               
               Cow position:chr25:11760266-11760455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):160, 50

               
               
               Conread position:245-449
               
               
               Cow position:chr25:11857792-11857998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):130, 80

               
               
               Conread position:245-464
               
               
               Cow position:chr25:33776254-33776039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):38, 94

               
               
               Conread position:245-475
               
               
               Cow position:chr25:9939063-9939295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):68, 48

               
               
               Conread position:245-521
               
               
               Cow position:chr25:7799746-7799468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):14, 29

               
               
               Conread position:245-540
               
               
               Cow position:chr25:11432756-11433057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):13, 43

               
               
               Conread position:245-672
               
               
               Cow position:chr25:9269534-9269135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:245-673
               
               
               Cow position:chr25:14513300-14512878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 40

               
               
               Conread position:246-406
               
               
               Cow position:chr25:8410840-8411001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):82, 60

               
               
               Conread position:246-427
               
               
               Cow position:chr25:7403145-7403329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):85, 181

               
               
               Conread position:246-452
               
               
               Cow position:chr25:10791626-10791829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):170, 66

               
               
               Conread position:246-468
               
               
               Cow position:chr25:17403669-17403453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:246-674
               
               
               Cow position:chr25:17658805-17658376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 190

               
               
               Conread position:249-415
               
               
               Cow position:chr25:10856526-10856690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:249-468
               
               
               Cow position:chr25:16372743-16372520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):30, 85

               
               
               Conread position:249-472
               
               
               Cow position:chr25:13223087-13222865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):169, 9

               
               
               Conread position:249-476
               
               
               Cow position:chr25:26072373-26072596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:249-506
               
               
               Cow position:chr25:26306013-26306276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):80, 187

               
               
               Conread position:249-516
               
               
               Cow position:chr25:36717102-36716841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):83, 27

               
               
               Conread position:249-568
               
               
               Cow position:chr25:19363870-19364194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 85

               
               
               Conread position:249-673
               
               
               Cow position:chr25:16318960-16319369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 42

               
               
               Conread position:250-427
               
               
               Cow position:chr25:22734195-22734017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):168, 84

               
               
               Conread position:251-468
               
               
               Cow position:chr25:33311135-33311358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:251-474
               
               
               Cow position:chr25:35339002-35339227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):138, 77

               
               
               Conread position:251-539
               
               
               Cow position:chr25:17119932-17119642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):68, 243

               
               
               Conread position:251-592
               
               
               Cow position:chr25:23779145-23779478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:244
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):165, 76

               
               
               Conread position:251-596
               
               
               Cow position:chr25:21893522-21893174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 69

               
               
               Conread position:252-553
               
               
               Cow position:chr25:7673494-7673171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:231
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:252-687
               
               
               Cow position:chr25:11139828-11139395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:287
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):81, 111

               
               
               Conread position:253-412
               
               
               Cow position:chr25:7684713-7684871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):67, 82

               
               
               Conread position:253-566
               
               
               Cow position:chr25:24207226-24207552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):74, 101

               
               
               Conread position:253-566
               
               
               Cow position:chr25:36835246-36835558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):171, 72

               
               
               Conread position:254-461
               
               
               Cow position:chr25:36873152-36873357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):164, 73

               
               
               Conread position:254-474
               
               
               Cow position:chr25:6259069-6258846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):121, 73

               
               
               Conread position:254-627
               
               
               Cow position:chr25:13443222-13443605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 169

               
               
               Conread position:254-630
               
               
               Cow position:chr25:2624979-2624611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 80

               
               
               Conread position:254-668
               
               
               Cow position:chr25:35612115-35612528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:298
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):73, 194

               
               
               Conread position:254-671
               
               
               Cow position:chr25:20023209-20023628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 43

               
               
               Conread position:254-675
               
               
               Cow position:chr25:20461301-20460883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 116

               
               
               Conread position:257-392
               
               
               Cow position:chr25:22571141-22571005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:257-422
               
               
               Cow position:chr25:23323679-23323506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:257-539
               
               
               Cow position:chr25:36872545-36872259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):62, 183

               
               
               Conread position:257-553
               
               
               Cow position:chr25:25716827-25716538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):211, 90

               
               
               Conread position:257-605
               
               
               Cow position:chr25:23244822-23245182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 70

               
               
               Conread position:258-415
               
               
               Cow position:chr25:11855366-11855525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):68, 137

               
               
               Conread position:258-416
               
               
               Cow position:chr25:14949630-14949788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):151, 90

               
               
               Conread position:258-444
               
               
               Cow position:chr25:8347834-8347645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):62, 78

               
               
               Conread position:258-549
               
               
               Cow position:chr25:17474331-17474627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:213
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):70, 18

               
               
               Conread position:258-673
               
               
               Cow position:chr25:23828949-23829354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 86

               
               
               Conread position:258-686
               
               
               Cow position:chr25:18988558-18988126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 9

               
               
               Conread position:259-406
               
               
               Cow position:chr25:447726-447870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:259-474
               
               
               Cow position:chr25:9107353-9107560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):159, 14

               
               
               Conread position:259-674
               
               
               Cow position:chr25:16867425-16866993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 186

               
               
               Conread position:260-635
               
               
               Cow position:chr25:17342640-17342250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:265
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):73, 268

               
               
               Conread position:260-675
               
               
               Cow position:chr25:17566770-17566348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:286
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):31, 217

               
               
               Conread position:261-521
               
               
               Cow position:chr25:12807221-12806959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):66, 159

               
               
               Conread position:262-673
               
               
               Cow position:chr25:33457906-33457469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 52

               
               
               Conread position:263-411
               
               
               Cow position:chr25:6782036-6781890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:265-675
               
               
               Cow position:chr25:18487844-18487435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:275
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):78, 97

               
               
               Conread position:267-640
               
               
               Cow position:chr25:8157337-8157714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 96

               
               
               Conread position:269-671
               
               
               Cow position:chr25:41387357-41387752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:265
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):48, 7

               
               
               Conread position:269-673
               
               
               Cow position:chr25:788427-788032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 70

               
               
               Conread position:271-674
               
               
               Cow position:chr25:16065050-16064658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 14

               
               
               Conread position:272-672
               
               
               Cow position:chr25:15715039-15714645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 61

               
               
               Conread position:277-438
               
               
               Cow position:chr25:15573551-15573385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:283-684
               
               
               Cow position:chr25:34170101-34169702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 28

               
               
               Conread position:286-630
               
               
               Cow position:chr25:25861191-25861554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:258
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):42, 77

               
               
               Conread position:286-673
               
               
               Cow position:chr25:22531435-22531050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 49

               
               
               Conread position:291-673
               
               
               Cow position:chr25:15254198-15254568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 146

               
               
               Conread position:300-674
               
               
               Cow position:chr25:33256495-33256130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 137

               
               
               Conread position:301-578
               
               
               Cow position:chr25:38421803-38421534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):128, 32

               
               
               Conread position:301-666
               
               
               Cow position:chr25:6961014-6961380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 28

               
               
               Conread position:301-686
               
               
               Cow position:chr25:11829775-11830147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:276
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):37, 124

               
               
               Conread position:302-539
               
               
               Cow position:chr25:24066530-24066760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:302-673
               
               
               Cow position:chr25:16400147-16400487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:256
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):31, 128

               
               
               Conread position:302-675
               
               
               Cow position:chr25:17975241-17975606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 21

               
               
               Conread position:305-674
               
               
               Cow position:chr25:28187812-28188187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 28

               
               
               Conread position:307-580
               
               
               Cow position:chr25:6688077-6687802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:207
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):173, 112

               
               
               Conread position:308-481
               
               
               Cow position:chr25:447140-447309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):107, 14

               
               
               Conread position:308-670
               
               
               Cow position:chr25:6424490-6424822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:257
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):219, 25

               
               
               Conread position:308-673
               
               
               Cow position:chr25:4547587-4547957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 10

               
               
               Conread position:310-439
               
               
               Cow position:chr25:14265086-14264954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):18, 92

               
               
               Conread position:310-450
               
               
               Cow position:chr25:15695391-15695253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:310-455
               
               
               Cow position:chr25:30624955-30625101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):104, 23

               
               
               Conread position:310-472
               
               
               Cow position:chr25:15463715-15463552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):104, 36

               
               
               Conread position:310-473
               
               
               Cow position:chr25:31762479-31762645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):123, 109

               
               
               Conread position:310-513
               
               
               Cow position:chr25:23505182-23504970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):16, 126

               
               
               Conread position:310-517
               
               
               Cow position:chr25:40931401-40931194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):155, 23

               
               
               Conread position:310-530
               
               
               Cow position:chr25:36120626-36120408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):108, 27

               
               
               Conread position:310-551
               
               
               Cow position:chr25:34241975-34242212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):16, 25

               
               
               Conread position:310-605
               
               
               Cow position:chr25:17144566-17144254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:231
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):17, 129

               
               
               Conread position:310-614
               
               
               Cow position:chr25:22750878-22751190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:223
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):105, 162

               
               
               Conread position:310-663
               
               
               Cow position:chr25:36017661-36017312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:253
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):157, 23

               
               
               Conread position:311-521
               
               
               Cow position:chr25:23745387-23745172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):113, 22

               
               
               Conread position:311-521
               
               
               Cow position:chr25:26052030-26051816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):100, 25

               
               
               Conread position:311-590
               
               
               Cow position:chr25:38982220-38981946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):226, 23

               
               
               Conread position:311-605
               
               
               Cow position:chr25:15440655-15440953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):97, 22

               
               
               Conread position:311-625
               
               
               Cow position:chr25:18906012-18905692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 22

               
               
               Conread position:312-458
               
               
               Cow position:chr25:15218258-15218115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:312-666
               
               
               Cow position:chr25:10217921-10218281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 161

               
               
               Conread position:313-672
               
               
               Cow position:chr25:23917967-23917604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 106

               
               
               Conread position:313-673
               
               
               Cow position:chr25:13569051-13569404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:251
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):32, 20

               
               
               Conread position:313-673
               
               
               Cow position:chr25:14196986-14196619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 20

               
               
               Conread position:314-467
               
               
               Cow position:chr25:26161093-26160935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):87, 20

               
               
               Conread position:314-512
               
               
               Cow position:chr25:36021449-36021247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):28, 125

               
               
               Conread position:314-531
               
               
               Cow position:chr25:5920205-5919988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):104, 30

               
               
               Conread position:314-605
               
               
               Cow position:chr25:32277483-32277772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):190, 19

               
               
               Conread position:315-589
               
               
               Cow position:chr25:5474107-5474383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):100, 19

               
               
               Conread position:316-662
               
               
               Cow position:chr25:35826159-35826499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):67, 17

               
               
               Conread position:316-667
               
               
               Cow position:chr25:36762227-36761875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 17

               
               
               Conread position:317-443
               
               
               Cow position:chr25:34967388-34967515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):101, 16

               
               
               Conread position:319-475
               
               
               Cow position:chr25:36840518-36840357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):7, 67

               
               
               Conread position:319-586
               
               
               Cow position:chr25:8961890-8961620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):99, 117

               
               
               Conread position:319-674
               
               
               Cow position:chr25:18564607-18564256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 116

               
               
               Conread position:320-540
               
               
               Cow position:chr25:4948080-4947862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):92, 14

               
               
               Conread position:320-540
               
               
               Cow position:chr25:23817721-23817945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):99, 118

               
               
               Conread position:320-565
               
               
               Cow position:chr25:14157745-14157489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):5, 116

               
               
               Conread position:320-674
               
               
               Cow position:chr25:11661698-11662058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 115

               
               
               Conread position:321-576
               
               
               Cow position:chr25:22242080-22241835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):226, 12

               
               
               Conread position:322-575
               
               
               Cow position:chr25:12997721-12997449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):93, 5

               
               
               Conread position:322-639
               
               
               Cow position:chr25:20133199-20133518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 18

               
               
               Conread position:323-672
               
               
               Cow position:chr25:61765-61421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:259
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):101, 10

               
               
               Conread position:323-672
               
               
               Cow position:chr25:12840603-12840954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:247
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):96, 10

               
               
               Conread position:323-673
               
               
               Cow position:chr25:26238978-26238634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 164

               
               
               Conread position:328-468
               
               
               Cow position:chr25:7379036-7379178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):86, 102

               
               
               Conread position:328-636
               
               
               Cow position:chr25:13387919-13387612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):92, 255

               
               
               Conread position:328-674
               
               
               Cow position:chr25:40321178-40321531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 19

               
               
               Conread position:330-672
               
               
               Cow position:chr25:9056287-9055959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:244
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):87, 54

               
               
               Conread position:337-479
               
               
               Cow position:chr25:18541844-18541988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):77, 98

               
               
               Conread position:337-545
               
               
               Cow position:chr25:14809375-14809172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):77, 98

               
               
               Conread position:337-673
               
               
               Cow position:chr25:12778439-12778769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:337-673
               
               
               Cow position:chr25:36036677-36037017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 98

               
               
               Conread position:337-674
               
               
               Cow position:chr25:2136452-2136113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:252
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):129, 75

               
               
               Conread position:340-623
               
               
               Cow position:chr25:4681325-4681046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 16

               
               
               Conread position:347-477
               
               
               Cow position:chr25:14211721-14211590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):71, 88

               
               
               Conread position:348-603
               
               
               Cow position:chr25:9349193-9349443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):87, 22

               
               
               Conread position:348-673
               
               
               Cow position:chr25:15377417-15377096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 55

               
               
               Conread position:354-517
               
               
               Cow position:chr25:7023253-7023085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:356-674
               
               
               Cow position:chr25:12817448-12817134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 54

               
               
               Conread position:357-674
               
               
               Cow position:chr25:20076579-20076255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):67, 62

               
               
               Conread position:358-673
               
               
               Cow position:chr25:37594487-37594177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):57, 77

               
               
               Conread position:367-672
               
               
               Cow position:chr25:20019931-20020223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):108, 46

               
               
               Conread position:368-600
               
               
               Cow position:chr25:19317336-19317094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):47, 33

               
               
               Conread position:368-674
               
               
               Cow position:chr25:12293676-12293989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:372-696
               
               
               Cow position:chr25:38425428-38425106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):47, 67

               
               
               Conread position:373-595
               
               
               Cow position:chr25:9316088-9315862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):57, 152

               
               
               Conread position:374-675
               
               
               Cow position:chr25:6885906-6886216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):56, 252

               
               
               Conread position:375-670
               
               
               Cow position:chr25:12081258-12081542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):44, 61

               
               
               Conread position:377-573
               
               
               Cow position:chr25:16570664-16570474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):41, 33

               
               
               Conread position:399-673
               
               
               Cow position:chr25:9956998-9957269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):25, 20

               
               
               Conread position:399-675
               
               
               Cow position:chr25:36779537-36779256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):78, 16

               
               
               Conread position:400-673
               
               
               Cow position:chr25:1735281-1735553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 38

               
               
               Conread position:407-590
               
               
               Cow position:chr25:35333190-35333000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):11, 115

               
               
               Conread position:408-666
               
               
               Cow position:chr25:36033466-36033206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):78, 27

               
               
               Conread position:408-673
               
               
               Cow position:chr25:25827502-25827225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:205
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:415-556
               
               
               Cow position:chr25:13640404-13640260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):20, 9

               
               
               Conread position:415-592
               
               
               Cow position:chr25:11054925-11054746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):79, 20

               
               
               Conread position:416-675
               
               
               Cow position:chr25:31732712-31732975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:199
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):19, 68

               
               
               Conread position:418-673
               
               
               Cow position:chr25:9023651-9023408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:425-589
               
               
               Cow position:chr25:32587867-32588036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):60, 10

               
               
               Conread position:425-673
               
               
               Cow position:chr25:8918265-8918515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 10

               
               
               Conread position:425-673
               
               
               Cow position:chr25:35340341-35340095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):98, 10

               
               
               Conread position:427-617
               
               
               Cow position:chr25:14945440-14945639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):57, 94

               
               
               Conread position:433-673
               
               
               Cow position:chr25:16001521-16001757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:195
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):45, 36

               
               
               Conread position:434-629
               
               
               Cow position:chr25:12520961-12521154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):93, 31

               
               
               Conread position:435-675
               
               
               Cow position:chr25:4002804-4002556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):49, 26

               
               
               Conread position:436-621
               
               
               Cow position:chr25:23323201-23323017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):86, 29

               
               
               Conread position:436-629
               
               
               Cow position:chr25:3983041-3982851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):49, 10

               
               
               Conread position:438-676
               
               
               Cow position:chr25:7329548-7329303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 80

               
               
               Conread position:439-647
               
               
               Cow position:chr25:13736315-13736522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):47, 88

               
               
               Conread position:439-667
               
               
               Cow position:chr25:12204474-12204239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):27, 88

               
               
               Conread position:439-672
               
               
               Cow position:chr25:13642314-13642552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):88, 80

               
               
               Conread position:440-673
               
               
               Cow position:chr25:9961176-9961415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):24, 39

               
               
               Conread position:440-674
               
               
               Cow position:chr25:5515011-5514768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:186
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:440-675
               
               
               Cow position:chr25:15694979-15694744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):51, 77

               
               
               Conread position:442-673
               
               
               Cow position:chr25:12824022-12824251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):39, 81

               
               
               Conread position:448-673
               
               
               Cow position:chr25:8347500-8347272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):18, 78

               
               
               Conread position:451-670
               
               
               Cow position:chr25:6815229-6815014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):43, 33

               
               
               Conread position:461-675
               
               
               Cow position:chr25:36026981-36026768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):75, 20

               
               
               Conread position:462-667
               
               
               Cow position:chr25:15286565-15286771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):21, 59

               
               
               Conread position:483-629
               
               
               Cow position:chr25:35110172-35110323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):44, 36

               
               
               Conread position:485-671
               
               
               Cow position:chr25:17712488-17712299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):42, 34

               
               
               Conread position:162-438
               
               
               Cow position:chr26:25407684-25407413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):30, 45

               
               
               Conread position:206-423
               
               
               Cow position:chr26:10700645-10700869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):34, 87

               
               
               Conread position:209-432
               
               
               Cow position:chr26:21822799-21823017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):133, 110

               
               
               Conread position:225-665
               
               
               Cow position:chr26:9604788-9604351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 62

               
               
               Conread position:231-675
               
               
               Cow position:chr26:33096328-33096786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:298
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):107, 233

               
               
               Conread position:233-691
               
               
               Cow position:chr26:20291468-20291919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 100

               
               
               Conread position:234-383
               
               
               Cow position:chr26:12537319-12537465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):13, 86

               
               
               Conread position:234-433
               
               
               Cow position:chr26:34114487-34114288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):85, 18

               
               
               Conread position:234-468
               
               
               Cow position:chr26:11672523-11672285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):93, 18

               
               
               Conread position:234-468
               
               
               Cow position:chr26:11875004-11875232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):180, 14

               
               
               Conread position:234-468
               
               
               Cow position:chr26:19636514-19636280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):9, 40

               
               
               Conread position:234-477
               
               
               Cow position:chr26:5666263-5666027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):134, 15

               
               
               Conread position:234-500
               
               
               Cow position:chr26:5836596-5836865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):105, 13

               
               
               Conread position:234-670
               
               
               Cow position:chr26:23112263-23111846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:293
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):11, 183

               
               
               Conread position:234-673
               
               
               Cow position:chr26:6037198-6037658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:303
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):73, 123

               
               
               Conread position:234-673
               
               
               Cow position:chr26:26887913-26888352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 101

               
               
               Conread position:234-673
               
               
               Cow position:chr26:32897657-32898089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 15

               
               
               Conread position:234-693
               
               
               Cow position:chr26:21243310-21242865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):250, 76

               
               
               Conread position:235-417
               
               
               Cow position:chr26:1041225-1041040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:235-421
               
               
               Cow position:chr26:8811697-8811508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):91, 157

               
               
               Conread position:235-460
               
               
               Cow position:chr26:22429623-22429835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:235-590
               
               
               Cow position:chr26:32834351-32834713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 206

               
               
               Conread position:235-605
               
               
               Cow position:chr26:22892225-22892598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 85

               
               
               Conread position:235-673
               
               
               Cow position:chr26:16784048-16783604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 14

               
               
               Conread position:236-422
               
               
               Cow position:chr26:27768488-27768302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):95, 18

               
               
               Conread position:236-434
               
               
               Cow position:chr26:16585651-16585456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):12, 73

               
               
               Conread position:236-442
               
               
               Cow position:chr26:13862816-13863020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):7, 94

               
               
               Conread position:236-511
               
               
               Cow position:chr26:33392617-33392336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):55, 12

               
               
               Conread position:236-517
               
               
               Cow position:chr26:22033700-22033420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):7, 39

               
               
               Conread position:236-535
               
               
               Cow position:chr26:6515056-6514762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):8, 72

               
               
               Conread position:236-569
               
               
               Cow position:chr26:11538756-11538419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):64, 11

               
               
               Conread position:236-593
               
               
               Cow position:chr26:9535735-9535376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 83

               
               
               Conread position:236-672
               
               
               Cow position:chr26:32601577-32601134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 204

               
               
               Conread position:237-594
               
               
               Cow position:chr26:19446358-19445984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:259
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):70, 162

               
               
               Conread position:237-605
               
               
               Cow position:chr26:586653-587026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:261
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):70, 15

               
               
               Conread position:237-673
               
               
               Cow position:chr26:4584991-4585428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 153

               
               
               Conread position:237-674
               
               
               Cow position:chr26:7148081-7148518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 12

               
               
               Conread position:237-687
               
               
               Cow position:chr26:13978911-13979364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:301
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):161, 15

               
               
               Conread position:238-412
               
               
               Cow position:chr26:16166474-16166649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):90, 38

               
               
               Conread position:238-412
               
               
               Cow position:chr26:23106210-23106382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):10, 42

               
               
               Conread position:238-422
               
               
               Cow position:chr26:12807086-12807265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):178, 38

               
               
               Conread position:238-448
               
               
               Cow position:chr26:5407199-5406987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):74, 35

               
               
               Conread position:238-458
               
               
               Cow position:chr26:19146122-19145900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):88, 16

               
               
               Conread position:238-468
               
               
               Cow position:chr26:18872831-18872596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):75, 14

               
               
               Conread position:238-477
               
               
               Cow position:chr26:25663330-25663565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):89, 15

               
               
               Conread position:238-544
               
               
               Cow position:chr26:13974924-13975224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:203
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):63, 14

               
               
               Conread position:238-667
               
               
               Cow position:chr26:10764433-10764007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 14

               
               
               Conread position:238-668
               
               
               Cow position:chr26:16550206-16549767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 14

               
               
               Conread position:238-673
               
               
               Cow position:chr26:6029559-6029981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:301
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):117, 48

               
               
               Conread position:238-673
               
               
               Cow position:chr26:6794366-6793922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 36

               
               
               Conread position:238-673
               
               
               Cow position:chr26:21418234-21418670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 15

               
               
               Conread position:238-673
               
               
               Cow position:chr26:23096973-23097395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 145

               
               
               Conread position:238-674
               
               
               Cow position:chr26:7642354-7642797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 95

               
               
               Conread position:239-410
               
               
               Cow position:chr26:31711846-31712020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):61, 46

               
               
               Conread position:239-412
               
               
               Cow position:chr26:21320164-21319992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:239-417
               
               
               Cow position:chr26:21279743-21279920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:239-422
               
               
               Cow position:chr26:3192229-3192408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):176, 34

               
               
               Conread position:239-422
               
               
               Cow position:chr26:15132859-15132672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):87, 108

               
               
               Conread position:239-424
               
               
               Cow position:chr26:27482344-27482532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:239-425
               
               
               Cow position:chr26:1894163-1894342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):61, 86

               
               
               Conread position:239-468
               
               
               Cow position:chr26:32655389-32655621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):98, 28

               
               
               Conread position:239-481
               
               
               Cow position:chr26:8478660-8478898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):216, 34

               
               
               Conread position:239-481
               
               
               Cow position:chr26:9099315-9099554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):176, 85

               
               
               Conread position:239-547
               
               
               Cow position:chr26:30861530-30861842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):104, 118

               
               
               Conread position:239-576
               
               
               Cow position:chr26:20551348-20551018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):222, 56

               
               
               Conread position:239-586
               
               
               Cow position:chr26:34026815-34027175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:253
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):87, 121

               
               
               Conread position:239-604
               
               
               Cow position:chr26:14309293-14308939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):163, 72

               
               
               Conread position:239-633
               
               
               Cow position:chr26:830032-829630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 204

               
               
               Conread position:239-635
               
               
               Cow position:chr26:35449274-35448883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 34

               
               
               Conread position:239-670
               
               
               Cow position:chr26:12144898-12145322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 197

               
               
               Conread position:239-671
               
               
               Cow position:chr26:14293368-14292948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:293
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):38, 86

               
               
               Conread position:239-673
               
               
               Cow position:chr26:18825065-18825491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:289
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):173, 95

               
               
               Conread position:239-673
               
               
               Cow position:chr26:33475918-33475455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:313
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):89, 207

               
               
               Conread position:239-674
               
               
               Cow position:chr26:34314897-34314457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 34

               
               
               Conread position:239-675
               
               
               Cow position:chr26:8811349-8810912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 46

               
               
               Conread position:240-417
               
               
               Cow position:chr26:29900843-29901020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:240-422
               
               
               Cow position:chr26:13705551-13705742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):67, 115

               
               
               Conread position:240-431
               
               
               Cow position:chr26:2930035-2930231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):12, 181

               
               
               Conread position:240-434
               
               
               Cow position:chr26:6487574-6487765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:240-434
               
               
               Cow position:chr26:26244952-26245146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):80, 9

               
               
               Conread position:240-448
               
               
               Cow position:chr26:32517250-32517448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):173, 70

               
               
               Conread position:240-450
               
               
               Cow position:chr26:16795995-16796200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:240-465
               
               
               Cow position:chr26:7314846-7314613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):79, 201

               
               
               Conread position:240-467
               
               
               Cow position:chr26:32518696-32518459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):59, 45

               
               
               Conread position:240-468
               
               
               Cow position:chr26:34610969-34611193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):178, 55

               
               
               Conread position:240-475
               
               
               Cow position:chr26:2701767-2702004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):86, 113

               
               
               Conread position:240-477
               
               
               Cow position:chr26:34559954-34560189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):178, 94

               
               
               Conread position:240-482
               
               
               Cow position:chr26:18530005-18529762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):63, 162

               
               
               Conread position:240-503
               
               
               Cow position:chr26:24453691-24453954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):8, 35

               
               
               Conread position:240-539
               
               
               Cow position:chr26:7687025-7687324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 196

               
               
               Conread position:240-539
               
               
               Cow position:chr26:13828273-13827989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):10, 35

               
               
               Conread position:240-540
               
               
               Cow position:chr26:23925061-23924763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):178, 73

               
               
               Conread position:240-558
               
               
               Cow position:chr26:34724657-34724982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):231, 167

               
               
               Conread position:240-578
               
               
               Cow position:chr26:33253099-33253448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 93

               
               
               Conread position:240-579
               
               
               Cow position:chr26:7314875-7315230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:258
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):69, 31

               
               
               Conread position:240-587
               
               
               Cow position:chr26:14905599-14905946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:251
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):176, 66

               
               
               Conread position:240-590
               
               
               Cow position:chr26:15212009-15211666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):176, 44

               
               
               Conread position:240-594
               
               
               Cow position:chr26:12964464-12964839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 58

               
               
               Conread position:240-599
               
               
               Cow position:chr26:8306616-8306241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:252
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):189, 114

               
               
               Conread position:240-602
               
               
               Cow position:chr26:647505-647867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 187

               
               
               Conread position:240-616
               
               
               Cow position:chr26:33456310-33456661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:262
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):184, 69

               
               
               Conread position:240-624
               
               
               Cow position:chr26:28251371-28250973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 57

               
               
               Conread position:240-650
               
               
               Cow position:chr26:32815571-32815970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:283
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):104, 94

               
               
               Conread position:240-663
               
               
               Cow position:chr26:8307314-8307721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 34

               
               
               Conread position:240-663
               
               
               Cow position:chr26:25526464-25526038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 79

               
               
               Conread position:240-665
               
               
               Cow position:chr26:30127778-30128229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:286
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):76, 33

               
               
               Conread position:240-671
               
               
               Cow position:chr26:33011463-33011878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:307
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):172, 65

               
               
               Conread position:240-674
               
               
               Cow position:chr26:3071764-3072182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 68

               
               
               Conread position:240-679
               
               
               Cow position:chr26:34060553-34060109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 44

               
               
               Conread position:240-686
               
               
               Cow position:chr26:21636834-21637268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 67

               
               
               Conread position:240-691
               
               
               Cow position:chr26:25394259-25393793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 96

               
               
               Conread position:241-387
               
               
               Cow position:chr26:11800423-11800282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:241-387
               
               
               Cow position:chr26:13022679-13022533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:241-468
               
               
               Cow position:chr26:32831360-32831586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):75, 38

               
               
               Conread position:241-521
               
               
               Cow position:chr26:14481350-14481619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):173, 91

               
               
               Conread position:241-540
               
               
               Cow position:chr26:4807775-4807477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:221
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):6, 120

               
               
               Conread position:241-586
               
               
               Cow position:chr26:33074279-33074634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:237
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):7, 209

               
               
               Conread position:241-596
               
               
               Cow position:chr26:20770066-20769710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 12

               
               
               Conread position:241-663
               
               
               Cow position:chr26:34108960-34108555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 44

               
               
               Conread position:241-672
               
               
               Cow position:chr26:9492135-9491711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):166, 79

               
               
               Conread position:241-672
               
               
               Cow position:chr26:26293963-26294405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:241-673
               
               
               Cow position:chr26:3707016-3706582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 33

               
               
               Conread position:241-673
               
               
               Cow position:chr26:6714082-6714501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 181

               
               
               Conread position:241-674
               
               
               Cow position:chr26:17057891-17057463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 68

               
               
               Conread position:242-392
               
               
               Cow position:chr26:12891756-12891905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):28, 91

               
               
               Conread position:242-452
               
               
               Cow position:chr26:31888944-31888737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):175, 7

               
               
               Conread position:242-492
               
               
               Cow position:chr26:32830299-32830046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):82, 96

               
               
               Conread position:242-519
               
               
               Cow position:chr26:20824908-20825173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):165, 7

               
               
               Conread position:242-559
               
               
               Cow position:chr26:31137249-31137557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):5, 94

               
               
               Conread position:242-592
               
               
               Cow position:chr26:31633946-31633585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 7

               
               
               Conread position:242-594
               
               
               Cow position:chr26:23848580-23848945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):173, 85

               
               
               Conread position:242-617
               
               
               Cow position:chr26:3758002-3757628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:256
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):16, 111

               
               
               Conread position:242-671
               
               
               Cow position:chr26:4854759-4854321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 86

               
               
               Conread position:242-673
               
               
               Cow position:chr26:19459912-19459454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 99

               
               
               Conread position:242-673
               
               
               Cow position:chr26:32955430-32955842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:302
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):168, 44

               
               
               Conread position:242-673
               
               
               Cow position:chr26:33112171-33112602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 8

               
               
               Conread position:242-674
               
               
               Cow position:chr26:33201855-33202278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 86

               
               
               Conread position:243-480
               
               
               Cow position:chr26:12940622-12940376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):64, 31

               
               
               Conread position:243-518
               
               
               Cow position:chr26:19591693-19591418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):175, 77

               
               
               Conread position:243-673
               
               
               Cow position:chr26:798093-798516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 64

               
               
               Conread position:245-387
               
               
               Cow position:chr26:20846957-20846816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:245-422
               
               
               Cow position:chr26:6823372-6823194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):62, 39

               
               
               Conread position:245-475
               
               
               Cow position:chr26:16435438-16435675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):50, 21

               
               
               Conread position:245-572
               
               
               Cow position:chr26:12893217-12893542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 73

               
               
               Conread position:245-634
               
               
               Cow position:chr26:32672211-32672619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:277
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):29, 369

               
               
               Conread position:245-637
               
               
               Cow position:chr26:22249277-22249664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 65

               
               
               Conread position:245-671
               
               
               Cow position:chr26:13802321-13801895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 75

               
               
               Conread position:246-429
               
               
               Cow position:chr26:8341695-8341522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):172, 25

               
               
               Conread position:246-459
               
               
               Cow position:chr26:31173484-31173269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):72, 108

               
               
               Conread position:246-588
               
               
               Cow position:chr26:26950250-26950581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):173, 34

               
               
               Conread position:246-644
               
               
               Cow position:chr26:4167138-4167545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:283
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):82, 121

               
               
               Conread position:249-387
               
               
               Cow position:chr26:32842575-32842716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):67, 116

               
               
               Conread position:249-423
               
               
               Cow position:chr26:31062634-31062449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):58, 16

               
               
               Conread position:249-520
               
               
               Cow position:chr26:23623835-23624110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):79, 96

               
               
               Conread position:249-674
               
               
               Cow position:chr26:2994491-2994892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 76

               
               
               Conread position:251-397
               
               
               Cow position:chr26:7085554-7085700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):75, 114

               
               
               Conread position:251-425
               
               
               Cow position:chr26:12028028-12028204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):77, 102

               
               
               Conread position:251-466
               
               
               Cow position:chr26:830443-830646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):95, 29

               
               
               Conread position:251-673
               
               
               Cow position:chr26:33045273-33044863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:296
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):57, 34

               
               
               Conread position:252-535
               
               
               Cow position:chr26:29889309-29889577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:252-624
               
               
               Cow position:chr26:22132013-22131626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:247
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):87, 111

               
               
               Conread position:253-428
               
               
               Cow position:chr26:26407586-26407759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):99, 73

               
               
               Conread position:253-434
               
               
               Cow position:chr26:16801190-16801004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):73, 133

               
               
               Conread position:254-453
               
               
               Cow position:chr26:9501913-9501712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):72, 22

               
               
               Conread position:254-559
               
               
               Cow position:chr26:23671622-23671305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):81, 187

               
               
               Conread position:254-673
               
               
               Cow position:chr26:35704577-35704168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 32

               
               
               Conread position:255-672
               
               
               Cow position:chr26:27491293-27491722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 185

               
               
               Conread position:257-484
               
               
               Cow position:chr26:28423486-28423260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:172
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):161, 76

               
               
               Conread position:257-606
               
               
               Cow position:chr26:10965385-10965735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:255
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):59, 249

               
               
               Conread position:259-410
               
               
               Cow position:chr26:29897382-29897235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:259-578
               
               
               Cow position:chr26:34661047-34660717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):160, 77

               
               
               Conread position:259-598
               
               
               Cow position:chr26:22348812-22349159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:245
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):65, 76

               
               
               Conread position:259-672
               
               
               Cow position:chr26:14950948-14951364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 14

               
               
               Conread position:261-480
               
               
               Cow position:chr26:29663957-29664182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):49, 179

               
               
               Conread position:261-558
               
               
               Cow position:chr26:24240880-24240569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):63, 15

               
               
               Conread position:261-579
               
               
               Cow position:chr26:22152419-22152097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:235
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):157, 12

               
               
               Conread position:261-685
               
               
               Cow position:chr26:23141906-23142328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:291
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):76, 36

               
               
               Conread position:262-600
               
               
               Cow position:chr26:2739242-2739605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 280

               
               
               Conread position:272-460
               
               
               Cow position:chr26:18381494-18381310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):151, 49

               
               
               Conread position:272-594
               
               
               Cow position:chr26:33736370-33736693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 48

               
               
               Conread position:272-674
               
               
               Cow position:chr26:32670313-32670711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 62

               
               
               Conread position:274-430
               
               
               Cow position:chr26:7525026-7525178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):132, 6

               
               
               Conread position:277-600
               
               
               Cow position:chr26:31903350-31903015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:236
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):49, 248

               
               
               Conread position:279-640
               
               
               Cow position:chr26:34256475-34256116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:257
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):182, 54

               
               
               Conread position:279-673
               
               
               Cow position:chr26:11371086-11370716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:267
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):186, 54

               
               
               Conread position:280-539
               
               
               Cow position:chr26:6865202-6864932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):29, 7

               
               
               Conread position:289-674
               
               
               Cow position:chr26:12237861-12238263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:267
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):130, 38

               
               
               Conread position:295-482
               
               
               Cow position:chr26:5985655-5985837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:299-536
               
               
               Cow position:chr26:32836398-32836162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):119, 183

               
               
               Conread position:301-673
               
               
               Cow position:chr26:31605564-31605189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 138

               
               
               Conread position:303-633
               
               
               Cow position:chr26:23315929-23315588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 7

               
               
               Conread position:307-563
               
               
               Cow position:chr26:31556782-31557047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):40, 5

               
               
               Conread position:307-673
               
               
               Cow position:chr26:8699896-8700268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 117

               
               
               Conread position:308-473
               
               
               Cow position:chr26:6337939-6337776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):10, 118

               
               
               Conread position:308-674
               
               
               Cow position:chr26:19774151-19774523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 24

               
               
               Conread position:310-465
               
               
               Cow position:chr26:16594353-16594508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):22, 85

               
               
               Conread position:310-466
               
               
               Cow position:chr26:7157458-7157616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:310-468
               
               
               Cow position:chr26:33242036-33241877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):108, 24

               
               
               Conread position:310-473
               
               
               Cow position:chr26:32863522-32863683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):108, 44

               
               
               Conread position:310-477
               
               
               Cow position:chr26:32571440-32571270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):106, 27

               
               
               Conread position:310-477
               
               
               Cow position:chr26:34154281-34154112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):103, 23

               
               
               Conread position:310-637
               
               
               Cow position:chr26:17148847-17148518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:237
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):104, 23

               
               
               Conread position:310-640
               
               
               Cow position:chr26:14175430-14175096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 125

               
               
               Conread position:310-672
               
               
               Cow position:chr26:16922085-16921727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 79

               
               
               Conread position:310-673
               
               
               Cow position:chr26:11263786-11263419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 89

               
               
               Conread position:310-673
               
               
               Cow position:chr26:32553838-32553463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):62, 223

               
               
               Conread position:313-539
               
               
               Cow position:chr26:677836-678063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):105, 21

               
               
               Conread position:313-674
               
               
               Cow position:chr26:8353113-8352739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 20

               
               
               Conread position:314-630
               
               
               Cow position:chr26:22354557-22354238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 19

               
               
               Conread position:315-675
               
               
               Cow position:chr26:32776370-32776726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:254
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):169, 18

               
               
               Conread position:316-649
               
               
               Cow position:chr26:19111055-19110708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:236
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):34, 41

               
               
               Conread position:317-614
               
               
               Cow position:chr26:23582804-23583109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):16, 37

               
               
               Conread position:320-672
               
               
               Cow position:chr26:12890426-12890079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):26, 31

               
               
               Conread position:320-673
               
               
               Cow position:chr26:613536-613890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 13

               
               
               Conread position:322-673
               
               
               Cow position:chr26:21859960-21859606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:234
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):102, 97

               
               
               Conread position:323-673
               
               
               Cow position:chr26:13021011-13021367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 11

               
               
               Conread position:324-613
               
               
               Cow position:chr26:8643076-8642784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:227
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):8, 79

               
               
               Conread position:327-558
               
               
               Cow position:chr26:6470145-6470380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):62, 87

               
               
               Conread position:328-484
               
               
               Cow position:chr26:18740927-18741086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:328-492
               
               
               Cow position:chr26:25074847-25074681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):85, 156

               
               
               Conread position:328-667
               
               
               Cow position:chr26:33566914-33567255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 109

               
               
               Conread position:331-534
               
               
               Cow position:chr26:18876835-18877036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):85, 93

               
               
               Conread position:331-672
               
               
               Cow position:chr26:5246351-5246705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:250
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):88, 107

               
               
               Conread position:337-466
               
               
               Cow position:chr26:17652081-17651950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):78, 98

               
               
               Conread position:337-534
               
               
               Cow position:chr26:34106514-34106320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):190, 78

               
               
               Conread position:337-610
               
               
               Cow position:chr26:16721985-16721708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):77, 127

               
               
               Conread position:337-671
               
               
               Cow position:chr26:34847865-34847526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:236
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):81, 186

               
               
               Conread position:337-674
               
               
               Cow position:chr26:26466611-26466938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 76

               
               
               Conread position:338-646
               
               
               Cow position:chr26:30568543-30568848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):143, 81

               
               
               Conread position:338-671
               
               
               Cow position:chr26:32652614-32652942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:236
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):80, 96

               
               
               Conread position:340-613
               
               
               Cow position:chr26:12155005-12155282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):78, 49

               
               
               Conread position:342-675
               
               
               Cow position:chr26:32683231-32682894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):87, 15

               
               
               Conread position:346-673
               
               
               Cow position:chr26:11134579-11134914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:248
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):72, 18

               
               
               Conread position:351-559
               
               
               Cow position:chr26:32832291-32832079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):116, 77

               
               
               Conread position:354-673
               
               
               Cow position:chr26:26735-27046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):122, 61

               
               
               Conread position:356-511
               
               
               Cow position:chr26:22602936-22603095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):59, 79

               
               
               Conread position:359-675
               
               
               Cow position:chr26:818365-818684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):111, 227

               
               
               Conread position:359-683
               
               
               Cow position:chr26:24629831-24629518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):161, 71

               
               
               Conread position:368-665
               
               
               Cow position:chr26:5102734-5103032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):62, 51

               
               
               Conread position:369-652
               
               
               Cow position:chr26:20013565-20013282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):50, 13

               
               
               Conread position:371-605
               
               
               Cow position:chr26:14578414-14578172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):54, 48

               
               
               Conread position:372-630
               
               
               Cow position:chr26:16179648-16179384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):52, 47

               
               
               Conread position:372-672
               
               
               Cow position:chr26:21992188-21991895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):47, 216

               
               
               Conread position:372-673
               
               
               Cow position:chr26:31701898-31701597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):57, 103

               
               
               Conread position:373-674
               
               
               Cow position:chr26:18917987-18918290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):54, 132

               
               
               Conread position:390-613
               
               
               Cow position:chr26:10747566-10747784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):137, 23

               
               
               Conread position:390-641
               
               
               Cow position:chr26:6724170-6723918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):10, 26

               
               
               Conread position:396-673
               
               
               Cow position:chr26:8745764-8746050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 17

               
               
               Conread position:399-605
               
               
               Cow position:chr26:11270294-11270094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):21, 39

               
               
               Conread position:399-673
               
               
               Cow position:chr26:29353448-29353729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):20, 39

               
               
               Conread position:399-674
               
               
               Cow position:chr26:10767857-10768120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):128, 19

               
               
               Conread position:400-675
               
               
               Cow position:chr26:16166857-16167133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):30, 189

               
               
               Conread position:407-673
               
               
               Cow position:chr26:20846675-20846405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 78

               
               
               Conread position:410-674
               
               
               Cow position:chr26:9867083-9867334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):120, 25

               
               
               Conread position:416-670
               
               
               Cow position:chr26:8186703-8186435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):8, 89

               
               
               Conread position:417-673
               
               
               Cow position:chr26:31779520-31779256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):67, 19

               
               
               Conread position:417-673
               
               
               Cow position:chr26:32013671-32013413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):59, 18

               
               
               Conread position:418-592
               
               
               Cow position:chr26:8819821-8820004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):62, 17

               
               
               Conread position:418-600
               
               
               Cow position:chr26:7156008-7155827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):65, 17

               
               
               Conread position:419-675
               
               
               Cow position:chr26:32688472-32688209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):66, 17

               
               
               Conread position:429-634
               
               
               Cow position:chr26:27761628-27761828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):6, 52

               
               
               Conread position:433-673
               
               
               Cow position:chr26:7525450-7525686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:184
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):32, 84

               
               
               Conread position:434-675
               
               
               Cow position:chr26:23925963-23926198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):44, 87

               
               
               Conread position:436-673
               
               
               Cow position:chr26:3181919-3182167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:436-674
               
               
               Cow position:chr26:6447577-6447827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:193
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):33, 89

               
               
               Conread position:440-666
               
               
               Cow position:chr26:25737487-25737260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):45, 14

               
               
               Conread position:440-672
               
               
               Cow position:chr26:31890108-31889871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):87, 30

               
               
               Conread position:441-673
               
               
               Cow position:chr26:34738132-34738366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):26, 86

               
               
               Conread position:455-663
               
               
               Cow position:chr26:32026368-32026579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):15, 27

               
               
               Conread position:456-674
               
               
               Cow position:chr26:21351691-21351468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):27, 13

               
               
               Conread position:463-675
               
               
               Cow position:chr26:13270681-13270898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):64, 57

               
               
               Conread position:477-674
               
               
               Cow position:chr26:7961610-7961417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):50, 43

               
               
               Conread position:485-675
               
               
               Cow position:chr26:30806535-30806732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):44, 34

               
               
               Conread position:205-447
               
               
               Cow position:chr27:19557113-19557349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):33, 47

               
               
               Conread position:205-644
               
               
               Cow position:chr27:30872340-30871897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 104

               
               
               Conread position:223-671
               
               
               Cow position:chr27:23918297-23917865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:308
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):20, 105

               
               
               Conread position:229-409
               
               
               Cow position:chr27:178607-178787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:230-675
               
               
               Cow position:chr27:6499801-6500258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 130

               
               
               Conread position:233-387
               
               
               Cow position:chr27:27012444-27012601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:233-673
               
               
               Cow position:chr27:22220297-22220745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 206

               
               
               Conread position:233-675
               
               
               Cow position:chr27:16786580-16787020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:292
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):96, 19

               
               
               Conread position:234-387
               
               
               Cow position:chr27:21054207-21054362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):92, 18

               
               
               Conread position:234-388
               
               
               Cow position:chr27:19991897-19992052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):10, 95

               
               
               Conread position:234-411
               
               
               Cow position:chr27:9253363-9253187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:234-421
               
               
               Cow position:chr27:11208808-11208617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:234-424
               
               
               Cow position:chr27:28476358-28476175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:234-447
               
               
               Cow position:chr27:24693166-24693377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):9, 86

               
               
               Conread position:234-473
               
               
               Cow position:chr27:19508762-19509003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):67, 15

               
               
               Conread position:234-475
               
               
               Cow position:chr27:9977435-9977678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):61, 41

               
               
               Conread position:234-483
               
               
               Cow position:chr27:23994665-23994420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):92, 15

               
               
               Conread position:234-572
               
               
               Cow position:chr27:23510723-23511084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:262
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):9, 170

               
               
               Conread position:234-584
               
               
               Cow position:chr27:4858870-4858540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):185, 76

               
               
               Conread position:234-592
               
               
               Cow position:chr27:17995191-17994828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):74, 18

               
               
               Conread position:234-623
               
               
               Cow position:chr27:17331241-17331644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 131

               
               
               Conread position:234-640
               
               
               Cow position:chr27:11480888-11480471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 15

               
               
               Conread position:234-646
               
               
               Cow position:chr27:4944758-4944364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 77

               
               
               Conread position:234-664
               
               
               Cow position:chr27:28932053-28931605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 296

               
               
               Conread position:234-668
               
               
               Cow position:chr27:1637176-1636755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 18

               
               
               Conread position:234-670
               
               
               Cow position:chr27:20637309-20636892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:278
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):203, 83

               
               
               Conread position:234-670
               
               
               Cow position:chr27:22547640-22547216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 94

               
               
               Conread position:234-670
               
               
               Cow position:chr27:30814165-30814593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:294
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):13, 59

               
               
               Conread position:234-671
               
               
               Cow position:chr27:22439886-22440329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 122

               
               
               Conread position:234-671
               
               
               Cow position:chr27:24331464-24331915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 13

               
               
               Conread position:234-673
               
               
               Cow position:chr27:10307553-10307104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 19

               
               
               Conread position:234-673
               
               
               Cow position:chr27:12515944-12516390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 18

               
               
               Conread position:234-673
               
               
               Cow position:chr27:21978393-21977946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 15

               
               
               Conread position:234-683
               
               
               Cow position:chr27:16705001-16705450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 80

               
               
               Conread position:235-422
               
               
               Cow position:chr27:24035528-24035338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:235-426
               
               
               Cow position:chr27:28015984-28015791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):91, 18

               
               
               Conread position:235-450
               
               
               Cow position:chr27:23477693-23477910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):14, 103

               
               
               Conread position:235-456
               
               
               Cow position:chr27:13204214-13204432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):8, 86

               
               
               Conread position:235-469
               
               
               Cow position:chr27:10323595-10323823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):91, 20

               
               
               Conread position:235-476
               
               
               Cow position:chr27:13255042-13254802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):178, 17

               
               
               Conread position:235-592
               
               
               Cow position:chr27:20045647-20046000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):93, 18

               
               
               Conread position:235-605
               
               
               Cow position:chr27:16103560-16103931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 134

               
               
               Conread position:235-613
               
               
               Cow position:chr27:5744606-5745000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:255
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):54, 14

               
               
               Conread position:235-629
               
               
               Cow position:chr27:28467718-28467291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:280
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):84, 18

               
               
               Conread position:235-667
               
               
               Cow position:chr27:31373221-31372794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 17

               
               
               Conread position:235-672
               
               
               Cow position:chr27:27856088-27856524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 33

               
               
               Conread position:235-672
               
               
               Cow position:chr27:30764783-30765222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 140

               
               
               Conread position:235-673
               
               
               Cow position:chr27:815085-815556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 14

               
               
               Conread position:235-673
               
               
               Cow position:chr27:6550209-6550642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 19

               
               
               Conread position:235-673
               
               
               Cow position:chr27:24446389-24445965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 95

               
               
               Conread position:235-673
               
               
               Cow position:chr27:28002052-28001627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 17

               
               
               Conread position:235-674
               
               
               Cow position:chr27:28518047-28518478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 17

               
               
               Conread position:236-402
               
               
               Cow position:chr27:19779629-19779794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):90, 17

               
               
               Conread position:236-415
               
               
               Cow position:chr27:10581284-10581464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):7, 95

               
               
               Conread position:236-469
               
               
               Cow position:chr27:10598738-10598975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):90, 112

               
               
               Conread position:236-483
               
               
               Cow position:chr27:27055048-27055286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):158, 14

               
               
               Conread position:236-524
               
               
               Cow position:chr27:31386879-31386600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:213
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):182, 89

               
               
               Conread position:236-539
               
               
               Cow position:chr27:31151135-31151434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):182, 25

               
               
               Conread position:236-643
               
               
               Cow position:chr27:19669053-19668627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:282
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):90, 16

               
               
               Conread position:236-671
               
               
               Cow position:chr27:17397701-17397257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 85

               
               
               Conread position:236-673
               
               
               Cow position:chr27:20828953-20828516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:306
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):182, 37

               
               
               Conread position:236-673
               
               
               Cow position:chr27:22180016-22179606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:293
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):7, 50

               
               
               Conread position:236-673
               
               
               Cow position:chr27:27554928-27554495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:296
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):81, 22

               
               
               Conread position:237-380
               
               
               Cow position:chr27:23527746-23527606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:237-405
               
               
               Cow position:chr27:18873805-18873968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:237-421
               
               
               Cow position:chr27:16246560-16246737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:237-422
               
               
               Cow position:chr27:20048389-20048572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):178, 83

               
               
               Conread position:237-463
               
               
               Cow position:chr27:15003227-15002998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):97, 199

               
               
               Conread position:237-529
               
               
               Cow position:chr27:5553224-5553511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):94, 36

               
               
               Conread position:237-600
               
               
               Cow position:chr27:29185092-29184717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):91, 15

               
               
               Conread position:237-671
               
               
               Cow position:chr27:15315276-15315683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 15

               
               
               Conread position:237-673
               
               
               Cow position:chr27:18543740-18544189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:298
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):91, 110

               
               
               Conread position:237-673
               
               
               Cow position:chr27:24228053-24227602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:303
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):10, 96

               
               
               Conread position:237-673
               
               
               Cow position:chr27:30407295-30406840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 118

               
               
               Conread position:237-674
               
               
               Cow position:chr27:2592289-2592734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 48

               
               
               Conread position:237-675
               
               
               Cow position:chr27:18558111-18558557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 15

               
               
               Conread position:238-387
               
               
               Cow position:chr27:4487026-4486875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):86, 15

               
               
               Conread position:238-413
               
               
               Cow position:chr27:27450129-27449957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:238-417
               
               
               Cow position:chr27:20484487-20484662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:238-422
               
               
               Cow position:chr27:29249340-29249530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):60, 15

               
               
               Conread position:238-425
               
               
               Cow position:chr27:1184422-1184236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):11, 33

               
               
               Conread position:238-426
               
               
               Cow position:chr27:31498538-31498723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):88, 12

               
               
               Conread position:238-431
               
               
               Cow position:chr27:11133841-11134035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):180, 96

               
               
               Conread position:238-446
               
               
               Cow position:chr27:24223707-24223915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):5, 40

               
               
               Conread position:238-466
               
               
               Cow position:chr27:10404364-10404133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):88, 123

               
               
               Conread position:238-468
               
               
               Cow position:chr27:26794030-26793798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):89, 15

               
               
               Conread position:238-492
               
               
               Cow position:chr27:11982894-11982638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):88, 14

               
               
               Conread position:238-535
               
               
               Cow position:chr27:16965328-16965626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:218
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):71, 185

               
               
               Conread position:238-539
               
               
               Cow position:chr27:20514578-20514878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 36

               
               
               Conread position:238-605
               
               
               Cow position:chr27:27438754-27438377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:266
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):80, 14

               
               
               Conread position:238-670
               
               
               Cow position:chr27:11435573-11435141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 9

               
               
               Conread position:238-670
               
               
               Cow position:chr27:26509402-26508969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 15

               
               
               Conread position:238-672
               
               
               Cow position:chr27:4390503-4390064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:289
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):93, 14

               
               
               Conread position:238-673
               
               
               Cow position:chr27:15867146-15867582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 72

               
               
               Conread position:238-673
               
               
               Cow position:chr27:19496633-19497066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:276
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):88, 14

               
               
               Conread position:238-674
               
               
               Cow position:chr27:27558753-27558337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:292
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):10, 149

               
               
               Conread position:238-675
               
               
               Cow position:chr27:20869930-20869507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:292
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):7, 235

               
               
               Conread position:238-675
               
               
               Cow position:chr27:28922141-28921703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 14

               
               
               Conread position:239-402
               
               
               Cow position:chr27:21660890-21661053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:239-414
               
               
               Cow position:chr27:22748082-22748257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:239-414
               
               
               Cow position:chr27:31183327-31183505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):87, 14

               
               
               Conread position:239-426
               
               
               Cow position:chr27:26400963-26400780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):185, 68

               
               
               Conread position:239-441
               
               
               Cow position:chr27:29614796-29615000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):168, 196

               
               
               Conread position:239-450
               
               
               Cow position:chr27:19452755-19452969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):78, 10

               
               
               Conread position:239-466
               
               
               Cow position:chr27:31170318-31170081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):80, 128

               
               
               Conread position:239-478
               
               
               Cow position:chr27:24303697-24303940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):84, 31

               
               
               Conread position:239-480
               
               
               Cow position:chr27:24495534-24495767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):38, 47

               
               
               Conread position:239-480
               
               
               Cow position:chr27:31169351-31169113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):175, 71

               
               
               Conread position:239-494
               
               
               Cow position:chr27:26437366-26437106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):177, 94

               
               
               Conread position:239-514
               
               
               Cow position:chr27:19932820-19933097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):87, 183

               
               
               Conread position:239-529
               
               
               Cow position:chr27:26852828-26852546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:203
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):80, 153

               
               
               Conread position:239-556
               
               
               Cow position:chr27:6924836-6925167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:233
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):87, 189

               
               
               Conread position:239-634
               
               
               Cow position:chr27:22513927-22513522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:265
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):94, 125

               
               
               Conread position:239-663
               
               
               Cow position:chr27:29431229-29431637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 72

               
               
               Conread position:239-670
               
               
               Cow position:chr27:13875487-13875924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 125

               
               
               Conread position:239-672
               
               
               Cow position:chr27:8062597-8062166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 46

               
               
               Conread position:239-673
               
               
               Cow position:chr27:20354354-20354771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 126

               
               
               Conread position:239-675
               
               
               Cow position:chr27:17472568-17473006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 49

               
               
               Conread position:239-675
               
               
               Cow position:chr27:27020341-27019907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 41

               
               
               Conread position:239-675
               
               
               Cow position:chr27:30914760-30915195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 46

               
               
               Conread position:240-392
               
               
               Cow position:chr27:21101537-21101383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):55, 101

               
               
               Conread position:240-406
               
               
               Cow position:chr27:4195310-4195468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:240-410
               
               
               Cow position:chr27:11528684-11528856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:240-412
               
               
               Cow position:chr27:3498311-3498478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:240-413
               
               
               Cow position:chr27:31153799-31153629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):132, 12

               
               
               Conread position:240-416
               
               
               Cow position:chr27:27606539-27606365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:240-431
               
               
               Cow position:chr27:22267975-22268174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):67, 182

               
               
               Conread position:240-434
               
               
               Cow position:chr27:21951225-21951029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:240-441
               
               
               Cow position:chr27:19576568-19576365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):23, 98

               
               
               Conread position:240-450
               
               
               Cow position:chr27:6162648-6162443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):178, 83

               
               
               Conread position:240-455
               
               
               Cow position:chr27:20548565-20548783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):86, 196

               
               
               Conread position:240-460
               
               
               Cow position:chr27:15332534-15332318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):12, 95

               
               
               Conread position:240-465
               
               
               Cow position:chr27:29388427-29388653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):112, 88

               
               
               Conread position:240-467
               
               
               Cow position:chr27:6106462-6106684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:240-467
               
               
               Cow position:chr27:18435375-18435148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:176
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):175, 80

               
               
               Conread position:240-468
               
               
               Cow position:chr27:27058650-27058420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):69, 115

               
               
               Conread position:240-469
               
               
               Cow position:chr27:29319160-29319397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):26, 101

               
               
               Conread position:240-475
               
               
               Cow position:chr27:16512412-16512179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):176, 51

               
               
               Conread position:240-476
               
               
               Cow position:chr27:6241437-6241201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):86, 25

               
               
               Conread position:240-477
               
               
               Cow position:chr27:8790987-8790747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):78, 45

               
               
               Conread position:240-490
               
               
               Cow position:chr27:31248851-31248612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:240-502
               
               
               Cow position:chr27:11561530-11561796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):60, 27

               
               
               Conread position:240-517
               
               
               Cow position:chr27:23560274-23559995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 85

               
               
               Conread position:240-519
               
               
               Cow position:chr27:12425043-12425325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):86, 118

               
               
               Conread position:240-522
               
               
               Cow position:chr27:212706-213004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):79, 191

               
               
               Conread position:240-539
               
               
               Cow position:chr27:16088547-16088866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:239
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):67, 9

               
               
               Conread position:240-540
               
               
               Cow position:chr27:20584712-20584398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:224
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):59, 121

               
               
               Conread position:240-542
               
               
               Cow position:chr27:29164530-29164825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):91, 46

               
               
               Conread position:240-592
               
               
               Cow position:chr27:23545583-23545206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:253
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):42, 200

               
               
               Conread position:240-594
               
               
               Cow position:chr27:20101122-20101484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:238
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):86, 114

               
               
               Conread position:240-597
               
               
               Cow position:chr27:27442405-27442051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):101, 84

               
               
               Conread position:240-599
               
               
               Cow position:chr27:21990898-21991279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):78, 114

               
               
               Conread position:240-609
               
               
               Cow position:chr27:14343680-14343335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 44

               
               
               Conread position:240-628
               
               
               Cow position:chr27:7649835-7649436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:272
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):80, 12

               
               
               Conread position:240-629
               
               
               Cow position:chr27:7212975-7212565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:284
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):80, 211

               
               
               Conread position:240-630
               
               
               Cow position:chr27:16780615-16781013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:278
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):57, 25

               
               
               Conread position:240-630
               
               
               Cow position:chr27:27460823-27460423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 148

               
               
               Conread position:240-643
               
               
               Cow position:chr27:7346425-7346822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:269
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):50, 115

               
               
               Conread position:240-671
               
               
               Cow position:chr27:8962486-8962080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 34

               
               
               Conread position:240-671
               
               
               Cow position:chr27:28190436-28190028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):244, 73

               
               
               Conread position:240-671
               
               
               Cow position:chr27:28206559-28206987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):227, 84

               
               
               Conread position:240-672
               
               
               Cow position:chr27:1353337-1353775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 16

               
               
               Conread position:240-672
               
               
               Cow position:chr27:27204682-27204237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:300
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):68, 210

               
               
               Conread position:240-672
               
               
               Cow position:chr27:30868996-30868549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 206

               
               
               Conread position:240-673
               
               
               Cow position:chr27:2957172-2957599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 80

               
               
               Conread position:240-673
               
               
               Cow position:chr27:8630118-8629683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 57

               
               
               Conread position:240-673
               
               
               Cow position:chr27:19589238-19589670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 33

               
               
               Conread position:240-673
               
               
               Cow position:chr27:20283399-20283823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 70

               
               
               Conread position:240-673
               
               
               Cow position:chr27:21669352-21668934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:291
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):53, 21

               
               
               Conread position:240-673
               
               
               Cow position:chr27:23128221-23128646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:299
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):78, 9

               
               
               Conread position:240-673
               
               
               Cow position:chr27:26643458-26643864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:302
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):290, 36

               
               
               Conread position:240-673
               
               
               Cow position:chr27:29798707-29799135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:278
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):86, 114

               
               
               Conread position:240-674
               
               
               Cow position:chr27:15669019-15668574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 197

               
               
               Conread position:240-674
               
               
               Cow position:chr27:22330903-22330477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):244, 70

               
               
               Conread position:240-674
               
               
               Cow position:chr27:25809761-25809330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 174

               
               
               Conread position:240-675
               
               
               Cow position:chr27:15870915-15871355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:299
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):100, 14

               
               
               Conread position:240-697
               
               
               Cow position:chr27:7412149-7412597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 94

               
               
               Conread position:241-385
               
               
               Cow position:chr27:24952196-24952054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:241-412
               
               
               Cow position:chr27:26939834-26940006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):95, 78

               
               
               Conread position:241-434
               
               
               Cow position:chr27:12284750-12284946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):50, 91

               
               
               Conread position:241-465
               
               
               Cow position:chr27:7343671-7343446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):89, 9

               
               
               Conread position:241-467
               
               
               Cow position:chr27:27740536-27740307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):85, 11

               
               
               Conread position:241-469
               
               
               Cow position:chr27:26121513-26121746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):9, 197

               
               
               Conread position:241-474
               
               
               Cow position:chr27:6319679-6319910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):173, 69

               
               
               Conread position:241-481
               
               
               Cow position:chr27:31210306-31210544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):173, 93

               
               
               Conread position:241-496
               
               
               Cow position:chr27:23147921-23148179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):54, 11

               
               
               Conread position:241-579
               
               
               Cow position:chr27:26087076-26087397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:250
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):287, 32

               
               
               Conread position:241-605
               
               
               Cow position:chr27:19500480-19500105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):85, 113

               
               
               Conread position:241-625
               
               
               Cow position:chr27:426726-427116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 167

               
               
               Conread position:241-673
               
               
               Cow position:chr27:7971317-7971761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:292
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):85, 65

               
               
               Conread position:241-673
               
               
               Cow position:chr27:23452220-23452671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:315
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):172, 8

               
               
               Conread position:241-673
               
               
               Cow position:chr27:30890058-30890478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 11

               
               
               Conread position:241-674
               
               
               Cow position:chr27:29494142-29493724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:291
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):177, 56

               
               
               Conread position:241-675
               
               
               Cow position:chr27:10979615-10980057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 44

               
               
               Conread position:241-682
               
               
               Cow position:chr27:6787708-6788160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:296
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):40, 101

               
               
               Conread position:241-687
               
               
               Cow position:chr27:14670624-14670173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 45

               
               
               Conread position:242-417
               
               
               Cow position:chr27:26980208-26980030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:242-482
               
               
               Cow position:chr27:20485802-20486057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):67, 144

               
               
               Conread position:242-503
               
               
               Cow position:chr27:591011-590739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):77, 11

               
               
               Conread position:242-518
               
               
               Cow position:chr27:26853594-26853321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):165, 43

               
               
               Conread position:242-524
               
               
               Cow position:chr27:13940794-13940517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):5, 38

               
               
               Conread position:242-584
               
               
               Cow position:chr27:23594076-23594422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 160

               
               
               Conread position:242-591
               
               
               Cow position:chr27:2644341-2643979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):84, 249

               
               
               Conread position:242-606
               
               
               Cow position:chr27:26999666-26999291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:252
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):70, 107

               
               
               Conread position:242-626
               
               
               Cow position:chr27:26481440-26481073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:274
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):58, 146

               
               
               Conread position:242-667
               
               
               Cow position:chr27:8353252-8353662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 45

               
               
               Conread position:242-672
               
               
               Cow position:chr27:15453970-15454402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 34

               
               
               Conread position:242-673
               
               
               Cow position:chr27:22171059-22171489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 65

               
               
               Conread position:242-673
               
               
               Cow position:chr27:27389270-27388837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 290

               
               
               Conread position:242-675
               
               
               Cow position:chr27:22035614-22035180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 78

               
               
               Conread position:243-412
               
               
               Cow position:chr27:29183468-29183289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):57, 42

               
               
               Conread position:243-412
               
               
               Cow position:chr27:30884786-30884955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):16, 33

               
               
               Conread position:243-421
               
               
               Cow position:chr27:20325115-20325288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):175, 70

               
               
               Conread position:243-423
               
               
               Cow position:chr27:23232670-23232854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):83, 116

               
               
               Conread position:243-479
               
               
               Cow position:chr27:29597987-29597756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):91, 63

               
               
               Conread position:243-496
               
               
               Cow position:chr27:20897262-20897009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):225, 91

               
               
               Conread position:243-539
               
               
               Cow position:chr27:26112160-26111852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 300

               
               
               Conread position:243-574
               
               
               Cow position:chr27:23735727-23736058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):78, 42

               
               
               Conread position:243-582
               
               
               Cow position:chr27:22386646-22386974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):170, 88

               
               
               Conread position:243-669
               
               
               Cow position:chr27:19717656-19718111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 205

               
               
               Conread position:245-445
               
               
               Cow position:chr27:17102660-17102858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):170, 67

               
               
               Conread position:245-452
               
               
               Cow position:chr27:7425428-7425219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):172, 186

               
               
               Conread position:245-543
               
               
               Cow position:chr27:29593868-29593568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):79, 28

               
               
               Conread position:245-632
               
               
               Cow position:chr27:3306546-3306924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 40

               
               
               Conread position:245-671
               
               
               Cow position:chr27:19546761-19546312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:308
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):73, 179

               
               
               Conread position:245-673
               
               
               Cow position:chr27:16284249-16284664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 61

               
               
               Conread position:246-422
               
               
               Cow position:chr27:20324900-20325082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:246-539
               
               
               Cow position:chr27:18646388-18646089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):170, 87

               
               
               Conread position:246-539
               
               
               Cow position:chr27:26013599-26013317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):173, 7

               
               
               Conread position:246-671
               
               
               Cow position:chr27:12596543-12596948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 76

               
               
               Conread position:246-673
               
               
               Cow position:chr27:27632832-27632418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 49

               
               
               Conread position:248-422
               
               
               Cow position:chr27:26909825-26909653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):171, 76

               
               
               Conread position:249-482
               
               
               Cow position:chr27:26323206-26323443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):66, 193

               
               
               Conread position:249-528
               
               
               Cow position:chr27:23484980-23485258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):156, 27

               
               
               Conread position:249-539
               
               
               Cow position:chr27:22489037-22489335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):74, 5

               
               
               Conread position:249-604
               
               
               Cow position:chr27:15378717-15378353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:260
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):58, 24

               
               
               Conread position:249-605
               
               
               Cow position:chr27:7731510-7731121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:263
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):70, 296

               
               
               Conread position:249-662
               
               
               Cow position:chr27:19387785-19388199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 27

               
               
               Conread position:249-674
               
               
               Cow position:chr27:26865344-26864926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):235, 79

               
               
               Conread position:250-539
               
               
               Cow position:chr27:28260769-28260482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):41, 17

               
               
               Conread position:250-574
               
               
               Cow position:chr27:22560061-22559725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:239
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):70, 45

               
               
               Conread position:250-590
               
               
               Cow position:chr27:26226523-26226178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 78

               
               
               Conread position:250-605
               
               
               Cow position:chr27:8168656-8168302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:254
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):175, 24

               
               
               Conread position:250-652
               
               
               Cow position:chr27:15409260-15408873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 60

               
               
               Conread position:251-456
               
               
               Cow position:chr27:29160218-29160013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):80, 167

               
               
               Conread position:251-558
               
               
               Cow position:chr27:15865376-15865686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):168, 73

               
               
               Conread position:251-675
               
               
               Cow position:chr27:26428362-26427935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 34

               
               
               Conread position:252-414
               
               
               Cow position:chr27:30444907-30444751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:252-662
               
               
               Cow position:chr27:29831941-29831506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 189

               
               
               Conread position:253-521
               
               
               Cow position:chr27:12459056-12459320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):54, 82

               
               
               Conread position:253-673
               
               
               Cow position:chr27:7959063-7958644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:295
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):54, 101

               
               
               Conread position:253-674
               
               
               Cow position:chr27:31231311-31230901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 75

               
               
               Conread position:254-387
               
               
               Cow position:chr27:22150924-22150792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:254-420
               
               
               Cow position:chr27:23177543-23177377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):91, 103

               
               
               Conread position:254-435
               
               
               Cow position:chr27:30997060-30996877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):72, 31

               
               
               Conread position:254-534
               
               
               Cow position:chr27:23859932-23860221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:215
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):74, 112

               
               
               Conread position:254-671
               
               
               Cow position:chr27:19660697-19661131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 181

               
               
               Conread position:254-673
               
               
               Cow position:chr27:23554560-23554128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 98

               
               
               Conread position:254-674
               
               
               Cow position:chr27:26424807-26424394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 71

               
               
               Conread position:257-426
               
               
               Cow position:chr27:26314353-26314182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):62, 75

               
               
               Conread position:257-517
               
               
               Cow position:chr27:10653454-10653721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):44, 28

               
               
               Conread position:257-540
               
               
               Cow position:chr27:23108130-23107843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):53, 159

               
               
               Conread position:257-576
               
               
               Cow position:chr27:26188599-26188919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):62, 80

               
               
               Conread position:257-609
               
               
               Cow position:chr27:27695003-27694642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):55, 85

               
               
               Conread position:257-673
               
               
               Cow position:chr27:19685938-19685523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 25

               
               
               Conread position:258-647
               
               
               Cow position:chr27:23890706-23891104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 171

               
               
               Conread position:258-684
               
               
               Cow position:chr27:435005-435439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:292
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):117, 67

               
               
               Conread position:259-587
               
               
               Cow position:chr27:29380635-29380967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):102, 26

               
               
               Conread position:259-673
               
               
               Cow position:chr27:1768843-1768444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 15

               
               
               Conread position:259-673
               
               
               Cow position:chr27:26238798-26239215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 96

               
               
               Conread position:259-673
               
               
               Cow position:chr27:27003485-27003090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:283
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):67, 26

               
               
               Conread position:260-435
               
               
               Cow position:chr27:23060341-23060163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:260-640
               
               
               Cow position:chr27:22735819-22735443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:262
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):73, 98

               
               
               Conread position:260-673
               
               
               Cow position:chr27:7935383-7934972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 182

               
               
               Conread position:262-528
               
               
               Cow position:chr27:29613714-29613442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):57, 92

               
               
               Conread position:264-468
               
               
               Cow position:chr27:24709333-24709538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):64, 163

               
               
               Conread position:264-482
               
               
               Cow position:chr27:28478363-28478579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):154, 52

               
               
               Conread position:264-649
               
               
               Cow position:chr27:15642957-15643343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 22

               
               
               Conread position:264-673
               
               
               Cow position:chr27:20068196-20067787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 142

               
               
               Conread position:267-673
               
               
               Cow position:chr27:15925124-15925526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:275
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):57, 172

               
               
               Conread position:274-675
               
               
               Cow position:chr27:28164612-28164218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):267, 219

               
               
               Conread position:278-481
               
               
               Cow position:chr27:22422058-22421853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):136, 157

               
               
               Conread position:284-673
               
               
               Cow position:chr27:23483020-23483414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 136

               
               
               Conread position:285-674
               
               
               Cow position:chr27:15866019-15866416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 153

               
               
               Conread position:287-593
               
               
               Cow position:chr27:30261093-30260780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):41, 187

               
               
               Conread position:287-667
               
               
               Cow position:chr27:22418962-22418579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 33

               
               
               Conread position:288-517
               
               
               Cow position:chr27:14303541-14303769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):12, 35

               
               
               Conread position:289-504
               
               
               Cow position:chr27:30846461-30846681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):13, 147

               
               
               Conread position:294-673
               
               
               Cow position:chr27:26959805-26959429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 40

               
               
               Conread position:302-584
               
               
               Cow position:chr27:12191662-12191383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):14, 32

               
               
               Conread position:303-691
               
               
               Cow position:chr27:4835784-4835397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 11

               
               
               Conread position:305-525
               
               
               Cow position:chr27:20812728-20812954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):110, 22

               
               
               Conread position:306-528
               
               
               Cow position:chr27:7973996-7974219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):24, 45

               
               
               Conread position:308-674
               
               
               Cow position:chr27:27641186-27640799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 25

               
               
               Conread position:310-468
               
               
               Cow position:chr27:6674107-6674265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):108, 23

               
               
               Conread position:310-471
               
               
               Cow position:chr27:30489584-30489422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):105, 23

               
               
               Conread position:310-492
               
               
               Cow position:chr27:1789312-1789126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):102, 23

               
               
               Conread position:310-495
               
               
               Cow position:chr27:22348316-22348500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):101, 23

               
               
               Conread position:310-521
               
               
               Cow position:chr27:17918489-17918276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):16, 110

               
               
               Conread position:310-535
               
               
               Cow position:chr27:6302641-6302410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):105, 24

               
               
               Conread position:310-539
               
               
               Cow position:chr27:4155822-4156059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):8, 46

               
               
               Conread position:310-668
               
               
               Cow position:chr27:20758205-20757869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:258
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):16, 56

               
               
               Conread position:310-673
               
               
               Cow position:chr27:30988624-30988989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 23

               
               
               Conread position:310-674
               
               
               Cow position:chr27:27684284-27683924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):170, 14

               
               
               Conread position:310-691
               
               
               Cow position:chr27:20795619-20795994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 23

               
               
               Conread position:311-638
               
               
               Cow position:chr27:20517491-20517817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):102, 22

               
               
               Conread position:312-522
               
               
               Cow position:chr27:17646338-17646127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):104, 22

               
               
               Conread position:312-595
               
               
               Cow position:chr27:26920082-26919785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:211
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):107, 12

               
               
               Conread position:312-674
               
               
               Cow position:chr27:27136692-27136332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:257
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):106, 34

               
               
               Conread position:313-478
               
               
               Cow position:chr27:27673186-27673022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):120, 21

               
               
               Conread position:313-516
               
               
               Cow position:chr27:18923003-18922796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):106, 20

               
               
               Conread position:313-539
               
               
               Cow position:chr27:15215056-15215290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):22, 130

               
               
               Conread position:313-590
               
               
               Cow position:chr27:24371072-24371347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):115, 14

               
               
               Conread position:313-669
               
               
               Cow position:chr27:1291021-1290676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):102, 31

               
               
               Conread position:313-671
               
               
               Cow position:chr27:30359236-30359584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 20

               
               
               Conread position:313-672
               
               
               Cow position:chr27:20037286-20036938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 48

               
               
               Conread position:313-673
               
               
               Cow position:chr27:4386234-4385875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 119

               
               
               Conread position:313-673
               
               
               Cow position:chr27:23882538-23882183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 20

               
               
               Conread position:313-674
               
               
               Cow position:chr27:25276971-25277329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 122

               
               
               Conread position:313-675
               
               
               Cow position:chr27:26807735-26807370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:255
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):103, 21

               
               
               Conread position:314-589
               
               
               Cow position:chr27:31148592-31148871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 19

               
               
               Conread position:314-640
               
               
               Cow position:chr27:27270715-27270379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:241
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):17, 138

               
               
               Conread position:314-670
               
               
               Cow position:chr27:27064609-27064251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 23

               
               
               Conread position:315-671
               
               
               Cow position:chr27:4672843-4673210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 19

               
               
               Conread position:315-672
               
               
               Cow position:chr27:8942858-8942493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:252
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):103, 19

               
               
               Conread position:317-552
               
               
               Cow position:chr27:20247972-20247733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):167, 102

               
               
               Conread position:317-673
               
               
               Cow position:chr27:25411675-25411328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:260
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):155, 19

               
               
               Conread position:317-673
               
               
               Cow position:chr27:27844170-27843801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 7

               
               
               Conread position:318-673
               
               
               Cow position:chr27:536298-536648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):101, 18

               
               
               Conread position:321-598
               
               
               Cow position:chr27:20901398-20901682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):68, 12

               
               
               Conread position:321-673
               
               
               Cow position:chr27:20549875-20549501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:255
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):76, 113

               
               
               Conread position:322-539
               
               
               Cow position:chr27:31017987-31017777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):90, 12

               
               
               Conread position:322-673
               
               
               Cow position:chr27:26413416-26413064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 11

               
               
               Conread position:323-477
               
               
               Cow position:chr27:23942986-23943140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):90, 10

               
               
               Conread position:323-598
               
               
               Cow position:chr27:30389459-30389176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):107, 59

               
               
               Conread position:327-675
               
               
               Cow position:chr27:29039099-29038746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):88, 96

               
               
               Conread position:328-595
               
               
               Cow position:chr27:674187-673926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):199, 96

               
               
               Conread position:328-645
               
               
               Cow position:chr27:28271307-28270982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):90, 107

               
               
               Conread position:330-528
               
               
               Cow position:chr27:22225747-22225550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):154, 98

               
               
               Conread position:330-592
               
               
               Cow position:chr27:28245648-28245915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):72, 106

               
               
               Conread position:331-673
               
               
               Cow position:chr27:20553578-20553908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:244
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):83, 104

               
               
               Conread position:332-673
               
               
               Cow position:chr27:16478489-16478157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):150, 70

               
               
               Conread position:333-582
               
               
               Cow position:chr27:20497054-20497318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):79, 104

               
               
               Conread position:333-592
               
               
               Cow position:chr27:21213636-21213885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):81, 102

               
               
               Conread position:337-465
               
               
               Cow position:chr27:13376393-13376266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:97
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:337-539
               
               
               Cow position:chr27:26407307-26407108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):137, 94

               
               
               Conread position:337-625
               
               
               Cow position:chr27:1122884-1123178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 96

               
               
               Conread position:337-670
               
               
               Cow position:chr27:30354492-30354155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 98

               
               
               Conread position:337-671
               
               
               Cow position:chr27:18593125-18593460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 76

               
               
               Conread position:337-672
               
               
               Cow position:chr27:26150870-26151210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):77, 97

               
               
               Conread position:337-673
               
               
               Cow position:chr27:1498167-1498505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 51

               
               
               Conread position:338-674
               
               
               Cow position:chr27:24014886-24014548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 97

               
               
               Conread position:340-605
               
               
               Cow position:chr27:715357-715630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:205
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):77, 9

               
               
               Conread position:347-594
               
               
               Cow position:chr27:8405960-8405720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):71, 84

               
               
               Conread position:347-676
               
               
               Cow position:chr27:4806039-4805713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 67

               
               
               Conread position:348-674
               
               
               Cow position:chr27:4813020-4812684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 83

               
               
               Conread position:354-561
               
               
               Cow position:chr27:21975922-21976127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):66, 84

               
               
               Conread position:354-592
               
               
               Cow position:chr27:16625769-16626010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):130, 81

               
               
               Conread position:364-674
               
               
               Cow position:chr27:706832-707140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 30

               
               
               Conread position:367-675
               
               
               Cow position:chr27:11296152-11296451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):52, 68

               
               
               Conread position:367-682
               
               
               Cow position:chr27:20918773-20919089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:216
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):61, 52

               
               
               Conread position:368-684
               
               
               Cow position:chr27:11536222-11535894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:231
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:370-673
               
               
               Cow position:chr27:25379873-25380182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 70

               
               
               Conread position:372-661
               
               
               Cow position:chr27:3784-4067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 65

               
               
               Conread position:373-675
               
               
               Cow position:chr27:1902958-1903257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):41, 21

               
               
               Conread position:375-673
               
               
               Cow position:chr27:24999850-24999543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:221
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):48, 44

               
               
               Conread position:382-674
               
               
               Cow position:chr27:21351124-21350823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:219
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):47, 21

               
               
               Conread position:404-673
               
               
               Cow position:chr27:2683226-2682952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):15, 123

               
               
               Conread position:404-673
               
               
               Cow position:chr27:30362170-30362434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):80, 9

               
               
               Conread position:408-669
               
               
               Cow position:chr27:11412651-11412907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):11, 57

               
               
               Conread position:415-605
               
               
               Cow position:chr27:7538146-7537949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):20, 10

               
               
               Conread position:415-675
               
               
               Cow position:chr27:27040533-27040802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):15, 10

               
               
               Conread position:417-602
               
               
               Cow position:chr27:20570054-20570246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):18, 9

               
               
               Conread position:417-630
               
               
               Cow position:chr27:154298-154517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):54, 14

               
               
               Conread position:417-670
               
               
               Cow position:chr27:29283473-29283220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:194
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):68, 19

               
               
               Conread position:417-673
               
               
               Cow position:chr27:6522979-6523237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):110, 18

               
               
               Conread position:417-673
               
               
               Cow position:chr27:14902718-14902457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 19

               
               
               Conread position:417-673
               
               
               Cow position:chr27:21569905-21569652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):123, 19

               
               
               Conread position:418-674
               
               
               Cow position:chr27:27259550-27259801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):112, 17

               
               
               Conread position:420-684
               
               
               Cow position:chr27:6058441-6058705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):94, 60

               
               
               Conread position:434-605
               
               
               Cow position:chr27:4011630-4011806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):93, 49

               
               
               Conread position:434-650
               
               
               Cow position:chr27:22268452-22268673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):52, 35

               
               
               Conread position:434-671
               
               
               Cow position:chr27:25790755-25790993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):34, 47

               
               
               Conread position:435-670
               
               
               Cow position:chr27:16871964-16871727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):37, 89

               
               
               Conread position:435-670
               
               
               Cow position:chr27:27141554-27141782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):33, 38

               
               
               Conread position:436-606
               
               
               Cow position:chr27:10395306-10395133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):50, 15

               
               
               Conread position:436-671
               
               
               Cow position:chr27:31147716-31147484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):48, 30

               
               
               Conread position:436-674
               
               
               Cow position:chr27:26398305-26398066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):32, 84

               
               
               Conread position:439-593
               
               
               Cow position:chr27:16237865-16238020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):25, 48

               
               
               Conread position:448-675
               
               
               Cow position:chr27:20591945-20592177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):35, 11

               
               
               Conread position:451-664
               
               
               Cow position:chr27:27550773-27550565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):76, 68

               
               
               Conread position:463-671
               
               
               Cow position:chr27:23455171-23454953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):60, 18

               
               
               Conread position:483-654
               
               
               Cow position:chr27:18434469-18434298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):71, 40

               
               
               Conread position:483-673
               
               
               Cow position:chr27:22498558-22498744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):44, 37

               
               
               Conread position:485-675
               
               
               Cow position:chr27:22771754-22771951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:485-686
               
               
               Cow position:chr27:16619991-16620196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):42, 35

               
               
               Conread position:495-673
               
               
               Cow position:chr27:1884054-1884229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):160, 114

               
               
               Conread position:159-473
               
               
               Cow position:chr28:20406312-20406007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):256, 46

               
               
               Conread position:162-421
               
               
               Cow position:chr28:2777815-2777554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):33, 23

               
               
               Conread position:227-477
               
               
               Cow position:chr28:4186121-4185871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):191, 26

               
               
               Conread position:228-510
               
               
               Cow position:chr28:4013301-4013020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 100

               
               
               Conread position:229-468
               
               
               Cow position:chr28:7964461-7964692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):99, 119

               
               
               Conread position:230-672
               
               
               Cow position:chr28:22500290-22500711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 57

               
               
               Conread position:231-665
               
               
               Cow position:chr28:18625453-18625001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 67

               
               
               Conread position:231-674
               
               
               Cow position:chr28:13474518-13474075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 110

               
               
               Conread position:231-675
               
               
               Cow position:chr28:26340550-26340105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:295
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):9, 242

               
               
               Conread position:234-392
               
               
               Cow position:chr28:24238271-24238423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):9, 74

               
               
               Conread position:234-393
               
               
               Cow position:chr28:3257203-3257041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:234-402
               
               
               Cow position:chr28:4866364-4866529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):10, 78

               
               
               Conread position:234-416
               
               
               Cow position:chr28:10763100-10762925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:234-416
               
               
               Cow position:chr28:16856894-16857077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:234-422
               
               
               Cow position:chr28:3423989-3423800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):181, 0

               
               
               Conread position:234-422
               
               
               Cow position:chr28:22085334-22085519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):181, 18

               
               
               Conread position:234-427
               
               
               Cow position:chr28:3137767-3137562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):9, 202

               
               
               Conread position:234-431
               
               
               Cow position:chr28:8716169-8716373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):92, 18

               
               
               Conread position:234-436
               
               
               Cow position:chr28:10252703-10252906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):85, 187

               
               
               Conread position:234-448
               
               
               Cow position:chr28:30902332-30902122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):66, 15

               
               
               Conread position:234-463
               
               
               Cow position:chr28:11016615-11016389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):165, 15

               
               
               Conread position:234-467
               
               
               Cow position:chr28:4937027-4937265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):66, 51

               
               
               Conread position:234-490
               
               
               Cow position:chr28:5236086-5235835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):184, 114

               
               
               Conread position:234-521
               
               
               Cow position:chr28:11348639-11348352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):9, 96

               
               
               Conread position:234-521
               
               
               Cow position:chr28:11814867-11815156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):107, 90

               
               
               Conread position:234-526
               
               
               Cow position:chr28:5138787-5139078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):180, 75

               
               
               Conread position:234-535
               
               
               Cow position:chr28:12933525-12933822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):183, 13

               
               
               Conread position:234-539
               
               
               Cow position:chr28:3011055-3011368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 164

               
               
               Conread position:234-566
               
               
               Cow position:chr28:12672250-12672587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:229
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):79, 15

               
               
               Conread position:234-567
               
               
               Cow position:chr28:11346277-11346612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 90

               
               
               Conread position:234-578
               
               
               Cow position:chr28:19262373-19262727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:252
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):75, 18

               
               
               Conread position:234-580
               
               
               Cow position:chr28:27161103-27161470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 113

               
               
               Conread position:234-603
               
               
               Cow position:chr28:2960604-2960995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:267
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):52, 216

               
               
               Conread position:234-605
               
               
               Cow position:chr28:13527411-13527038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:256
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):13, 40

               
               
               Conread position:234-605
               
               
               Cow position:chr28:29988895-29989278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 114

               
               
               Conread position:234-611
               
               
               Cow position:chr28:11762910-11762530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:250
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):92, 124

               
               
               Conread position:234-634
               
               
               Cow position:chr28:26982523-26982937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 253

               
               
               Conread position:234-652
               
               
               Cow position:chr28:29416513-29416925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 75

               
               
               Conread position:234-667
               
               
               Cow position:chr28:4016737-4016306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 41

               
               
               Conread position:234-671
               
               
               Cow position:chr28:33884615-33884182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 103

               
               
               Conread position:234-673
               
               
               Cow position:chr28:9285166-9285607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 15

               
               
               Conread position:234-673
               
               
               Cow position:chr28:34230442-34230000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 19

               
               
               Conread position:234-674
               
               
               Cow position:chr28:21868669-21868221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 196

               
               
               Conread position:234-675
               
               
               Cow position:chr28:3023705-3024143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 15

               
               
               Conread position:234-675
               
               
               Cow position:chr28:3746408-3745970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 15

               
               
               Conread position:234-686
               
               
               Cow position:chr28:11426335-11426788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 77

               
               
               Conread position:235-392
               
               
               Cow position:chr28:21263366-21263211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):9, 87

               
               
               Conread position:235-405
               
               
               Cow position:chr28:2435828-2435991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:235-411
               
               
               Cow position:chr28:11305424-11305598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):8, 15

               
               
               Conread position:235-417
               
               
               Cow position:chr28:4027258-4027433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:235-456
               
               
               Cow position:chr28:29850612-29850827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):38, 14

               
               
               Conread position:235-466
               
               
               Cow position:chr28:24646793-24646571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):182, 15

               
               
               Conread position:235-471
               
               
               Cow position:chr28:5205463-5205244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):8, 42

               
               
               Conread position:235-481
               
               
               Cow position:chr28:17948905-17949150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):8, 78

               
               
               Conread position:235-485
               
               
               Cow position:chr28:6975444-6975200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):179, 18

               
               
               Conread position:235-522
               
               
               Cow position:chr28:7618948-7619231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:215
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):8, 52

               
               
               Conread position:235-528
               
               
               Cow position:chr28:7350862-7350574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 36

               
               
               Conread position:235-542
               
               
               Cow position:chr28:23579112-23578802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):91, 17

               
               
               Conread position:235-558
               
               
               Cow position:chr28:31223346-31223679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:239
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):91, 193

               
               
               Conread position:235-637
               
               
               Cow position:chr28:10669798-10669381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:282
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):90, 298

               
               
               Conread position:235-662
               
               
               Cow position:chr28:25973752-25973311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:287
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):91, 17

               
               
               Conread position:235-673
               
               
               Cow position:chr28:9636247-9636686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 14

               
               
               Conread position:236-417
               
               
               Cow position:chr28:20281957-20281787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):64, 16

               
               
               Conread position:236-451
               
               
               Cow position:chr28:5552496-5552722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:236-453
               
               
               Cow position:chr28:18797520-18797311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):183, 49

               
               
               Conread position:236-462
               
               
               Cow position:chr28:5232150-5231920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):31, 108

               
               
               Conread position:236-670
               
               
               Cow position:chr28:5236386-5236830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 14

               
               
               Conread position:237-390
               
               
               Cow position:chr28:26304275-26304119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):82, 39

               
               
               Conread position:237-405
               
               
               Cow position:chr28:8655955-8656125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):13, 50

               
               
               Conread position:237-416
               
               
               Cow position:chr28:21744921-21744745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:237-422
               
               
               Cow position:chr28:26820068-26820256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):73, 12

               
               
               Conread position:237-426
               
               
               Cow position:chr28:11411330-11411516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):181, 86

               
               
               Conread position:237-517
               
               
               Cow position:chr28:3410780-3411066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):134, 82

               
               
               Conread position:237-563
               
               
               Cow position:chr28:8396533-8396220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):177, 12

               
               
               Conread position:237-597
               
               
               Cow position:chr28:8359109-8358747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:249
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:237-675
               
               
               Cow position:chr28:11527051-11527487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 12

               
               
               Conread position:237-675
               
               
               Cow position:chr28:15263510-15263956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:298
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):109, 15

               
               
               Conread position:237-681
               
               
               Cow position:chr28:8347942-8347497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 15

               
               
               Conread position:238-387
               
               
               Cow position:chr28:3311013-3311165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:238-406
               
               
               Cow position:chr28:16200532-16200703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):74, 94

               
               
               Conread position:238-410
               
               
               Cow position:chr28:11562036-11562210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):88, 15

               
               
               Conread position:238-468
               
               
               Cow position:chr28:13356159-13356391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):82, 15

               
               
               Conread position:238-480
               
               
               Cow position:chr28:13133842-13133593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):88, 15

               
               
               Conread position:238-492
               
               
               Cow position:chr28:11059698-11059454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):186, 14

               
               
               Conread position:238-580
               
               
               Cow position:chr28:9812491-9812143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):47, 103

               
               
               Conread position:238-604
               
               
               Cow position:chr28:5200034-5199664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):69, 11

               
               
               Conread position:238-610
               
               
               Cow position:chr28:9426144-9426521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 75

               
               
               Conread position:238-672
               
               
               Cow position:chr28:21103613-21104075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:323
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):57, 14

               
               
               Conread position:238-672
               
               
               Cow position:chr28:23793111-23793531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 41

               
               
               Conread position:238-673
               
               
               Cow position:chr28:4282282-4282721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 15

               
               
               Conread position:238-673
               
               
               Cow position:chr28:18791241-18790782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:317
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):71, 11

               
               
               Conread position:238-673
               
               
               Cow position:chr28:23460351-23459915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 14

               
               
               Conread position:238-674
               
               
               Cow position:chr28:21845158-21844725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 11

               
               
               Conread position:239-388
               
               
               Cow position:chr28:7750813-7750958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):8, 82

               
               
               Conread position:239-405
               
               
               Cow position:chr28:3759204-3759031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:239-406
               
               
               Cow position:chr28:6301291-6301121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:239-407
               
               
               Cow position:chr28:17737943-17738114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):61, 45

               
               
               Conread position:239-417
               
               
               Cow position:chr28:117551-117734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):54, 95

               
               
               Conread position:239-417
               
               
               Cow position:chr28:20046749-20046582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:239-420
               
               
               Cow position:chr28:28903352-28903534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:239-430
               
               
               Cow position:chr28:2077708-2077516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):81, 96

               
               
               Conread position:239-431
               
               
               Cow position:chr28:32014992-32014796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):79, 91

               
               
               Conread position:239-436
               
               
               Cow position:chr28:5609711-5609909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):176, 111

               
               
               Conread position:239-439
               
               
               Cow position:chr28:11827895-11827694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):89, 171

               
               
               Conread position:239-456
               
               
               Cow position:chr28:6563687-6563910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):92, 200

               
               
               Conread position:239-468
               
               
               Cow position:chr28:5630306-5630074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):89, 135

               
               
               Conread position:239-477
               
               
               Cow position:chr28:8827371-8827132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):80, 178

               
               
               Conread position:239-478
               
               
               Cow position:chr28:19015908-19015680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):87, 34

               
               
               Conread position:239-493
               
               
               Cow position:chr28:118821-118561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):54, 94

               
               
               Conread position:239-503
               
               
               Cow position:chr28:4873117-4873408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):56, 118

               
               
               Conread position:239-535
               
               
               Cow position:chr28:23296526-23296233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):103, 70

               
               
               Conread position:239-575
               
               
               Cow position:chr28:3449516-3449164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:254
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):113, 80

               
               
               Conread position:239-579
               
               
               Cow position:chr28:22571477-22571804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:235
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):232, 30

               
               
               Conread position:239-589
               
               
               Cow position:chr28:10495093-10495426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:239
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):69, 26

               
               
               Conread position:239-632
               
               
               Cow position:chr28:4881042-4881433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 26

               
               
               Conread position:239-633
               
               
               Cow position:chr28:11866461-11866859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 85

               
               
               Conread position:239-652
               
               
               Cow position:chr28:5436879-5437300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 134

               
               
               Conread position:239-669
               
               
               Cow position:chr28:18934641-18934230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:296
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):125, 11

               
               
               Conread position:239-673
               
               
               Cow position:chr28:20124988-20124556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 68

               
               
               Conread position:239-673
               
               
               Cow position:chr28:23531069-23530636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:297
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):185, 14

               
               
               Conread position:239-674
               
               
               Cow position:chr28:7697772-7698213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 177

               
               
               Conread position:239-678
               
               
               Cow position:chr28:9100135-9099699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 26

               
               
               Conread position:240-380
               
               
               Cow position:chr28:22170076-22170214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):122, 74

               
               
               Conread position:240-395
               
               
               Cow position:chr28:4588519-4588369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:240-412
               
               
               Cow position:chr28:9109417-9109250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:240-421
               
               
               Cow position:chr28:17943929-17943755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:240-422
               
               
               Cow position:chr28:3678564-3678385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):93, 9

               
               
               Conread position:240-422
               
               
               Cow position:chr28:7644952-7644763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):11, 132

               
               
               Conread position:240-422
               
               
               Cow position:chr28:10959005-10958825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):101, 79

               
               
               Conread position:240-429
               
               
               Cow position:chr28:13269924-13269745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:240-432
               
               
               Cow position:chr28:8681231-8681414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:240-452
               
               
               Cow position:chr28:4364617-4364830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):18, 36

               
               
               Conread position:240-455
               
               
               Cow position:chr28:28501448-28501222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):8, 204

               
               
               Conread position:240-460
               
               
               Cow position:chr28:8259838-8259612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):86, 199

               
               
               Conread position:240-463
               
               
               Cow position:chr28:4101718-4101501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):178, 51

               
               
               Conread position:240-466
               
               
               Cow position:chr28:11743622-11743841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):89, 46

               
               
               Conread position:240-467
               
               
               Cow position:chr28:8304448-8304224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):197, 80

               
               
               Conread position:240-467
               
               
               Cow position:chr28:17680831-17680599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):88, 198

               
               
               Conread position:240-475
               
               
               Cow position:chr28:777882-777644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:180
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):117, 196

               
               
               Conread position:240-475
               
               
               Cow position:chr28:12991341-12991105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):174, 81

               
               
               Conread position:240-477
               
               
               Cow position:chr28:32179905-32179660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):38, 179

               
               
               Conread position:240-479
               
               
               Cow position:chr28:19217018-19216789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):175, 45

               
               
               Conread position:240-493
               
               
               Cow position:chr28:34843366-34843624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):69, 179

               
               
               Conread position:240-503
               
               
               Cow position:chr28:20759487-20759761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):77, 146

               
               
               Conread position:240-508
               
               
               Cow position:chr28:3445273-3445547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):18, 155

               
               
               Conread position:240-521
               
               
               Cow position:chr28:4182207-4181926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):87, 57

               
               
               Conread position:240-521
               
               
               Cow position:chr28:19564029-19564307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 77

               
               
               Conread position:240-539
               
               
               Cow position:chr28:6358205-6358505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):60, 13

               
               
               Conread position:240-543
               
               
               Cow position:chr28:2524149-2523843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):9, 16

               
               
               Conread position:240-552
               
               
               Cow position:chr28:7371904-7372229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):86, 46

               
               
               Conread position:240-566
               
               
               Cow position:chr28:5193529-5193193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):137, 36

               
               
               Conread position:240-577
               
               
               Cow position:chr28:7008775-7009112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 84

               
               
               Conread position:240-591
               
               
               Cow position:chr28:30746532-30746879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 49

               
               
               Conread position:240-605
               
               
               Cow position:chr28:20409597-20409227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 111

               
               
               Conread position:240-612
               
               
               Cow position:chr28:4643564-4643935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 98

               
               
               Conread position:240-617
               
               
               Cow position:chr28:30326895-30327270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:270
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):165, 70

               
               
               Conread position:240-629
               
               
               Cow position:chr28:30937477-30937852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:273
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):178, 34

               
               
               Conread position:240-630
               
               
               Cow position:chr28:4834636-4835032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 47

               
               
               Conread position:240-633
               
               
               Cow position:chr28:23724263-23724645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 45

               
               
               Conread position:240-663
               
               
               Cow position:chr28:5074315-5074724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:296
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):177, 64

               
               
               Conread position:240-670
               
               
               Cow position:chr28:8787745-8787320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 140

               
               
               Conread position:240-671
               
               
               Cow position:chr28:5827137-5826721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:295
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):179, 70

               
               
               Conread position:240-672
               
               
               Cow position:chr28:3143679-3144120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 70

               
               
               Conread position:240-673
               
               
               Cow position:chr28:5931550-5931124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 36

               
               
               Conread position:240-673
               
               
               Cow position:chr28:11422613-11423033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 34

               
               
               Conread position:240-673
               
               
               Cow position:chr28:11884326-11884752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 9

               
               
               Conread position:240-673
               
               
               Cow position:chr28:22346228-22345790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 33

               
               
               Conread position:240-674
               
               
               Cow position:chr28:4071164-4070738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 29

               
               
               Conread position:240-674
               
               
               Cow position:chr28:16369883-16370305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 51

               
               
               Conread position:240-675
               
               
               Cow position:chr28:25057161-25056741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 9

               
               
               Conread position:240-677
               
               
               Cow position:chr28:5144308-5144757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 202

               
               
               Conread position:241-412
               
               
               Cow position:chr28:8936353-8936184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:241-419
               
               
               Cow position:chr28:29500611-29500427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):85, 8

               
               
               Conread position:241-448
               
               
               Cow position:chr28:5441692-5441901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):61, 90

               
               
               Conread position:241-465
               
               
               Cow position:chr28:11398589-11398818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):85, 186

               
               
               Conread position:241-474
               
               
               Cow position:chr28:9705861-9705623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):47, 196

               
               
               Conread position:241-482
               
               
               Cow position:chr28:10964613-10964387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):17, 94

               
               
               Conread position:241-585
               
               
               Cow position:chr28:10863595-10863927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:245
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):234, 34

               
               
               Conread position:241-611
               
               
               Cow position:chr28:1383066-1383446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:256
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):17, 118

               
               
               Conread position:241-622
               
               
               Cow position:chr28:8291618-8291254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:272
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):177, 78

               
               
               Conread position:241-629
               
               
               Cow position:chr28:6091561-6091174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:277
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):160, 66

               
               
               Conread position:241-671
               
               
               Cow position:chr28:24966590-24966160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 8

               
               
               Conread position:241-673
               
               
               Cow position:chr28:24996413-24996817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 70

               
               
               Conread position:241-673
               
               
               Cow position:chr28:26719535-26719131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 44

               
               
               Conread position:241-673
               
               
               Cow position:chr28:34877768-34878202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:310
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):67, 12

               
               
               Conread position:241-675
               
               
               Cow position:chr28:5684904-5684473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 8

               
               
               Conread position:242-409
               
               
               Cow position:chr28:26960709-26960872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:242-412
               
               
               Cow position:chr28:2151236-2151406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):87, 31

               
               
               Conread position:242-444
               
               
               Cow position:chr28:4876642-4876443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):175, 78

               
               
               Conread position:242-444
               
               
               Cow position:chr28:7557523-7557734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):20, 200

               
               
               Conread position:242-446
               
               
               Cow position:chr28:4163375-4163581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):5, 177

               
               
               Conread position:242-450
               
               
               Cow position:chr28:5805866-5805665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:242-468
               
               
               Cow position:chr28:17740029-17739801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:176
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):84, 193

               
               
               Conread position:242-468
               
               
               Cow position:chr28:20174042-20173812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):71, 100

               
               
               Conread position:242-469
               
               
               Cow position:chr28:4006985-4006760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):176, 92

               
               
               Conread position:242-478
               
               
               Cow position:chr28:4823805-4823569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):82, 57

               
               
               Conread position:242-492
               
               
               Cow position:chr28:11987367-11987123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):170, 31

               
               
               Conread position:242-492
               
               
               Cow position:chr28:12055605-12055361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):170, 31

               
               
               Conread position:242-494
               
               
               Cow position:chr28:3726004-3726264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:195
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):38, 178

               
               
               Conread position:242-535
               
               
               Cow position:chr28:11307313-11307599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):5, 35

               
               
               Conread position:242-553
               
               
               Cow position:chr28:5577736-5577412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):75, 42

               
               
               Conread position:242-566
               
               
               Cow position:chr28:22813452-22813139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):241, 49

               
               
               Conread position:242-613
               
               
               Cow position:chr28:10606434-10606805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:264
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):242, 47

               
               
               Conread position:242-632
               
               
               Cow position:chr28:11828755-11829131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 188

               
               
               Conread position:242-640
               
               
               Cow position:chr28:4159168-4158755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 198

               
               
               Conread position:242-640
               
               
               Cow position:chr28:4809974-4809597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 32

               
               
               Conread position:242-669
               
               
               Cow position:chr28:22371471-22371905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 31

               
               
               Conread position:242-671
               
               
               Cow position:chr28:10053128-10053566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 31

               
               
               Conread position:242-672
               
               
               Cow position:chr28:27218529-27218092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 148

               
               
               Conread position:242-673
               
               
               Cow position:chr28:10615746-10616181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 31

               
               
               Conread position:242-673
               
               
               Cow position:chr28:11585005-11585437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 79

               
               
               Conread position:242-673
               
               
               Cow position:chr28:30293382-30293819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:297
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):65, 27

               
               
               Conread position:242-674
               
               
               Cow position:chr28:3492583-3493015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 72

               
               
               Conread position:242-675
               
               
               Cow position:chr28:10588829-10589260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:302
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):175, 65

               
               
               Conread position:242-688
               
               
               Cow position:chr28:4884049-4884511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 297

               
               
               Conread position:242-689
               
               
               Cow position:chr28:16204126-16204579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 110

               
               
               Conread position:242-693
               
               
               Cow position:chr28:662304-661867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 44

               
               
               Conread position:243-411
               
               
               Cow position:chr28:26867951-26868116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:243-450
               
               
               Cow position:chr28:26826426-26826217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):7, 176

               
               
               Conread position:243-673
               
               
               Cow position:chr28:23007539-23007955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 42

               
               
               Conread position:244-674
               
               
               Cow position:chr28:15601475-15601033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:296
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):75, 9

               
               
               Conread position:245-392
               
               
               Cow position:chr28:9070085-9069942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):120, 5

               
               
               Conread position:245-431
               
               
               Cow position:chr28:20968375-20968568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:245-454
               
               
               Cow position:chr28:19038817-19039029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):70, 85

               
               
               Conread position:245-594
               
               
               Cow position:chr28:24082471-24082116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 189

               
               
               Conread position:245-611
               
               
               Cow position:chr28:22308845-22308478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:234
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):81, 109

               
               
               Conread position:245-664
               
               
               Cow position:chr28:5188228-5188622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:284
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):10, 75

               
               
               Conread position:245-672
               
               
               Cow position:chr28:6059270-6059701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 55

               
               
               Conread position:246-422
               
               
               Cow position:chr28:10890542-10890712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):171, 75

               
               
               Conread position:246-673
               
               
               Cow position:chr28:751428-750997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 131

               
               
               Conread position:246-673
               
               
               Cow position:chr28:7145000-7144559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:292
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):55, 77

               
               
               Conread position:246-673
               
               
               Cow position:chr28:12951616-12951203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 81

               
               
               Conread position:246-673
               
               
               Cow position:chr28:24672468-24672044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:290
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):67, 108

               
               
               Conread position:249-426
               
               
               Cow position:chr28:10203309-10203138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):168, 79

               
               
               Conread position:249-431
               
               
               Cow position:chr28:2821458-2821265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):69, 92

               
               
               Conread position:249-555
               
               
               Cow position:chr28:25129081-25128768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):169, 85

               
               
               Conread position:249-559
               
               
               Cow position:chr28:11079497-11079187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:226
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):68, 37

               
               
               Conread position:249-572
               
               
               Cow position:chr28:8140681-8140350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:232
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):53, 31

               
               
               Conread position:249-670
               
               
               Cow position:chr28:5204382-5203973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 25

               
               
               Conread position:249-673
               
               
               Cow position:chr28:7267752-7268165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 71

               
               
               Conread position:249-675
               
               
               Cow position:chr28:9740655-9740240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 47

               
               
               Conread position:250-477
               
               
               Cow position:chr28:5255067-5254842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:175
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):163, 70

               
               
               Conread position:250-540
               
               
               Cow position:chr28:24707095-24706808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):24, 43

               
               
               Conread position:250-672
               
               
               Cow position:chr28:24343549-24343139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:297
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):220, 35

               
               
               Conread position:250-673
               
               
               Cow position:chr28:1099481-1099871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:298
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):225, 70

               
               
               Conread position:251-427
               
               
               Cow position:chr28:5674067-5673894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):88, 65

               
               
               Conread position:251-456
               
               
               Cow position:chr28:15362773-15362567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):164, 76

               
               
               Conread position:251-673
               
               
               Cow position:chr28:4307698-4308127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 349

               
               
               Conread position:251-673
               
               
               Cow position:chr28:22323454-22323036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:278
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):182, 74

               
               
               Conread position:251-673
               
               
               Cow position:chr28:23410139-23410553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 53

               
               
               Conread position:252-479
               
               
               Cow position:chr28:2279408-2279622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:252-674
               
               
               Cow position:chr28:14998258-14997833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 36

               
               
               Conread position:253-528
               
               
               Cow position:chr28:4046037-4045769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 57

               
               
               Conread position:253-625
               
               
               Cow position:chr28:9684144-9684502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 57

               
               
               Conread position:253-671
               
               
               Cow position:chr28:5818031-5817620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 53

               
               
               Conread position:254-457
               
               
               Cow position:chr28:5711819-5712014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):84, 136

               
               
               Conread position:254-605
               
               
               Cow position:chr28:21363932-21363581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 19

               
               
               Conread position:254-645
               
               
               Cow position:chr28:4089867-4090246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:266
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):276, 74

               
               
               Conread position:254-673
               
               
               Cow position:chr28:3914897-3914480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 53

               
               
               Conread position:257-442
               
               
               Cow position:chr28:8516001-8516182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):154, 55

               
               
               Conread position:257-503
               
               
               Cow position:chr28:20397177-20397430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):21, 170

               
               
               Conread position:257-552
               
               
               Cow position:chr28:18369824-18370115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):54, 81

               
               
               Conread position:257-674
               
               
               Cow position:chr28:26743820-26743391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 216

               
               
               Conread position:258-450
               
               
               Cow position:chr28:16879756-16879567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):156, 62

               
               
               Conread position:258-469
               
               
               Cow position:chr28:555684-555479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):166, 26

               
               
               Conread position:258-636
               
               
               Cow position:chr28:18186742-18186352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 52

               
               
               Conread position:258-674
               
               
               Cow position:chr28:16346350-16346757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 10

               
               
               Conread position:258-675
               
               
               Cow position:chr28:12430795-12430377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 80

               
               
               Conread position:259-418
               
               
               Cow position:chr28:26530680-26530838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:261-457
               
               
               Cow position:chr28:3397020-3397210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):157, 44

               
               
               Conread position:261-673
               
               
               Cow position:chr28:7512396-7512821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 102

               
               
               Conread position:261-673
               
               
               Cow position:chr28:16210916-16211326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 84

               
               
               Conread position:262-552
               
               
               Cow position:chr28:3741053-3740767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):152, 46

               
               
               Conread position:264-458
               
               
               Cow position:chr28:9384109-9384301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):148, 86

               
               
               Conread position:265-640
               
               
               Cow position:chr28:4138486-4138866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:264
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):53, 174

               
               
               Conread position:265-671
               
               
               Cow position:chr28:30303027-30303422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):218, 59

               
               
               Conread position:268-528
               
               
               Cow position:chr28:7388587-7388851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):11, 146

               
               
               Conread position:272-673
               
               
               Cow position:chr28:26103872-26103486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 38

               
               
               Conread position:273-672
               
               
               Cow position:chr28:34134031-34133635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:268
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):140, 19

               
               
               Conread position:274-673
               
               
               Cow position:chr28:8021931-8022340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 37

               
               
               Conread position:277-471
               
               
               Cow position:chr28:19294964-19295156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):49, 137

               
               
               Conread position:277-674
               
               
               Cow position:chr28:3408053-3408448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 43

               
               
               Conread position:289-468
               
               
               Cow position:chr28:10775552-10775737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):11, 96

               
               
               Conread position:289-674
               
               
               Cow position:chr28:6971191-6971570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 49

               
               
               Conread position:293-537
               
               
               Cow position:chr28:8147713-8147955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):131, 17

               
               
               Conread position:294-673
               
               
               Cow position:chr28:29199881-29199497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:268
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):124, 39

               
               
               Conread position:297-540
               
               
               Cow position:chr28:34247881-34248119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):29, 44

               
               
               Conread position:301-473
               
               
               Cow position:chr28:8149484-8149661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:301-490
               
               
               Cow position:chr28:2772856-2772670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):6, 35

               
               
               Conread position:301-673
               
               
               Cow position:chr28:25596768-25596403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 19

               
               
               Conread position:302-524
               
               
               Cow position:chr28:13090385-13090607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):127, 22

               
               
               Conread position:302-674
               
               
               Cow position:chr28:20963382-20963763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:257
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):14, 58

               
               
               Conread position:303-590
               
               
               Cow position:chr28:25728337-25728049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:209
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):23, 32

               
               
               Conread position:303-673
               
               
               Cow position:chr28:14649487-14649119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 83

               
               
               Conread position:308-528
               
               
               Cow position:chr28:32174766-32174546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):110, 29

               
               
               Conread position:308-673
               
               
               Cow position:chr28:19025868-19026232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 25

               
               
               Conread position:308-676
               
               
               Cow position:chr28:8408873-8408505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 131

               
               
               Conread position:308-697
               
               
               Cow position:chr28:33052173-33051768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 25

               
               
               Conread position:310-510
               
               
               Cow position:chr28:7437336-7437526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:310-614
               
               
               Cow position:chr28:2752357-2752671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 110

               
               
               Conread position:310-673
               
               
               Cow position:chr28:2899124-2898766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 23

               
               
               Conread position:310-673
               
               
               Cow position:chr28:20313414-20313046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 130

               
               
               Conread position:310-674
               
               
               Cow position:chr28:7684569-7684908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:255
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):237, 24

               
               
               Conread position:310-674
               
               
               Cow position:chr28:31109866-31110236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:258
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):28, 127

               
               
               Conread position:310-675
               
               
               Cow position:chr28:16110072-16109713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 26

               
               
               Conread position:310-685
               
               
               Cow position:chr28:2131789-2132164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 23

               
               
               Conread position:311-526
               
               
               Cow position:chr28:12070365-12070154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):156, 33

               
               
               Conread position:311-669
               
               
               Cow position:chr28:28164217-28163865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:255
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):101, 13

               
               
               Conread position:312-673
               
               
               Cow position:chr28:12619708-12619333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 54

               
               
               Conread position:313-492
               
               
               Cow position:chr28:17601422-17601601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):31, 20

               
               
               Conread position:313-558
               
               
               Cow position:chr28:25677209-25677460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):114, 21

               
               
               Conread position:313-585
               
               
               Cow position:chr28:4355678-4355403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:208
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):111, 20

               
               
               Conread position:313-675
               
               
               Cow position:chr28:21355363-21354993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 20

               
               
               Conread position:313-675
               
               
               Cow position:chr28:25249486-25249124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 20

               
               
               Conread position:314-673
               
               
               Cow position:chr28:10172286-10172643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 19

               
               
               Conread position:316-594
               
               
               Cow position:chr28:24018110-24017843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):188, 8

               
               
               Conread position:317-464
               
               
               Cow position:chr28:11816538-11816686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):97, 17

               
               
               Conread position:317-674
               
               
               Cow position:chr28:7548929-7549293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 121

               
               
               Conread position:318-674
               
               
               Cow position:chr28:14934085-14933731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:255
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):115, 31

               
               
               Conread position:319-476
               
               
               Cow position:chr28:4438839-4438679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):41, 117

               
               
               Conread position:320-600
               
               
               Cow position:chr28:1632532-1632815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:214
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):144, 13

               
               
               Conread position:320-608
               
               
               Cow position:chr28:18759930-18760216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):97, 13

               
               
               Conread position:320-672
               
               
               Cow position:chr28:14235079-14234744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:246
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):13, 55

               
               
               Conread position:320-673
               
               
               Cow position:chr28:11752012-11752374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 116

               
               
               Conread position:320-674
               
               
               Cow position:chr28:18354200-18354549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:258
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):10, 90

               
               
               Conread position:321-475
               
               
               Cow position:chr28:7498023-7498179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):97, 12

               
               
               Conread position:321-672
               
               
               Cow position:chr28:33163339-33163696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 96

               
               
               Conread position:322-597
               
               
               Cow position:chr28:14512659-14512365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):9, 214

               
               
               Conread position:322-674
               
               
               Cow position:chr28:26922245-26922595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 11

               
               
               Conread position:323-539
               
               
               Cow position:chr28:13232989-13233204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):12, 82

               
               
               Conread position:324-451
               
               
               Cow position:chr28:3147600-3147475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):87, 13

               
               
               Conread position:326-520
               
               
               Cow position:chr28:7156957-7156764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):89, 109

               
               
               Conread position:326-674
               
               
               Cow position:chr28:23676258-23675913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 112

               
               
               Conread position:327-669
               
               
               Cow position:chr28:7865448-7865098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 106

               
               
               Conread position:327-672
               
               
               Cow position:chr28:13865958-13865617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:253
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):139, 43

               
               
               Conread position:327-672
               
               
               Cow position:chr28:16085444-16085096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 183

               
               
               Conread position:328-505
               
               
               Cow position:chr28:4765794-4765614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):66, 113

               
               
               Conread position:329-674
               
               
               Cow position:chr28:21598133-21598484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 92

               
               
               Conread position:331-672
               
               
               Cow position:chr28:16407199-16406858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):154, 53

               
               
               Conread position:333-670
               
               
               Cow position:chr28:7228277-7228612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 18

               
               
               Conread position:337-604
               
               
               Cow position:chr28:32365952-32365681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:199
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):81, 7

               
               
               Conread position:337-630
               
               
               Cow position:chr28:32735199-32734906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):80, 95

               
               
               Conread position:337-663
               
               
               Cow position:chr28:26614982-26614669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 98

               
               
               Conread position:337-670
               
               
               Cow position:chr28:15043753-15044081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 64

               
               
               Conread position:337-673
               
               
               Cow position:chr28:2862977-2862632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 98

               
               
               Conread position:338-605
               
               
               Cow position:chr28:3169081-3169357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):124, 75

               
               
               Conread position:339-496
               
               
               Cow position:chr28:2762302-2762141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):79, 99

               
               
               Conread position:340-592
               
               
               Cow position:chr28:2873024-2872765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):74, 9

               
               
               Conread position:353-673
               
               
               Cow position:chr28:4536552-4536241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):73, 60

               
               
               Conread position:354-670
               
               
               Cow position:chr28:13726255-13725935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):12, 24

               
               
               Conread position:354-672
               
               
               Cow position:chr28:25283286-25282976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:222
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):193, 55

               
               
               Conread position:356-687
               
               
               Cow position:chr28:21380972-21380634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 85

               
               
               Conread position:359-673
               
               
               Cow position:chr28:13267876-13267552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 56

               
               
               Conread position:361-674
               
               
               Cow position:chr28:21672878-21672568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:221
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):123, 70

               
               
               Conread position:367-521
               
               
               Cow position:chr28:3160874-3161031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):57, 52

               
               
               Conread position:367-616
               
               
               Cow position:chr28:17235657-17235901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):75, 52

               
               
               Conread position:367-663
               
               
               Cow position:chr28:25806652-25806363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):48, 117

               
               
               Conread position:367-675
               
               
               Cow position:chr28:10745293-10744978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:227
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):62, 157

               
               
               Conread position:367-675
               
               
               Cow position:chr28:14151301-14151003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):119, 52

               
               
               Conread position:367-675
               
               
               Cow position:chr28:26533622-26533311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):63, 79

               
               
               Conread position:368-673
               
               
               Cow position:chr28:13607976-13607657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):42, 48

               
               
               Conread position:394-682
               
               
               Cow position:chr28:3714853-3714563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):36, 130

               
               
               Conread position:399-671
               
               
               Cow position:chr28:16252813-16253085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 16

               
               
               Conread position:409-593
               
               
               Cow position:chr28:7607942-7608133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):67, 26

               
               
               Conread position:417-608
               
               
               Cow position:chr28:33032288-33032096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):64, 18

               
               
               Conread position:417-634
               
               
               Cow position:chr28:25459560-25459335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):41, 19

               
               
               Conread position:417-673
               
               
               Cow position:chr28:8681813-8682080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:201
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):66, 18

               
               
               Conread position:421-674
               
               
               Cow position:chr28:19222580-19222828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:201
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):106, 14

               
               
               Conread position:422-673
               
               
               Cow position:chr28:6307913-6307663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):56, 14

               
               
               Conread position:428-673
               
               
               Cow position:chr28:2905590-2905351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:181
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:434-673
               
               
               Cow position:chr28:22170699-22170947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):29, 109

               
               
               Conread position:436-638
               
               
               Cow position:chr28:118042-118249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):30, 86

               
               
               Conread position:436-671
               
               
               Cow position:chr28:5773644-5773412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:184
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):31, 46

               
               
               Conread position:436-673
               
               
               Cow position:chr28:4022396-4022153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):48, 154

               
               
               Conread position:436-686
               
               
               Cow position:chr28:23480250-23480505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):91, 83

               
               
               Conread position:439-629
               
               
               Cow position:chr28:19024150-19023947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):30, 90

               
               
               Conread position:439-673
               
               
               Cow position:chr28:9390358-9390594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:183
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):39, 82

               
               
               Conread position:439-674
               
               
               Cow position:chr28:17029712-17029946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):42, 60

               
               
               Conread position:440-670
               
               
               Cow position:chr28:12987411-12987174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):46, 36

               
               
               Conread position:440-673
               
               
               Cow position:chr28:7590177-7590411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:181
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):83, 87

               
               
               Conread position:475-675
               
               
               Cow position:chr28:17738106-17738310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):52, 7

               
               
               Conread position:484-672
               
               
               Cow position:chr28:11451504-11451695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):43, 13

               
               
               Conread position:159-487
               
               
               Cow position:chr29:33321632-33321304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):33, 24

               
               
               Conread position:191-427
               
               
               Cow position:chr29:23819135-23819378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:226-430
               
               
               Cow position:chr29:43088521-43088317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):22, 100

               
               
               Conread position:227-679
               
               
               Cow position:chr29:21706182-21706618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:302
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):16, 114

               
               
               Conread position:228-422
               
               
               Cow position:chr29:20177479-20177686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):92, 21

               
               
               Conread position:230-650
               
               
               Cow position:chr29:732822-732404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 58

               
               
               Conread position:230-675
               
               
               Cow position:chr29:2188144-2188575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:293
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):10, 133

               
               
               Conread position:231-510
               
               
               Cow position:chr29:29324212-29324487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):75, 23

               
               
               Conread position:232-673
               
               
               Cow position:chr29:40891500-40891938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 20

               
               
               Conread position:233-664
               
               
               Cow position:chr29:22777974-22778410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 40

               
               
               Conread position:233-673
               
               
               Cow position:chr29:10653529-10653111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:296
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):232, 76

               
               
               Conread position:234-405
               
               
               Cow position:chr29:34274167-34274345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:234-422
               
               
               Cow position:chr29:23142127-23142317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):94, 19

               
               
               Conread position:234-455
               
               
               Cow position:chr29:9378842-9378619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):9, 95

               
               
               Conread position:234-460
               
               
               Cow position:chr29:32655887-32656115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):13, 91

               
               
               Conread position:234-464
               
               
               Cow position:chr29:24187858-24188092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):54, 18

               
               
               Conread position:234-467
               
               
               Cow position:chr29:35259187-35258955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:234-476
               
               
               Cow position:chr29:38858008-38858253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):90, 12

               
               
               Conread position:234-492
               
               
               Cow position:chr29:1011388-1011629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):87, 15

               
               
               Conread position:234-504
               
               
               Cow position:chr29:18449932-18450202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):94, 191

               
               
               Conread position:234-512
               
               
               Cow position:chr29:23220283-23220577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):9, 23

               
               
               Conread position:234-515
               
               
               Cow position:chr29:36952106-36952378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):183, 85

               
               
               Conread position:234-517
               
               
               Cow position:chr29:20167629-20167342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):76, 42

               
               
               Conread position:234-521
               
               
               Cow position:chr29:23812843-23813120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):183, 18

               
               
               Conread position:234-579
               
               
               Cow position:chr29:27816542-27816208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):184, 52

               
               
               Conread position:234-580
               
               
               Cow position:chr29:35084018-35084370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):97, 13

               
               
               Conread position:234-597
               
               
               Cow position:chr29:17297344-17296967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 126

               
               
               Conread position:234-604
               
               
               Cow position:chr29:5408936-5409318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:267
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):96, 121

               
               
               Conread position:234-633
               
               
               Cow position:chr29:28979310-28979676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:296
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):293, 37

               
               
               Conread position:234-640
               
               
               Cow position:chr29:36210357-36209961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:293
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):9, 46

               
               
               Conread position:234-671
               
               
               Cow position:chr29:21592902-21592470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:290
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):45, 13

               
               
               Conread position:234-672
               
               
               Cow position:chr29:10839145-10838715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 94

               
               
               Conread position:234-672
               
               
               Cow position:chr29:11916026-11915581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 15

               
               
               Conread position:234-672
               
               
               Cow position:chr29:23698177-23697743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 38

               
               
               Conread position:234-672
               
               
               Cow position:chr29:31929192-31928744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 69

               
               
               Conread position:234-673
               
               
               Cow position:chr29:17110159-17109735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):293, 37

               
               
               Conread position:234-673
               
               
               Cow position:chr29:19949512-19949073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 100

               
               
               Conread position:234-673
               
               
               Cow position:chr29:24293075-24292639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:308
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):103, 18

               
               
               Conread position:234-673
               
               
               Cow position:chr29:29057386-29056948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 184

               
               
               Conread position:234-673
               
               
               Cow position:chr29:35405585-35406030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:303
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):92, 19

               
               
               Conread position:234-674
               
               
               Cow position:chr29:34745456-34745892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 18

               
               
               Conread position:234-674
               
               
               Cow position:chr29:35501458-35501886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 62

               
               
               Conread position:234-675
               
               
               Cow position:chr29:17222621-17222170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 19

               
               
               Conread position:235-422
               
               
               Cow position:chr29:3538480-3538660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):182, 50

               
               
               Conread position:235-426
               
               
               Cow position:chr29:4441001-4441192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):93, 18

               
               
               Conread position:235-427
               
               
               Cow position:chr29:40350876-40351066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):99, 77

               
               
               Conread position:235-460
               
               
               Cow position:chr29:7290974-7290753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):179, 38

               
               
               Conread position:235-471
               
               
               Cow position:chr29:396606-396379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:235-515
               
               
               Cow position:chr29:21645522-21645246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):75, 103

               
               
               Conread position:235-539
               
               
               Cow position:chr29:5046857-5046550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):93, 17

               
               
               Conread position:235-650
               
               
               Cow position:chr29:31489529-31489106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:287
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):72, 243

               
               
               Conread position:235-660
               
               
               Cow position:chr29:40097185-40096733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 12

               
               
               Conread position:235-672
               
               
               Cow position:chr29:5893052-5892611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 39

               
               
               Conread position:235-673
               
               
               Cow position:chr29:9709899-9709462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 76

               
               
               Conread position:235-673
               
               
               Cow position:chr29:31786880-31786442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:284
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):7, 52

               
               
               Conread position:236-415
               
               
               Cow position:chr29:18748182-18748366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):7, 103

               
               
               Conread position:236-417
               
               
               Cow position:chr29:11081189-11081374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:236-417
               
               
               Cow position:chr29:19187229-19187048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):85, 13

               
               
               Conread position:236-426
               
               
               Cow position:chr29:17436952-17436764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):11, 51

               
               
               Conread position:236-647
               
               
               Cow position:chr29:22690430-22690009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:282
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):59, 16

               
               
               Conread position:236-673
               
               
               Cow position:chr29:19756640-19756212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:297
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):121, 14

               
               
               Conread position:236-673
               
               
               Cow position:chr29:32963728-32963318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 37

               
               
               Conread position:236-673
               
               
               Cow position:chr29:39111119-39111544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 79

               
               
               Conread position:236-674
               
               
               Cow position:chr29:21196449-21196888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 16

               
               
               Conread position:237-392
               
               
               Cow position:chr29:40112582-40112429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:237-409
               
               
               Cow position:chr29:38732359-38732183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:237-412
               
               
               Cow position:chr29:27929969-27929795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):10, 85

               
               
               Conread position:237-417
               
               
               Cow position:chr29:11894903-11894720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:237-442
               
               
               Cow position:chr29:15798154-15797947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):89, 40

               
               
               Conread position:237-448
               
               
               Cow position:chr29:19363911-19363700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):181, 97

               
               
               Conread position:237-477
               
               
               Cow position:chr29:39038066-39038309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):102, 195

               
               
               Conread position:237-549
               
               
               Cow position:chr29:8862296-8862590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):203, 58

               
               
               Conread position:237-579
               
               
               Cow position:chr29:40994677-40995030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:242
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):73, 10

               
               
               Conread position:237-622
               
               
               Cow position:chr29:20910487-20910886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:254
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):100, 287

               
               
               Conread position:237-660
               
               
               Cow position:chr29:23155437-23155027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:297
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):89, 12

               
               
               Conread position:237-672
               
               
               Cow position:chr29:24624444-24624012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 39

               
               
               Conread position:237-673
               
               
               Cow position:chr29:22162059-22162487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 38

               
               
               Conread position:238-402
               
               
               Cow position:chr29:24605097-24604933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):91, 14

               
               
               Conread position:238-427
               
               
               Cow position:chr29:25793342-25793158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):108, 9

               
               
               Conread position:238-464
               
               
               Cow position:chr29:28420959-28420728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):80, 94

               
               
               Conread position:238-475
               
               
               Cow position:chr29:22720446-22720689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):149, 15

               
               
               Conread position:238-492
               
               
               Cow position:chr29:27926975-27926720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):55, 9

               
               
               Conread position:238-528
               
               
               Cow position:chr29:20925111-20924813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:238-534
               
               
               Cow position:chr29:29188894-29189188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:238-539
               
               
               Cow position:chr29:30227079-30227375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:215
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):88, 14

               
               
               Conread position:238-624
               
               
               Cow position:chr29:14838607-14838998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:256
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):178, 8

               
               
               Conread position:238-629
               
               
               Cow position:chr29:26275803-26275421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):289, 75

               
               
               Conread position:238-667
               
               
               Cow position:chr29:25268339-25267887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:293
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):57, 14

               
               
               Conread position:238-674
               
               
               Cow position:chr29:1325648-1325203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 183

               
               
               Conread position:238-675
               
               
               Cow position:chr29:18878279-18878739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:318
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):16, 36

               
               
               Conread position:239-427
               
               
               Cow position:chr29:14746979-14746792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:239-431
               
               
               Cow position:chr29:26211254-26211057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):79, 119

               
               
               Conread position:239-433
               
               
               Cow position:chr29:22576977-22577171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):87, 182

               
               
               Conread position:239-448
               
               
               Cow position:chr29:27683764-27683963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):179, 28

               
               
               Conread position:239-450
               
               
               Cow position:chr29:36781109-36781317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):179, 81

               
               
               Conread position:239-452
               
               
               Cow position:chr29:16200275-16200493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:239-456
               
               
               Cow position:chr29:38754737-38754958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):155, 0

               
               
               Conread position:239-475
               
               
               Cow position:chr29:30294670-30294911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):79, 193

               
               
               Conread position:239-500
               
               
               Cow position:chr29:42630318-42630058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):185, 94

               
               
               Conread position:239-509
               
               
               Cow position:chr29:32656637-32656359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):61, 46

               
               
               Conread position:239-516
               
               
               Cow position:chr29:36249239-36248956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):100, 123

               
               
               Conread position:239-524
               
               
               Cow position:chr29:16290924-16290643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):100, 66

               
               
               Conread position:239-592
               
               
               Cow position:chr29:31674832-31674471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:252
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):121, 129

               
               
               Conread position:239-616
               
               
               Cow position:chr29:37618509-37618126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 239

               
               
               Conread position:239-621
               
               
               Cow position:chr29:29475052-29475440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:266
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):55, 61

               
               
               Conread position:239-622
               
               
               Cow position:chr29:25092305-25091923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 95

               
               
               Conread position:239-666
               
               
               Cow position:chr29:27668453-27668873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:300
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):89, 165

               
               
               Conread position:239-671
               
               
               Cow position:chr29:16196056-16195618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:304
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):70, 210

               
               
               Conread position:239-671
               
               
               Cow position:chr29:23845041-23844597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 209

               
               
               Conread position:239-673
               
               
               Cow position:chr29:23874663-23874223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 198

               
               
               Conread position:239-673
               
               
               Cow position:chr29:32799503-32799939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 10

               
               
               Conread position:239-674
               
               
               Cow position:chr29:41531052-41530612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 113

               
               
               Conread position:239-675
               
               
               Cow position:chr29:3502763-3502318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:298
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):106, 122

               
               
               Conread position:239-675
               
               
               Cow position:chr29:4624797-4625231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:297
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:239-675
               
               
               Cow position:chr29:15738148-15738582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:297
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):104, 46

               
               
               Conread position:239-675
               
               
               Cow position:chr29:35458568-35459009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 94

               
               
               Conread position:239-676
               
               
               Cow position:chr29:1933369-1933797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:293
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):77, 46

               
               
               Conread position:239-676
               
               
               Cow position:chr29:35677340-35677782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 93

               
               
               Conread position:240-365
               
               
               Cow position:chr29:659481-659356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:240-406
               
               
               Cow position:chr29:23678901-23678742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):104, 79

               
               
               Conread position:240-409
               
               
               Cow position:chr29:2219587-2219417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:240-412
               
               
               Cow position:chr29:17282261-17282095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):60, 34

               
               
               Conread position:240-415
               
               
               Cow position:chr29:10191845-10192015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):149, 45

               
               
               Conread position:240-418
               
               
               Cow position:chr29:24660877-24660709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:240-422
               
               
               Cow position:chr29:4023195-4023020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:240-422
               
               
               Cow position:chr29:14577057-14576875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):175, 94

               
               
               Conread position:240-454
               
               
               Cow position:chr29:19176715-19176930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):109, 64

               
               
               Conread position:240-459
               
               
               Cow position:chr29:22729765-22729545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):195, 94

               
               
               Conread position:240-469
               
               
               Cow position:chr29:31982020-31981799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):179, 9

               
               
               Conread position:240-470
               
               
               Cow position:chr29:16279177-16278955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):170, 79

               
               
               Conread position:240-473
               
               
               Cow position:chr29:26540340-26540576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:176
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):99, 195

               
               
               Conread position:240-474
               
               
               Cow position:chr29:22734906-22735142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):67, 27

               
               
               Conread position:240-475
               
               
               Cow position:chr29:44991225-44991461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):30, 97

               
               
               Conread position:240-479
               
               
               Cow position:chr29:4070820-4070586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:240-499
               
               
               Cow position:chr29:501400-501137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):21, 9

               
               
               Conread position:240-507
               
               
               Cow position:chr29:30366855-30367128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):79, 45

               
               
               Conread position:240-509
               
               
               Cow position:chr29:23825862-23825596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:194
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):149, 67

               
               
               Conread position:240-521
               
               
               Cow position:chr29:28994055-28993776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:198
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):144, 10

               
               
               Conread position:240-523
               
               
               Cow position:chr29:22518921-22519216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):38, 101

               
               
               Conread position:240-531
               
               
               Cow position:chr29:29923377-29923668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):98, 13

               
               
               Conread position:240-535
               
               
               Cow position:chr29:13028650-13028339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 184

               
               
               Conread position:240-537
               
               
               Cow position:chr29:21666286-21665988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):179, 194

               
               
               Conread position:240-539
               
               
               Cow position:chr29:5994889-5995202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):67, 29

               
               
               Conread position:240-550
               
               
               Cow position:chr29:7310863-7310576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):170, 45

               
               
               Conread position:240-591
               
               
               Cow position:chr29:12025279-12025629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 33

               
               
               Conread position:240-605
               
               
               Cow position:chr29:25814635-25815004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):95, 118

               
               
               Conread position:240-613
               
               
               Cow position:chr29:4085496-4085138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):280, 45

               
               
               Conread position:240-630
               
               
               Cow position:chr29:26259677-26259282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:271
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):8, 68

               
               
               Conread position:240-641
               
               
               Cow position:chr29:1022493-1022085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 9

               
               
               Conread position:240-649
               
               
               Cow position:chr29:6337850-6337450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 12

               
               
               Conread position:240-652
               
               
               Cow position:chr29:16657890-16657470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 10

               
               
               Conread position:240-665
               
               
               Cow position:chr29:19428850-19428435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 18

               
               
               Conread position:240-669
               
               
               Cow position:chr29:4479967-4480408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 102

               
               
               Conread position:240-671
               
               
               Cow position:chr29:2644120-2644542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:277
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):10, 46

               
               
               Conread position:240-671
               
               
               Cow position:chr29:19762463-19762038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):242, 44

               
               
               Conread position:240-673
               
               
               Cow position:chr29:4520530-4520099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 16

               
               
               Conread position:240-673
               
               
               Cow position:chr29:8926250-8926695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 33

               
               
               Conread position:240-673
               
               
               Cow position:chr29:13634120-13634536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:293
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):166, 44

               
               
               Conread position:240-673
               
               
               Cow position:chr29:25737220-25737652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 13

               
               
               Conread position:240-673
               
               
               Cow position:chr29:26779077-26778648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 74

               
               
               Conread position:240-673
               
               
               Cow position:chr29:34359623-34360030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:302
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):10, 79

               
               
               Conread position:240-673
               
               
               Cow position:chr29:34773548-34773964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 47

               
               
               Conread position:240-673
               
               
               Cow position:chr29:40583985-40583561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:302
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):67, 33

               
               
               Conread position:240-675
               
               
               Cow position:chr29:21932921-21933351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:299
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):97, 45

               
               
               Conread position:240-676
               
               
               Cow position:chr29:27858987-27858552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 9

               
               
               Conread position:240-687
               
               
               Cow position:chr29:749691-750152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 153

               
               
               Conread position:241-392
               
               
               Cow position:chr29:36546583-36546735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:241-426
               
               
               Cow position:chr29:16735425-16735237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):85, 112

               
               
               Conread position:241-426
               
               
               Cow position:chr29:26631248-26631055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):85, 187

               
               
               Conread position:241-503
               
               
               Cow position:chr29:44139046-44139312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):173, 137

               
               
               Conread position:241-516
               
               
               Cow position:chr29:19250542-19250269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):85, 152

               
               
               Conread position:241-535
               
               
               Cow position:chr29:1008019-1007718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):17, 47

               
               
               Conread position:241-542
               
               
               Cow position:chr29:20243607-20243914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):73, 12

               
               
               Conread position:241-592
               
               
               Cow position:chr29:22028763-22029098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:250
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):173, 8

               
               
               Conread position:241-634
               
               
               Cow position:chr29:26270267-26269870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:256
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):28, 72

               
               
               Conread position:241-671
               
               
               Cow position:chr29:35292286-35291865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 83

               
               
               Conread position:241-673
               
               
               Cow position:chr29:4874691-4875139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 50

               
               
               Conread position:241-673
               
               
               Cow position:chr29:26017301-26017747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 247

               
               
               Conread position:241-673
               
               
               Cow position:chr29:29769156-29769582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 8

               
               
               Conread position:241-675
               
               
               Cow position:chr29:5063342-5062893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:306
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):173, 81

               
               
               Conread position:241-675
               
               
               Cow position:chr29:34297371-34297803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 85

               
               
               Conread position:241-686
               
               
               Cow position:chr29:36531065-36530613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 189

               
               
               Conread position:242-405
               
               
               Cow position:chr29:7414692-7414535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):147, 25

               
               
               Conread position:242-407
               
               
               Cow position:chr29:33143159-33143322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:242-412
               
               
               Cow position:chr29:936401-936234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:242-420
               
               
               Cow position:chr29:36697955-36697775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):96, 38

               
               
               Conread position:242-422
               
               
               Cow position:chr29:32215902-32215725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:242-451
               
               
               Cow position:chr29:29308384-29308586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):175, 53

               
               
               Conread position:242-471
               
               
               Cow position:chr29:31092647-31092417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):86, 122

               
               
               Conread position:242-473
               
               
               Cow position:chr29:25944097-25944339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):84, 13

               
               
               Conread position:242-479
               
               
               Cow position:chr29:36357326-36357087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:184
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):84, 157

               
               
               Conread position:242-482
               
               
               Cow position:chr29:22166889-22167123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):176, 71

               
               
               Conread position:242-503
               
               
               Cow position:chr29:38979882-38980137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):176, 63

               
               
               Conread position:242-524
               
               
               Cow position:chr29:20770542-20770256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:206
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):58, 93

               
               
               Conread position:242-539
               
               
               Cow position:chr29:3685323-3685614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):147, 80

               
               
               Conread position:242-549
               
               
               Cow position:chr29:5520286-5520598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):76, 94

               
               
               Conread position:242-621
               
               
               Cow position:chr29:41112692-41113045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:265
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):175, 44

               
               
               Conread position:242-628
               
               
               Cow position:chr29:19125528-19125152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:268
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):63, 105

               
               
               Conread position:242-670
               
               
               Cow position:chr29:22613619-22613198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 34

               
               
               Conread position:242-673
               
               
               Cow position:chr29:28195335-28195753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):227, 65

               
               
               Conread position:242-674
               
               
               Cow position:chr29:4121054-4120608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 192

               
               
               Conread position:242-674
               
               
               Cow position:chr29:12680356-12679917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 192

               
               
               Conread position:242-674
               
               
               Cow position:chr29:20626768-20626339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:290
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):46, 113

               
               
               Conread position:243-475
               
               
               Cow position:chr29:8163630-8163864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):57, 42

               
               
               Conread position:243-657
               
               
               Cow position:chr29:28739824-28739408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:267
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):83, 111

               
               
               Conread position:243-673
               
               
               Cow position:chr29:43328829-43328402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 43

               
               
               Conread position:244-545
               
               
               Cow position:chr29:2262785-2263102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):64, 178

               
               
               Conread position:244-674
               
               
               Cow position:chr29:1395769-1395368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:309
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):6, 33

               
               
               Conread position:245-422
               
               
               Cow position:chr29:8634847-8634670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):170, 54

               
               
               Conread position:245-435
               
               
               Cow position:chr29:22335030-22335228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):62, 41

               
               
               Conread position:245-615
               
               
               Cow position:chr29:9310798-9310446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 43

               
               
               Conread position:245-674
               
               
               Cow position:chr29:24952882-24952448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 133

               
               
               Conread position:245-675
               
               
               Cow position:chr29:45589409-45589822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:280
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):171, 11

               
               
               Conread position:246-457
               
               
               Cow position:chr29:3293137-3292928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):169, 78

               
               
               Conread position:246-521
               
               
               Cow position:chr29:32894451-32894184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):172, 64

               
               
               Conread position:246-667
               
               
               Cow position:chr29:40763502-40763915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:288
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):220, 88

               
               
               Conread position:249-411
               
               
               Cow position:chr29:1946724-1946880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:249-421
               
               
               Cow position:chr29:935117-934940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):46, 170

               
               
               Conread position:249-515
               
               
               Cow position:chr29:43183127-43183386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):167, 39

               
               
               Conread position:249-670
               
               
               Cow position:chr29:40117756-40117335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 71

               
               
               Conread position:249-673
               
               
               Cow position:chr29:22714519-22714964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 196

               
               
               Conread position:250-411
               
               
               Cow position:chr29:17663568-17663733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):60, 34

               
               
               Conread position:250-489
               
               
               Cow position:chr29:30681513-30681764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):73, 189

               
               
               Conread position:250-673
               
               
               Cow position:chr29:21443151-21443580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 24

               
               
               Conread position:251-403
               
               
               Cow position:chr29:10638416-10638570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):85, 32

               
               
               Conread position:251-552
               
               
               Cow position:chr29:15947358-15947056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):75, 236

               
               
               Conread position:251-651
               
               
               Cow position:chr29:30441128-30440711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 114

               
               
               Conread position:252-492
               
               
               Cow position:chr29:4423262-4423495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):166, 33

               
               
               Conread position:253-468
               
               
               Cow position:chr29:17804717-17804504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):165, 61

               
               
               Conread position:254-468
               
               
               Cow position:chr29:23825026-23825241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:166
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):164, 79

               
               
               Conread position:254-468
               
               
               Cow position:chr29:32197880-32197666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):164, 82

               
               
               Conread position:254-674
               
               
               Cow position:chr29:16609936-16609501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 277

               
               
               Conread position:254-675
               
               
               Cow position:chr29:36586755-36586340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:286
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):85, 109

               
               
               Conread position:254-678
               
               
               Cow position:chr29:2744083-2744513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 98

               
               
               Conread position:257-468
               
               
               Cow position:chr29:40791480-40791279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:257-476
               
               
               Cow position:chr29:18556850-18556634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):153, 17

               
               
               Conread position:257-492
               
               
               Cow position:chr29:43544422-43544657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):177, 76

               
               
               Conread position:257-516
               
               
               Cow position:chr29:30548956-30548694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):69, 16

               
               
               Conread position:257-673
               
               
               Cow position:chr29:12783772-12784191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 128

               
               
               Conread position:257-673
               
               
               Cow position:chr29:25475116-25474671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 178

               
               
               Conread position:257-674
               
               
               Cow position:chr29:13639186-13639604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 48

               
               
               Conread position:258-450
               
               
               Cow position:chr29:4053162-4053353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):157, 66

               
               
               Conread position:258-468
               
               
               Cow position:chr29:5769973-5769762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):148, 49

               
               
               Conread position:258-469
               
               
               Cow position:chr29:44684279-44684071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):157, 134

               
               
               Conread position:259-462
               
               
               Cow position:chr29:22723777-22723576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):155, 14

               
               
               Conread position:259-503
               
               
               Cow position:chr29:36632679-36632928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):63, 215

               
               
               Conread position:259-559
               
               
               Cow position:chr29:34358797-34359106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:224
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):48, 15

               
               
               Conread position:259-590
               
               
               Cow position:chr29:17154943-17154610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:253
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):156, 61

               
               
               Conread position:261-577
               
               
               Cow position:chr29:24046177-24045846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):79, 102

               
               
               Conread position:262-412
               
               
               Cow position:chr29:28257320-28257168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:264-506
               
               
               Cow position:chr29:40633829-40633577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):55, 73

               
               
               Conread position:264-667
               
               
               Cow position:chr29:8669531-8669125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 108

               
               
               Conread position:268-512
               
               
               Cow position:chr29:38347855-38348106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):58, 102

               
               
               Conread position:268-673
               
               
               Cow position:chr29:25088915-25088517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 135

               
               
               Conread position:271-415
               
               
               Cow position:chr29:34688741-34688882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:271-670
               
               
               Cow position:chr29:86835-87253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 88

               
               
               Conread position:273-670
               
               
               Cow position:chr29:45005458-45005852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 22

               
               
               Conread position:279-674
               
               
               Cow position:chr29:109841-109472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 48

               
               
               Conread position:289-634
               
               
               Cow position:chr29:27589072-27588722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:244
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):128, 44

               
               
               Conread position:295-636
               
               
               Cow position:chr29:11053719-11054053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:251
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):129, 21

               
               
               Conread position:296-526
               
               
               Cow position:chr29:31814087-31813860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):18, 135

               
               
               Conread position:301-592
               
               
               Cow position:chr29:26416490-26416201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):25, 125

               
               
               Conread position:301-673
               
               
               Cow position:chr29:7966384-7966010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 162

               
               
               Conread position:302-659
               
               
               Cow position:chr29:26290450-26290805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):24, 46

               
               
               Conread position:302-678
               
               
               Cow position:chr29:19907493-19907115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:257
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):14, 53

               
               
               Conread position:303-663
               
               
               Cow position:chr29:29512002-29512364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:241
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):17, 163

               
               
               Conread position:303-675
               
               
               Cow position:chr29:1557066-1556694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 31

               
               
               Conread position:304-671
               
               
               Cow position:chr29:19339137-19338745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 146

               
               
               Conread position:307-432
               
               
               Cow position:chr29:18579708-18579830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:307-512
               
               
               Cow position:chr29:7103693-7103480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):18, 120

               
               
               Conread position:307-657
               
               
               Cow position:chr29:28166091-28166438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 26

               
               
               Conread position:308-521
               
               
               Cow position:chr29:40874142-40873924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):109, 126

               
               
               Conread position:308-580
               
               
               Cow position:chr29:11397795-11398070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):121, 148

               
               
               Conread position:310-433
               
               
               Cow position:chr29:8190072-8190197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):103, 23

               
               
               Conread position:310-434
               
               
               Cow position:chr29:17022278-17022152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):104, 23

               
               
               Conread position:310-557
               
               
               Cow position:chr29:13373429-13373180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):97, 23

               
               
               Conread position:310-590
               
               
               Cow position:chr29:40959720-40960005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):105, 133

               
               
               Conread position:310-611
               
               
               Cow position:chr29:26559116-26559409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):16, 123

               
               
               Conread position:310-669
               
               
               Cow position:chr29:22175808-22175458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 5

               
               
               Conread position:310-675
               
               
               Cow position:chr29:18085702-18085352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:246
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):28, 125

               
               
               Conread position:311-480
               
               
               Cow position:chr29:34687962-34687792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):103, 22

               
               
               Conread position:311-510
               
               
               Cow position:chr29:5210618-5210413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):105, 26

               
               
               Conread position:311-516
               
               
               Cow position:chr29:13867084-13867291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):104, 10

               
               
               Conread position:311-590
               
               
               Cow position:chr29:11647221-11646940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:209
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):101, 16

               
               
               Conread position:312-672
               
               
               Cow position:chr29:6286035-6286393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 22

               
               
               Conread position:313-617
               
               
               Cow position:chr29:5186366-5186679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 119

               
               
               Conread position:313-670
               
               
               Cow position:chr29:40853055-40852699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 172

               
               
               Conread position:313-673
               
               
               Cow position:chr29:7665888-7666267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:264
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):8, 46

               
               
               Conread position:313-673
               
               
               Cow position:chr29:11705238-11704886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 83

               
               
               Conread position:313-674
               
               
               Cow position:chr29:42771760-42771424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:247
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):154, 20

               
               
               Conread position:314-472
               
               
               Cow position:chr29:21285485-21285325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):15, 71

               
               
               Conread position:314-628
               
               
               Cow position:chr29:32210947-32211251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 19

               
               
               Conread position:314-673
               
               
               Cow position:chr29:17409459-17409093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 20

               
               
               Conread position:315-625
               
               
               Cow position:chr29:39329480-39329786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:225
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):103, 18

               
               
               Conread position:315-673
               
               
               Cow position:chr29:706834-707181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 18

               
               
               Conread position:316-674
               
               
               Cow position:chr29:39567802-39567450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 11

               
               
               Conread position:317-673
               
               
               Cow position:chr29:31926178-31926526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 40

               
               
               Conread position:319-657
               
               
               Cow position:chr29:463531-463874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 122

               
               
               Conread position:319-674
               
               
               Cow position:chr29:6293358-6293705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:260
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):11, 46

               
               
               Conread position:320-581
               
               
               Cow position:chr29:29176499-29176761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):107, 14

               
               
               Conread position:321-654
               
               
               Cow position:chr29:43251048-43251381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:238
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):35, 12

               
               
               Conread position:321-673
               
               
               Cow position:chr29:5947688-5948023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:235
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):95, 61

               
               
               Conread position:321-674
               
               
               Cow position:chr29:25333344-25333691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:256
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):94, 12

               
               
               Conread position:322-675
               
               
               Cow position:chr29:22936387-22936041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:246
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):46, 11

               
               
               Conread position:323-675
               
               
               Cow position:chr29:13615540-13615881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):107, 10

               
               
               Conread position:324-626
               
               
               Cow position:chr29:4334833-4334538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:227
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):51, 59

               
               
               Conread position:327-617
               
               
               Cow position:chr29:10235026-10235310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 13

               
               
               Conread position:327-672
               
               
               Cow position:chr29:356433-356091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 111

               
               
               Conread position:327-673
               
               
               Cow position:chr29:4194016-4194357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):25, 33

               
               
               Conread position:327-673
               
               
               Cow position:chr29:6015238-6014867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:260
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):93, 143

               
               
               Conread position:328-667
               
               
               Cow position:chr29:43496151-43495829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:237
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):17, 80

               
               
               Conread position:328-672
               
               
               Cow position:chr29:10156195-10156525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:246
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):146, 50

               
               
               Conread position:328-673
               
               
               Cow position:chr29:17607527-17607180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 31

               
               
               Conread position:328-673
               
               
               Cow position:chr29:20903179-20903524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 96

               
               
               Conread position:328-674
               
               
               Cow position:chr29:36217223-36216880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 86

               
               
               Conread position:328-674
               
               
               Cow position:chr29:41811479-41811815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 104

               
               
               Conread position:331-557
               
               
               Cow position:chr29:27873709-27873483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):84, 93

               
               
               Conread position:331-666
               
               
               Cow position:chr29:1229715-1229379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 94

               
               
               Conread position:336-517
               
               
               Cow position:chr29:18012661-18012474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:336-673
               
               
               Cow position:chr29:24578966-24578640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:253
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):76, 99

               
               
               Conread position:337-476
               
               
               Cow position:chr29:30918651-30918510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):78, 98

               
               
               Conread position:337-481
               
               
               Cow position:chr29:8686432-8686288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):87, 82

               
               
               Conread position:337-539
               
               
               Cow position:chr29:12625874-12626081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):77, 188

               
               
               Conread position:337-572
               
               
               Cow position:chr29:27329994-27329753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):76, 16

               
               
               Conread position:337-665
               
               
               Cow position:chr29:19821385-19821068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):82, 69

               
               
               Conread position:337-673
               
               
               Cow position:chr29:26615615-26615961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 190

               
               
               Conread position:337-673
               
               
               Cow position:chr29:32290711-32290366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:248
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):80, 98

               
               
               Conread position:338-673
               
               
               Cow position:chr29:5098665-5098998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 97

               
               
               Conread position:338-673
               
               
               Cow position:chr29:28868744-28868396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 100

               
               
               Conread position:339-671
               
               
               Cow position:chr29:2984990-2984650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 55

               
               
               Conread position:344-673
               
               
               Cow position:chr29:23983860-23984199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 91

               
               
               Conread position:346-671
               
               
               Cow position:chr29:26319259-26318957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):5, 19

               
               
               Conread position:348-629
               
               
               Cow position:chr29:30188261-30188533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):130, 76

               
               
               Conread position:349-472
               
               
               Cow position:chr29:40903265-40903140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):66, 75

               
               
               Conread position:354-670
               
               
               Cow position:chr29:94484-94782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:232
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):183, 45

               
               
               Conread position:355-609
               
               
               Cow position:chr29:44682019-44682273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):5, 84

               
               
               Conread position:355-674
               
               
               Cow position:chr29:868859-868535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 80

               
               
               Conread position:358-503
               
               
               Cow position:chr29:36830439-36830293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):57, 66

               
               
               Conread position:359-606
               
               
               Cow position:chr29:29942647-29942906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:359-634
               
               
               Cow position:chr29:3100187-3100459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:198
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):71, 111

               
               
               Conread position:359-673
               
               
               Cow position:chr29:29588846-29589153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):58, 66

               
               
               Conread position:363-673
               
               
               Cow position:chr29:17668563-17668259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:225
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):118, 52

               
               
               Conread position:364-671
               
               
               Cow position:chr29:14615188-14615492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:222
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):54, 61

               
               
               Conread position:364-672
               
               
               Cow position:chr29:24103466-24103784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 134

               
               
               Conread position:364-673
               
               
               Cow position:chr29:40166319-40166006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:227
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):50, 66

               
               
               Conread position:367-645
               
               
               Cow position:chr29:27618951-27618669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):63, 22

               
               
               Conread position:367-667
               
               
               Cow position:chr29:29975110-29974811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 72

               
               
               Conread position:368-589
               
               
               Cow position:chr29:29795311-29795544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):62, 94

               
               
               Conread position:372-657
               
               
               Cow position:chr29:35485313-35485024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):53, 47

               
               
               Conread position:373-675
               
               
               Cow position:chr29:1306794-1307102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):57, 68

               
               
               Conread position:375-673
               
               
               Cow position:chr29:36183345-36183039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:222
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):41, 63

               
               
               Conread position:375-674
               
               
               Cow position:chr29:2071507-2071806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:227
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):48, 148

               
               
               Conread position:384-676
               
               
               Cow position:chr29:18735584-18735882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):32, 42

               
               
               Conread position:390-675
               
               
               Cow position:chr29:19792227-19792518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):40, 89

               
               
               Conread position:395-674
               
               
               Cow position:chr29:12004718-12005002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:210
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):29, 24

               
               
               Conread position:396-597
               
               
               Cow position:chr29:1124698-1124491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):22, 42

               
               
               Conread position:407-673
               
               
               Cow position:chr29:9685970-9686237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):11, 30

               
               
               Conread position:408-620
               
               
               Cow position:chr29:17301565-17301341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):16, 11

               
               
               Conread position:415-675
               
               
               Cow position:chr29:11685030-11684774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):15, 9

               
               
               Conread position:416-659
               
               
               Cow position:chr29:2533081-2532839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):14, 8

               
               
               Conread position:416-673
               
               
               Cow position:chr29:4328438-4328198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):56, 19

               
               
               Conread position:417-673
               
               
               Cow position:chr29:44901685-44901938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):110, 14

               
               
               Conread position:417-675
               
               
               Cow position:chr29:20178115-20178363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):131, 11

               
               
               Conread position:418-572
               
               
               Cow position:chr29:18579992-18580154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):48, 17

               
               
               Conread position:425-595
               
               
               Cow position:chr29:19186751-19186587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):129, 11

               
               
               Conread position:434-605
               
               
               Cow position:chr29:456785-456966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:434-672
               
               
               Cow position:chr29:7040845-7041070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:183
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:434-673
               
               
               Cow position:chr29:11696533-11696298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):106, 146

               
               
               Conread position:439-628
               
               
               Cow position:chr29:25432397-25432211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):46, 92

               
               
               Conread position:439-673
               
               
               Cow position:chr29:16757053-16756818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):84, 41

               
               
               Conread position:439-673
               
               
               Cow position:chr29:37292777-37292541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):24, 42

               
               
               Conread position:459-675
               
               
               Cow position:chr29:5919343-5919563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):22, 61

               
               
               Conread position:162-539
               
               
               Cow position:chr3:48900072-48900462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 24

               
               
               Conread position:162-665
               
               
               Cow position:chr3:5365920-5365436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):257, 123

               
               
               Conread position:162-675
               
               
               Cow position:chr3:72777479-72776980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:343
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):268, 32

               
               
               Conread position:163-410
               
               
               Cow position:chr3:26393050-26393293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):29, 23

               
               
               Conread position:163-605
               
               
               Cow position:chr3:76267720-76268176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 43

               
               
               Conread position:212-485
               
               
               Cow position:chr3:84174507-84174231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):97, 7

               
               
               Conread position:217-501
               
               
               Cow position:chr3:11640931-11640641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):111, 35

               
               
               Conread position:217-673
               
               
               Cow position:chr3:68303517-68303070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 35

               
               
               Conread position:219-453
               
               
               Cow position:chr3:8813901-8814150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):41, 219

               
               
               Conread position:223-673
               
               
               Cow position:chr3:28908022-28908453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 70

               
               
               Conread position:224-427
               
               
               Cow position:chr3:47198928-47199137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):21, 52

               
               
               Conread position:226-674
               
               
               Cow position:chr3:13329601-13330032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 60

               
               
               Conread position:231-492
               
               
               Cow position:chr3:48477859-48478110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):184, 25

               
               
               Conread position:233-410
               
               
               Cow position:chr3:43895879-43896053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:233-422
               
               
               Cow position:chr3:25735721-25735912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):67, 12

               
               
               Conread position:233-481
               
               
               Cow position:chr3:33002568-33002327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):133, 16

               
               
               Conread position:233-541
               
               
               Cow position:chr3:10841999-10841688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):93, 20

               
               
               Conread position:233-658
               
               
               Cow position:chr3:53222195-53221771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 19

               
               
               Conread position:233-673
               
               
               Cow position:chr3:2518357-2518795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:300
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):105, 53

               
               
               Conread position:233-673
               
               
               Cow position:chr3:8393523-8393088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 28

               
               
               Conread position:234-382
               
               
               Cow position:chr3:24370575-24370436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):9, 37

               
               
               Conread position:234-387
               
               
               Cow position:chr3:5821268-5821423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):14, 102

               
               
               Conread position:234-388
               
               
               Cow position:chr3:18764287-18764130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):89, 15

               
               
               Conread position:234-397
               
               
               Cow position:chr3:621623-621454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):75, 15

               
               
               Conread position:234-399
               
               
               Cow position:chr3:44725050-44724879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):39, 15

               
               
               Conread position:234-402
               
               
               Cow position:chr3:2637128-2636964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:234-403
               
               
               Cow position:chr3:49787739-49787572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:234-406
               
               
               Cow position:chr3:18471486-18471312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:234-410
               
               
               Cow position:chr3:29234496-29234674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):95, 18

               
               
               Conread position:234-411
               
               
               Cow position:chr3:19611170-19611346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:234-412
               
               
               Cow position:chr3:22868532-22868715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):9, 104

               
               
               Conread position:234-412
               
               
               Cow position:chr3:24774826-24774658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):9, 41

               
               
               Conread position:234-412
               
               
               Cow position:chr3:41510762-41510581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:234-412
               
               
               Cow position:chr3:74050522-74050697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):9, 77

               
               
               Conread position:234-419
               
               
               Cow position:chr3:19641248-19641057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):72, 177

               
               
               Conread position:234-422
               
               
               Cow position:chr3:25702149-25702348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):66, 15

               
               
               Conread position:234-422
               
               
               Cow position:chr3:44534352-44534539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):90, 19

               
               
               Conread position:234-422
               
               
               Cow position:chr3:58101857-58101673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):181, 18

               
               
               Conread position:234-422
               
               
               Cow position:chr3:61023839-61024029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):94, 17

               
               
               Conread position:234-422
               
               
               Cow position:chr3:62789767-62789960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:234-422
               
               
               Cow position:chr3:78258568-78258759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):77, 18

               
               
               Conread position:234-422
               
               
               Cow position:chr3:83672038-83671851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):90, 96

               
               
               Conread position:234-452
               
               
               Cow position:chr3:44960834-44961041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):8, 53

               
               
               Conread position:234-458
               
               
               Cow position:chr3:22888831-22889060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):66, 50

               
               
               Conread position:234-461
               
               
               Cow position:chr3:59920225-59919986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):9, 205

               
               
               Conread position:234-463
               
               
               Cow position:chr3:4549200-4548979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):180, 42

               
               
               Conread position:234-464
               
               
               Cow position:chr3:29334228-29334465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):92, 18

               
               
               Conread position:234-464
               
               
               Cow position:chr3:49996535-49996772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):92, 19

               
               
               Conread position:234-468
               
               
               Cow position:chr3:49344876-49344640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):8, 34

               
               
               Conread position:234-474
               
               
               Cow position:chr3:67626175-67626403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):183, 15

               
               
               Conread position:234-474
               
               
               Cow position:chr3:74644744-74644498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:234-477
               
               
               Cow position:chr3:63845123-63844870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):91, 120

               
               
               Conread position:234-478
               
               
               Cow position:chr3:35075054-35074816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):181, 15

               
               
               Conread position:234-479
               
               
               Cow position:chr3:12090860-12090606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):79, 149

               
               
               Conread position:234-499
               
               
               Cow position:chr3:19682890-19682607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):9, 105

               
               
               Conread position:234-504
               
               
               Cow position:chr3:53083801-53084074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):9, 23

               
               
               Conread position:234-512
               
               
               Cow position:chr3:75608671-75608399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):181, 89

               
               
               Conread position:234-528
               
               
               Cow position:chr3:5696546-5696842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):86, 63

               
               
               Conread position:234-528
               
               
               Cow position:chr3:15443543-15443842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 203

               
               
               Conread position:234-539
               
               
               Cow position:chr3:59040751-59040443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):92, 12

               
               
               Conread position:234-546
               
               
               Cow position:chr3:42796336-42796640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):91, 14

               
               
               Conread position:234-577
               
               
               Cow position:chr3:68616156-68616491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):241, 13

               
               
               Conread position:234-580
               
               
               Cow position:chr3:60264538-60264884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:249
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):9, 29

               
               
               Conread position:234-583
               
               
               Cow position:chr3:23920244-23920602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):94, 19

               
               
               Conread position:234-590
               
               
               Cow position:chr3:70761939-70762302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 95

               
               
               Conread position:234-595
               
               
               Cow position:chr3:54506890-54506525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 100

               
               
               Conread position:234-628
               
               
               Cow position:chr3:4319901-4319497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 19

               
               
               Conread position:234-630
               
               
               Cow position:chr3:38864301-38863902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 61

               
               
               Conread position:234-639
               
               
               Cow position:chr3:6182049-6182427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:234-652
               
               
               Cow position:chr3:17134513-17134102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:287
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):190, 20

               
               
               Conread position:234-669
               
               
               Cow position:chr3:74234366-74233941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 35

               
               
               Conread position:234-672
               
               
               Cow position:chr3:14632798-14633244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:301
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):40, 15

               
               
               Conread position:234-672
               
               
               Cow position:chr3:56476856-56476425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 15

               
               
               Conread position:234-673
               
               
               Cow position:chr3:2506293-2506739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 146

               
               
               Conread position:234-673
               
               
               Cow position:chr3:15159214-15158783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 23

               
               
               Conread position:234-673
               
               
               Cow position:chr3:45308109-45307676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:299
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):77, 51

               
               
               Conread position:234-673
               
               
               Cow position:chr3:56583031-56582585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:297
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):61, 120

               
               
               Conread position:234-673
               
               
               Cow position:chr3:80072326-80071858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 215

               
               
               Conread position:234-674
               
               
               Cow position:chr3:23408182-23408602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 16

               
               
               Conread position:234-674
               
               
               Cow position:chr3:53790359-53790804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 51

               
               
               Conread position:234-675
               
               
               Cow position:chr3:17694819-17695266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 130

               
               
               Conread position:234-675
               
               
               Cow position:chr3:18459354-18459781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 39

               
               
               Conread position:234-691
               
               
               Cow position:chr3:74500436-74499947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 14

               
               
               Conread position:235-408
               
               
               Cow position:chr3:77098643-77098814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:235-411
               
               
               Cow position:chr3:3453764-3453585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:235-411
               
               
               Cow position:chr3:42589280-42589104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):84, 14

               
               
               Conread position:235-455
               
               
               Cow position:chr3:10733060-10732850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):179, 51

               
               
               Conread position:235-471
               
               
               Cow position:chr3:11281950-11281710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):91, 17

               
               
               Conread position:235-473
               
               
               Cow position:chr3:23131987-23132227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 14

               
               
               Conread position:235-478
               
               
               Cow position:chr3:15160698-15160459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):183, 14

               
               
               Conread position:235-521
               
               
               Cow position:chr3:57704515-57704216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:221
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):8, 99

               
               
               Conread position:235-534
               
               
               Cow position:chr3:15950736-15951031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:217
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):44, 14

               
               
               Conread position:235-579
               
               
               Cow position:chr3:19586046-19585689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:252
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):103, 168

               
               
               Conread position:235-597
               
               
               Cow position:chr3:24872873-24872533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:269
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):249, 14

               
               
               Conread position:235-602
               
               
               Cow position:chr3:54373677-54374052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:257
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):90, 11

               
               
               Conread position:235-614
               
               
               Cow position:chr3:38828932-38828563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:272
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):198, 17

               
               
               Conread position:235-614
               
               
               Cow position:chr3:53875580-53875962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:255
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):80, 234

               
               
               Conread position:235-655
               
               
               Cow position:chr3:78092329-78092746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 127

               
               
               Conread position:235-673
               
               
               Cow position:chr3:37041598-37041169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 39

               
               
               Conread position:235-673
               
               
               Cow position:chr3:45183639-45184104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:306
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):72, 201

               
               
               Conread position:235-697
               
               
               Cow position:chr3:18393219-18393667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 14

               
               
               Conread position:236-388
               
               
               Cow position:chr3:8540681-8540536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:236-403
               
               
               Cow position:chr3:44594803-44594635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):71, 13

               
               
               Conread position:236-406
               
               
               Cow position:chr3:55105965-55106138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):71, 102

               
               
               Conread position:236-407
               
               
               Cow position:chr3:562608-562784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:236-408
               
               
               Cow position:chr3:32436818-32436647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):43, 11

               
               
               Conread position:236-422
               
               
               Cow position:chr3:986195-986008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):90, 17

               
               
               Conread position:236-422
               
               
               Cow position:chr3:19044588-19044772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):82, 17

               
               
               Conread position:236-422
               
               
               Cow position:chr3:19709284-19709104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):182, 10

               
               
               Conread position:236-431
               
               
               Cow position:chr3:53604564-53604763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):94, 16

               
               
               Conread position:236-431
               
               
               Cow position:chr3:70402818-70402627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):182, 13

               
               
               Conread position:236-433
               
               
               Cow position:chr3:8147342-8147543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):90, 61

               
               
               Conread position:236-455
               
               
               Cow position:chr3:4120190-4120406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):183, 77

               
               
               Conread position:236-465
               
               
               Cow position:chr3:73335459-73335234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):183, 13

               
               
               Conread position:236-467
               
               
               Cow position:chr3:59702355-59702120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):87, 184

               
               
               Conread position:236-473
               
               
               Cow position:chr3:79272396-79272632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):182, 16

               
               
               Conread position:236-477
               
               
               Cow position:chr3:49363287-49363047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):181, 13

               
               
               Conread position:236-478
               
               
               Cow position:chr3:2638114-2637861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):76, 190

               
               
               Conread position:236-500
               
               
               Cow position:chr3:56948915-56949172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:189
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):194, 37

               
               
               Conread position:236-511
               
               
               Cow position:chr3:2648327-2648608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):81, 209

               
               
               Conread position:236-520
               
               
               Cow position:chr3:22165235-22165523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 13

               
               
               Conread position:236-527
               
               
               Cow position:chr3:21866858-21867149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):90, 16

               
               
               Conread position:236-602
               
               
               Cow position:chr3:45667162-45667543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:263
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):90, 70

               
               
               Conread position:236-605
               
               
               Cow position:chr3:74754495-74754134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:254
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):178, 13

               
               
               Conread position:236-611
               
               
               Cow position:chr3:38035407-38035792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:267
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):90, 126

               
               
               Conread position:236-665
               
               
               Cow position:chr3:61224568-61224985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:294
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):181, 99

               
               
               Conread position:236-671
               
               
               Cow position:chr3:54781812-54782266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 124

               
               
               Conread position:236-671
               
               
               Cow position:chr3:66884847-66885294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 173

               
               
               Conread position:236-673
               
               
               Cow position:chr3:15228661-15229077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 13

               
               
               Conread position:236-673
               
               
               Cow position:chr3:31309174-31309613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 16

               
               
               Conread position:236-673
               
               
               Cow position:chr3:51233922-51234354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 85

               
               
               Conread position:236-673
               
               
               Cow position:chr3:51578143-51578579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 116

               
               
               Conread position:236-673
               
               
               Cow position:chr3:78945641-78946097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 203

               
               
               Conread position:236-674
               
               
               Cow position:chr3:20802460-20802889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):242, 17

               
               
               Conread position:236-674
               
               
               Cow position:chr3:53910286-53909853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 16

               
               
               Conread position:236-675
               
               
               Cow position:chr3:14465535-14465964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 16

               
               
               Conread position:236-675
               
               
               Cow position:chr3:32585333-32584898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 17

               
               
               Conread position:237-392
               
               
               Cow position:chr3:44218947-44218790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):91, 16

               
               
               Conread position:237-419
               
               
               Cow position:chr3:635357-635174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):89, 15

               
               
               Conread position:237-441
               
               
               Cow position:chr3:64909916-64910120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):98, 12

               
               
               Conread position:237-539
               
               
               Cow position:chr3:72342427-72342120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):89, 15

               
               
               Conread position:237-539
               
               
               Cow position:chr3:73237363-73237070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):181, 48

               
               
               Conread position:237-550
               
               
               Cow position:chr3:20993975-20993677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):178, 48

               
               
               Conread position:237-587
               
               
               Cow position:chr3:19793077-19792716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:265
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):113, 36

               
               
               Conread position:237-590
               
               
               Cow position:chr3:75107953-75107615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:241
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):6, 79

               
               
               Conread position:237-673
               
               
               Cow position:chr3:2675212-2674771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 201

               
               
               Conread position:237-673
               
               
               Cow position:chr3:39969684-39970130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 12

               
               
               Conread position:237-675
               
               
               Cow position:chr3:14553052-14552617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 72

               
               
               Conread position:237-675
               
               
               Cow position:chr3:18067310-18066874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 37

               
               
               Conread position:238-422
               
               
               Cow position:chr3:7381653-7381837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):81, 57

               
               
               Conread position:238-422
               
               
               Cow position:chr3:15859203-15859385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):103, 81

               
               
               Conread position:238-422
               
               
               Cow position:chr3:37641505-37641319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):88, 100

               
               
               Conread position:238-422
               
               
               Cow position:chr3:43388947-43389134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):88, 14

               
               
               Conread position:238-422
               
               
               Cow position:chr3:55730288-55730475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):88, 14

               
               
               Conread position:238-436
               
               
               Cow position:chr3:79893318-79893516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):80, 14

               
               
               Conread position:238-457
               
               
               Cow position:chr3:54905786-54905576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):9, 48

               
               
               Conread position:238-469
               
               
               Cow position:chr3:39605835-39606076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):63, 15

               
               
               Conread position:238-470
               
               
               Cow position:chr3:27082863-27083106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):81, 9

               
               
               Conread position:238-473
               
               
               Cow position:chr3:83889427-83889188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):88, 16

               
               
               Conread position:238-495
               
               
               Cow position:chr3:59299754-59299495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):11, 83

               
               
               Conread position:238-504
               
               
               Cow position:chr3:69785442-69785716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):63, 11

               
               
               Conread position:238-510
               
               
               Cow position:chr3:75777890-75778157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):158, 59

               
               
               Conread position:238-521
               
               
               Cow position:chr3:4268396-4268689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):88, 14

               
               
               Conread position:238-528
               
               
               Cow position:chr3:3656694-3656398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:220
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):88, 35

               
               
               Conread position:238-535
               
               
               Cow position:chr3:14194011-14194300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:222
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):174, 22

               
               
               Conread position:238-539
               
               
               Cow position:chr3:35055798-35056103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:222
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):19, 15

               
               
               Conread position:238-558
               
               
               Cow position:chr3:58527555-58527256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:238-567
               
               
               Cow position:chr3:77582285-77581952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 176

               
               
               Conread position:238-588
               
               
               Cow position:chr3:15153867-15153513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 81

               
               
               Conread position:238-596
               
               
               Cow position:chr3:53318588-53318218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:259
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):82, 15

               
               
               Conread position:238-605
               
               
               Cow position:chr3:67698457-67698085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):99, 15

               
               
               Conread position:238-627
               
               
               Cow position:chr3:27696786-27697195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:288
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):54, 14

               
               
               Conread position:238-667
               
               
               Cow position:chr3:5044631-5045062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:293
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):102, 125

               
               
               Conread position:238-671
               
               
               Cow position:chr3:55189572-55190007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 11

               
               
               Conread position:238-671
               
               
               Cow position:chr3:55970693-55970248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 9

               
               
               Conread position:238-672
               
               
               Cow position:chr3:72474100-72473650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:303
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):88, 17

               
               
               Conread position:238-673
               
               
               Cow position:chr3:7763836-7763406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 15

               
               
               Conread position:238-673
               
               
               Cow position:chr3:14725494-14725039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:295
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):88, 14

               
               
               Conread position:238-673
               
               
               Cow position:chr3:76172504-76172920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:300
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):90, 15

               
               
               Conread position:238-673
               
               
               Cow position:chr3:80973529-80973095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:275
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):180, 14

               
               
               Conread position:238-674
               
               
               Cow position:chr3:14601521-14601973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 207

               
               
               Conread position:238-675
               
               
               Cow position:chr3:1830396-1830823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 14

               
               
               Conread position:238-675
               
               
               Cow position:chr3:11253986-11254409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:294
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):88, 222

               
               
               Conread position:238-675
               
               
               Cow position:chr3:17456089-17456529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 14

               
               
               Conread position:238-675
               
               
               Cow position:chr3:70676409-70675960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:304
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):88, 14

               
               
               Conread position:238-686
               
               
               Cow position:chr3:57764393-57763951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 39

               
               
               Conread position:238-687
               
               
               Cow position:chr3:58540335-58540806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 115

               
               
               Conread position:239-413
               
               
               Cow position:chr3:63069183-63069362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:239-413
               
               
               Cow position:chr3:67942355-67942532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:239-417
               
               
               Cow position:chr3:46259890-46259710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):87, 120

               
               
               Conread position:239-417
               
               
               Cow position:chr3:83705357-83705537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):80, 166

               
               
               Conread position:239-422
               
               
               Cow position:chr3:41366522-41366716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:239-422
               
               
               Cow position:chr3:59317878-59317696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):176, 128

               
               
               Conread position:239-422
               
               
               Cow position:chr3:62186336-62186145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:239-431
               
               
               Cow position:chr3:75966604-75966798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):113, 88

               
               
               Conread position:239-433
               
               
               Cow position:chr3:65308275-65308471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):75, 134

               
               
               Conread position:239-441
               
               
               Cow position:chr3:45314530-45314318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):76, 208

               
               
               Conread position:239-446
               
               
               Cow position:chr3:52845733-52845520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):173, 95

               
               
               Conread position:239-449
               
               
               Cow position:chr3:44960123-44959908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:239-450
               
               
               Cow position:chr3:18831596-18831386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):149, 82

               
               
               Conread position:239-453
               
               
               Cow position:chr3:84137636-84137853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):85, 96

               
               
               Conread position:239-455
               
               
               Cow position:chr3:6728143-6728370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:239-457
               
               
               Cow position:chr3:35624365-35624586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):79, 121

               
               
               Conread position:239-468
               
               
               Cow position:chr3:3275773-3275543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):61, 47

               
               
               Conread position:239-468
               
               
               Cow position:chr3:68004527-68004755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):13, 36

               
               
               Conread position:239-474
               
               
               Cow position:chr3:79271531-79271771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):87, 65

               
               
               Conread position:239-480
               
               
               Cow position:chr3:1011670-1011420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):87, 114

               
               
               Conread position:239-521
               
               
               Cow position:chr3:18059882-18059595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 258

               
               
               Conread position:239-534
               
               
               Cow position:chr3:58134506-58134807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):98, 123

               
               
               Conread position:239-536
               
               
               Cow position:chr3:26992751-26992445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):89, 288

               
               
               Conread position:239-538
               
               
               Cow position:chr3:48468354-48468059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):87, 224

               
               
               Conread position:239-565
               
               
               Cow position:chr3:73299245-73298939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:242
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):11, 32

               
               
               Conread position:239-580
               
               
               Cow position:chr3:32787640-32787291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):94, 65

               
               
               Conread position:239-584
               
               
               Cow position:chr3:69144874-69144533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:234
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):98, 124

               
               
               Conread position:239-590
               
               
               Cow position:chr3:68587197-68586844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:255
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):19, 81

               
               
               Conread position:239-613
               
               
               Cow position:chr3:1788117-1787745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):63, 58

               
               
               Conread position:239-620
               
               
               Cow position:chr3:55712609-55712220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 45

               
               
               Conread position:239-626
               
               
               Cow position:chr3:55318720-55319117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 115

               
               
               Conread position:239-629
               
               
               Cow position:chr3:20841701-20842074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 57

               
               
               Conread position:239-666
               
               
               Cow position:chr3:52651902-52652325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 179

               
               
               Conread position:239-667
               
               
               Cow position:chr3:210500-210071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 188

               
               
               Conread position:239-669
               
               
               Cow position:chr3:29359986-29360392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:300
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):229, 45

               
               
               Conread position:239-670
               
               
               Cow position:chr3:48253057-48252638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:303
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):179, 71

               
               
               Conread position:239-672
               
               
               Cow position:chr3:3556726-3556287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 228

               
               
               Conread position:239-672
               
               
               Cow position:chr3:49482536-49482963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 37

               
               
               Conread position:239-672
               
               
               Cow position:chr3:53428740-53429147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:287
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:239-672
               
               
               Cow position:chr3:80740731-80740315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 34

               
               
               Conread position:239-673
               
               
               Cow position:chr3:2392791-2393224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 88

               
               
               Conread position:239-673
               
               
               Cow position:chr3:21081202-21081643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:309
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):87, 34

               
               
               Conread position:239-673
               
               
               Cow position:chr3:30180261-30179825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 85

               
               
               Conread position:239-673
               
               
               Cow position:chr3:53739004-53739448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 99

               
               
               Conread position:239-673
               
               
               Cow position:chr3:79093880-79094328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:317
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):10, 37

               
               
               Conread position:239-674
               
               
               Cow position:chr3:50768857-50768419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 192

               
               
               Conread position:239-675
               
               
               Cow position:chr3:31055835-31056262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:290
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):94, 38

               
               
               Conread position:239-675
               
               
               Cow position:chr3:49460748-49461197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 121

               
               
               Conread position:239-675
               
               
               Cow position:chr3:54049851-54050279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:291
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):94, 182

               
               
               Conread position:240-382
               
               
               Cow position:chr3:25290020-25289879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:240-382
               
               
               Cow position:chr3:27212495-27212356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:240-384
               
               
               Cow position:chr3:53249662-53249521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:240-406
               
               
               Cow position:chr3:40957951-40958116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):52, 63

               
               
               Conread position:240-408
               
               
               Cow position:chr3:22903581-22903744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:240-413
               
               
               Cow position:chr3:12637682-12637513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):10, 74

               
               
               Conread position:240-413
               
               
               Cow position:chr3:21694403-21694228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):78, 12

               
               
               Conread position:240-417
               
               
               Cow position:chr3:18699932-18700111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):85, 13

               
               
               Conread position:240-417
               
               
               Cow position:chr3:21959842-21959659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):84, 57

               
               
               Conread position:240-417
               
               
               Cow position:chr3:27246790-27246959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:240-417
               
               
               Cow position:chr3:73589589-73589771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):54, 100

               
               
               Conread position:240-417
               
               
               Cow position:chr3:77654097-77653928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:240-420
               
               
               Cow position:chr3:60186330-60186142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):18, 159

               
               
               Conread position:240-421
               
               
               Cow position:chr3:12899768-12899945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):10, 67

               
               
               Conread position:240-422
               
               
               Cow position:chr3:23640516-23640337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):175, 93

               
               
               Conread position:240-422
               
               
               Cow position:chr3:54557843-54557668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):175, 66

               
               
               Conread position:240-422
               
               
               Cow position:chr3:78071615-78071797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):175, 84

               
               
               Conread position:240-431
               
               
               Cow position:chr3:23037331-23037524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):76, 51

               
               
               Conread position:240-431
               
               
               Cow position:chr3:39812236-39812034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):86, 33

               
               
               Conread position:240-436
               
               
               Cow position:chr3:14211810-14212002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:240-444
               
               
               Cow position:chr3:80541399-80541191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):10, 104

               
               
               Conread position:240-455
               
               
               Cow position:chr3:41863799-41863584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):179, 84

               
               
               Conread position:240-458
               
               
               Cow position:chr3:28896844-28897063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):60, 45

               
               
               Conread position:240-460
               
               
               Cow position:chr3:52457086-52456873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):70, 35

               
               
               Conread position:240-460
               
               
               Cow position:chr3:82366306-82366084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):75, 95

               
               
               Conread position:240-463
               
               
               Cow position:chr3:5040126-5040355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):76, 173

               
               
               Conread position:240-466
               
               
               Cow position:chr3:5305980-5305747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):56, 200

               
               
               Conread position:240-468
               
               
               Cow position:chr3:69650721-69650942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):72, 34

               
               
               Conread position:240-475
               
               
               Cow position:chr3:31804593-31804828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):170, 70

               
               
               Conread position:240-478
               
               
               Cow position:chr3:39247855-39248089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):145, 33

               
               
               Conread position:240-486
               
               
               Cow position:chr3:54067971-54067721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):61, 33

               
               
               Conread position:240-499
               
               
               Cow position:chr3:18001364-18001116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):11, 37

               
               
               Conread position:240-499
               
               
               Cow position:chr3:36160024-36160280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):89, 12

               
               
               Conread position:240-503
               
               
               Cow position:chr3:53703770-53704055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):70, 123

               
               
               Conread position:240-504
               
               
               Cow position:chr3:23804679-23804427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):227, 33

               
               
               Conread position:240-504
               
               
               Cow position:chr3:51609005-51609276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):10, 183

               
               
               Conread position:240-519
               
               
               Cow position:chr3:44625002-44625268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):91, 36

               
               
               Conread position:240-521
               
               
               Cow position:chr3:1037205-1036919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):61, 244

               
               
               Conread position:240-535
               
               
               Cow position:chr3:22221503-22221199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:226
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):178, 88

               
               
               Conread position:240-535
               
               
               Cow position:chr3:56678169-56678474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):22, 120

               
               
               Conread position:240-539
               
               
               Cow position:chr3:18426523-18426824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):127, 94

               
               
               Conread position:240-539
               
               
               Cow position:chr3:70333792-70334088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):87, 110

               
               
               Conread position:240-539
               
               
               Cow position:chr3:76156163-76155863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 94

               
               
               Conread position:240-552
               
               
               Cow position:chr3:47417394-47417707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:225
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):86, 116

               
               
               Conread position:240-573
               
               
               Cow position:chr3:58764909-58765239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 67

               
               
               Conread position:240-579
               
               
               Cow position:chr3:54100536-54100891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:256
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):77, 212

               
               
               Conread position:240-592
               
               
               Cow position:chr3:4050358-4050014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:257
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):202, 51

               
               
               Conread position:240-595
               
               
               Cow position:chr3:15751546-15751906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:261
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):185, 34

               
               
               Conread position:240-601
               
               
               Cow position:chr3:59597349-59596995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 9

               
               
               Conread position:240-607
               
               
               Cow position:chr3:57274236-57273870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 45

               
               
               Conread position:240-613
               
               
               Cow position:chr3:18687078-18686704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 80

               
               
               Conread position:240-617
               
               
               Cow position:chr3:1517335-1517717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:257
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):12, 98

               
               
               Conread position:240-628
               
               
               Cow position:chr3:7662034-7661640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 178

               
               
               Conread position:240-630
               
               
               Cow position:chr3:25477969-25477597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):309, 85

               
               
               Conread position:240-630
               
               
               Cow position:chr3:76713135-76713537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 99

               
               
               Conread position:240-638
               
               
               Cow position:chr3:83215446-83215030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 44

               
               
               Conread position:240-645
               
               
               Cow position:chr3:59333936-59333537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:281
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):18, 42

               
               
               Conread position:240-657
               
               
               Cow position:chr3:12705370-12705801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 79

               
               
               Conread position:240-663
               
               
               Cow position:chr3:15051775-15052193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 97

               
               
               Conread position:240-663
               
               
               Cow position:chr3:26904276-26903867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 44

               
               
               Conread position:240-665
               
               
               Cow position:chr3:15752447-15752878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 9

               
               
               Conread position:240-670
               
               
               Cow position:chr3:16752077-16752508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 169

               
               
               Conread position:240-671
               
               
               Cow position:chr3:3032586-3032139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 45

               
               
               Conread position:240-671
               
               
               Cow position:chr3:13353541-13353101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 195

               
               
               Conread position:240-672
               
               
               Cow position:chr3:5374486-5374076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):245, 36

               
               
               Conread position:240-672
               
               
               Cow position:chr3:23168890-23169327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 34

               
               
               Conread position:240-673
               
               
               Cow position:chr3:3985493-3985072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):287, 45

               
               
               Conread position:240-673
               
               
               Cow position:chr3:45882076-45881651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 225

               
               
               Conread position:240-673
               
               
               Cow position:chr3:59474297-59473854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 67

               
               
               Conread position:240-673
               
               
               Cow position:chr3:64280761-64281194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 79

               
               
               Conread position:240-673
               
               
               Cow position:chr3:71496952-71497403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 209

               
               
               Conread position:240-673
               
               
               Cow position:chr3:73467803-73467361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 33

               
               
               Conread position:240-673
               
               
               Cow position:chr3:77365115-77365552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 27

               
               
               Conread position:240-673
               
               
               Cow position:chr3:78077367-78076931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 203

               
               
               Conread position:240-673
               
               
               Cow position:chr3:83441716-83442138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:281
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):62, 120

               
               
               Conread position:240-674
               
               
               Cow position:chr3:54435145-54434714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 94

               
               
               Conread position:240-674
               
               
               Cow position:chr3:54739723-54740131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 39

               
               
               Conread position:240-674
               
               
               Cow position:chr3:54946298-54945865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 28

               
               
               Conread position:240-674
               
               
               Cow position:chr3:55734134-55733683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:289
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):86, 13

               
               
               Conread position:240-674
               
               
               Cow position:chr3:65058876-65058442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 184

               
               
               Conread position:240-674
               
               
               Cow position:chr3:65413089-65413535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 110

               
               
               Conread position:240-674
               
               
               Cow position:chr3:73764038-73764455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):244, 44

               
               
               Conread position:240-674
               
               
               Cow position:chr3:79884303-79884746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 190

               
               
               Conread position:240-675
               
               
               Cow position:chr3:8061297-8060872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 36

               
               
               Conread position:241-386
               
               
               Cow position:chr3:22078254-22078106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:241-405
               
               
               Cow position:chr3:44782514-44782351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:241-412
               
               
               Cow position:chr3:23818662-23818496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:241-417
               
               
               Cow position:chr3:2016607-2016435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:241-417
               
               
               Cow position:chr3:59681731-59681904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:241-424
               
               
               Cow position:chr3:70333053-70333229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):174, 84

               
               
               Conread position:241-446
               
               
               Cow position:chr3:51150306-51150100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):78, 24

               
               
               Conread position:241-450
               
               
               Cow position:chr3:28902587-28902794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):56, 12

               
               
               Conread position:241-462
               
               
               Cow position:chr3:5703352-5703131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):79, 113

               
               
               Conread position:241-469
               
               
               Cow position:chr3:40212859-40213087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:177
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):105, 84

               
               
               Conread position:241-503
               
               
               Cow position:chr3:31349933-31350194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:196
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):178, 13

               
               
               Conread position:241-521
               
               
               Cow position:chr3:31361599-31361312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:214
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):177, 69

               
               
               Conread position:241-521
               
               
               Cow position:chr3:65019676-65019972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):9, 82

               
               
               Conread position:241-539
               
               
               Cow position:chr3:17331895-17331602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):226, 56

               
               
               Conread position:241-540
               
               
               Cow position:chr3:17235028-17235334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):66, 139

               
               
               Conread position:241-553
               
               
               Cow position:chr3:58317767-58318094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):85, 199

               
               
               Conread position:241-556
               
               
               Cow position:chr3:3649063-3649359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):176, 44

               
               
               Conread position:241-576
               
               
               Cow position:chr3:48072711-48073039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:239
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):173, 9

               
               
               Conread position:241-579
               
               
               Cow position:chr3:48810462-48810805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 208

               
               
               Conread position:241-586
               
               
               Cow position:chr3:55819925-55819572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:257
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):84, 66

               
               
               Conread position:241-588
               
               
               Cow position:chr3:62046847-62046485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 221

               
               
               Conread position:241-624
               
               
               Cow position:chr3:23105189-23105575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 82

               
               
               Conread position:241-625
               
               
               Cow position:chr3:36375361-36375758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 96

               
               
               Conread position:241-638
               
               
               Cow position:chr3:45211481-45211071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 295

               
               
               Conread position:241-672
               
               
               Cow position:chr3:83491256-83490819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 50

               
               
               Conread position:241-673
               
               
               Cow position:chr3:9641731-9641306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 77

               
               
               Conread position:241-673
               
               
               Cow position:chr3:49118855-49119290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:296
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):60, 11

               
               
               Conread position:241-673
               
               
               Cow position:chr3:71231574-71231148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 158

               
               
               Conread position:241-675
               
               
               Cow position:chr3:2025380-2024924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 276

               
               
               Conread position:241-675
               
               
               Cow position:chr3:11987503-11987070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:296
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):183, 7

               
               
               Conread position:242-393
               
               
               Cow position:chr3:75908086-75907935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):34, 75

               
               
               Conread position:242-412
               
               
               Cow position:chr3:26977712-26977539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):133, 31

               
               
               Conread position:242-417
               
               
               Cow position:chr3:76056113-76056285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:242-417
               
               
               Cow position:chr3:81616275-81616453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:242-423
               
               
               Cow position:chr3:82424906-82425086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):164, 11

               
               
               Conread position:242-427
               
               
               Cow position:chr3:59947843-59947655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):46, 36

               
               
               Conread position:242-430
               
               
               Cow position:chr3:73701673-73701488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):146, 16

               
               
               Conread position:242-431
               
               
               Cow position:chr3:50350803-50350986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):146, 65

               
               
               Conread position:242-431
               
               
               Cow position:chr3:84212364-84212549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):41, 79

               
               
               Conread position:242-432
               
               
               Cow position:chr3:80958334-80958526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):84, 153

               
               
               Conread position:242-459
               
               
               Cow position:chr3:15973744-15973522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):82, 10

               
               
               Conread position:242-471
               
               
               Cow position:chr3:76024678-76024452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):60, 31

               
               
               Conread position:242-473
               
               
               Cow position:chr3:71423394-71423609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:242-477
               
               
               Cow position:chr3:76270063-76269830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):171, 78

               
               
               Conread position:242-482
               
               
               Cow position:chr3:71474232-71474472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:186
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):176, 73

               
               
               Conread position:242-503
               
               
               Cow position:chr3:39873533-39873786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):182, 53

               
               
               Conread position:242-503
               
               
               Cow position:chr3:48459154-48459421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):84, 107

               
               
               Conread position:242-512
               
               
               Cow position:chr3:47753412-47753126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):65, 204

               
               
               Conread position:242-520
               
               
               Cow position:chr3:3316633-3316918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:213
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):69, 158

               
               
               Conread position:242-545
               
               
               Cow position:chr3:51403071-51402778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):35, 82

               
               
               Conread position:242-552
               
               
               Cow position:chr3:51033546-51033233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):82, 10

               
               
               Conread position:242-556
               
               
               Cow position:chr3:55177576-55177898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 78

               
               
               Conread position:242-589
               
               
               Cow position:chr3:36418312-36418644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):297, 77

               
               
               Conread position:242-597
               
               
               Cow position:chr3:22232493-22232838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):241, 32

               
               
               Conread position:242-613
               
               
               Cow position:chr3:52419122-52418751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:262
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):59, 183

               
               
               Conread position:242-630
               
               
               Cow position:chr3:70609800-70609407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 47

               
               
               Conread position:242-635
               
               
               Cow position:chr3:67520001-67520401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:287
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):175, 76

               
               
               Conread position:242-650
               
               
               Cow position:chr3:27274702-27274298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 86

               
               
               Conread position:242-663
               
               
               Cow position:chr3:44932687-44932260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 91

               
               
               Conread position:242-670
               
               
               Cow position:chr3:68707847-68708259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):288, 78

               
               
               Conread position:242-670
               
               
               Cow position:chr3:68880956-68881367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):286, 78

               
               
               Conread position:242-672
               
               
               Cow position:chr3:67744466-67744885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 31

               
               
               Conread position:242-673
               
               
               Cow position:chr3:2396620-2397041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):234, 43

               
               
               Conread position:242-673
               
               
               Cow position:chr3:9662994-9663445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 204

               
               
               Conread position:242-673
               
               
               Cow position:chr3:17936672-17937097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 78

               
               
               Conread position:242-673
               
               
               Cow position:chr3:26066162-26065743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 79

               
               
               Conread position:242-673
               
               
               Cow position:chr3:69750560-69750958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 44

               
               
               Conread position:242-673
               
               
               Cow position:chr3:75050448-75050876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:293
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):171, 23

               
               
               Conread position:242-673
               
               
               Cow position:chr3:75480173-75479754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):236, 71

               
               
               Conread position:242-673
               
               
               Cow position:chr3:83454982-83455410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 25

               
               
               Conread position:242-674
               
               
               Cow position:chr3:29813401-29812984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 43

               
               
               Conread position:242-674
               
               
               Cow position:chr3:59605017-59604611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):242, 85

               
               
               Conread position:242-674
               
               
               Cow position:chr3:59649428-59649000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:298
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):87, 29

               
               
               Conread position:242-674
               
               
               Cow position:chr3:75570271-75570701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:320
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):58, 43

               
               
               Conread position:242-674
               
               
               Cow position:chr3:83474929-83474488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 202

               
               
               Conread position:242-686
               
               
               Cow position:chr3:48363244-48362811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):427, 72

               
               
               Conread position:242-687
               
               
               Cow position:chr3:73395290-73394844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 42

               
               
               Conread position:243-464
               
               
               Cow position:chr3:8349397-8349614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):167, 24

               
               
               Conread position:243-521
               
               
               Cow position:chr3:73837544-73837823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):100, 128

               
               
               Conread position:243-557
               
               
               Cow position:chr3:3883646-3883965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):175, 90

               
               
               Conread position:243-649
               
               
               Cow position:chr3:68156901-68156496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 37

               
               
               Conread position:243-673
               
               
               Cow position:chr3:22675933-22676340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:295
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):91, 105

               
               
               Conread position:244-449
               
               
               Cow position:chr3:22924207-22924409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):170, 76

               
               
               Conread position:245-420
               
               
               Cow position:chr3:28323382-28323214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:245-421
               
               
               Cow position:chr3:4518012-4518186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:245-422
               
               
               Cow position:chr3:81400934-81401103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):172, 40

               
               
               Conread position:245-460
               
               
               Cow position:chr3:59828216-59828438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):66, 200

               
               
               Conread position:245-506
               
               
               Cow position:chr3:14547171-14546910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:199
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):173, 83

               
               
               Conread position:245-510
               
               
               Cow position:chr3:66014490-66014220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):21, 177

               
               
               Conread position:245-535
               
               
               Cow position:chr3:17058375-17058661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 92

               
               
               Conread position:245-552
               
               
               Cow position:chr3:3889405-3889703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:235
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):170, 60

               
               
               Conread position:245-670
               
               
               Cow position:chr3:26970983-26970570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 23

               
               
               Conread position:245-673
               
               
               Cow position:chr3:72592-72157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:300
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):177, 74

               
               
               Conread position:245-673
               
               
               Cow position:chr3:23471291-23471726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 62

               
               
               Conread position:245-673
               
               
               Cow position:chr3:53150505-53150069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 91

               
               
               Conread position:245-673
               
               
               Cow position:chr3:60597709-60597290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 65

               
               
               Conread position:245-673
               
               
               Cow position:chr3:70896211-70895788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 87

               
               
               Conread position:245-675
               
               
               Cow position:chr3:74533506-74533088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 79

               
               
               Conread position:246-422
               
               
               Cow position:chr3:56943759-56943932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):171, 28

               
               
               Conread position:246-449
               
               
               Cow position:chr3:46559545-46559749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):182, 98

               
               
               Conread position:246-481
               
               
               Cow position:chr3:81234559-81234325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):182, 88

               
               
               Conread position:246-535
               
               
               Cow position:chr3:21014785-21015081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:215
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):80, 30

               
               
               Conread position:246-539
               
               
               Cow position:chr3:59035214-59034913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):93, 176

               
               
               Conread position:246-663
               
               
               Cow position:chr3:59610548-59610972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):166, 59

               
               
               Conread position:246-673
               
               
               Cow position:chr3:30463005-30463424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 39

               
               
               Conread position:246-673
               
               
               Cow position:chr3:65237194-65236767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 81

               
               
               Conread position:246-674
               
               
               Cow position:chr3:10958073-10958488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 27

               
               
               Conread position:246-687
               
               
               Cow position:chr3:77188611-77188170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:298
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):79, 107

               
               
               Conread position:249-446
               
               
               Cow position:chr3:20021436-20021238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):164, 84

               
               
               Conread position:249-492
               
               
               Cow position:chr3:10668711-10668957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 86

               
               
               Conread position:249-511
               
               
               Cow position:chr3:64196993-64196727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):165, 78

               
               
               Conread position:249-574
               
               
               Cow position:chr3:12978447-12978780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):77, 184

               
               
               Conread position:249-590
               
               
               Cow position:chr3:76922505-76922842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 41

               
               
               Conread position:249-669
               
               
               Cow position:chr3:25755203-25754782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:291
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):68, 168

               
               
               Conread position:249-672
               
               
               Cow position:chr3:54903735-54903311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:293
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):70, 114

               
               
               Conread position:249-673
               
               
               Cow position:chr3:82019674-82020102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 75

               
               
               Conread position:250-539
               
               
               Cow position:chr3:78093226-78093508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):164, 28

               
               
               Conread position:250-552
               
               
               Cow position:chr3:71238643-71238332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):17, 161

               
               
               Conread position:250-673
               
               
               Cow position:chr3:17221966-17222402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 190

               
               
               Conread position:250-673
               
               
               Cow position:chr3:55124118-55124536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 24

               
               
               Conread position:250-673
               
               
               Cow position:chr3:80565132-80564702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 78

               
               
               Conread position:250-674
               
               
               Cow position:chr3:65969341-65968895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 188

               
               
               Conread position:250-675
               
               
               Cow position:chr3:75158522-75158105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 23

               
               
               Conread position:251-417
               
               
               Cow position:chr3:62370223-62370055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):75, 145

               
               
               Conread position:251-426
               
               
               Cow position:chr3:62312964-62312787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):74, 145

               
               
               Conread position:251-449
               
               
               Cow position:chr3:70756473-70756675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:251-673
               
               
               Cow position:chr3:16333970-16333548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 191

               
               
               Conread position:251-673
               
               
               Cow position:chr3:53270999-53270568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 176

               
               
               Conread position:252-601
               
               
               Cow position:chr3:55434496-55434141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):85, 118

               
               
               Conread position:253-521
               
               
               Cow position:chr3:9117198-9116921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):40, 189

               
               
               Conread position:253-674
               
               
               Cow position:chr3:57577860-57577435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 32

               
               
               Conread position:253-674
               
               
               Cow position:chr3:59000599-59001005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):231, 69

               
               
               Conread position:253-675
               
               
               Cow position:chr3:53592522-53592960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 110

               
               
               Conread position:253-683
               
               
               Cow position:chr3:71238314-71237889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 66

               
               
               Conread position:254-422
               
               
               Cow position:chr3:40145630-40145458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:254-476
               
               
               Cow position:chr3:74787588-74787371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):55, 8

               
               
               Conread position:254-518
               
               
               Cow position:chr3:75238623-75238354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:196
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):71, 232

               
               
               Conread position:254-569
               
               
               Cow position:chr3:19793427-19793751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):72, 125

               
               
               Conread position:254-605
               
               
               Cow position:chr3:74079475-74079833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 80

               
               
               Conread position:254-672
               
               
               Cow position:chr3:53046495-53046914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 31

               
               
               Conread position:254-673
               
               
               Cow position:chr3:2036467-2036040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:280
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):161, 80

               
               
               Conread position:254-673
               
               
               Cow position:chr3:26921077-26920639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 12

               
               
               Conread position:254-673
               
               
               Cow position:chr3:69416615-69417046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:285
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):61, 100

               
               
               Conread position:254-674
               
               
               Cow position:chr3:82055965-82056377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:305
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):202, 41

               
               
               Conread position:254-675
               
               
               Cow position:chr3:62998832-62999265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:299
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):153, 20

               
               
               Conread position:254-675
               
               
               Cow position:chr3:66900564-66901002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 13

               
               
               Conread position:255-671
               
               
               Cow position:chr3:68627525-68627931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 136

               
               
               Conread position:257-411
               
               
               Cow position:chr3:5737906-5737757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:257-412
               
               
               Cow position:chr3:17531576-17531733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:257-416
               
               
               Cow position:chr3:5003792-5003634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:257-464
               
               
               Cow position:chr3:23203069-23203280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):71, 117

               
               
               Conread position:257-468
               
               
               Cow position:chr3:3947196-3946985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):54, 12

               
               
               Conread position:257-468
               
               
               Cow position:chr3:39988092-39988289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):159, 69

               
               
               Conread position:257-468
               
               
               Cow position:chr3:72745395-72745616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):61, 186

               
               
               Conread position:257-479
               
               
               Cow position:chr3:9025922-9026149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):20, 135

               
               
               Conread position:257-539
               
               
               Cow position:chr3:13380118-13380411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):160, 64

               
               
               Conread position:257-570
               
               
               Cow position:chr3:79196923-79196598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):68, 248

               
               
               Conread position:257-671
               
               
               Cow position:chr3:7566261-7566675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 67

               
               
               Conread position:257-673
               
               
               Cow position:chr3:78443407-78443821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:272
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):74, 101

               
               
               Conread position:257-675
               
               
               Cow position:chr3:45647826-45647415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 64

               
               
               Conread position:257-678
               
               
               Cow position:chr3:48241767-48241358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):223, 16

               
               
               Conread position:258-468
               
               
               Cow position:chr3:46792542-46792332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):84, 46

               
               
               Conread position:259-392
               
               
               Cow position:chr3:72556923-72556794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):72, 26

               
               
               Conread position:259-417
               
               
               Cow position:chr3:83199671-83199511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:259-668
               
               
               Cow position:chr3:70334534-70334955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 163

               
               
               Conread position:259-672
               
               
               Cow position:chr3:74601270-74600860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:285
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):44, 28

               
               
               Conread position:261-503
               
               
               Cow position:chr3:27976366-27976614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):39, 45

               
               
               Conread position:261-608
               
               
               Cow position:chr3:60265099-60265438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 72

               
               
               Conread position:262-423
               
               
               Cow position:chr3:37851654-37851489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):64, 42

               
               
               Conread position:262-446
               
               
               Cow position:chr3:35239166-35238982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):152, 72

               
               
               Conread position:262-517
               
               
               Cow position:chr3:19626351-19626612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):29, 9

               
               
               Conread position:263-673
               
               
               Cow position:chr3:52608335-52607925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 71

               
               
               Conread position:267-635
               
               
               Cow position:chr3:25945245-25944857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:271
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):35, 18

               
               
               Conread position:269-634
               
               
               Cow position:chr3:74134855-74134486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 68

               
               
               Conread position:271-439
               
               
               Cow position:chr3:19788685-19788854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):143, 61

               
               
               Conread position:271-604
               
               
               Cow position:chr3:44102113-44101776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:242
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):49, 64

               
               
               Conread position:271-673
               
               
               Cow position:chr3:55010025-55010413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:269
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):153, 42

               
               
               Conread position:272-464
               
               
               Cow position:chr3:16505339-16505524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:274-422
               
               
               Cow position:chr3:35582984-35582834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:274-674
               
               
               Cow position:chr3:70402040-70401643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 61

               
               
               Conread position:279-592
               
               
               Cow position:chr3:26982196-26981883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):47, 71

               
               
               Conread position:281-522
               
               
               Cow position:chr3:15173213-15172971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):133, 15

               
               
               Conread position:292-671
               
               
               Cow position:chr3:73709172-73708793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 43

               
               
               Conread position:292-674
               
               
               Cow position:chr3:28898094-28898482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 197

               
               
               Conread position:296-521
               
               
               Cow position:chr3:32409333-32409104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:296-578
               
               
               Cow position:chr3:30222309-30222018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:218
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):118, 18

               
               
               Conread position:298-476
               
               
               Cow position:chr3:20515701-20515879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):11, 19

               
               
               Conread position:301-427
               
               
               Cow position:chr3:27670529-27670404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):14, 33

               
               
               Conread position:301-530
               
               
               Cow position:chr3:79645311-79645555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):25, 146

               
               
               Conread position:301-675
               
               
               Cow position:chr3:81371767-81371396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:269
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):44, 9

               
               
               Conread position:301-686
               
               
               Cow position:chr3:82461292-82460911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 24

               
               
               Conread position:302-588
               
               
               Cow position:chr3:43727187-43726902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:206
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):22, 33

               
               
               Conread position:302-671
               
               
               Cow position:chr3:8394056-8393684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:267
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):94, 21

               
               
               Conread position:302-691
               
               
               Cow position:chr3:48296812-48296434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 25

               
               
               Conread position:304-539
               
               
               Cow position:chr3:5366884-5366646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):24, 100

               
               
               Conread position:304-704
               
               
               Cow position:chr3:26681702-26682081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:276
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):168, 30

               
               
               Conread position:305-482
               
               
               Cow position:chr3:74801955-74802134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):109, 28

               
               
               Conread position:305-612
               
               
               Cow position:chr3:26874702-26874390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:231
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):164, 112

               
               
               Conread position:307-594
               
               
               Cow position:chr3:84596857-84597143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):110, 25

               
               
               Conread position:307-673
               
               
               Cow position:chr3:2216477-2216101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 19

               
               
               Conread position:308-423
               
               
               Cow position:chr3:53256637-53256522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:93
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:308-475
               
               
               Cow position:chr3:21997680-21997847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):110, 25

               
               
               Conread position:308-533
               
               
               Cow position:chr3:63177590-63177360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):110, 26

               
               
               Conread position:308-611
               
               
               Cow position:chr3:49790704-49791013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):99, 26

               
               
               Conread position:308-674
               
               
               Cow position:chr3:46901306-46900935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 39

               
               
               Conread position:308-675
               
               
               Cow position:chr3:59630405-59630760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:263
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):219, 19

               
               
               Conread position:310-422
               
               
               Cow position:chr3:1533998-1534111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:90
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:310-464
               
               
               Cow position:chr3:28258203-28258046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):22, 30

               
               
               Conread position:310-465
               
               
               Cow position:chr3:77589620-77589469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:310-468
               
               
               Cow position:chr3:82629421-82629263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):107, 23

               
               
               Conread position:310-502
               
               
               Cow position:chr3:74900535-74900726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):16, 58

               
               
               Conread position:310-538
               
               
               Cow position:chr3:10104148-10103924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):20, 87

               
               
               Conread position:310-539
               
               
               Cow position:chr3:84175718-84175950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):109, 27

               
               
               Conread position:310-650
               
               
               Cow position:chr3:17447509-17447843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 23

               
               
               Conread position:310-651
               
               
               Cow position:chr3:8733253-8733575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:310-651
               
               
               Cow position:chr3:49328052-49327701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 126

               
               
               Conread position:310-653
               
               
               Cow position:chr3:27940035-27940366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 104

               
               
               Conread position:310-673
               
               
               Cow position:chr3:17934831-17935181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:258
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):108, 125

               
               
               Conread position:310-673
               
               
               Cow position:chr3:56059917-56059549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 24

               
               
               Conread position:310-673
               
               
               Cow position:chr3:70899996-70899642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 23

               
               
               Conread position:310-674
               
               
               Cow position:chr3:2680619-2680252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 24

               
               
               Conread position:310-674
               
               
               Cow position:chr3:52863079-52863443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 14

               
               
               Conread position:310-675
               
               
               Cow position:chr3:6690108-6689731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:266
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):16, 42

               
               
               Conread position:310-676
               
               
               Cow position:chr3:22716190-22716541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:257
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):57, 125

               
               
               Conread position:311-455
               
               
               Cow position:chr3:82123442-82123588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):101, 22

               
               
               Conread position:311-472
               
               
               Cow position:chr3:21642094-21641931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):15, 101

               
               
               Conread position:311-524
               
               
               Cow position:chr3:7428105-7427893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):15, 105

               
               
               Conread position:311-526
               
               
               Cow position:chr3:27727725-27727940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):113, 123

               
               
               Conread position:311-540
               
               
               Cow position:chr3:22510132-22509901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):20, 63

               
               
               Conread position:311-605
               
               
               Cow position:chr3:57760603-57760304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:215
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):108, 22

               
               
               Conread position:311-615
               
               
               Cow position:chr3:49218200-49218519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:237
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):83, 16

               
               
               Conread position:311-673
               
               
               Cow position:chr3:73442991-73443345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 22

               
               
               Conread position:312-467
               
               
               Cow position:chr3:10026587-10026737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:313-472
               
               
               Cow position:chr3:68130187-68130341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):150, 42

               
               
               Conread position:313-536
               
               
               Cow position:chr3:1785141-1785363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):104, 174

               
               
               Conread position:313-539
               
               
               Cow position:chr3:35621405-35621178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):171, 106

               
               
               Conread position:313-545
               
               
               Cow position:chr3:33693922-33693687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):104, 20

               
               
               Conread position:313-575
               
               
               Cow position:chr3:59883965-59884237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):13, 22

               
               
               Conread position:313-579
               
               
               Cow position:chr3:24935467-24935203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):103, 31

               
               
               Conread position:313-600
               
               
               Cow position:chr3:67930082-67930371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 67

               
               
               Conread position:313-674
               
               
               Cow position:chr3:61144201-61143834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 97

               
               
               Conread position:313-691
               
               
               Cow position:chr3:67704649-67704263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 20

               
               
               Conread position:314-596
               
               
               Cow position:chr3:20677740-20678020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 19

               
               
               Conread position:314-668
               
               
               Cow position:chr3:57624566-57624215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 20

               
               
               Conread position:314-673
               
               
               Cow position:chr3:5100670-5101018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 23

               
               
               Conread position:314-675
               
               
               Cow position:chr3:53113277-53112908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 19

               
               
               Conread position:315-468
               
               
               Cow position:chr3:28735412-28735568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):92, 18

               
               
               Conread position:315-521
               
               
               Cow position:chr3:55984199-55983988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:172
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):100, 18

               
               
               Conread position:315-671
               
               
               Cow position:chr3:14626049-14626408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:264
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):104, 18

               
               
               Conread position:315-673
               
               
               Cow position:chr3:12711814-12712181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 18

               
               
               Conread position:316-528
               
               
               Cow position:chr3:72503796-72504011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):99, 21

               
               
               Conread position:316-615
               
               
               Cow position:chr3:63269323-63269021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 28

               
               
               Conread position:317-447
               
               
               Cow position:chr3:24372020-24371890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):97, 16

               
               
               Conread position:317-476
               
               
               Cow position:chr3:20334108-20333946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):21, 118

               
               
               Conread position:317-479
               
               
               Cow position:chr3:56704222-56704388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):111, 16

               
               
               Conread position:317-673
               
               
               Cow position:chr3:33632807-33633145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:234
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):21, 56

               
               
               Conread position:319-468
               
               
               Cow position:chr3:41652474-41652323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):95, 116

               
               
               Conread position:320-490
               
               
               Cow position:chr3:23667716-23667547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):104, 13

               
               
               Conread position:320-640
               
               
               Cow position:chr3:53240353-53240048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:238
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):52, 46

               
               
               Conread position:320-662
               
               
               Cow position:chr3:3738577-3738237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 13

               
               
               Conread position:320-673
               
               
               Cow position:chr3:79292925-79292576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 83

               
               
               Conread position:320-674
               
               
               Cow position:chr3:38691308-38691665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 100

               
               
               Conread position:321-595
               
               
               Cow position:chr3:58767358-58767084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):97, 12

               
               
               Conread position:323-571
               
               
               Cow position:chr3:58973388-58973143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):96, 10

               
               
               Conread position:323-670
               
               
               Cow position:chr3:26218960-26219317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 14

               
               
               Conread position:323-673
               
               
               Cow position:chr3:70565644-70565996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 112

               
               
               Conread position:323-674
               
               
               Cow position:chr3:34271007-34270671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 10

               
               
               Conread position:323-683
               
               
               Cow position:chr3:55271952-55272311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 11

               
               
               Conread position:326-673
               
               
               Cow position:chr3:55085079-55085442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 11

               
               
               Conread position:326-673
               
               
               Cow position:chr3:59588601-59588261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 87

               
               
               Conread position:327-672
               
               
               Cow position:chr3:50614731-50614382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:247
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):88, 280

               
               
               Conread position:328-465
               
               
               Cow position:chr3:51349912-51349773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):86, 111

               
               
               Conread position:328-512
               
               
               Cow position:chr3:3818871-3818697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):156, 48

               
               
               Conread position:328-584
               
               
               Cow position:chr3:31850288-31850543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):140, 85

               
               
               Conread position:328-606
               
               
               Cow position:chr3:66883855-66884136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):199, 87

               
               
               Conread position:328-673
               
               
               Cow position:chr3:80581744-80581413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):199, 79

               
               
               Conread position:329-477
               
               
               Cow position:chr3:11292160-11292310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):89, 106

               
               
               Conread position:329-539
               
               
               Cow position:chr3:16254753-16254948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):198, 67

               
               
               Conread position:329-671
               
               
               Cow position:chr3:83815700-83816049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 50

               
               
               Conread position:329-672
               
               
               Cow position:chr3:49650476-49650122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 195

               
               
               Conread position:329-673
               
               
               Cow position:chr3:525434-525096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 102

               
               
               Conread position:329-697
               
               
               Cow position:chr3:66292088-66292459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 168

               
               
               Conread position:331-600
               
               
               Cow position:chr3:34669647-34669917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 88

               
               
               Conread position:331-672
               
               
               Cow position:chr3:59101913-59101576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:250
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):153, 82

               
               
               Conread position:331-675
               
               
               Cow position:chr3:38347276-38346941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 101

               
               
               Conread position:333-564
               
               
               Cow position:chr3:46541745-46541981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):83, 102

               
               
               Conread position:333-673
               
               
               Cow position:chr3:4032047-4031710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 56

               
               
               Conread position:334-666
               
               
               Cow position:chr3:11712048-11711702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 104

               
               
               Conread position:336-686
               
               
               Cow position:chr3:61840356-61840017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 77

               
               
               Conread position:337-474
               
               
               Cow position:chr3:29828067-29828207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):38, 99

               
               
               Conread position:337-578
               
               
               Cow position:chr3:55109533-55109782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):81, 98

               
               
               Conread position:337-596
               
               
               Cow position:chr3:74502245-74502507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:205
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):87, 82

               
               
               Conread position:337-645
               
               
               Cow position:chr3:19404378-19404093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:337-673
               
               
               Cow position:chr3:5097287-5096946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 135

               
               
               Conread position:337-673
               
               
               Cow position:chr3:59799328-59798996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):77, 98

               
               
               Conread position:337-673
               
               
               Cow position:chr3:62826539-62826881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 55

               
               
               Conread position:337-694
               
               
               Cow position:chr3:75057066-75057397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:251
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):133, 38

               
               
               Conread position:338-511
               
               
               Cow position:chr3:3472119-3471941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):76, 97

               
               
               Conread position:338-539
               
               
               Cow position:chr3:80468599-80468799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):86, 41

               
               
               Conread position:338-670
               
               
               Cow position:chr3:56298-56626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 72

               
               
               Conread position:338-673
               
               
               Cow position:chr3:10347434-10347097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 101

               
               
               Conread position:338-675
               
               
               Cow position:chr3:50069842-50069519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):75, 93

               
               
               Conread position:338-687
               
               
               Cow position:chr3:58968824-58969168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 97

               
               
               Conread position:339-479
               
               
               Cow position:chr3:81277390-81277531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):80, 100

               
               
               Conread position:344-619
               
               
               Cow position:chr3:3638251-3637978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:209
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):183, 75

               
               
               Conread position:344-619
               
               
               Cow position:chr3:7940484-7940760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 69

               
               
               Conread position:344-675
               
               
               Cow position:chr3:75711379-75711058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:245
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):70, 91

               
               
               Conread position:346-628
               
               
               Cow position:chr3:10896893-10896615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):73, 92

               
               
               Conread position:346-661
               
               
               Cow position:chr3:23444817-23445136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 89

               
               
               Conread position:346-673
               
               
               Cow position:chr3:12287293-12286977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:238
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):89, 43

               
               
               Conread position:348-615
               
               
               Cow position:chr3:34556173-34556442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):113, 10

               
               
               Conread position:349-644
               
               
               Cow position:chr3:76015360-76015070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):66, 86

               
               
               Conread position:354-673
               
               
               Cow position:chr3:73759454-73759775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 50

               
               
               Conread position:358-673
               
               
               Cow position:chr3:39171427-39171742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 61

               
               
               Conread position:358-673
               
               
               Cow position:chr3:72019175-72018861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:234
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):66, 39

               
               
               Conread position:360-673
               
               
               Cow position:chr3:66609787-66610096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 76

               
               
               Conread position:362-673
               
               
               Cow position:chr3:65800640-65800334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 45

               
               
               Conread position:363-673
               
               
               Cow position:chr3:31771737-31771440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):57, 21

               
               
               Conread position:364-664
               
               
               Cow position:chr3:74878536-74878838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:236
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):60, 55

               
               
               Conread position:367-589
               
               
               Cow position:chr3:3913392-3913629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:367-589
               
               
               Cow position:chr3:81507061-81507290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):52, 78

               
               
               Conread position:367-600
               
               
               Cow position:chr3:44837326-44837569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):62, 163

               
               
               Conread position:367-611
               
               
               Cow position:chr3:79092342-79092596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):52, 64

               
               
               Conread position:367-673
               
               
               Cow position:chr3:22089227-22089540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):57, 52

               
               
               Conread position:367-673
               
               
               Cow position:chr3:31206926-31206614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:221
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):61, 130

               
               
               Conread position:368-650
               
               
               Cow position:chr3:31046903-31047184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:218
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):50, 33

               
               
               Conread position:368-673
               
               
               Cow position:chr3:71430155-71430470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:228
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):51, 156

               
               
               Conread position:370-673
               
               
               Cow position:chr3:83921231-83920940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:218
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):80, 34

               
               
               Conread position:372-599
               
               
               Cow position:chr3:56523401-56523616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):39, 22

               
               
               Conread position:373-675
               
               
               Cow position:chr3:79591847-79592149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):57, 89

               
               
               Conread position:374-605
               
               
               Cow position:chr3:36446675-36446911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):56, 150

               
               
               Conread position:374-673
               
               
               Cow position:chr3:29807507-29807204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 46

               
               
               Conread position:375-672
               
               
               Cow position:chr3:22820613-22820312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 24

               
               
               Conread position:375-673
               
               
               Cow position:chr3:46350713-46350401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 11

               
               
               Conread position:377-673
               
               
               Cow position:chr3:19708068-19708358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):159, 38

               
               
               Conread position:378-567
               
               
               Cow position:chr3:32183979-32184177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:383-630
               
               
               Cow position:chr3:35005810-35005562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):36, 60

               
               
               Conread position:384-673
               
               
               Cow position:chr3:43528199-43528495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):35, 156

               
               
               Conread position:392-673
               
               
               Cow position:chr3:27544317-27544587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):137, 21

               
               
               Conread position:396-629
               
               
               Cow position:chr3:39328421-39328186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):23, 43

               
               
               Conread position:396-675
               
               
               Cow position:chr3:45524288-45524004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):34, 215

               
               
               Conread position:398-655
               
               
               Cow position:chr3:83201510-83201768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:199
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):84, 17

               
               
               Conread position:399-579
               
               
               Cow position:chr3:15992736-15992546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):25, 20

               
               
               Conread position:399-667
               
               
               Cow position:chr3:41328459-41328203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):19, 38

               
               
               Conread position:401-673
               
               
               Cow position:chr3:5416204-5416489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:216
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):18, 37

               
               
               Conread position:407-668
               
               
               Cow position:chr3:74409492-74409238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):68, 21

               
               
               Conread position:408-671
               
               
               Cow position:chr3:42178166-42177902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):7, 17

               
               
               Conread position:408-675
               
               
               Cow position:chr3:80081804-80082077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):29, 11

               
               
               Conread position:409-673
               
               
               Cow position:chr3:59515108-59514853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):75, 6

               
               
               Conread position:415-672
               
               
               Cow position:chr3:9843588-9843326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:200
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):15, 9

               
               
               Conread position:417-630
               
               
               Cow position:chr3:15859669-15859886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):66, 19

               
               
               Conread position:417-673
               
               
               Cow position:chr3:84000610-84000354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:193
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):122, 19

               
               
               Conread position:418-672
               
               
               Cow position:chr3:44622890-44623156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):46, 17

               
               
               Conread position:419-599
               
               
               Cow position:chr3:78782953-78782778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):111, 16

               
               
               Conread position:428-673
               
               
               Cow position:chr3:73590007-73590256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:193
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):45, 97

               
               
               Conread position:431-650
               
               
               Cow position:chr3:14717778-14717571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):122, 31

               
               
               Conread position:431-672
               
               
               Cow position:chr3:25691735-25691492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 50

               
               
               Conread position:434-600
               
               
               Cow position:chr3:27212345-27212173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):50, 88

               
               
               Conread position:434-634
               
               
               Cow position:chr3:22900014-22900212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):113, 43

               
               
               Conread position:434-673
               
               
               Cow position:chr3:364231-364477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):19, 24

               
               
               Conread position:434-673
               
               
               Cow position:chr3:8604037-8604272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):93, 44

               
               
               Conread position:434-673
               
               
               Cow position:chr3:77496810-77496559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:189
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:434-674
               
               
               Cow position:chr3:67161925-67161672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):50, 37

               
               
               Conread position:434-674
               
               
               Cow position:chr3:82657106-82657344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):42, 18

               
               
               Conread position:435-670
               
               
               Cow position:chr3:52650548-52650788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):49, 163

               
               
               Conread position:436-670
               
               
               Cow position:chr3:44534780-44535022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):49, 84

               
               
               Conread position:436-674
               
               
               Cow position:chr3:49731660-49731897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):48, 33

               
               
               Conread position:436-675
               
               
               Cow position:chr3:30701289-30701062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):44, 88

               
               
               Conread position:439-670
               
               
               Cow position:chr3:48578817-48578586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):24, 68

               
               
               Conread position:439-671
               
               
               Cow position:chr3:81401336-81401563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):83, 16

               
               
               Conread position:439-673
               
               
               Cow position:chr3:2903317-2903548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):41, 85

               
               
               Conread position:439-673
               
               
               Cow position:chr3:41367004-41367242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:186
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):37, 111

               
               
               Conread position:440-673
               
               
               Cow position:chr3:49455213-49454977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):87, 79

               
               
               Conread position:441-624
               
               
               Cow position:chr3:65381124-65380941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):33, 52

               
               
               Conread position:442-613
               
               
               Cow position:chr3:22924437-22924611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):85, 65

               
               
               Conread position:442-670
               
               
               Cow position:chr3:15661728-15661955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):81, 41

               
               
               Conread position:442-671
               
               
               Cow position:chr3:3164522-3164752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):42, 28

               
               
               Conread position:468-672
               
               
               Cow position:chr3:8717200-8716989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):18, 189

               
               
               Conread position:471-667
               
               
               Cow position:chr3:15080802-15080991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):59, 52

               
               
               Conread position:483-671
               
               
               Cow position:chr3:22872115-22872308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):46, 36

               
               
               Conread position:483-671
               
               
               Cow position:chr3:23270030-23269846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):44, 37

               
               
               Conread position:487-673
               
               
               Cow position:chr3:56704616-56704795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):40, 32

               
               
               Conread position:487-675
               
               
               Cow position:chr3:18855023-18854833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):40, 32

               
               
               Conread position:162-422
               
               
               Cow position:chr4:14512277-14512547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):80, 21

               
               
               Conread position:162-605
               
               
               Cow position:chr4:32458581-32459040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 21

               
               
               Conread position:201-472
               
               
               Cow position:chr4:67393328-67393054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:203
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):46, 137

               
               
               Conread position:217-600
               
               
               Cow position:chr4:20147401-20147012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 68

               
               
               Conread position:220-590
               
               
               Cow position:chr4:12031061-12030683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:255
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):81, 34

               
               
               Conread position:221-474
               
               
               Cow position:chr4:3853690-3853430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):107, 31

               
               
               Conread position:222-670
               
               
               Cow position:chr4:49158581-49159023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 173

               
               
               Conread position:225-674
               
               
               Cow position:chr4:68387997-68387548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:307
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):45, 98

               
               
               Conread position:227-553
               
               
               Cow position:chr4:19578588-19578277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 22

               
               
               Conread position:232-395
               
               
               Cow position:chr4:19504123-19503967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:233-469
               
               
               Cow position:chr4:26959766-26960006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):93, 188

               
               
               Conread position:233-473
               
               
               Cow position:chr4:36517301-36517520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):184, 12

               
               
               Conread position:233-499
               
               
               Cow position:chr4:34510031-34509770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):11, 42

               
               
               Conread position:233-539
               
               
               Cow position:chr4:45725067-45724767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):16, 80

               
               
               Conread position:233-652
               
               
               Cow position:chr4:51083142-51083583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 12

               
               
               Conread position:233-692
               
               
               Cow position:chr4:202943-203407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 50

               
               
               Conread position:234-378
               
               
               Cow position:chr4:30935161-30935307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):92, 18

               
               
               Conread position:234-387
               
               
               Cow position:chr4:7816499-7816339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):57, 15

               
               
               Conread position:234-387
               
               
               Cow position:chr4:42608937-42608785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:234-407
               
               
               Cow position:chr4:23925177-23925358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):79, 15

               
               
               Conread position:234-417
               
               
               Cow position:chr4:19543142-19542953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:234-421
               
               
               Cow position:chr4:23059653-23059844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:234-422
               
               
               Cow position:chr4:45964089-45963894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:234-424
               
               
               Cow position:chr4:66168140-66168323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):176, 15

               
               
               Conread position:234-426
               
               
               Cow position:chr4:56805364-56805185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):12, 37

               
               
               Conread position:234-431
               
               
               Cow position:chr4:23984920-23985122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):78, 15

               
               
               Conread position:234-447
               
               
               Cow position:chr4:5790844-5790629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):94, 18

               
               
               Conread position:234-452
               
               
               Cow position:chr4:617179-617398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):92, 18

               
               
               Conread position:234-452
               
               
               Cow position:chr4:33838603-33838820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):10, 101

               
               
               Conread position:234-459
               
               
               Cow position:chr4:51986376-51986606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):92, 18

               
               
               Conread position:234-467
               
               
               Cow position:chr4:5728029-5727809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):163, 15

               
               
               Conread position:234-467
               
               
               Cow position:chr4:33181742-33181509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):97, 20

               
               
               Conread position:234-467
               
               
               Cow position:chr4:48381589-48381346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):73, 209

               
               
               Conread position:234-472
               
               
               Cow position:chr4:21112374-21112607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:234-506
               
               
               Cow position:chr4:59001938-59002209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 164

               
               
               Conread position:234-517
               
               
               Cow position:chr4:19333587-19333309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):21, 44

               
               
               Conread position:234-527
               
               
               Cow position:chr4:45800078-45799779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):73, 19

               
               
               Conread position:234-539
               
               
               Cow position:chr4:2774922-2774609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):93, 199

               
               
               Conread position:234-539
               
               
               Cow position:chr4:52780043-52779744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:228
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):104, 15

               
               
               Conread position:234-547
               
               
               Cow position:chr4:20124768-20125083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):8, 91

               
               
               Conread position:234-550
               
               
               Cow position:chr4:45837431-45837750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):185, 19

               
               
               Conread position:234-552
               
               
               Cow position:chr4:19430558-19430239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):75, 28

               
               
               Conread position:234-555
               
               
               Cow position:chr4:1419423-1419094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:238
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):138, 70

               
               
               Conread position:234-557
               
               
               Cow position:chr4:11611063-11610749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:230
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):88, 52

               
               
               Conread position:234-558
               
               
               Cow position:chr4:52831816-52832149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):99, 201

               
               
               Conread position:234-586
               
               
               Cow position:chr4:45250171-45249817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):96, 18

               
               
               Conread position:234-596
               
               
               Cow position:chr4:34369267-34369622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:268
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):39, 15

               
               
               Conread position:234-605
               
               
               Cow position:chr4:17186150-17186531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 15

               
               
               Conread position:234-605
               
               
               Cow position:chr4:34022387-34022765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 103

               
               
               Conread position:234-611
               
               
               Cow position:chr4:33096770-33097160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 122

               
               
               Conread position:234-618
               
               
               Cow position:chr4:22713299-22713682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 15

               
               
               Conread position:234-630
               
               
               Cow position:chr4:1026037-1026428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 41

               
               
               Conread position:234-649
               
               
               Cow position:chr4:24810253-24810662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 15

               
               
               Conread position:234-652
               
               
               Cow position:chr4:46258693-46258264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:278
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:234-660
               
               
               Cow position:chr4:22860528-22860935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:290
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):169, 76

               
               
               Conread position:234-661
               
               
               Cow position:chr4:25356130-25356536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 59

               
               
               Conread position:234-671
               
               
               Cow position:chr4:12127441-12127883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 15

               
               
               Conread position:234-672
               
               
               Cow position:chr4:9444484-9444931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 18

               
               
               Conread position:234-673
               
               
               Cow position:chr4:23526894-23526455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 18

               
               
               Conread position:234-673
               
               
               Cow position:chr4:25197293-25197740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 12

               
               
               Conread position:234-673
               
               
               Cow position:chr4:34310267-34310697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 18

               
               
               Conread position:234-673
               
               
               Cow position:chr4:37915138-37915572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 87

               
               
               Conread position:234-673
               
               
               Cow position:chr4:53134797-53134369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:309
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):9, 53

               
               
               Conread position:234-674
               
               
               Cow position:chr4:23444840-23445295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 19

               
               
               Conread position:234-697
               
               
               Cow position:chr4:23450891-23451361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 198

               
               
               Conread position:235-414
               
               
               Cow position:chr4:54315024-54315203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):83, 162

               
               
               Conread position:235-475
               
               
               Cow position:chr4:44854089-44854333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):66, 103

               
               
               Conread position:235-482
               
               
               Cow position:chr4:14131621-14131387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:235-492
               
               
               Cow position:chr4:47748611-47748354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):85, 17

               
               
               Conread position:235-503
               
               
               Cow position:chr4:45706236-45705973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:200
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):15, 41

               
               
               Conread position:235-506
               
               
               Cow position:chr4:69290542-69290814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):8, 101

               
               
               Conread position:235-512
               
               
               Cow position:chr4:65463316-65463578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:235-513
               
               
               Cow position:chr4:48423069-48422791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):25, 54

               
               
               Conread position:235-535
               
               
               Cow position:chr4:16513331-16513624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):65, 21

               
               
               Conread position:235-551
               
               
               Cow position:chr4:22546645-22546959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:229
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):65, 50

               
               
               Conread position:235-553
               
               
               Cow position:chr4:34699844-34700164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:245
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):13, 94

               
               
               Conread position:235-670
               
               
               Cow position:chr4:45589396-45589827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:308
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):13, 184

               
               
               Conread position:235-672
               
               
               Cow position:chr4:47731059-47730621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 12

               
               
               Conread position:235-673
               
               
               Cow position:chr4:54455147-54455586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 102

               
               
               Conread position:235-674
               
               
               Cow position:chr4:21065223-21064795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 75

               
               
               Conread position:235-675
               
               
               Cow position:chr4:3283257-3283693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 14

               
               
               Conread position:235-675
               
               
               Cow position:chr4:66547565-66547997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 368

               
               
               Conread position:235-680
               
               
               Cow position:chr4:25227132-25226683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:309
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):8, 19

               
               
               Conread position:236-377
               
               
               Cow position:chr4:14504851-14504982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:236-406
               
               
               Cow position:chr4:50837901-50837729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:236-422
               
               
               Cow position:chr4:5250387-5250198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):82, 16

               
               
               Conread position:236-424
               
               
               Cow position:chr4:34919077-34919261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):177, 92

               
               
               Conread position:236-429
               
               
               Cow position:chr4:34722685-34722882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):12, 171

               
               
               Conread position:236-437
               
               
               Cow position:chr4:36876660-36876862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):55, 16

               
               
               Conread position:236-441
               
               
               Cow position:chr4:2770268-2770070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):187, 73

               
               
               Conread position:236-444
               
               
               Cow position:chr4:39007693-39007495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):169, 13

               
               
               Conread position:236-447
               
               
               Cow position:chr4:19496699-19496479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):12, 195

               
               
               Conread position:236-452
               
               
               Cow position:chr4:21506767-21506976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):21, 52

               
               
               Conread position:236-463
               
               
               Cow position:chr4:6093867-6094097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):78, 139

               
               
               Conread position:236-464
               
               
               Cow position:chr4:46404713-46404936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):7, 38

               
               
               Conread position:236-521
               
               
               Cow position:chr4:38822122-38822408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):93, 13

               
               
               Conread position:236-539
               
               
               Cow position:chr4:7043621-7043931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):82, 16

               
               
               Conread position:236-539
               
               
               Cow position:chr4:37675823-37675507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:240
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):71, 13

               
               
               Conread position:236-576
               
               
               Cow position:chr4:48409089-48409415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 13

               
               
               Conread position:236-579
               
               
               Cow position:chr4:19119217-19118854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:253
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):7, 196

               
               
               Conread position:236-662
               
               
               Cow position:chr4:4318958-4319382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 13

               
               
               Conread position:236-673
               
               
               Cow position:chr4:1985847-1985407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:302
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):90, 13

               
               
               Conread position:236-673
               
               
               Cow position:chr4:10968201-10968627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 16

               
               
               Conread position:236-674
               
               
               Cow position:chr4:21391620-21392048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 33

               
               
               Conread position:236-674
               
               
               Cow position:chr4:22073121-22073553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 17

               
               
               Conread position:236-675
               
               
               Cow position:chr4:36290820-36290363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 85

               
               
               Conread position:236-686
               
               
               Cow position:chr4:19435446-19435005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 35

               
               
               Conread position:237-414
               
               
               Cow position:chr4:66122174-66122347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:237-417
               
               
               Cow position:chr4:12245407-12245229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):89, 147

               
               
               Conread position:237-457
               
               
               Cow position:chr4:56746189-56745966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):89, 15

               
               
               Conread position:237-467
               
               
               Cow position:chr4:50687670-50687896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):73, 15

               
               
               Conread position:237-474
               
               
               Cow position:chr4:68590964-68590735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:181
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:237-513
               
               
               Cow position:chr4:45874268-45874549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):82, 16

               
               
               Conread position:237-570
               
               
               Cow position:chr4:20184879-20184570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:232
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):181, 34

               
               
               Conread position:237-657
               
               
               Cow position:chr4:10999513-10999930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 10

               
               
               Conread position:237-670
               
               
               Cow position:chr4:10915635-10916080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 56

               
               
               Conread position:237-675
               
               
               Cow position:chr4:4084913-4085380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 12

               
               
               Conread position:237-686
               
               
               Cow position:chr4:30974530-30974081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 177

               
               
               Conread position:237-687
               
               
               Cow position:chr4:31023645-31023185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 118

               
               
               Conread position:238-392
               
               
               Cow position:chr4:46176101-46176257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):88, 14

               
               
               Conread position:238-423
               
               
               Cow position:chr4:63078421-63078234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):62, 48

               
               
               Conread position:238-427
               
               
               Cow position:chr4:4647595-4647406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):83, 18

               
               
               Conread position:238-427
               
               
               Cow position:chr4:61969535-61969719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):178, 38

               
               
               Conread position:238-467
               
               
               Cow position:chr4:32562026-32561794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):93, 14

               
               
               Conread position:238-468
               
               
               Cow position:chr4:31178016-31177790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):177, 15

               
               
               Conread position:238-481
               
               
               Cow position:chr4:47305275-47305030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):88, 11

               
               
               Conread position:238-521
               
               
               Cow position:chr4:44772843-44773136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):14, 197

               
               
               Conread position:238-522
               
               
               Cow position:chr4:19573484-19573196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):86, 115

               
               
               Conread position:238-539
               
               
               Cow position:chr4:38156898-38157199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:226
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):176, 69

               
               
               Conread position:238-577
               
               
               Cow position:chr4:14542480-14542829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):99, 124

               
               
               Conread position:238-590
               
               
               Cow position:chr4:15439780-15439416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:253
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):80, 14

               
               
               Conread position:238-594
               
               
               Cow position:chr4:17774170-17774521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 53

               
               
               Conread position:238-630
               
               
               Cow position:chr4:28839807-28839426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 70

               
               
               Conread position:238-633
               
               
               Cow position:chr4:61388874-61389276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:266
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):88, 15

               
               
               Conread position:238-651
               
               
               Cow position:chr4:59277277-59277700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 165

               
               
               Conread position:238-663
               
               
               Cow position:chr4:13693479-13693910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 106

               
               
               Conread position:238-673
               
               
               Cow position:chr4:3688124-3687686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 199

               
               
               Conread position:238-673
               
               
               Cow position:chr4:51851407-51850954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 96

               
               
               Conread position:238-673
               
               
               Cow position:chr4:66256873-66256445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:311
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):136, 14

               
               
               Conread position:238-674
               
               
               Cow position:chr4:7964453-7964895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:302
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):88, 14

               
               
               Conread position:238-674
               
               
               Cow position:chr4:15871547-15871966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:287
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):177, 14

               
               
               Conread position:238-674
               
               
               Cow position:chr4:20327528-20327958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 22

               
               
               Conread position:238-674
               
               
               Cow position:chr4:65919812-65919374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 11

               
               
               Conread position:238-674
               
               
               Cow position:chr4:68076345-68076772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 14

               
               
               Conread position:238-675
               
               
               Cow position:chr4:34209132-34208684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 39

               
               
               Conread position:239-368
               
               
               Cow position:chr4:5276264-5276392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):85, 34

               
               
               Conread position:239-405
               
               
               Cow position:chr4:39569393-39569232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):10, 70

               
               
               Conread position:239-409
               
               
               Cow position:chr4:56395710-56395537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:239-417
               
               
               Cow position:chr4:37985923-37985749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):81, 119

               
               
               Conread position:239-421
               
               
               Cow position:chr4:47048308-47048129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):174, 34

               
               
               Conread position:239-422
               
               
               Cow position:chr4:25802888-25802701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):61, 46

               
               
               Conread position:239-423
               
               
               Cow position:chr4:17790102-17790282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):178, 43

               
               
               Conread position:239-425
               
               
               Cow position:chr4:53347787-53347964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):166, 46

               
               
               Conread position:239-426
               
               
               Cow position:chr4:30769226-30769043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):185, 80

               
               
               Conread position:239-434
               
               
               Cow position:chr4:58045438-58045636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):87, 160

               
               
               Conread position:239-452
               
               
               Cow position:chr4:61391041-61391246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):175, 14

               
               
               Conread position:239-458
               
               
               Cow position:chr4:45212992-45213216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):89, 56

               
               
               Conread position:239-466
               
               
               Cow position:chr4:40995928-40995697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):87, 172

               
               
               Conread position:239-466
               
               
               Cow position:chr4:46883473-46883707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:239-468
               
               
               Cow position:chr4:1645889-1646128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):68, 99

               
               
               Conread position:239-470
               
               
               Cow position:chr4:60302821-60303053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):153, 68

               
               
               Conread position:239-475
               
               
               Cow position:chr4:38350000-38350246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):81, 46

               
               
               Conread position:239-481
               
               
               Cow position:chr4:19199089-19199336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:239-492
               
               
               Cow position:chr4:49800885-49800632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):86, 35

               
               
               Conread position:239-494
               
               
               Cow position:chr4:61608774-61609026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):63, 32

               
               
               Conread position:239-510
               
               
               Cow position:chr4:66380142-66380422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):79, 198

               
               
               Conread position:239-521
               
               
               Cow position:chr4:60131423-60131132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):66, 124

               
               
               Conread position:239-524
               
               
               Cow position:chr4:19292908-19292627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:211
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):28, 47

               
               
               Conread position:239-572
               
               
               Cow position:chr4:18756631-18756288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:240
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):85, 34

               
               
               Conread position:239-592
               
               
               Cow position:chr4:45685647-45685303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 46

               
               
               Conread position:239-596
               
               
               Cow position:chr4:2885352-2885713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:236
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):191, 46

               
               
               Conread position:239-596
               
               
               Cow position:chr4:27632635-27632284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 37

               
               
               Conread position:239-620
               
               
               Cow position:chr4:34077142-34076765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:251
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):180, 46

               
               
               Conread position:239-668
               
               
               Cow position:chr4:18974620-18974195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 120

               
               
               Conread position:239-672
               
               
               Cow position:chr4:19265771-19265331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 124

               
               
               Conread position:239-673
               
               
               Cow position:chr4:7302-7740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:288
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):111, 182

               
               
               Conread position:239-673
               
               
               Cow position:chr4:11099467-11099911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 37

               
               
               Conread position:239-673
               
               
               Cow position:chr4:23646673-23647085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 83

               
               
               Conread position:239-673
               
               
               Cow position:chr4:32259645-32260089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 37

               
               
               Conread position:239-673
               
               
               Cow position:chr4:52748268-52748700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 58

               
               
               Conread position:239-675
               
               
               Cow position:chr4:15905300-15904854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 115

               
               
               Conread position:239-675
               
               
               Cow position:chr4:27665211-27664761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:304
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):94, 124

               
               
               Conread position:239-675
               
               
               Cow position:chr4:43148609-43148159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 122

               
               
               Conread position:239-675
               
               
               Cow position:chr4:55270572-55271004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:290
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):98, 123

               
               
               Conread position:239-675
               
               
               Cow position:chr4:68943987-68944420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:288
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):192, 218

               
               
               Conread position:239-676
               
               
               Cow position:chr4:51899215-51898757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 199

               
               
               Conread position:239-680
               
               
               Cow position:chr4:56591236-56590779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 161

               
               
               Conread position:240-378
               
               
               Cow position:chr4:12666224-12666086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:240-386
               
               
               Cow position:chr4:68358518-68358378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:240-387
               
               
               Cow position:chr4:51026544-51026397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:240-405
               
               
               Cow position:chr4:28854083-28854246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:240-409
               
               
               Cow position:chr4:38940749-38940918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):87, 109

               
               
               Conread position:240-410
               
               
               Cow position:chr4:25929403-25929240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):10, 65

               
               
               Conread position:240-411
               
               
               Cow position:chr4:62794163-62794341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:240-413
               
               
               Cow position:chr4:54785737-54785908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):34, 81

               
               
               Conread position:240-415
               
               
               Cow position:chr4:44681068-44681233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:240-418
               
               
               Cow position:chr4:28660353-28660535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:240-420
               
               
               Cow position:chr4:45840585-45840411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):89, 67

               
               
               Conread position:240-420
               
               
               Cow position:chr4:51617803-51617985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:240-422
               
               
               Cow position:chr4:20164504-20164682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):30, 71

               
               
               Conread position:240-422
               
               
               Cow position:chr4:39010246-39010062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):77, 18

               
               
               Conread position:240-424
               
               
               Cow position:chr4:479609-479783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):178, 34

               
               
               Conread position:240-425
               
               
               Cow position:chr4:66412376-66412196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:240-426
               
               
               Cow position:chr4:12867293-12867113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:240-426
               
               
               Cow position:chr4:21553896-21554077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):16, 83

               
               
               Conread position:240-426
               
               
               Cow position:chr4:42080512-42080692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):60, 25

               
               
               Conread position:240-426
               
               
               Cow position:chr4:46656328-46656137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:240-427
               
               
               Cow position:chr4:42044782-42044968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):178, 22

               
               
               Conread position:240-429
               
               
               Cow position:chr4:32602019-32601839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):174, 67

               
               
               Conread position:240-431
               
               
               Cow position:chr4:12052144-12052325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:240-431
               
               
               Cow position:chr4:56410538-56410345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):178, 124

               
               
               Conread position:240-435
               
               
               Cow position:chr4:59015773-59015588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:240-452
               
               
               Cow position:chr4:10558729-10558516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):80, 33

               
               
               Conread position:240-454
               
               
               Cow position:chr4:43916486-43916266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:240-456
               
               
               Cow position:chr4:4295772-4295562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):10, 37

               
               
               Conread position:240-456
               
               
               Cow position:chr4:13919173-13918957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):10, 21

               
               
               Conread position:240-457
               
               
               Cow position:chr4:18098868-18099087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):178, 190

               
               
               Conread position:240-459
               
               
               Cow position:chr4:19539039-19539264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):86, 21

               
               
               Conread position:240-461
               
               
               Cow position:chr4:29317875-29318105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):80, 25

               
               
               Conread position:240-474
               
               
               Cow position:chr4:69169842-69169604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):55, 92

               
               
               Conread position:240-480
               
               
               Cow position:chr4:18952172-18951925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):10, 200

               
               
               Conread position:240-481
               
               
               Cow position:chr4:42231840-42232070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):170, 45

               
               
               Conread position:240-482
               
               
               Cow position:chr4:46435527-46435274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):51, 200

               
               
               Conread position:240-493
               
               
               Cow position:chr4:35638713-35638960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):171, 21

               
               
               Conread position:240-509
               
               
               Cow position:chr4:60719285-60719021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):86, 36

               
               
               Conread position:240-511
               
               
               Cow position:chr4:45626448-45626703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:202
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):176, 29

               
               
               Conread position:240-519
               
               
               Cow position:chr4:63471897-63472162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):179, 51

               
               
               Conread position:240-520
               
               
               Cow position:chr4:44183927-44184200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):60, 45

               
               
               Conread position:240-527
               
               
               Cow position:chr4:38209782-38210070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:205
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):178, 88

               
               
               Conread position:240-539
               
               
               Cow position:chr4:37732286-37732591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 198

               
               
               Conread position:240-539
               
               
               Cow position:chr4:45636365-45636056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:229
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):57, 38

               
               
               Conread position:240-541
               
               
               Cow position:chr4:46136942-46136641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:219
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):173, 88

               
               
               Conread position:240-544
               
               
               Cow position:chr4:12474043-12473733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):60, 13

               
               
               Conread position:240-549
               
               
               Cow position:chr4:13026487-13026184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):41, 66

               
               
               Conread position:240-565
               
               
               Cow position:chr4:21874371-21874036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):88, 206

               
               
               Conread position:240-586
               
               
               Cow position:chr4:47262730-47262373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:250
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):86, 244

               
               
               Conread position:240-592
               
               
               Cow position:chr4:41370748-41371105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:253
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):111, 67

               
               
               Conread position:240-593
               
               
               Cow position:chr4:9925447-9925801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:254
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):177, 13

               
               
               Conread position:240-602
               
               
               Cow position:chr4:49629679-49629307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:260
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):61, 101

               
               
               Conread position:240-629
               
               
               Cow position:chr4:19407798-19408198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 100

               
               
               Conread position:240-629
               
               
               Cow position:chr4:43515916-43515524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 44

               
               
               Conread position:240-630
               
               
               Cow position:chr4:38935551-38935159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 37

               
               
               Conread position:240-633
               
               
               Cow position:chr4:29107103-29106697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:272
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):93, 12

               
               
               Conread position:240-634
               
               
               Cow position:chr4:13284576-13284173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 13

               
               
               Conread position:240-638
               
               
               Cow position:chr4:9681484-9681086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:282
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):182, 45

               
               
               Conread position:240-638
               
               
               Cow position:chr4:51769298-51768905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 45

               
               
               Conread position:240-640
               
               
               Cow position:chr4:29384048-29384428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):287, 70

               
               
               Conread position:240-640
               
               
               Cow position:chr4:36929485-36929104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):245, 13

               
               
               Conread position:240-667
               
               
               Cow position:chr4:16238976-16239373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:295
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):128, 96

               
               
               Conread position:240-669
               
               
               Cow position:chr4:275637-275222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:296
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):171, 97

               
               
               Conread position:240-670
               
               
               Cow position:chr4:19315814-19316239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 97

               
               
               Conread position:240-672
               
               
               Cow position:chr4:19597139-19597555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 67

               
               
               Conread position:240-672
               
               
               Cow position:chr4:22009869-22010300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):234, 52

               
               
               Conread position:240-672
               
               
               Cow position:chr4:26659493-26659064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 88

               
               
               Conread position:240-672
               
               
               Cow position:chr4:44613197-44612761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 9

               
               
               Conread position:240-673
               
               
               Cow position:chr4:1015264-1014825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:296
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):89, 121

               
               
               Conread position:240-673
               
               
               Cow position:chr4:11871720-11872154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 17

               
               
               Conread position:240-673
               
               
               Cow position:chr4:12465030-12464604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:289
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):26, 123

               
               
               Conread position:240-673
               
               
               Cow position:chr4:19542343-19541884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 193

               
               
               Conread position:240-673
               
               
               Cow position:chr4:19584907-19584462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 178

               
               
               Conread position:240-673
               
               
               Cow position:chr4:19700300-19699858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 203

               
               
               Conread position:240-673
               
               
               Cow position:chr4:22236292-22236716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:311
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):88, 21

               
               
               Conread position:240-673
               
               
               Cow position:chr4:29291699-29291280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 48

               
               
               Conread position:240-673
               
               
               Cow position:chr4:30778627-30779077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:293
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):86, 260

               
               
               Conread position:240-673
               
               
               Cow position:chr4:31136948-31136513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 97

               
               
               Conread position:240-673
               
               
               Cow position:chr4:34641530-34641971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 117

               
               
               Conread position:240-673
               
               
               Cow position:chr4:45662323-45662742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:304
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):161, 43

               
               
               Conread position:240-673
               
               
               Cow position:chr4:49212556-49212963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:293
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):167, 47

               
               
               Conread position:240-673
               
               
               Cow position:chr4:49794843-49794437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):229, 70

               
               
               Conread position:240-673
               
               
               Cow position:chr4:58834225-58834648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 9

               
               
               Conread position:240-674
               
               
               Cow position:chr4:12676988-12676569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 72

               
               
               Conread position:240-674
               
               
               Cow position:chr4:54191295-54190856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 57

               
               
               Conread position:240-674
               
               
               Cow position:chr4:58248598-58248164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 176

               
               
               Conread position:240-674
               
               
               Cow position:chr4:62983365-62983797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 44

               
               
               Conread position:240-674
               
               
               Cow position:chr4:66172602-66173041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 66

               
               
               Conread position:240-674
               
               
               Cow position:chr4:68234156-68233735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:301
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):150, 53

               
               
               Conread position:240-675
               
               
               Cow position:chr4:46061141-46060702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 120

               
               
               Conread position:240-676
               
               
               Cow position:chr4:4084264-4084691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 70

               
               
               Conread position:241-379
               
               
               Cow position:chr4:34544497-34544361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:241-409
               
               
               Cow position:chr4:19420563-19420732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:241-412
               
               
               Cow position:chr4:13508048-13508219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):142, 8

               
               
               Conread position:241-421
               
               
               Cow position:chr4:8675559-8675381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):162, 85

               
               
               Conread position:241-422
               
               
               Cow position:chr4:50494971-50494782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:241-441
               
               
               Cow position:chr4:45773659-45773455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):6, 120

               
               
               Conread position:241-452
               
               
               Cow position:chr4:60527373-60527160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):85, 48

               
               
               Conread position:241-466
               
               
               Cow position:chr4:27699232-27698995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):72, 191

               
               
               Conread position:241-467
               
               
               Cow position:chr4:58018533-58018309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):153, 12

               
               
               Conread position:241-482
               
               
               Cow position:chr4:65173294-65173052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):172, 95

               
               
               Conread position:241-514
               
               
               Cow position:chr4:13608656-13608378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:195
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):68, 136

               
               
               Conread position:241-527
               
               
               Cow position:chr4:32693981-32693689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 93

               
               
               Conread position:241-539
               
               
               Cow position:chr4:59873618-59873323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):163, 78

               
               
               Conread position:241-549
               
               
               Cow position:chr4:38946411-38946091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:227
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):87, 170

               
               
               Conread position:241-573
               
               
               Cow position:chr4:54927238-54927586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:240
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):69, 203

               
               
               Conread position:241-576
               
               
               Cow position:chr4:54524138-54524479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 148

               
               
               Conread position:241-609
               
               
               Cow position:chr4:31505826-31506214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 188

               
               
               Conread position:241-611
               
               
               Cow position:chr4:45076887-45077253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:254
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):173, 78

               
               
               Conread position:241-638
               
               
               Cow position:chr4:38944066-38944472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 92

               
               
               Conread position:241-652
               
               
               Cow position:chr4:16762527-16762953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 99

               
               
               Conread position:241-663
               
               
               Cow position:chr4:45582930-45583360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 39

               
               
               Conread position:241-663
               
               
               Cow position:chr4:48152179-48152601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 33

               
               
               Conread position:241-670
               
               
               Cow position:chr4:10732413-10731979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 80

               
               
               Conread position:241-671
               
               
               Cow position:chr4:22138024-22138476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 199

               
               
               Conread position:241-673
               
               
               Cow position:chr4:56239672-56240087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 32

               
               
               Conread position:242-406
               
               
               Cow position:chr4:23271475-23271310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):84, 42

               
               
               Conread position:242-413
               
               
               Cow position:chr4:40393002-40392836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:242-419
               
               
               Cow position:chr4:61451409-61451227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:242-419
               
               
               Cow position:chr4:65825633-65825812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:242-421
               
               
               Cow position:chr4:45483995-45483810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):65, 98

               
               
               Conread position:242-422
               
               
               Cow position:chr4:30691193-30691015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):174, 64

               
               
               Conread position:242-422
               
               
               Cow position:chr4:47230805-47230987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):86, 36

               
               
               Conread position:242-422
               
               
               Cow position:chr4:47283820-47284002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):86, 36

               
               
               Conread position:242-430
               
               
               Cow position:chr4:561822-561633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):172, 102

               
               
               Conread position:242-443
               
               
               Cow position:chr4:3519610-3519410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):175, 78

               
               
               Conread position:242-447
               
               
               Cow position:chr4:30944145-30943940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):177, 85

               
               
               Conread position:242-452
               
               
               Cow position:chr4:16221680-16221897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):42, 194

               
               
               Conread position:242-460
               
               
               Cow position:chr4:60363542-60363322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):84, 11

               
               
               Conread position:242-472
               
               
               Cow position:chr4:21161296-21161063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):176, 85

               
               
               Conread position:242-475
               
               
               Cow position:chr4:19431499-19431738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):78, 54

               
               
               Conread position:242-482
               
               
               Cow position:chr4:37991780-37991550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):163, 85

               
               
               Conread position:242-504
               
               
               Cow position:chr4:65548841-65549106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):87, 51

               
               
               Conread position:242-542
               
               
               Cow position:chr4:16814582-16814281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):65, 43

               
               
               Conread position:242-602
               
               
               Cow position:chr4:52823211-52823579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):166, 91

               
               
               Conread position:242-625
               
               
               Cow position:chr4:51728265-51727878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 78

               
               
               Conread position:242-633
               
               
               Cow position:chr4:13344727-13344339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 84

               
               
               Conread position:242-650
               
               
               Cow position:chr4:19745061-19744664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 69

               
               
               Conread position:242-673
               
               
               Cow position:chr4:21531449-21531883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 163

               
               
               Conread position:242-673
               
               
               Cow position:chr4:28771879-28772309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 18

               
               
               Conread position:242-673
               
               
               Cow position:chr4:62472266-62471826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 10

               
               
               Conread position:242-674
               
               
               Cow position:chr4:34631098-34630658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 201

               
               
               Conread position:242-674
               
               
               Cow position:chr4:43894618-43895049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:303
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):58, 42

               
               
               Conread position:242-674
               
               
               Cow position:chr4:59871671-59871250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 11

               
               
               Conread position:243-430
               
               
               Cow position:chr4:61887831-61887637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:243-468
               
               
               Cow position:chr4:43542292-43542507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):172, 70

               
               
               Conread position:243-469
               
               
               Cow position:chr4:13241829-13241588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):61, 142

               
               
               Conread position:243-663
               
               
               Cow position:chr4:48486186-48485768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 193

               
               
               Conread position:243-673
               
               
               Cow position:chr4:23846864-23847293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 70

               
               
               Conread position:243-673
               
               
               Cow position:chr4:35982188-35981747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 85

               
               
               Conread position:243-673
               
               
               Cow position:chr4:43909954-43909510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 7

               
               
               Conread position:243-675
               
               
               Cow position:chr4:30574651-30574212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:320
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):83, 30

               
               
               Conread position:244-399
               
               
               Cow position:chr4:63293647-63293494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:244-659
               
               
               Cow position:chr4:13256256-13255865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:285
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):286, 20

               
               
               Conread position:244-675
               
               
               Cow position:chr4:59785509-59785072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 79

               
               
               Conread position:244-683
               
               
               Cow position:chr4:64191992-64192425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:304
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):76, 5

               
               
               Conread position:245-422
               
               
               Cow position:chr4:46761798-46761618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):81, 38

               
               
               Conread position:245-466
               
               
               Cow position:chr4:14020687-14020466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):81, 170

               
               
               Conread position:245-492
               
               
               Cow position:chr4:26012600-26012335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):76, 146

               
               
               Conread position:245-501
               
               
               Cow position:chr4:26830906-26830632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):75, 146

               
               
               Conread position:245-521
               
               
               Cow position:chr4:19102688-19102975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 195

               
               
               Conread position:245-540
               
               
               Cow position:chr4:45012965-45013273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:217
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):62, 186

               
               
               Conread position:245-592
               
               
               Cow position:chr4:19500900-19501249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 47

               
               
               Conread position:245-605
               
               
               Cow position:chr4:3421812-3421449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 190

               
               
               Conread position:245-661
               
               
               Cow position:chr4:13221992-13222406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 198

               
               
               Conread position:245-673
               
               
               Cow position:chr4:508724-509140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 29

               
               
               Conread position:245-673
               
               
               Cow position:chr4:3837456-3837037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 40

               
               
               Conread position:245-673
               
               
               Cow position:chr4:25370282-25369874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 63

               
               
               Conread position:245-673
               
               
               Cow position:chr4:27276357-27276782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 31

               
               
               Conread position:245-673
               
               
               Cow position:chr4:31004224-31004647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 60

               
               
               Conread position:245-673
               
               
               Cow position:chr4:46527192-46526758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:283
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):87, 107

               
               
               Conread position:246-408
               
               
               Cow position:chr4:27657159-27657002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:246-422
               
               
               Cow position:chr4:55694357-55694187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:246-439
               
               
               Cow position:chr4:42373968-42374164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):173, 0

               
               
               Conread position:246-446
               
               
               Cow position:chr4:41907395-41907596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):167, 87

               
               
               Conread position:246-506
               
               
               Cow position:chr4:8182447-8182715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:201
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):33, 21

               
               
               Conread position:246-529
               
               
               Cow position:chr4:48104378-48104662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):54, 39

               
               
               Conread position:246-673
               
               
               Cow position:chr4:19709130-19708699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 282

               
               
               Conread position:248-596
               
               
               Cow position:chr4:33100622-33100986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):67, 49

               
               
               Conread position:249-392
               
               
               Cow position:chr4:62820872-62821014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:249-469
               
               
               Cow position:chr4:12442093-12441858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):58, 136

               
               
               Conread position:249-595
               
               
               Cow position:chr4:29805185-29805538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 168

               
               
               Conread position:249-600
               
               
               Cow position:chr4:16881189-16881536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:261
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):175, 24

               
               
               Conread position:249-671
               
               
               Cow position:chr4:13590271-13589848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:295
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):66, 189

               
               
               Conread position:249-673
               
               
               Cow position:chr4:37343304-37342875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:302
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):167, 75

               
               
               Conread position:249-673
               
               
               Cow position:chr4:40414443-40414873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 80

               
               
               Conread position:249-673
               
               
               Cow position:chr4:53208467-53208059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 61

               
               
               Conread position:249-677
               
               
               Cow position:chr4:23509775-23509341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 27

               
               
               Conread position:250-417
               
               
               Cow position:chr4:36070885-36070719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):91, 69

               
               
               Conread position:250-459
               
               
               Cow position:chr4:46560362-46560153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):101, 62

               
               
               Conread position:250-539
               
               
               Cow position:chr4:61066936-61066666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):234, 36

               
               
               Conread position:250-574
               
               
               Cow position:chr4:20026922-20027248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:233
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):168, 70

               
               
               Conread position:250-646
               
               
               Cow position:chr4:43740714-43740306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:291
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):157, 69

               
               
               Conread position:250-673
               
               
               Cow position:chr4:3341138-3340709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 26

               
               
               Conread position:250-673
               
               
               Cow position:chr4:4320810-4321248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 70

               
               
               Conread position:251-413
               
               
               Cow position:chr4:43579234-43579392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:251-427
               
               
               Cow position:chr4:27511730-27511551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):67, 103

               
               
               Conread position:251-427
               
               
               Cow position:chr4:56236371-56236545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:251-552
               
               
               Cow position:chr4:14500065-14500373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):173, 22

               
               
               Conread position:251-576
               
               
               Cow position:chr4:24092949-24093283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):75, 103

               
               
               Conread position:252-466
               
               
               Cow position:chr4:34653694-34653903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):160, 55

               
               
               Conread position:252-630
               
               
               Cow position:chr4:27344501-27344870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:267
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):74, 33

               
               
               Conread position:252-673
               
               
               Cow position:chr4:68764700-68764275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 128

               
               
               Conread position:252-684
               
               
               Cow position:chr4:11897121-11897553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 85

               
               
               Conread position:253-483
               
               
               Cow position:chr4:38358643-38358872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):75, 32

               
               
               Conread position:253-504
               
               
               Cow position:chr4:62370489-62370243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):162, 68

               
               
               Conread position:253-667
               
               
               Cow position:chr4:24371679-24372087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 16

               
               
               Conread position:253-667
               
               
               Cow position:chr4:34165806-34166211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:292
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):182, 32

               
               
               Conread position:253-674
               
               
               Cow position:chr4:8770274-8769866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:288
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):191, 71

               
               
               Conread position:254-431
               
               
               Cow position:chr4:48138123-48137948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):74, 95

               
               
               Conread position:254-480
               
               
               Cow position:chr4:28753806-28753583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):72, 22

               
               
               Conread position:254-572
               
               
               Cow position:chr4:4827312-4826980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:231
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):41, 172

               
               
               Conread position:254-601
               
               
               Cow position:chr4:54478735-54479078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 149

               
               
               Conread position:254-668
               
               
               Cow position:chr4:26323923-26323496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 173

               
               
               Conread position:254-671
               
               
               Cow position:chr4:22101082-22101507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 106

               
               
               Conread position:257-426
               
               
               Cow position:chr4:39092060-39091895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:257-448
               
               
               Cow position:chr4:53819508-53819702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:257-468
               
               
               Cow position:chr4:7698441-7698230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):85, 68

               
               
               Conread position:257-481
               
               
               Cow position:chr4:60506452-60506227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):68, 16

               
               
               Conread position:257-574
               
               
               Cow position:chr4:54171801-54171475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:236
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):85, 62

               
               
               Conread position:257-672
               
               
               Cow position:chr4:34210213-34209785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 27

               
               
               Conread position:257-673
               
               
               Cow position:chr4:1060103-1060504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:282
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):167, 67

               
               
               Conread position:257-679
               
               
               Cow position:chr4:33970728-33971144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 53

               
               
               Conread position:258-521
               
               
               Cow position:chr4:39458834-39458543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:206
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):52, 39

               
               
               Conread position:258-543
               
               
               Cow position:chr4:41900140-41899869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:209
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):42, 15

               
               
               Conread position:258-580
               
               
               Cow position:chr4:44449349-44449659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:234
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):215, 15

               
               
               Conread position:258-673
               
               
               Cow position:chr4:10056381-10055969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:292
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):15, 11

               
               
               Conread position:258-673
               
               
               Cow position:chr4:23600344-23599928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 9

               
               
               Conread position:258-673
               
               
               Cow position:chr4:63095898-63096317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 39

               
               
               Conread position:258-674
               
               
               Cow position:chr4:22842508-22842104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:299
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):132, 31

               
               
               Conread position:258-675
               
               
               Cow position:chr4:13326776-13327202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 26

               
               
               Conread position:259-674
               
               
               Cow position:chr4:42423631-42424045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 69

               
               
               Conread position:260-674
               
               
               Cow position:chr4:21058207-21058629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:291
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):41, 25

               
               
               Conread position:261-559
               
               
               Cow position:chr4:56498698-56499013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):65, 124

               
               
               Conread position:261-630
               
               
               Cow position:chr4:29237868-29238242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:259
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):72, 102

               
               
               Conread position:261-674
               
               
               Cow position:chr4:19097463-19097048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 149

               
               
               Conread position:261-675
               
               
               Cow position:chr4:17201428-17201031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:264
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):158, 0

               
               
               Conread position:261-675
               
               
               Cow position:chr4:34383166-34383582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 92

               
               
               Conread position:261-675
               
               
               Cow position:chr4:42673348-42672927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 96

               
               
               Conread position:264-675
               
               
               Cow position:chr4:12004387-12003979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 152

               
               
               Conread position:265-429
               
               
               Cow position:chr4:53380859-53380690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):46, 73

               
               
               Conread position:265-565
               
               
               Cow position:chr4:25537718-25537407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):66, 104

               
               
               Conread position:266-479
               
               
               Cow position:chr4:3268203-3268409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:170
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):151, 61

               
               
               Conread position:267-673
               
               
               Cow position:chr4:14942478-14942078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:270
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):52, 86

               
               
               Conread position:267-675
               
               
               Cow position:chr4:28836704-28836282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 93

               
               
               Conread position:268-539
               
               
               Cow position:chr4:12901390-12901662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):20, 16

               
               
               Conread position:269-413
               
               
               Cow position:chr4:19580584-19580734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):51, 82

               
               
               Conread position:269-460
               
               
               Cow position:chr4:34983339-34983524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:269-518
               
               
               Cow position:chr4:61188702-61188957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):57, 90

               
               
               Conread position:269-671
               
               
               Cow position:chr4:22344854-22345255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 19

               
               
               Conread position:269-672
               
               
               Cow position:chr4:53126271-53125896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:281
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):11, 55

               
               
               Conread position:270-572
               
               
               Cow position:chr4:37313334-37313025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 148

               
               
               Conread position:272-482
               
               
               Cow position:chr4:34562542-34562332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):148, 61

               
               
               Conread position:274-673
               
               
               Cow position:chr4:25888684-25889075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 33

               
               
               Conread position:274-674
               
               
               Cow position:chr4:38999584-38999183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 201

               
               
               Conread position:275-674
               
               
               Cow position:chr4:26401114-26400713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 11

               
               
               Conread position:276-478
               
               
               Cow position:chr4:45862570-45862372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):25, 32

               
               
               Conread position:278-439
               
               
               Cow position:chr4:54650329-54650492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):137, 55

               
               
               Conread position:278-673
               
               
               Cow position:chr4:36893523-36893111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 165

               
               
               Conread position:279-417
               
               
               Cow position:chr4:22050958-22051099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:280-478
               
               
               Cow position:chr4:60141371-60141563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:280-539
               
               
               Cow position:chr4:45074212-45073956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):195, 54

               
               
               Conread position:281-673
               
               
               Cow position:chr4:63964839-63965233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 52

               
               
               Conread position:287-674
               
               
               Cow position:chr4:46455919-46456291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 129

               
               
               Conread position:296-475
               
               
               Cow position:chr4:19256835-19256653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):15, 78

               
               
               Conread position:296-633
               
               
               Cow position:chr4:16594220-16593881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 14

               
               
               Conread position:297-658
               
               
               Cow position:chr4:27755167-27755528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 171

               
               
               Conread position:298-643
               
               
               Cow position:chr4:13941591-13941246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):241, 35

               
               
               Conread position:298-657
               
               
               Cow position:chr4:28613966-28613595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):28, 62

               
               
               Conread position:298-673
               
               
               Cow position:chr4:3251409-3251778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:260
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):24, 15

               
               
               Conread position:298-673
               
               
               Cow position:chr4:25879522-25879154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 11

               
               
               Conread position:298-673
               
               
               Cow position:chr4:48961353-48961732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 20

               
               
               Conread position:300-664
               
               
               Cow position:chr4:34337138-34337503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 132

               
               
               Conread position:301-592
               
               
               Cow position:chr4:1354480-1354783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):16, 33

               
               
               Conread position:301-674
               
               
               Cow position:chr4:46597498-46597139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:264
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):183, 23

               
               
               Conread position:302-585
               
               
               Cow position:chr4:59378042-59377756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:215
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):27, 137

               
               
               Conread position:302-634
               
               
               Cow position:chr4:58858038-58858366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):108, 21

               
               
               Conread position:302-674
               
               
               Cow position:chr4:19314144-19313761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:266
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):14, 35

               
               
               Conread position:304-673
               
               
               Cow position:chr4:14920118-14919757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:260
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):33, 6

               
               
               Conread position:307-506
               
               
               Cow position:chr4:54920966-54921163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):40, 16

               
               
               Conread position:308-468
               
               
               Cow position:chr4:12135798-12135963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):18, 118

               
               
               Conread position:308-468
               
               
               Cow position:chr4:15462126-15462289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):93, 25

               
               
               Conread position:308-520
               
               
               Cow position:chr4:19324101-19323884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):17, 128

               
               
               Conread position:308-528
               
               
               Cow position:chr4:47510511-47510294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):18, 82

               
               
               Conread position:308-673
               
               
               Cow position:chr4:9815220-9815594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 38

               
               
               Conread position:308-673
               
               
               Cow position:chr4:11194310-11193940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 25

               
               
               Conread position:310-472
               
               
               Cow position:chr4:39984529-39984361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):123, 23

               
               
               Conread position:310-482
               
               
               Cow position:chr4:51920667-51920494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):114, 23

               
               
               Conread position:310-527
               
               
               Cow position:chr4:65265183-65265406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):108, 17

               
               
               Conread position:310-531
               
               
               Cow position:chr4:19098595-19098365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:177
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):107, 23

               
               
               Conread position:310-539
               
               
               Cow position:chr4:48173259-48173031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):114, 24

               
               
               Conread position:310-552
               
               
               Cow position:chr4:65950779-65950535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):19, 55

               
               
               Conread position:310-555
               
               
               Cow position:chr4:47280252-47280010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):19, 44

               
               
               Conread position:310-571
               
               
               Cow position:chr4:17084218-17084480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):108, 12

               
               
               Conread position:310-594
               
               
               Cow position:chr4:8947521-8947226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):16, 126

               
               
               Conread position:310-634
               
               
               Cow position:chr4:30792091-30791761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:244
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):114, 23

               
               
               Conread position:310-669
               
               
               Cow position:chr4:2602353-2601991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 34

               
               
               Conread position:310-671
               
               
               Cow position:chr4:45367862-45367493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 17

               
               
               Conread position:310-672
               
               
               Cow position:chr4:65650010-65650366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 109

               
               
               Conread position:310-673
               
               
               Cow position:chr4:12903945-12903576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:255
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):102, 216

               
               
               Conread position:310-673
               
               
               Cow position:chr4:37502936-37502579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:260
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):119, 86

               
               
               Conread position:310-673
               
               
               Cow position:chr4:44782497-44782132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 23

               
               
               Conread position:310-673
               
               
               Cow position:chr4:49089911-49089552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 69

               
               
               Conread position:310-673
               
               
               Cow position:chr4:51784303-51783939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 92

               
               
               Conread position:310-673
               
               
               Cow position:chr4:65815583-65815934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:254
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):17, 40

               
               
               Conread position:310-674
               
               
               Cow position:chr4:58880839-58881210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 27

               
               
               Conread position:310-675
               
               
               Cow position:chr4:44838772-44839130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 23

               
               
               Conread position:311-498
               
               
               Cow position:chr4:54541515-54541708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):11, 23

               
               
               Conread position:311-574
               
               
               Cow position:chr4:36577505-36577777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):56, 22

               
               
               Conread position:311-579
               
               
               Cow position:chr4:61313091-61313360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):114, 23

               
               
               Conread position:311-630
               
               
               Cow position:chr4:11496526-11496830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):10, 47

               
               
               Conread position:311-672
               
               
               Cow position:chr4:53100924-53100564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 124

               
               
               Conread position:311-675
               
               
               Cow position:chr4:36731314-36730946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 153

               
               
               Conread position:311-693
               
               
               Cow position:chr4:21874924-21874569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:275
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):113, 16

               
               
               Conread position:312-468
               
               
               Cow position:chr4:65131333-65131489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):102, 25

               
               
               Conread position:312-674
               
               
               Cow position:chr4:41185799-41186150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:269
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):150, 21

               
               
               Conread position:313-521
               
               
               Cow position:chr4:64657181-64657386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):13, 37

               
               
               Conread position:313-528
               
               
               Cow position:chr4:45595911-45596126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):115, 171

               
               
               Conread position:313-539
               
               
               Cow position:chr4:11380399-11380176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):210, 20

               
               
               Conread position:313-663
               
               
               Cow position:chr4:8705115-8704752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:255
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):7, 22

               
               
               Conread position:313-674
               
               
               Cow position:chr4:33433138-33433502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 20

               
               
               Conread position:315-473
               
               
               Cow position:chr4:10851333-10851490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):99, 19

               
               
               Conread position:315-668
               
               
               Cow position:chr4:7808691-7808345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 100

               
               
               Conread position:315-671
               
               
               Cow position:chr4:41300880-41301231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 18

               
               
               Conread position:315-672
               
               
               Cow position:chr4:32726343-32725981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 104

               
               
               Conread position:315-674
               
               
               Cow position:chr4:39128655-39128285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 18

               
               
               Conread position:316-467
               
               
               Cow position:chr4:17218013-17218160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):99, 17

               
               
               Conread position:316-518
               
               
               Cow position:chr4:49826369-49826166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):98, 62

               
               
               Conread position:316-673
               
               
               Cow position:chr4:20157299-20157654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 68

               
               
               Conread position:316-673
               
               
               Cow position:chr4:47348945-47348590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 117

               
               
               Conread position:317-488
               
               
               Cow position:chr4:36744694-36744526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):88, 16

               
               
               Conread position:317-568
               
               
               Cow position:chr4:34503412-34503158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):100, 150

               
               
               Conread position:317-672
               
               
               Cow position:chr4:45738359-45738725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 16

               
               
               Conread position:317-674
               
               
               Cow position:chr4:2141850-2141502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 19

               
               
               Conread position:320-557
               
               
               Cow position:chr4:55508134-55508370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):97, 6

               
               
               Conread position:320-615
               
               
               Cow position:chr4:69543297-69542989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:226
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):9, 106

               
               
               Conread position:320-622
               
               
               Cow position:chr4:65175032-65175334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 13

               
               
               Conread position:321-675
               
               
               Cow position:chr4:60897171-60897517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 16

               
               
               Conread position:322-673
               
               
               Cow position:chr4:64040227-64039866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):102, 97

               
               
               Conread position:322-675
               
               
               Cow position:chr4:43865746-43866095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 11

               
               
               Conread position:323-559
               
               
               Cow position:chr4:24481563-24481796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):82, 10

               
               
               Conread position:323-671
               
               
               Cow position:chr4:12561151-12560796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:261
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):91, 199

               
               
               Conread position:323-673
               
               
               Cow position:chr4:37935174-37935523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 115

               
               
               Conread position:324-512
               
               
               Cow position:chr4:5963880-5964069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):91, 22

               
               
               Conread position:326-672
               
               
               Cow position:chr4:63459115-63459457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 104

               
               
               Conread position:326-673
               
               
               Cow position:chr4:24001859-24002211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 41

               
               
               Conread position:327-517
               
               
               Cow position:chr4:66136501-66136691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):157, 105

               
               
               Conread position:327-587
               
               
               Cow position:chr4:51605507-51605768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):92, 29

               
               
               Conread position:328-456
               
               
               Cow position:chr4:60442937-60443064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:328-672
               
               
               Cow position:chr4:56570912-56570563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 91

               
               
               Conread position:328-673
               
               
               Cow position:chr4:46476840-46477181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 202

               
               
               Conread position:328-674
               
               
               Cow position:chr4:3850657-3850309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 110

               
               
               Conread position:329-663
               
               
               Cow position:chr4:5460757-5461092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 15

               
               
               Conread position:329-674
               
               
               Cow position:chr4:21017-20679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 90

               
               
               Conread position:331-583
               
               
               Cow position:chr4:53346434-53346170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):29, 109

               
               
               Conread position:333-650
               
               
               Cow position:chr4:46058676-46058970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:231
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):197, 55

               
               
               Conread position:334-671
               
               
               Cow position:chr4:12049346-12049003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 71

               
               
               Conread position:336-495
               
               
               Cow position:chr4:42176376-42176536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):78, 99

               
               
               Conread position:337-539
               
               
               Cow position:chr4:46183510-46183302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):82, 189

               
               
               Conread position:337-540
               
               
               Cow position:chr4:8937-9141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):81, 9

               
               
               Conread position:337-559
               
               
               Cow position:chr4:68889464-68889689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):75, 98

               
               
               Conread position:337-584
               
               
               Cow position:chr4:39609814-39609576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):81, 38

               
               
               Conread position:337-673
               
               
               Cow position:chr4:5999099-5999436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 28

               
               
               Conread position:337-673
               
               
               Cow position:chr4:8413026-8413352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:248
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):52, 104

               
               
               Conread position:337-673
               
               
               Cow position:chr4:25984317-25983986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:248
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):34, 102

               
               
               Conread position:337-673
               
               
               Cow position:chr4:61897438-61897781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 101

               
               
               Conread position:337-673
               
               
               Cow position:chr4:65179050-65179373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:241
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):11, 101

               
               
               Conread position:338-673
               
               
               Cow position:chr4:38952649-38952316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:246
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):80, 97

               
               
               Conread position:339-507
               
               
               Cow position:chr4:61478700-61478525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):75, 96

               
               
               Conread position:340-474
               
               
               Cow position:chr4:61235111-61235244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):73, 43

               
               
               Conread position:340-673
               
               
               Cow position:chr4:55395855-55395526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 41

               
               
               Conread position:343-672
               
               
               Cow position:chr4:16601972-16602293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 70

               
               
               Conread position:343-672
               
               
               Cow position:chr4:21257033-21257370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 92

               
               
               Conread position:344-673
               
               
               Cow position:chr4:66111980-66112319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 95

               
               
               Conread position:345-475
               
               
               Cow position:chr4:22196126-22196254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:346-673
               
               
               Cow position:chr4:17111786-17112119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:239
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):72, 55

               
               
               Conread position:346-674
               
               
               Cow position:chr4:20139429-20139763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 43

               
               
               Conread position:349-552
               
               
               Cow position:chr4:18107075-18107278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):70, 88

               
               
               Conread position:349-674
               
               
               Cow position:chr4:16799101-16799436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 86

               
               
               Conread position:349-684
               
               
               Cow position:chr4:65432235-65431892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:245
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):70, 175

               
               
               Conread position:353-669
               
               
               Cow position:chr4:23311184-23311503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):167, 29

               
               
               Conread position:354-667
               
               
               Cow position:chr4:11021571-11021886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):65, 85

               
               
               Conread position:355-671
               
               
               Cow position:chr4:10992123-10992443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):127, 22

               
               
               Conread position:356-594
               
               
               Cow position:chr4:44973715-44973469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):9, 84

               
               
               Conread position:356-605
               
               
               Cow position:chr4:22741338-22741590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):42, 59

               
               
               Conread position:359-632
               
               
               Cow position:chr4:11332172-11331888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:211
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):59, 83

               
               
               Conread position:359-673
               
               
               Cow position:chr4:23854255-23853962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:233
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):60, 79

               
               
               Conread position:359-673
               
               
               Cow position:chr4:51739642-51739945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:233
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):125, 56

               
               
               Conread position:362-609
               
               
               Cow position:chr4:46552265-46552502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):56, 63

               
               
               Conread position:364-678
               
               
               Cow position:chr4:33612289-33612610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 70

               
               
               Conread position:367-590
               
               
               Cow position:chr4:47041362-47041587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):63, 106

               
               
               Conread position:367-652
               
               
               Cow position:chr4:19549059-19548775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):63, 133

               
               
               Conread position:367-670
               
               
               Cow position:chr4:25359665-25359372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):46, 71

               
               
               Conread position:367-672
               
               
               Cow position:chr4:24744339-24744654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 64

               
               
               Conread position:367-675
               
               
               Cow position:chr4:19008113-19007799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:225
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):62, 156

               
               
               Conread position:367-675
               
               
               Cow position:chr4:25806966-25806655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:219
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):47, 132

               
               
               Conread position:367-675
               
               
               Cow position:chr4:34171515-34171813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):50, 58

               
               
               Conread position:368-551
               
               
               Cow position:chr4:51730016-51729834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):50, 67

               
               
               Conread position:368-614
               
               
               Cow position:chr4:59372219-59372460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):61, 98

               
               
               Conread position:368-673
               
               
               Cow position:chr4:54930356-54930658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:228
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):113, 69

               
               
               Conread position:371-673
               
               
               Cow position:chr4:10905402-10905701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):46, 113

               
               
               Conread position:373-609
               
               
               Cow position:chr4:4843183-4843429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):57, 149

               
               
               Conread position:373-672
               
               
               Cow position:chr4:15635387-15635684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):57, 151

               
               
               Conread position:373-675
               
               
               Cow position:chr4:13043324-13043026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):57, 89

               
               
               Conread position:374-674
               
               
               Cow position:chr4:638060-637754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:374-674
               
               
               Cow position:chr4:21371451-21371156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):50, 45

               
               
               Conread position:376-674
               
               
               Cow position:chr4:35939948-35940255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 97

               
               
               Conread position:377-673
               
               
               Cow position:chr4:39231464-39231765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 61

               
               
               Conread position:381-646
               
               
               Cow position:chr4:38705720-38705994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:194
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):88, 34

               
               
               Conread position:390-673
               
               
               Cow position:chr4:20299319-20299028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 48

               
               
               Conread position:390-675
               
               
               Cow position:chr4:24688301-24688593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 160

               
               
               Conread position:391-675
               
               
               Cow position:chr4:29237126-29237394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):33, 28

               
               
               Conread position:393-666
               
               
               Cow position:chr4:19463536-19463255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 8

               
               
               Conread position:397-667
               
               
               Cow position:chr4:14964814-14964544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):12, 40

               
               
               Conread position:399-624
               
               
               Cow position:chr4:19423415-19423191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):20, 35

               
               
               Conread position:399-637
               
               
               Cow position:chr4:21516968-21517215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):20, 126

               
               
               Conread position:401-673
               
               
               Cow position:chr4:63119206-63119473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):18, 41

               
               
               Conread position:401-674
               
               
               Cow position:chr4:58261117-58261397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):17, 37

               
               
               Conread position:402-672
               
               
               Cow position:chr4:11671484-11671211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 23

               
               
               Conread position:403-628
               
               
               Cow position:chr4:6413156-6413390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):34, 21

               
               
               Conread position:404-603
               
               
               Cow position:chr4:46720139-46720340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):11, 33

               
               
               Conread position:404-673
               
               
               Cow position:chr4:59105795-59106053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):12, 70

               
               
               Conread position:407-663
               
               
               Cow position:chr4:43749788-43750044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):11, 73

               
               
               Conread position:407-673
               
               
               Cow position:chr4:24118880-24119151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):9, 132

               
               
               Conread position:412-577
               
               
               Cow position:chr4:47047914-47047743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):71, 23

               
               
               Conread position:414-673
               
               
               Cow position:chr4:479991-480249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:192
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):125, 21

               
               
               Conread position:415-675
               
               
               Cow position:chr4:26746501-26746240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):15, 9

               
               
               Conread position:416-673
               
               
               Cow position:chr4:49424845-49424596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):10, 50

               
               
               Conread position:417-652
               
               
               Cow position:chr4:27687941-27687702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):66, 19

               
               
               Conread position:417-673
               
               
               Cow position:chr4:30690729-30690482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):67, 10

               
               
               Conread position:417-675
               
               
               Cow position:chr4:11901547-11901807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):61, 20

               
               
               Conread position:418-671
               
               
               Cow position:chr4:33357949-33357691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 17

               
               
               Conread position:422-673
               
               
               Cow position:chr4:43369837-43370092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):54, 13

               
               
               Conread position:424-606
               
               
               Cow position:chr4:5047333-5047510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):103, 12

               
               
               Conread position:425-670
               
               
               Cow position:chr4:56233688-56233448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):102, 10

               
               
               Conread position:428-667
               
               
               Cow position:chr4:53999506-53999743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:185
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):53, 18

               
               
               Conread position:429-674
               
               
               Cow position:chr4:16637600-16637842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):6, 56

               
               
               Conread position:434-656
               
               
               Cow position:chr4:37465598-37465809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):113, 36

               
               
               Conread position:434-665
               
               
               Cow position:chr4:41907803-41908026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:434-667
               
               
               Cow position:chr4:63813314-63813538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):137, 89

               
               
               Conread position:434-672
               
               
               Cow position:chr4:52166853-52167086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):50, 89

               
               
               Conread position:434-673
               
               
               Cow position:chr4:3475628-3475389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):45, 36

               
               
               Conread position:434-702
               
               
               Cow position:chr4:36725039-36724771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):35, 167

               
               
               Conread position:435-673
               
               
               Cow position:chr4:18576773-18577018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):39, 90

               
               
               Conread position:436-673
               
               
               Cow position:chr4:61214999-61215240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):47, 34

               
               
               Conread position:436-674
               
               
               Cow position:chr4:48137908-48137666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:186
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):48, 34

               
               
               Conread position:438-674
               
               
               Cow position:chr4:561395-561157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:178
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):36, 66

               
               
               Conread position:439-648
               
               
               Cow position:chr4:34924697-34924910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):42, 75

               
               
               Conread position:440-673
               
               
               Cow position:chr4:1237122-1237358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):44, 31

               
               
               Conread position:442-673
               
               
               Cow position:chr4:19542785-19542554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):38, 26

               
               
               Conread position:462-652
               
               
               Cow position:chr4:61869874-61870063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):87, 132

               
               
               Conread position:464-673
               
               
               Cow position:chr4:57555935-57555724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):63, 17

               
               
               Conread position:465-673
               
               
               Cow position:chr4:54501479-54501691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):18, 59

               
               
               Conread position:472-673
               
               
               Cow position:chr4:27291997-27292201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):55, 47

               
               
               Conread position:483-673
               
               
               Cow position:chr4:43542788-43542975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:483-673
               
               
               Cow position:chr4:57931861-57931668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):44, 36

               
               
               Conread position:483-692
               
               
               Cow position:chr4:46708577-46708790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):46, 32

               
               
               Conread position:485-675
               
               
               Cow position:chr4:5850382-5850576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:206-669
               
               
               Cow position:chr5:30487491-30487038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:331
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):39, 123

               
               
               Conread position:219-587
               
               
               Cow position:chr5:12434783-12434409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:267
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):195, 30

               
               
               Conread position:225-478
               
               
               Cow position:chr5:59627335-59627086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):193, 48

               
               
               Conread position:227-387
               
               
               Cow position:chr5:45854742-45854577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:227-674
               
               
               Cow position:chr5:56524403-56523963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 89

               
               
               Conread position:228-631
               
               
               Cow position:chr5:30628913-30629325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 127

               
               
               Conread position:229-610
               
               
               Cow position:chr5:12760881-12761266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:269
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):99, 129

               
               
               Conread position:229-674
               
               
               Cow position:chr5:61726195-61725759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 20

               
               
               Conread position:230-630
               
               
               Cow position:chr5:44028514-44028912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:262
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):103, 132

               
               
               Conread position:230-655
               
               
               Cow position:chr5:74610461-74610883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:282
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):10, 134

               
               
               Conread position:232-422
               
               
               Cow position:chr5:4864774-4864587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):8, 78

               
               
               Conread position:233-411
               
               
               Cow position:chr5:21339025-21339213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:233-422
               
               
               Cow position:chr5:35394204-35394389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):185, 87

               
               
               Conread position:233-429
               
               
               Cow position:chr5:3817451-3817652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:233-466
               
               
               Cow position:chr5:65552486-65552709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):185, 42

               
               
               Conread position:233-605
               
               
               Cow position:chr5:49920160-49919785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:257
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):95, 22

               
               
               Conread position:233-669
               
               
               Cow position:chr5:14903830-14904277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 53

               
               
               Conread position:234-387
               
               
               Cow position:chr5:14419783-14419930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):66, 51

               
               
               Conread position:234-387
               
               
               Cow position:chr5:17537444-17537593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):9, 56

               
               
               Conread position:234-411
               
               
               Cow position:chr5:21721243-21721414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:234-412
               
               
               Cow position:chr5:60100697-60100525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):11, 77

               
               
               Conread position:234-412
               
               
               Cow position:chr5:60154002-60153830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):9, 77

               
               
               Conread position:234-412
               
               
               Cow position:chr5:70572591-70572426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:234-420
               
               
               Cow position:chr5:57447431-57447619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):76, 18

               
               
               Conread position:234-421
               
               
               Cow position:chr5:63172815-63172998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:234-422
               
               
               Cow position:chr5:57086827-57087017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):8, 188

               
               
               Conread position:234-422
               
               
               Cow position:chr5:57399018-57399208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):92, 19

               
               
               Conread position:234-422
               
               
               Cow position:chr5:61580513-61580326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):92, 15

               
               
               Conread position:234-427
               
               
               Cow position:chr5:31648649-31648462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):108, 85

               
               
               Conread position:234-431
               
               
               Cow position:chr5:16668922-16668730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):184, 15

               
               
               Conread position:234-435
               
               
               Cow position:chr5:29172224-29172020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):36, 18

               
               
               Conread position:234-439
               
               
               Cow position:chr5:34288020-34288224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:156
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):198, 0

               
               
               Conread position:234-440
               
               
               Cow position:chr5:59336006-59335799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):94, 18

               
               
               Conread position:234-456
               
               
               Cow position:chr5:2240754-2240980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:173
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):9, 105

               
               
               Conread position:234-458
               
               
               Cow position:chr5:17828244-17828472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):84, 15

               
               
               Conread position:234-464
               
               
               Cow position:chr5:44810004-44810238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):92, 18

               
               
               Conread position:234-467
               
               
               Cow position:chr5:34347498-34347730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):9, 159

               
               
               Conread position:234-467
               
               
               Cow position:chr5:67634275-67634519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):84, 15

               
               
               Conread position:234-498
               
               
               Cow position:chr5:62812060-62811789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):92, 20

               
               
               Conread position:234-514
               
               
               Cow position:chr5:15471151-15470882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):249, 19

               
               
               Conread position:234-531
               
               
               Cow position:chr5:30247292-30247590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):92, 15

               
               
               Conread position:234-534
               
               
               Cow position:chr5:20843165-20843468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):68, 18

               
               
               Conread position:234-534
               
               
               Cow position:chr5:31475917-31475614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):92, 21

               
               
               Conread position:234-566
               
               
               Cow position:chr5:39815267-39815595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:228
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):83, 15

               
               
               Conread position:234-574
               
               
               Cow position:chr5:43403142-43402790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 15

               
               
               Conread position:234-575
               
               
               Cow position:chr5:12902152-12901800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:254
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):92, 18

               
               
               Conread position:234-610
               
               
               Cow position:chr5:66582203-66581813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:277
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):76, 19

               
               
               Conread position:234-667
               
               
               Cow position:chr5:7044471-7044914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 93

               
               
               Conread position:234-672
               
               
               Cow position:chr5:64175895-64176329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 91

               
               
               Conread position:234-672
               
               
               Cow position:chr5:74643449-74643870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 72

               
               
               Conread position:234-673
               
               
               Cow position:chr5:8023980-8024401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 43

               
               
               Conread position:234-673
               
               
               Cow position:chr5:11229438-11229883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 16

               
               
               Conread position:234-673
               
               
               Cow position:chr5:14314749-14314312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 15

               
               
               Conread position:234-673
               
               
               Cow position:chr5:14550348-14550795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 193

               
               
               Conread position:234-673
               
               
               Cow position:chr5:39447292-39447740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 15

               
               
               Conread position:234-673
               
               
               Cow position:chr5:47870821-47871260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 19

               
               
               Conread position:234-673
               
               
               Cow position:chr5:55756179-55756649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 301

               
               
               Conread position:234-673
               
               
               Cow position:chr5:57074103-57074544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 40

               
               
               Conread position:234-674
               
               
               Cow position:chr5:30253973-30253534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 15

               
               
               Conread position:234-674
               
               
               Cow position:chr5:45845455-45845906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 95

               
               
               Conread position:234-675
               
               
               Cow position:chr5:3242261-3242685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:306
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):54, 98

               
               
               Conread position:234-691
               
               
               Cow position:chr5:16893547-16894004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 13

               
               
               Conread position:235-363
               
               
               Cow position:chr5:74690020-74690150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):91, 14

               
               
               Conread position:235-381
               
               
               Cow position:chr5:74050056-74049910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):91, 14

               
               
               Conread position:235-407
               
               
               Cow position:chr5:66287176-66287005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):13, 22

               
               
               Conread position:235-422
               
               
               Cow position:chr5:12562526-12562716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):7, 85

               
               
               Conread position:235-422
               
               
               Cow position:chr5:19079475-19079296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):180, 14

               
               
               Conread position:235-422
               
               
               Cow position:chr5:37842044-37842233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):9, 183

               
               
               Conread position:235-422
               
               
               Cow position:chr5:74887667-74887856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):67, 14

               
               
               Conread position:235-452
               
               
               Cow position:chr5:73253637-73253424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):65, 14

               
               
               Conread position:235-476
               
               
               Cow position:chr5:17105077-17104842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:181
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):176, 14

               
               
               Conread position:235-528
               
               
               Cow position:chr5:7012617-7012911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):95, 18

               
               
               Conread position:235-537
               
               
               Cow position:chr5:11769505-11769196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):83, 184

               
               
               Conread position:235-539
               
               
               Cow position:chr5:36650787-36650475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:210
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):60, 18

               
               
               Conread position:235-550
               
               
               Cow position:chr5:50576000-50575700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):180, 14

               
               
               Conread position:235-588
               
               
               Cow position:chr5:49474321-49474670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 99

               
               
               Conread position:235-596
               
               
               Cow position:chr5:73167781-73168134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:263
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):47, 53

               
               
               Conread position:235-672
               
               
               Cow position:chr5:18574415-18573962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 171

               
               
               Conread position:235-673
               
               
               Cow position:chr5:28302524-28302949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 15

               
               
               Conread position:235-673
               
               
               Cow position:chr5:56028313-56028740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 14

               
               
               Conread position:235-684
               
               
               Cow position:chr5:30276919-30276471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 14

               
               
               Conread position:236-385
               
               
               Cow position:chr5:4728303-4728156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):8, 71

               
               
               Conread position:236-409
               
               
               Cow position:chr5:19626807-19626636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:236-412
               
               
               Cow position:chr5:60207938-60207763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):11, 98

               
               
               Conread position:236-422
               
               
               Cow position:chr5:54127519-54127334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):179, 87

               
               
               Conread position:236-422
               
               
               Cow position:chr5:56327495-56327677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):162, 14

               
               
               Conread position:236-430
               
               
               Cow position:chr5:15991411-15991605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):7, 85

               
               
               Conread position:236-467
               
               
               Cow position:chr5:55783729-55783952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):90, 161

               
               
               Conread position:236-520
               
               
               Cow position:chr5:20994857-20995151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):58, 44

               
               
               Conread position:236-521
               
               
               Cow position:chr5:63627308-63627582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:208
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):102, 26

               
               
               Conread position:236-614
               
               
               Cow position:chr5:72952055-72951685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:265
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):181, 13

               
               
               Conread position:236-659
               
               
               Cow position:chr5:63647245-63647670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:286
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):91, 143

               
               
               Conread position:236-672
               
               
               Cow position:chr5:47316743-47317178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 37

               
               
               Conread position:236-672
               
               
               Cow position:chr5:69338045-69337620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 13

               
               
               Conread position:236-673
               
               
               Cow position:chr5:37941573-37942002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 118

               
               
               Conread position:236-673
               
               
               Cow position:chr5:45225587-45226033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 89

               
               
               Conread position:236-674
               
               
               Cow position:chr5:30845338-30844900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 97

               
               
               Conread position:236-674
               
               
               Cow position:chr5:52164941-52165393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 140

               
               
               Conread position:236-675
               
               
               Cow position:chr5:18701989-18702424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:284
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):14, 30

               
               
               Conread position:236-677
               
               
               Cow position:chr5:38833348-38832906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 39

               
               
               Conread position:237-358
               
               
               Cow position:chr5:8149078-8149197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:96
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:237-402
               
               
               Cow position:chr5:56643300-56643132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:237-409
               
               
               Cow position:chr5:52211461-52211629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:237-412
               
               
               Cow position:chr5:74065289-74065462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):90, 101

               
               
               Conread position:237-413
               
               
               Cow position:chr5:4981677-4981504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):15, 37

               
               
               Conread position:237-422
               
               
               Cow position:chr5:742958-742775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):82, 15

               
               
               Conread position:237-423
               
               
               Cow position:chr5:16185611-16185421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:237-463
               
               
               Cow position:chr5:12300142-12299913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):19, 49

               
               
               Conread position:237-465
               
               
               Cow position:chr5:52138168-52137935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):65, 10

               
               
               Conread position:237-468
               
               
               Cow position:chr5:60514795-60515031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):33, 12

               
               
               Conread position:237-484
               
               
               Cow position:chr5:51298484-51298732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):95, 82

               
               
               Conread position:237-492
               
               
               Cow position:chr5:52108028-52108295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):89, 16

               
               
               Conread position:237-535
               
               
               Cow position:chr5:6438795-6439104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):177, 13

               
               
               Conread position:237-536
               
               
               Cow position:chr5:41935423-41935728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):15, 138

               
               
               Conread position:237-539
               
               
               Cow position:chr5:65140532-65140212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):10, 117

               
               
               Conread position:237-609
               
               
               Cow position:chr5:25495121-25495495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 16

               
               
               Conread position:237-673
               
               
               Cow position:chr5:16937804-16938217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 12

               
               
               Conread position:237-673
               
               
               Cow position:chr5:22242541-22242994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 60

               
               
               Conread position:237-674
               
               
               Cow position:chr5:32338731-32339186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 12

               
               
               Conread position:237-686
               
               
               Cow position:chr5:35145566-35145129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:320
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):78, 108

               
               
               Conread position:237-689
               
               
               Cow position:chr5:32394832-32394374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 15

               
               
               Conread position:238-387
               
               
               Cow position:chr5:58487602-58487455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:238-412
               
               
               Cow position:chr5:29599322-29599491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:238-417
               
               
               Cow position:chr5:26894482-26894669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:238-421
               
               
               Cow position:chr5:54340995-54340810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):91, 14

               
               
               Conread position:238-422
               
               
               Cow position:chr5:51012230-51012043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):88, 116

               
               
               Conread position:238-446
               
               
               Cow position:chr5:74039774-74039984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):10, 63

               
               
               Conread position:238-456
               
               
               Cow position:chr5:44196700-44196920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):175, 0

               
               
               Conread position:238-468
               
               
               Cow position:chr5:65760303-65760532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):7, 118

               
               
               Conread position:238-475
               
               
               Cow position:chr5:46540830-46541065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:178
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):167, 98

               
               
               Conread position:238-477
               
               
               Cow position:chr5:17566214-17566450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):185, 11

               
               
               Conread position:238-479
               
               
               Cow position:chr5:68537434-68537679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):90, 202

               
               
               Conread position:238-528
               
               
               Cow position:chr5:43604368-43604080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):88, 14

               
               
               Conread position:238-535
               
               
               Cow position:chr5:57372033-57371729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):88, 14

               
               
               Conread position:238-535
               
               
               Cow position:chr5:61914800-61914499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):88, 11

               
               
               Conread position:238-539
               
               
               Cow position:chr5:59384457-59384765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):57, 14

               
               
               Conread position:238-576
               
               
               Cow position:chr5:70678415-70678747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):80, 112

               
               
               Conread position:238-577
               
               
               Cow position:chr5:33560508-33560851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:238
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):181, 81

               
               
               Conread position:238-591
               
               
               Cow position:chr5:64140767-64140399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:257
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):62, 14

               
               
               Conread position:238-594
               
               
               Cow position:chr5:18289349-18288995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 87

               
               
               Conread position:238-594
               
               
               Cow position:chr5:57767759-57768117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:258
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):90, 14

               
               
               Conread position:238-602
               
               
               Cow position:chr5:19335547-19335932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:255
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):70, 127

               
               
               Conread position:238-603
               
               
               Cow position:chr5:19278472-19278843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 94

               
               
               Conread position:238-605
               
               
               Cow position:chr5:70951662-70952021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 71

               
               
               Conread position:238-609
               
               
               Cow position:chr5:17371466-17371851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:251
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):81, 14

               
               
               Conread position:238-645
               
               
               Cow position:chr5:5856089-5855698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 11

               
               
               Conread position:238-673
               
               
               Cow position:chr5:1247492-1247067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 14

               
               
               Conread position:238-673
               
               
               Cow position:chr5:24995992-24996433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 11

               
               
               Conread position:238-673
               
               
               Cow position:chr5:42064436-42063993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 14

               
               
               Conread position:238-673
               
               
               Cow position:chr5:58144374-58144813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:303
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):83, 33

               
               
               Conread position:238-675
               
               
               Cow position:chr5:24349345-24348900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:238-675
               
               
               Cow position:chr5:53055329-53055764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:298
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):88, 233

               
               
               Conread position:238-675
               
               
               Cow position:chr5:53855948-53855493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:322
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):35, 14

               
               
               Conread position:238-675
               
               
               Cow position:chr5:61576776-61576328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:297
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):102, 23

               
               
               Conread position:239-382
               
               
               Cow position:chr5:44868584-44868442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:239-405
               
               
               Cow position:chr5:5030668-5030505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):81, 47

               
               
               Conread position:239-408
               
               
               Cow position:chr5:57497197-57497365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:239-417
               
               
               Cow position:chr5:43839768-43839949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):87, 122

               
               
               Conread position:239-418
               
               
               Cow position:chr5:58401794-58401618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:239-421
               
               
               Cow position:chr5:48061879-48062072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):21, 121

               
               
               Conread position:239-427
               
               
               Cow position:chr5:8736048-8736242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):99, 158

               
               
               Conread position:239-427
               
               
               Cow position:chr5:40122379-40122570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:239-434
               
               
               Cow position:chr5:56434112-56433915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):85, 183

               
               
               Conread position:239-480
               
               
               Cow position:chr5:5760080-5760328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):68, 140

               
               
               Conread position:239-506
               
               
               Cow position:chr5:50101149-50101420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):157, 80

               
               
               Conread position:239-509
               
               
               Cow position:chr5:52001395-52001666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):61, 34

               
               
               Conread position:239-568
               
               
               Cow position:chr5:43370964-43371306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):81, 119

               
               
               Conread position:239-600
               
               
               Cow position:chr5:29097591-29097219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:251
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):191, 71

               
               
               Conread position:239-637
               
               
               Cow position:chr5:52668268-52667854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:271
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):87, 115

               
               
               Conread position:239-650
               
               
               Cow position:chr5:60952891-60952474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:276
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):62, 57

               
               
               Conread position:239-652
               
               
               Cow position:chr5:30178273-30178699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:281
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):79, 119

               
               
               Conread position:239-672
               
               
               Cow position:chr5:58700-59137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 117

               
               
               Conread position:239-673
               
               
               Cow position:chr5:17999267-17999704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 96

               
               
               Conread position:239-673
               
               
               Cow position:chr5:31096574-31097013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:281
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):70, 13

               
               
               Conread position:239-673
               
               
               Cow position:chr5:41165311-41164879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 81

               
               
               Conread position:239-673
               
               
               Cow position:chr5:44847798-44848226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 80

               
               
               Conread position:239-675
               
               
               Cow position:chr5:11427007-11427453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 34

               
               
               Conread position:239-675
               
               
               Cow position:chr5:35208492-35208050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 196

               
               
               Conread position:239-675
               
               
               Cow position:chr5:40889066-40889495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:291
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):94, 236

               
               
               Conread position:240-387
               
               
               Cow position:chr5:6245438-6245583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:240-387
               
               
               Cow position:chr5:12504566-12504710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:240-387
               
               
               Cow position:chr5:34639352-34639202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:240-387
               
               
               Cow position:chr5:69765806-69765954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:240-394
               
               
               Cow position:chr5:31234932-31234785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:240-396
               
               
               Cow position:chr5:64061241-64061090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:240-407
               
               
               Cow position:chr5:63300306-63300138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):95, 79

               
               
               Conread position:240-408
               
               
               Cow position:chr5:25462311-25462147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:240-412
               
               
               Cow position:chr5:29895399-29895226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:240-416
               
               
               Cow position:chr5:40531304-40531487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):34, 176

               
               
               Conread position:240-417
               
               
               Cow position:chr5:34787800-34787624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:240-422
               
               
               Cow position:chr5:3677956-3677767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):70, 174

               
               
               Conread position:240-422
               
               
               Cow position:chr5:7675930-7676111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):179, 86

               
               
               Conread position:240-422
               
               
               Cow position:chr5:49821659-49821472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:240-425
               
               
               Cow position:chr5:6086113-6086299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):99, 184

               
               
               Conread position:240-447
               
               
               Cow position:chr5:54312827-54312619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):86, 16

               
               
               Conread position:240-449
               
               
               Cow position:chr5:26167647-26167437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):172, 15

               
               
               Conread position:240-450
               
               
               Cow position:chr5:26147816-26147606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):174, 15

               
               
               Conread position:240-451
               
               
               Cow position:chr5:57303001-57302782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):76, 188

               
               
               Conread position:240-452
               
               
               Cow position:chr5:70271095-70270880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):84, 195

               
               
               Conread position:240-455
               
               
               Cow position:chr5:75227985-75228189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):174, 46

               
               
               Conread position:240-467
               
               
               Cow position:chr5:6520234-6520009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):156, 84

               
               
               Conread position:240-468
               
               
               Cow position:chr5:55965664-55965897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):78, 198

               
               
               Conread position:240-468
               
               
               Cow position:chr5:57062301-57062532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):60, 13

               
               
               Conread position:240-468
               
               
               Cow position:chr5:57489728-57489948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):36, 47

               
               
               Conread position:240-469
               
               
               Cow position:chr5:51065743-51065526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):178, 87

               
               
               Conread position:240-471
               
               
               Cow position:chr5:22795434-22795209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):218, 35

               
               
               Conread position:240-472
               
               
               Cow position:chr5:33273925-33273689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:182
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):80, 198

               
               
               Conread position:240-473
               
               
               Cow position:chr5:69383479-69383247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 93

               
               
               Conread position:240-478
               
               
               Cow position:chr5:50824811-50824579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):174, 82

               
               
               Conread position:240-485
               
               
               Cow position:chr5:39036010-39035759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:194
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):69, 118

               
               
               Conread position:240-486
               
               
               Cow position:chr5:56860671-56860423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):86, 150

               
               
               Conread position:240-493
               
               
               Cow position:chr5:2827602-2827344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):60, 12

               
               
               Conread position:240-505
               
               
               Cow position:chr5:49341807-49342090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):73, 110

               
               
               Conread position:240-518
               
               
               Cow position:chr5:36839175-36838908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):178, 45

               
               
               Conread position:240-521
               
               
               Cow position:chr5:61456075-61455788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:209
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):29, 102

               
               
               Conread position:240-531
               
               
               Cow position:chr5:59626745-59627040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 9

               
               
               Conread position:240-535
               
               
               Cow position:chr5:50713522-50713842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:218
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):69, 102

               
               
               Conread position:240-539
               
               
               Cow position:chr5:19752529-19752230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 88

               
               
               Conread position:240-539
               
               
               Cow position:chr5:35976722-35976446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):176, 78

               
               
               Conread position:240-539
               
               
               Cow position:chr5:57526700-57526993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):88, 13

               
               
               Conread position:240-557
               
               
               Cow position:chr5:36038777-36039101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 52

               
               
               Conread position:240-573
               
               
               Cow position:chr5:13717332-13717684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):46, 116

               
               
               Conread position:240-575
               
               
               Cow position:chr5:59395893-59395546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):12, 115

               
               
               Conread position:240-579
               
               
               Cow position:chr5:16179294-16179644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:255
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):10, 80

               
               
               Conread position:240-581
               
               
               Cow position:chr5:12557059-12557410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 202

               
               
               Conread position:240-603
               
               
               Cow position:chr5:42670645-42670998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:262
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):178, 46

               
               
               Conread position:240-607
               
               
               Cow position:chr5:7057169-7057547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:269
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):86, 153

               
               
               Conread position:240-620
               
               
               Cow position:chr5:42050772-42050391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:269
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):178, 46

               
               
               Conread position:240-630
               
               
               Cow position:chr5:44028083-44028468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 13

               
               
               Conread position:240-633
               
               
               Cow position:chr5:66972658-66972253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 90

               
               
               Conread position:240-634
               
               
               Cow position:chr5:55956138-55955735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 88

               
               
               Conread position:240-640
               
               
               Cow position:chr5:74581014-74580617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 25

               
               
               Conread position:240-648
               
               
               Cow position:chr5:46512540-46512951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 36

               
               
               Conread position:240-662
               
               
               Cow position:chr5:50942932-50943352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 82

               
               
               Conread position:240-667
               
               
               Cow position:chr5:53835949-53835511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 146

               
               
               Conread position:240-670
               
               
               Cow position:chr5:1687889-1688319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:280
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):84, 13

               
               
               Conread position:240-670
               
               
               Cow position:chr5:9893897-9894332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 44

               
               
               Conread position:240-671
               
               
               Cow position:chr5:21617683-21617248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 88

               
               
               Conread position:240-671
               
               
               Cow position:chr5:72895914-72895485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:287
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):89, 195

               
               
               Conread position:240-672
               
               
               Cow position:chr5:4280673-4280255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 81

               
               
               Conread position:240-672
               
               
               Cow position:chr5:29828276-29827845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 117

               
               
               Conread position:240-672
               
               
               Cow position:chr5:29903315-29903730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 46

               
               
               Conread position:240-673
               
               
               Cow position:chr5:6528893-6528471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 37

               
               
               Conread position:240-673
               
               
               Cow position:chr5:16025255-16025670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):241, 46

               
               
               Conread position:240-673
               
               
               Cow position:chr5:17086790-17087238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 10

               
               
               Conread position:240-673
               
               
               Cow position:chr5:20128283-20127845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 45

               
               
               Conread position:240-673
               
               
               Cow position:chr5:26262457-26262883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):243, 68

               
               
               Conread position:240-673
               
               
               Cow position:chr5:35969768-35969333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 193

               
               
               Conread position:240-673
               
               
               Cow position:chr5:36855433-36855003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 45

               
               
               Conread position:240-673
               
               
               Cow position:chr5:40152715-40152266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:288
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):86, 118

               
               
               Conread position:240-673
               
               
               Cow position:chr5:43858190-43858637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 159

               
               
               Conread position:240-673
               
               
               Cow position:chr5:43922942-43923359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 47

               
               
               Conread position:240-673
               
               
               Cow position:chr5:47756999-47756559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:292
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):86, 13

               
               
               Conread position:240-673
               
               
               Cow position:chr5:57934892-57935323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 67

               
               
               Conread position:240-673
               
               
               Cow position:chr5:64321989-64321539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 66

               
               
               Conread position:240-673
               
               
               Cow position:chr5:65941022-65941463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 108

               
               
               Conread position:240-674
               
               
               Cow position:chr5:44796508-44796929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 57

               
               
               Conread position:240-674
               
               
               Cow position:chr5:44993811-44994248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 183

               
               
               Conread position:240-674
               
               
               Cow position:chr5:47602036-47601606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 46

               
               
               Conread position:240-675
               
               
               Cow position:chr5:5257059-5257508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 91

               
               
               Conread position:240-675
               
               
               Cow position:chr5:36868965-36868534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 133

               
               
               Conread position:240-675
               
               
               Cow position:chr5:66257862-66257431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 83

               
               
               Conread position:240-684
               
               
               Cow position:chr5:28224670-28224234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 67

               
               
               Conread position:240-687
               
               
               Cow position:chr5:17028303-17027871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 12

               
               
               Conread position:240-687
               
               
               Cow position:chr5:55177109-55176662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 45

               
               
               Conread position:240-691
               
               
               Cow position:chr5:35685161-35684706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 35

               
               
               Conread position:241-412
               
               
               Cow position:chr5:34918569-34918401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:241-412
               
               
               Cow position:chr5:37253649-37253484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:241-421
               
               
               Cow position:chr5:19052563-19052746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):11, 45

               
               
               Conread position:241-426
               
               
               Cow position:chr5:24915297-24915486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:241-450
               
               
               Cow position:chr5:7177380-7177166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:241-458
               
               
               Cow position:chr5:60948359-60948140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):82, 94

               
               
               Conread position:241-463
               
               
               Cow position:chr5:11562501-11562721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):183, 24

               
               
               Conread position:241-473
               
               
               Cow position:chr5:26548916-26549148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:176
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):177, 86

               
               
               Conread position:241-473
               
               
               Cow position:chr5:56613336-56613573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):90, 200

               
               
               Conread position:241-476
               
               
               Cow position:chr5:34914827-34915064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:180
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):35, 93

               
               
               Conread position:241-597
               
               
               Cow position:chr5:50901126-50900767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:242
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):125, 44

               
               
               Conread position:241-622
               
               
               Cow position:chr5:3582782-3582414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 94

               
               
               Conread position:241-637
               
               
               Cow position:chr5:19778339-19778757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:273
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):66, 118

               
               
               Conread position:241-640
               
               
               Cow position:chr5:34625175-34624792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 75

               
               
               Conread position:241-673
               
               
               Cow position:chr5:50723275-50722841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 186

               
               
               Conread position:241-674
               
               
               Cow position:chr5:11667957-11668389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 200

               
               
               Conread position:241-674
               
               
               Cow position:chr5:67932238-67932672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 186

               
               
               Conread position:241-686
               
               
               Cow position:chr5:30303108-30302675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 84

               
               
               Conread position:242-405
               
               
               Cow position:chr5:67340107-67339945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:242-406
               
               
               Cow position:chr5:59662831-59662997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:242-407
               
               
               Cow position:chr5:22957629-22957470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:242-412
               
               
               Cow position:chr5:49207103-49207272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:242-417
               
               
               Cow position:chr5:62996185-62996007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:242-417
               
               
               Cow position:chr5:64843738-64843921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:242-422
               
               
               Cow position:chr5:6876740-6876924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):73, 7

               
               
               Conread position:242-422
               
               
               Cow position:chr5:56477431-56477249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):82, 11

               
               
               Conread position:242-442
               
               
               Cow position:chr5:51289375-51289568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-466
               
               
               Cow position:chr5:52853193-52852970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):173, 79

               
               
               Conread position:242-557
               
               
               Cow position:chr5:30233135-30232802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):76, 10

               
               
               Conread position:242-557
               
               
               Cow position:chr5:33834266-33833948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):86, 131

               
               
               Conread position:242-559
               
               
               Cow position:chr5:56548792-56548479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):143, 72

               
               
               Conread position:242-602
               
               
               Cow position:chr5:25035028-25035384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 178

               
               
               Conread position:242-613
               
               
               Cow position:chr5:57101571-57101927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:265
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):130, 29

               
               
               Conread position:242-633
               
               
               Cow position:chr5:41009784-41010166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 96

               
               
               Conread position:242-634
               
               
               Cow position:chr5:56014948-56014564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 65

               
               
               Conread position:242-668
               
               
               Cow position:chr5:44446649-44447092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 65

               
               
               Conread position:242-671
               
               
               Cow position:chr5:2309332-2309771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 105

               
               
               Conread position:242-674
               
               
               Cow position:chr5:39937342-39936892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 18

               
               
               Conread position:242-682
               
               
               Cow position:chr5:71768282-71768679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:296
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):84, 43

               
               
               Conread position:243-506
               
               
               Cow position:chr5:69099944-69099676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):175, 192

               
               
               Conread position:243-673
               
               
               Cow position:chr5:3772067-3771637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 67

               
               
               Conread position:243-673
               
               
               Cow position:chr5:21829089-21828655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 30

               
               
               Conread position:245-456
               
               
               Cow position:chr5:44722290-44722504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):84, 136

               
               
               Conread position:245-473
               
               
               Cow position:chr5:4267883-4267662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):173, 52

               
               
               Conread position:245-476
               
               
               Cow position:chr5:60523950-60523722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:178
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):160, 64

               
               
               Conread position:245-528
               
               
               Cow position:chr5:30805372-30805105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):174, 29

               
               
               Conread position:245-539
               
               
               Cow position:chr5:41885137-41884861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):170, 83

               
               
               Conread position:245-600
               
               
               Cow position:chr5:16214904-16214547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:257
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):89, 40

               
               
               Conread position:246-394
               
               
               Cow position:chr5:15077412-15077561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:246-415
               
               
               Cow position:chr5:63763887-63763716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):80, 152

               
               
               Conread position:246-465
               
               
               Cow position:chr5:53935332-53935547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):178, 71

               
               
               Conread position:246-475
               
               
               Cow position:chr5:18062088-18062330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):61, 93

               
               
               Conread position:246-539
               
               
               Cow position:chr5:57755812-57756106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:218
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):82, 57

               
               
               Conread position:246-565
               
               
               Cow position:chr5:14920704-14921035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):63, 193

               
               
               Conread position:246-600
               
               
               Cow position:chr5:11539830-11540188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:246
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):81, 107

               
               
               Conread position:246-650
               
               
               Cow position:chr5:29060717-29061111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:282
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):218, 79

               
               
               Conread position:246-673
               
               
               Cow position:chr5:40109706-40109292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 61

               
               
               Conread position:246-673
               
               
               Cow position:chr5:62172620-62172209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 30

               
               
               Conread position:246-687
               
               
               Cow position:chr5:56467892-56467477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:316
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):173, 38

               
               
               Conread position:249-417
               
               
               Cow position:chr5:44734508-44734675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:249-533
               
               
               Cow position:chr5:66551673-66551968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:209
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):46, 90

               
               
               Conread position:249-593
               
               
               Cow position:chr5:22667289-22666960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):169, 175

               
               
               Conread position:249-647
               
               
               Cow position:chr5:65136476-65136100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:264
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:249-663
               
               
               Cow position:chr5:50600265-50599858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 37

               
               
               Conread position:249-672
               
               
               Cow position:chr5:20779180-20779590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):231, 183

               
               
               Conread position:249-673
               
               
               Cow position:chr5:26990606-26990184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 43

               
               
               Conread position:249-673
               
               
               Cow position:chr5:55966654-55967092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 108

               
               
               Conread position:249-673
               
               
               Cow position:chr5:65776158-65776595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 88

               
               
               Conread position:249-673
               
               
               Cow position:chr5:67212576-67212169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:274
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):170, 64

               
               
               Conread position:249-673
               
               
               Cow position:chr5:72045458-72045850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:301
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):76, 16

               
               
               Conread position:250-479
               
               
               Cow position:chr5:57101308-57101537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:178
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):178, 83

               
               
               Conread position:250-503
               
               
               Cow position:chr5:20288040-20288303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):74, 187

               
               
               Conread position:250-605
               
               
               Cow position:chr5:55232605-55232938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):100, 20

               
               
               Conread position:250-671
               
               
               Cow position:chr5:51053430-51053855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 210

               
               
               Conread position:250-672
               
               
               Cow position:chr5:47696242-47696659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 35

               
               
               Conread position:250-672
               
               
               Cow position:chr5:56071076-56070644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 185

               
               
               Conread position:250-674
               
               
               Cow position:chr5:58856321-58855893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 11

               
               
               Conread position:251-464
               
               
               Cow position:chr5:52723792-52723578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):66, 109

               
               
               Conread position:251-468
               
               
               Cow position:chr5:30562145-30561929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):166, 73

               
               
               Conread position:251-571
               
               
               Cow position:chr5:53947116-53946782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):75, 176

               
               
               Conread position:252-422
               
               
               Cow position:chr5:53779371-53779199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:252-672
               
               
               Cow position:chr5:54875477-54875889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:286
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):76, 217

               
               
               Conread position:253-418
               
               
               Cow position:chr5:42753111-42752953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):152, 54

               
               
               Conread position:253-452
               
               
               Cow position:chr5:55942162-55942366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):75, 185

               
               
               Conread position:253-467
               
               
               Cow position:chr5:48867255-48867466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):47, 32

               
               
               Conread position:253-557
               
               
               Cow position:chr5:17554820-17555123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):76, 62

               
               
               Conread position:253-672
               
               
               Cow position:chr5:17062864-17063302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 203

               
               
               Conread position:253-673
               
               
               Cow position:chr5:64523649-64524089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 182

               
               
               Conread position:254-427
               
               
               Cow position:chr5:53980538-53980714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):72, 168

               
               
               Conread position:254-439
               
               
               Cow position:chr5:65745554-65745736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:254-535
               
               
               Cow position:chr5:63234609-63234897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 172

               
               
               Conread position:254-624
               
               
               Cow position:chr5:45397779-45397418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 22

               
               
               Conread position:254-673
               
               
               Cow position:chr5:26377466-26377876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 73

               
               
               Conread position:254-673
               
               
               Cow position:chr5:57328011-57327580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:296
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):162, 55

               
               
               Conread position:255-572
               
               
               Cow position:chr5:60016377-60016055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):229, 176

               
               
               Conread position:257-417
               
               
               Cow position:chr5:7139630-7139783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:257-434
               
               
               Cow position:chr5:38040357-38040534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):159, 67

               
               
               Conread position:257-449
               
               
               Cow position:chr5:5847633-5847829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):28, 80

               
               
               Conread position:257-463
               
               
               Cow position:chr5:36143189-36142989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):88, 19

               
               
               Conread position:257-506
               
               
               Cow position:chr5:72006286-72006535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):161, 19

               
               
               Conread position:257-617
               
               
               Cow position:chr5:12673269-12673618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 87

               
               
               Conread position:257-673
               
               
               Cow position:chr5:37646286-37645864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 28

               
               
               Conread position:257-673
               
               
               Cow position:chr5:66815380-66815785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:295
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):167, 10

               
               
               Conread position:257-674
               
               
               Cow position:chr5:29352921-29353340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 28

               
               
               Conread position:258-417
               
               
               Cow position:chr5:19294309-19294476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):49, 98

               
               
               Conread position:258-673
               
               
               Cow position:chr5:15721878-15722263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 18

               
               
               Conread position:258-673
               
               
               Cow position:chr5:44053836-44054247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 134

               
               
               Conread position:259-471
               
               
               Cow position:chr5:25598038-25597830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):146, 65

               
               
               Conread position:259-478
               
               
               Cow position:chr5:16939383-16939609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):41, 26

               
               
               Conread position:259-616
               
               
               Cow position:chr5:17767944-17768299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:237
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):176, 21

               
               
               Conread position:259-652
               
               
               Cow position:chr5:69461541-69461146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 14

               
               
               Conread position:259-675
               
               
               Cow position:chr5:34050317-34049898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:285
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):170, 76

               
               
               Conread position:259-675
               
               
               Cow position:chr5:35826807-35826379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 67

               
               
               Conread position:260-673
               
               
               Cow position:chr5:65753068-65752647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 88

               
               
               Conread position:261-502
               
               
               Cow position:chr5:49501611-49501863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):67, 181

               
               
               Conread position:261-530
               
               
               Cow position:chr5:45419934-45420199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):12, 8

               
               
               Conread position:261-591
               
               
               Cow position:chr5:41713495-41713170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:246
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):116, 26

               
               
               Conread position:262-422
               
               
               Cow position:chr5:51125812-51125965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):154, 45

               
               
               Conread position:262-594
               
               
               Cow position:chr5:57419590-57419925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:231
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):157, 72

               
               
               Conread position:262-629
               
               
               Cow position:chr5:65967527-65967897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 71

               
               
               Conread position:262-675
               
               
               Cow position:chr5:6503670-6504091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 102

               
               
               Conread position:263-667
               
               
               Cow position:chr5:50482653-50483065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:278
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):64, 91

               
               
               Conread position:265-424
               
               
               Cow position:chr5:32935948-32935788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):49, 118

               
               
               Conread position:265-601
               
               
               Cow position:chr5:64026812-64027149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 175

               
               
               Conread position:265-642
               
               
               Cow position:chr5:57265699-57266076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:251
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):74, 260

               
               
               Conread position:266-520
               
               
               Cow position:chr5:55795768-55796017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:193
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):139, 60

               
               
               Conread position:267-500
               
               
               Cow position:chr5:57686540-57686777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:185
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):146, 51

               
               
               Conread position:267-675
               
               
               Cow position:chr5:47703924-47704346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:279
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):66, 92

               
               
               Conread position:269-509
               
               
               Cow position:chr5:65679773-65680013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):11, 149

               
               
               Conread position:272-461
               
               
               Cow position:chr5:38169089-38168898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):86, 62

               
               
               Conread position:275-539
               
               
               Cow position:chr5:55019487-55019220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):24, 152

               
               
               Conread position:278-574
               
               
               Cow position:chr5:38076297-38076597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:202
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):152, 7

               
               
               Conread position:280-673
               
               
               Cow position:chr5:71495010-71494607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 151

               
               
               Conread position:281-505
               
               
               Cow position:chr5:17602018-17602242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):48, 142

               
               
               Conread position:281-675
               
               
               Cow position:chr5:28248362-28247965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:271
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):57, 79

               
               
               Conread position:282-674
               
               
               Cow position:chr5:7193599-7193221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:273
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):136, 45

               
               
               Conread position:286-579
               
               
               Cow position:chr5:26476837-26477131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):23, 48

               
               
               Conread position:286-590
               
               
               Cow position:chr5:44726154-44726456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):23, 36

               
               
               Conread position:286-686
               
               
               Cow position:chr5:4709973-4710365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 16

               
               
               Conread position:295-491
               
               
               Cow position:chr5:61875707-61875515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):189, 15

               
               
               Conread position:295-673
               
               
               Cow position:chr5:37646375-37646760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 25

               
               
               Conread position:296-433
               
               
               Cow position:chr5:60126860-60126723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):121, 37

               
               
               Conread position:298-634
               
               
               Cow position:chr5:59115549-59115210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:240
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):225, 55

               
               
               Conread position:299-636
               
               
               Cow position:chr5:23529111-23529451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:247
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):10, 61

               
               
               Conread position:301-533
               
               
               Cow position:chr5:67118585-67118348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):116, 32

               
               
               Conread position:301-666
               
               
               Cow position:chr5:26093997-26094372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:261
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):18, 127

               
               
               Conread position:301-673
               
               
               Cow position:chr5:34887030-34887407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:250
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):68, 55

               
               
               Conread position:302-652
               
               
               Cow position:chr5:48009694-48010035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:252
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):15, 43

               
               
               Conread position:302-671
               
               
               Cow position:chr5:71454444-71454802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:260
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):14, 132

               
               
               Conread position:302-673
               
               
               Cow position:chr5:27411233-27411599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):13, 120

               
               
               Conread position:306-491
               
               
               Cow position:chr5:57230178-57230367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):112, 5

               
               
               Conread position:306-673
               
               
               Cow position:chr5:6683210-6683557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:265
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):221, 18

               
               
               Conread position:306-673
               
               
               Cow position:chr5:21039825-21040183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:266
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):160, 15

               
               
               Conread position:307-579
               
               
               Cow position:chr5:49440706-49440991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):16, 133

               
               
               Conread position:307-598
               
               
               Cow position:chr5:14473242-14473551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):22, 227

               
               
               Conread position:308-517
               
               
               Cow position:chr5:24136872-24136660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):104, 25

               
               
               Conread position:308-572
               
               
               Cow position:chr5:7698158-7697893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:196
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):106, 25

               
               
               Conread position:308-572
               
               
               Cow position:chr5:58446966-58446691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):107, 127

               
               
               Conread position:308-672
               
               
               Cow position:chr5:458646-458273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 25

               
               
               Conread position:308-673
               
               
               Cow position:chr5:68605011-68604649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):83, 41

               
               
               Conread position:310-440
               
               
               Cow position:chr5:51490444-51490577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):28, 126

               
               
               Conread position:310-469
               
               
               Cow position:chr5:51490091-51490249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):125, 109

               
               
               Conread position:310-469
               
               
               Cow position:chr5:55129499-55129339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):105, 23

               
               
               Conread position:310-478
               
               
               Cow position:chr5:9369115-9369283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):114, 24

               
               
               Conread position:310-505
               
               
               Cow position:chr5:56212062-56211860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):100, 121

               
               
               Conread position:310-520
               
               
               Cow position:chr5:56338865-56339074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):104, 23

               
               
               Conread position:310-534
               
               
               Cow position:chr5:41981524-41981300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):173, 23

               
               
               Conread position:310-537
               
               
               Cow position:chr5:29912577-29912346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):93, 50

               
               
               Conread position:310-577
               
               
               Cow position:chr5:53710533-53710811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):105, 27

               
               
               Conread position:310-598
               
               
               Cow position:chr5:40242200-40241913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):108, 67

               
               
               Conread position:310-600
               
               
               Cow position:chr5:7755414-7755702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:217
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):102, 34

               
               
               Conread position:310-610
               
               
               Cow position:chr5:16205999-16206306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 23

               
               
               Conread position:310-623
               
               
               Cow position:chr5:54060432-54060114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 24

               
               
               Conread position:310-671
               
               
               Cow position:chr5:43929580-43929941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 23

               
               
               Conread position:310-673
               
               
               Cow position:chr5:3204980-3204626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:257
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):114, 14

               
               
               Conread position:310-673
               
               
               Cow position:chr5:5110913-5111286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 34

               
               
               Conread position:310-673
               
               
               Cow position:chr5:43992482-43992116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 115

               
               
               Conread position:310-673
               
               
               Cow position:chr5:46509708-46510076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 125

               
               
               Conread position:310-674
               
               
               Cow position:chr5:9089870-9090234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 54

               
               
               Conread position:311-469
               
               
               Cow position:chr5:24069544-24069386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):18, 26

               
               
               Conread position:311-552
               
               
               Cow position:chr5:59872925-59873178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):106, 23

               
               
               Conread position:311-592
               
               
               Cow position:chr5:54767754-54768042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 22

               
               
               Conread position:311-595
               
               
               Cow position:chr5:64591940-64592227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):106, 22

               
               
               Conread position:311-652
               
               
               Cow position:chr5:4221132-4220792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 21

               
               
               Conread position:311-672
               
               
               Cow position:chr5:63987290-63987656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 90

               
               
               Conread position:311-673
               
               
               Cow position:chr5:4031831-4032198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 22

               
               
               Conread position:311-673
               
               
               Cow position:chr5:34301075-34300717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 103

               
               
               Conread position:312-671
               
               
               Cow position:chr5:37378008-37377668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:258
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):80, 108

               
               
               Conread position:313-537
               
               
               Cow position:chr5:69636377-69636162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):104, 14

               
               
               Conread position:313-565
               
               
               Cow position:chr5:62378933-62378686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):105, 20

               
               
               Conread position:313-570
               
               
               Cow position:chr5:23678550-23678814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):97, 21

               
               
               Conread position:313-570
               
               
               Cow position:chr5:60183959-60183691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:201
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):104, 124

               
               
               Conread position:313-591
               
               
               Cow position:chr5:63426852-63427137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):103, 8

               
               
               Conread position:313-630
               
               
               Cow position:chr5:30949762-30950086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 20

               
               
               Conread position:313-674
               
               
               Cow position:chr5:13537288-13536946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:248
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):11, 76

               
               
               Conread position:313-687
               
               
               Cow position:chr5:41545740-41546117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 20

               
               
               Conread position:314-486
               
               
               Cow position:chr5:56334360-56334529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):104, 20

               
               
               Conread position:314-559
               
               
               Cow position:chr5:41294233-41293981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):31, 19

               
               
               Conread position:314-592
               
               
               Cow position:chr5:45273350-45273633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):110, 19

               
               
               Conread position:314-600
               
               
               Cow position:chr5:45574772-45574481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):100, 23

               
               
               Conread position:314-669
               
               
               Cow position:chr5:37189945-37190305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 42

               
               
               Conread position:314-672
               
               
               Cow position:chr5:64758615-64758972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 23

               
               
               Conread position:315-467
               
               
               Cow position:chr5:9170429-9170583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):16, 67

               
               
               Conread position:315-559
               
               
               Cow position:chr5:35126206-35125954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):114, 35

               
               
               Conread position:315-645
               
               
               Cow position:chr5:37808512-37808846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:244
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):103, 18

               
               
               Conread position:316-452
               
               
               Cow position:chr5:35647495-35647356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:112
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):10, 120

               
               
               Conread position:316-556
               
               
               Cow position:chr5:54375352-54375603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):93, 17

               
               
               Conread position:316-673
               
               
               Cow position:chr5:49685127-49685490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 17

               
               
               Conread position:316-673
               
               
               Cow position:chr5:54350211-54350570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:263
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):103, 17

               
               
               Conread position:316-675
               
               
               Cow position:chr5:67244068-67243713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 11

               
               
               Conread position:317-633
               
               
               Cow position:chr5:56317438-56317125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 16

               
               
               Conread position:318-509
               
               
               Cow position:chr5:56517253-56517057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):96, 84

               
               
               Conread position:318-605
               
               
               Cow position:chr5:20422046-20422324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):86, 18

               
               
               Conread position:318-673
               
               
               Cow position:chr5:34528694-34528352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 15

               
               
               Conread position:318-673
               
               
               Cow position:chr5:59325693-59326038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):99, 124

               
               
               Conread position:319-669
               
               
               Cow position:chr5:22643083-22643424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 79

               
               
               Conread position:320-422
               
               
               Cow position:chr5:1946978-1946875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:85
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:320-586
               
               
               Cow position:chr5:56680404-56680121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):12, 209

               
               
               Conread position:320-661
               
               
               Cow position:chr5:69731646-69731320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:251
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):151, 13

               
               
               Conread position:321-645
               
               
               Cow position:chr5:47323607-47323269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:250
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):103, 12

               
               
               Conread position:321-672
               
               
               Cow position:chr5:6045441-6045079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 13

               
               
               Conread position:321-673
               
               
               Cow position:chr5:46322656-46323021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 99

               
               
               Conread position:321-673
               
               
               Cow position:chr5:57737244-57736905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 14

               
               
               Conread position:322-518
               
               
               Cow position:chr5:35982591-35982793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):13, 115

               
               
               Conread position:322-672
               
               
               Cow position:chr5:29771672-29771306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 11

               
               
               Conread position:323-474
               
               
               Cow position:chr5:9233845-9234000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):25, 11

               
               
               Conread position:323-669
               
               
               Cow position:chr5:359794-360152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:240
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):15, 35

               
               
               Conread position:324-489
               
               
               Cow position:chr5:63656621-63656453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:324-587
               
               
               Cow position:chr5:60747138-60747403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:193
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):152, 43

               
               
               Conread position:325-515
               
               
               Cow position:chr5:22446050-22445863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):54, 15

               
               
               Conread position:325-671
               
               
               Cow position:chr5:50533246-50533590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 88

               
               
               Conread position:327-531
               
               
               Cow position:chr5:76366155-76366366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:327-650
               
               
               Cow position:chr5:7723805-7723484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):92, 108

               
               
               Conread position:328-634
               
               
               Cow position:chr5:41452533-41452837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 72

               
               
               Conread position:328-672
               
               
               Cow position:chr5:8820874-8821220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 109

               
               
               Conread position:328-674
               
               
               Cow position:chr5:72564903-72564551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 110

               
               
               Conread position:330-670
               
               
               Cow position:chr5:20783759-20783418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 110

               
               
               Conread position:330-671
               
               
               Cow position:chr5:37814763-37814416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 108

               
               
               Conread position:331-641
               
               
               Cow position:chr5:51935325-51935005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:229
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):93, 59

               
               
               Conread position:331-673
               
               
               Cow position:chr5:4218993-4218668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 37

               
               
               Conread position:331-673
               
               
               Cow position:chr5:62142812-62142461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 94

               
               
               Conread position:331-673
               
               
               Cow position:chr5:65932807-65933137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:252
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):196, 88

               
               
               Conread position:332-674
               
               
               Cow position:chr5:52000353-52000008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 50

               
               
               Conread position:336-503
               
               
               Cow position:chr5:61102847-61102675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:337-463
               
               
               Cow position:chr5:26253043-26253171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:103
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):76, 98

               
               
               Conread position:337-492
               
               
               Cow position:chr5:45574235-45574396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):78, 98

               
               
               Conread position:337-508
               
               
               Cow position:chr5:40237341-40237169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):81, 111

               
               
               Conread position:337-528
               
               
               Cow position:chr5:1461219-1461024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):82, 101

               
               
               Conread position:337-575
               
               
               Cow position:chr5:27171863-27172095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):193, 77

               
               
               Conread position:337-671
               
               
               Cow position:chr5:57626918-57626599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:234
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):114, 43

               
               
               Conread position:337-673
               
               
               Cow position:chr5:15598108-15598443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 40

               
               
               Conread position:337-673
               
               
               Cow position:chr5:19813090-19813420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:248
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):82, 101

               
               
               Conread position:337-673
               
               
               Cow position:chr5:63992042-63992372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:235
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):77, 95

               
               
               Conread position:337-675
               
               
               Cow position:chr5:28927464-28927804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 63

               
               
               Conread position:337-676
               
               
               Cow position:chr5:50821913-50821576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 98

               
               
               Conread position:338-640
               
               
               Cow position:chr5:6286304-6286603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:222
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):79, 132

               
               
               Conread position:340-492
               
               
               Cow position:chr5:60189120-60188961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:340-662
               
               
               Cow position:chr5:57575900-57575567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 93

               
               
               Conread position:340-673
               
               
               Cow position:chr5:45804186-45803851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 25

               
               
               Conread position:343-550
               
               
               Cow position:chr5:23357453-23357250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):187, 75

               
               
               Conread position:343-594
               
               
               Cow position:chr5:32672943-32673196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):86, 26

               
               
               Conread position:344-670
               
               
               Cow position:chr5:42744903-42744587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 29

               
               
               Conread position:344-673
               
               
               Cow position:chr5:34441657-34442001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:245
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):74, 258

               
               
               Conread position:344-677
               
               
               Cow position:chr5:41129865-41129551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:232
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):71, 128

               
               
               Conread position:345-669
               
               
               Cow position:chr5:65588821-65588502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 79

               
               
               Conread position:346-673
               
               
               Cow position:chr5:31640546-31640218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 89

               
               
               Conread position:346-675
               
               
               Cow position:chr5:58793486-58793826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 92

               
               
               Conread position:348-659
               
               
               Cow position:chr5:61840309-61839991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):7, 79

               
               
               Conread position:348-673
               
               
               Cow position:chr5:32696704-32697022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 34

               
               
               Conread position:349-669
               
               
               Cow position:chr5:20407560-20407872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:228
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):65, 82

               
               
               Conread position:349-672
               
               
               Cow position:chr5:52644962-52645284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 237

               
               
               Conread position:350-592
               
               
               Cow position:chr5:59717853-59717616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):44, 88

               
               
               Conread position:352-687
               
               
               Cow position:chr5:43737848-43738175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 83

               
               
               Conread position:354-605
               
               
               Cow position:chr5:65883659-65883921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):75, 170

               
               
               Conread position:354-672
               
               
               Cow position:chr5:23753109-23753434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):71, 9

               
               
               Conread position:356-673
               
               
               Cow position:chr5:31481259-31480945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):62, 69

               
               
               Conread position:359-658
               
               
               Cow position:chr5:8162710-8163018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):70, 165

               
               
               Conread position:359-673
               
               
               Cow position:chr5:31918750-31918445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:226
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):65, 45

               
               
               Conread position:363-673
               
               
               Cow position:chr5:4617470-4617164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):65, 44

               
               
               Conread position:367-539
               
               
               Cow position:chr5:34193006-34192827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):52, 16

               
               
               Conread position:367-578
               
               
               Cow position:chr5:19524000-19523779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):63, 155

               
               
               Conread position:367-633
               
               
               Cow position:chr5:69520991-69520721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):52, 135

               
               
               Conread position:367-671
               
               
               Cow position:chr5:33414311-33414615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):50, 27

               
               
               Conread position:367-675
               
               
               Cow position:chr5:21525259-21524953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):62, 52

               
               
               Conread position:367-675
               
               
               Cow position:chr5:65601557-65601249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):46, 57

               
               
               Conread position:368-675
               
               
               Cow position:chr5:45706133-45705836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):69, 99

               
               
               Conread position:368-675
               
               
               Cow position:chr5:68872292-68871981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):62, 19

               
               
               Conread position:369-673
               
               
               Cow position:chr5:16509204-16508886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 163

               
               
               Conread position:373-672
               
               
               Cow position:chr5:50975993-50975677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 58

               
               
               Conread position:382-672
               
               
               Cow position:chr5:47313558-47313265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):55, 72

               
               
               Conread position:384-672
               
               
               Cow position:chr5:46122270-46122559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):35, 74

               
               
               Conread position:390-625
               
               
               Cow position:chr5:21920457-21920206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):28, 51

               
               
               Conread position:390-675
               
               
               Cow position:chr5:28926103-28926396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:216
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):40, 279

               
               
               Conread position:396-607
               
               
               Cow position:chr5:12566670-12566874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):34, 71

               
               
               Conread position:396-673
               
               
               Cow position:chr5:56820190-56820469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 23

               
               
               Conread position:399-663
               
               
               Cow position:chr5:21964357-21964086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):20, 32

               
               
               Conread position:399-674
               
               
               Cow position:chr5:12709953-12709675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 16

               
               
               Conread position:400-663
               
               
               Cow position:chr5:2500112-2500388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):18, 40

               
               
               Conread position:401-674
               
               
               Cow position:chr5:65593938-65593669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):36, 18

               
               
               Conread position:405-658
               
               
               Cow position:chr5:1678454-1678204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):25, 79

               
               
               Conread position:407-673
               
               
               Cow position:chr5:1766291-1766553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):11, 30

               
               
               Conread position:407-673
               
               
               Cow position:chr5:10261177-10261448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):70, 8

               
               
               Conread position:408-634
               
               
               Cow position:chr5:3668957-3668727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):11, 31

               
               
               Conread position:409-663
               
               
               Cow position:chr5:54713673-54713936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):10, 30

               
               
               Conread position:409-673
               
               
               Cow position:chr5:34115708-34115453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):71, 22

               
               
               Conread position:409-676
               
               
               Cow position:chr5:41531027-41531300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):24, 10

               
               
               Conread position:410-673
               
               
               Cow position:chr5:35235656-35235918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):66, 5

               
               
               Conread position:413-597
               
               
               Cow position:chr5:7921353-7921537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):114, 22

               
               
               Conread position:415-671
               
               
               Cow position:chr5:56433857-56433591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):68, 109

               
               
               Conread position:417-605
               
               
               Cow position:chr5:24485387-24485576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):69, 19

               
               
               Conread position:417-608
               
               
               Cow position:chr5:51800925-51801118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):59, 23

               
               
               Conread position:417-633
               
               
               Cow position:chr5:29979935-29980155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):60, 19

               
               
               Conread position:417-672
               
               
               Cow position:chr5:1779238-1779470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:417-675
               
               
               Cow position:chr5:26790408-26790660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):67, 19

               
               
               Conread position:417-675
               
               
               Cow position:chr5:41522751-41523004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):7, 75

               
               
               Conread position:418-675
               
               
               Cow position:chr5:4797277-4797522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):122, 18

               
               
               Conread position:418-675
               
               
               Cow position:chr5:7140060-7140316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):66, 18

               
               
               Conread position:418-675
               
               
               Cow position:chr5:27403183-27403455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):35, 18

               
               
               Conread position:426-674
               
               
               Cow position:chr5:45037052-45036811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:196
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):101, 9

               
               
               Conread position:429-673
               
               
               Cow position:chr5:43474881-43474638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 51

               
               
               Conread position:431-674
               
               
               Cow position:chr5:2288515-2288770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:433-661
               
               
               Cow position:chr5:49559213-49558970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):35, 193

               
               
               Conread position:434-590
               
               
               Cow position:chr5:47721575-47721408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):42, 90

               
               
               Conread position:434-652
               
               
               Cow position:chr5:20345193-20344968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):50, 36

               
               
               Conread position:434-670
               
               
               Cow position:chr5:19470159-19470393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:176
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):50, 36

               
               
               Conread position:434-673
               
               
               Cow position:chr5:49821171-49820933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):68, 37

               
               
               Conread position:436-605
               
               
               Cow position:chr5:71579205-71579028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):45, 85

               
               
               Conread position:436-650
               
               
               Cow position:chr5:17644625-17644842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):43, 176

               
               
               Conread position:436-673
               
               
               Cow position:chr5:16185117-16184880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):32, 171

               
               
               Conread position:436-674
               
               
               Cow position:chr5:42667358-42667599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):45, 74

               
               
               Conread position:439-672
               
               
               Cow position:chr5:54064802-54064571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):66, 31

               
               
               Conread position:440-671
               
               
               Cow position:chr5:30638838-30639060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):107, 141

               
               
               Conread position:440-672
               
               
               Cow position:chr5:72150275-72150043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):41, 84

               
               
               Conread position:441-596
               
               
               Cow position:chr5:36624254-36624097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):44, 18

               
               
               Conread position:441-641
               
               
               Cow position:chr5:53145859-53146064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:449-657
               
               
               Cow position:chr5:74019754-74019964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):32, 73

               
               
               Conread position:455-613
               
               
               Cow position:chr5:19294480-19294640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):7, 29

               
               
               Conread position:460-664
               
               
               Cow position:chr5:55821375-55821166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):78, 23

               
               
               Conread position:483-672
               
               
               Cow position:chr5:57271284-57271473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):44, 38

               
               
               Conread position:483-673
               
               
               Cow position:chr5:63388775-63388585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:485-633
               
               
               Cow position:chr5:61875205-61875347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:485-673
               
               
               Cow position:chr5:60520141-60519957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):42, 35

               
               
               Conread position:515-671
               
               
               Cow position:chr5:39418840-39418990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:162-673
               
               
               Cow position:chr6:34195847-34196343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 21

               
               
               Conread position:162-673
               
               
               Cow position:chr6:41376077-41375557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:538
               
               
               Alignm identity:359
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):171, 21

               
               
               Conread position:220-422
               
               
               Cow position:chr6:60186390-60186605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:221-674
               
               
               Cow position:chr6:4383734-4383296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 92

               
               
               Conread position:224-426
               
               
               Cow position:chr6:39415079-39414878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):91, 32

               
               
               Conread position:225-467
               
               
               Cow position:chr6:19225137-19225362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:229-673
               
               
               Cow position:chr6:53652293-53651846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 106

               
               
               Conread position:230-675
               
               
               Cow position:chr6:65702158-65702598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:298
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):103, 129

               
               
               Conread position:231-387
               
               
               Cow position:chr6:47989676-47989519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):60, 82

               
               
               Conread position:231-664
               
               
               Cow position:chr6:6227259-6226838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:287
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):9, 43

               
               
               Conread position:231-675
               
               
               Cow position:chr6:2896992-2896554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:291
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):9, 195

               
               
               Conread position:233-454
               
               
               Cow position:chr6:41226599-41226804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:233-465
               
               
               Cow position:chr6:30024126-30023899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):10, 40

               
               
               Conread position:233-528
               
               
               Cow position:chr6:9302477-9302764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):240, 12

               
               
               Conread position:233-528
               
               
               Cow position:chr6:56986402-56986695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):83, 13

               
               
               Conread position:233-631
               
               
               Cow position:chr6:4691718-4692137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 26

               
               
               Conread position:233-663
               
               
               Cow position:chr6:34475311-34475735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 19

               
               
               Conread position:233-671
               
               
               Cow position:chr6:32866975-32867399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 13

               
               
               Conread position:234-384
               
               
               Cow position:chr6:11262988-11262843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:234-407
               
               
               Cow position:chr6:8726924-8726751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:234-411
               
               
               Cow position:chr6:63182532-63182358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:234-422
               
               
               Cow position:chr6:57467846-57467654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:234-423
               
               
               Cow position:chr6:8186941-8187131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):94, 18

               
               
               Conread position:234-430
               
               
               Cow position:chr6:21083295-21083493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):180, 15

               
               
               Conread position:234-431
               
               
               Cow position:chr6:19563233-19563437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):92, 18

               
               
               Conread position:234-432
               
               
               Cow position:chr6:35984888-35985087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):94, 19

               
               
               Conread position:234-445
               
               
               Cow position:chr6:3937035-3936818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):9, 201

               
               
               Conread position:234-451
               
               
               Cow position:chr6:51933786-51933582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):176, 52

               
               
               Conread position:234-467
               
               
               Cow position:chr6:1941588-1941820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):158, 13

               
               
               Conread position:234-468
               
               
               Cow position:chr6:37692999-37692762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):14, 38

               
               
               Conread position:234-484
               
               
               Cow position:chr6:1866978-1866727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):42, 89

               
               
               Conread position:234-484
               
               
               Cow position:chr6:57320352-57320589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:234-535
               
               
               Cow position:chr6:16287820-16288109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 42

               
               
               Conread position:234-542
               
               
               Cow position:chr6:23024851-23025177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):92, 120

               
               
               Conread position:234-543
               
               
               Cow position:chr6:50504702-50504386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 15

               
               
               Conread position:234-567
               
               
               Cow position:chr6:17794509-17794849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:251
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):58, 15

               
               
               Conread position:234-579
               
               
               Cow position:chr6:36645620-36645283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:239
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):185, 15

               
               
               Conread position:234-579
               
               
               Cow position:chr6:59719059-59718691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:262
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):14, 219

               
               
               Conread position:234-586
               
               
               Cow position:chr6:10039974-10039609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 104

               
               
               Conread position:234-601
               
               
               Cow position:chr6:50467385-50467008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):94, 242

               
               
               Conread position:234-610
               
               
               Cow position:chr6:19996861-19996484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:259
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):84, 19

               
               
               Conread position:234-610
               
               
               Cow position:chr6:38610220-38609832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:268
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):54, 19

               
               
               Conread position:234-637
               
               
               Cow position:chr6:120485-120080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 40

               
               
               Conread position:234-660
               
               
               Cow position:chr6:47575137-47574723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 15

               
               
               Conread position:234-669
               
               
               Cow position:chr6:60819762-60819326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:305
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):86, 63

               
               
               Conread position:234-671
               
               
               Cow position:chr6:16102943-16103395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 119

               
               
               Conread position:234-673
               
               
               Cow position:chr6:5609196-5609635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 16

               
               
               Conread position:234-673
               
               
               Cow position:chr6:16700501-16700064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 132

               
               
               Conread position:235-397
               
               
               Cow position:chr6:21346907-21347067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:235-412
               
               
               Cow position:chr6:34423214-34423390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:235-422
               
               
               Cow position:chr6:26408256-26408445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):93, 187

               
               
               Conread position:235-441
               
               
               Cow position:chr6:36537118-36537323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):182, 14

               
               
               Conread position:235-474
               
               
               Cow position:chr6:21470185-21470424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):8, 86

               
               
               Conread position:235-477
               
               
               Cow position:chr6:66839439-66839198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):238, 99

               
               
               Conread position:235-528
               
               
               Cow position:chr6:18608565-18608864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):83, 14

               
               
               Conread position:235-532
               
               
               Cow position:chr6:693899-694201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:216
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):132, 92

               
               
               Conread position:235-605
               
               
               Cow position:chr6:28155927-28156277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:261
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):285, 39

               
               
               Conread position:235-630
               
               
               Cow position:chr6:15243507-15243099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 105

               
               
               Conread position:235-673
               
               
               Cow position:chr6:7128159-7128597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 14

               
               
               Conread position:235-673
               
               
               Cow position:chr6:46865339-46865788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:308
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):51, 71

               
               
               Conread position:235-674
               
               
               Cow position:chr6:23696241-23695801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 41

               
               
               Conread position:236-439
               
               
               Cow position:chr6:41657509-41657307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):177, 13

               
               
               Conread position:236-503
               
               
               Cow position:chr6:48097357-48097627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:200
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):7, 38

               
               
               Conread position:236-504
               
               
               Cow position:chr6:63066084-63065798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):15, 215

               
               
               Conread position:236-507
               
               
               Cow position:chr6:67451126-67451402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):7, 27

               
               
               Conread position:236-511
               
               
               Cow position:chr6:60265922-60266215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:202
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):9, 215

               
               
               Conread position:236-539
               
               
               Cow position:chr6:8600250-8599944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):40, 200

               
               
               Conread position:236-540
               
               
               Cow position:chr6:51529945-51530248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):64, 38

               
               
               Conread position:236-630
               
               
               Cow position:chr6:57545984-57546368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 37

               
               
               Conread position:236-671
               
               
               Cow position:chr6:3952765-3952329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 16

               
               
               Conread position:236-671
               
               
               Cow position:chr6:9736400-9736835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:314
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):60, 133

               
               
               Conread position:236-672
               
               
               Cow position:chr6:2547507-2547047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 210

               
               
               Conread position:236-673
               
               
               Cow position:chr6:18080272-18080707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:287
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):90, 16

               
               
               Conread position:236-673
               
               
               Cow position:chr6:24468153-24468586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 84

               
               
               Conread position:236-673
               
               
               Cow position:chr6:32126297-32125872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 83

               
               
               Conread position:236-674
               
               
               Cow position:chr6:45690375-45690790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 13

               
               
               Conread position:237-417
               
               
               Cow position:chr6:15058617-15058440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:237-469
               
               
               Cow position:chr6:57079669-57079433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):70, 15

               
               
               Conread position:237-504
               
               
               Cow position:chr6:41014731-41015003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):79, 16

               
               
               Conread position:237-539
               
               
               Cow position:chr6:18117805-18118113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 92

               
               
               Conread position:237-539
               
               
               Cow position:chr6:37395158-37395469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 78

               
               
               Conread position:237-541
               
               
               Cow position:chr6:12965097-12964792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):81, 12

               
               
               Conread position:237-645
               
               
               Cow position:chr6:11247013-11246597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 114

               
               
               Conread position:237-648
               
               
               Cow position:chr6:15446949-15447378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 203

               
               
               Conread position:237-673
               
               
               Cow position:chr6:51581011-51581453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 47

               
               
               Conread position:237-674
               
               
               Cow position:chr6:17557618-17557178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:287
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):187, 16

               
               
               Conread position:237-676
               
               
               Cow position:chr6:58304656-58304232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:289
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):89, 39

               
               
               Conread position:238-417
               
               
               Cow position:chr6:45159813-45159994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):88, 15

               
               
               Conread position:238-422
               
               
               Cow position:chr6:6614867-6614680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):89, 15

               
               
               Conread position:238-422
               
               
               Cow position:chr6:28561926-28562111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):88, 14

               
               
               Conread position:238-425
               
               
               Cow position:chr6:47151060-47150872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):169, 14

               
               
               Conread position:238-443
               
               
               Cow position:chr6:43906438-43906648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):88, 184

               
               
               Conread position:238-466
               
               
               Cow position:chr6:42483659-42483428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):5, 113

               
               
               Conread position:238-473
               
               
               Cow position:chr6:60850943-60850708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):6, 91

               
               
               Conread position:238-478
               
               
               Cow position:chr6:62683618-62683371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):86, 56

               
               
               Conread position:238-501
               
               
               Cow position:chr6:28559782-28559503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):90, 14

               
               
               Conread position:238-552
               
               
               Cow position:chr6:33510031-33509712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):88, 14

               
               
               Conread position:238-571
               
               
               Cow position:chr6:13565328-13564987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:247
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):76, 15

               
               
               Conread position:238-576
               
               
               Cow position:chr6:1429876-1429537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:247
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):180, 11

               
               
               Conread position:238-582
               
               
               Cow position:chr6:17548725-17549089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:251
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):56, 191

               
               
               Conread position:238-592
               
               
               Cow position:chr6:22850010-22850363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):88, 15

               
               
               Conread position:238-596
               
               
               Cow position:chr6:10225407-10225761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:261
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):88, 180

               
               
               Conread position:238-596
               
               
               Cow position:chr6:35726332-35725973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:253
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):104, 14

               
               
               Conread position:238-596
               
               
               Cow position:chr6:43134699-43135066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:261
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):57, 15

               
               
               Conread position:238-603
               
               
               Cow position:chr6:59798891-59798524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):83, 14

               
               
               Conread position:238-610
               
               
               Cow position:chr6:31847002-31847356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:261
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):180, 14

               
               
               Conread position:238-621
               
               
               Cow position:chr6:17313980-17313587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 14

               
               
               Conread position:238-651
               
               
               Cow position:chr6:12669340-12668934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 14

               
               
               Conread position:238-652
               
               
               Cow position:chr6:44566668-44566238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:277
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):75, 14

               
               
               Conread position:238-662
               
               
               Cow position:chr6:33302638-33302228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:298
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):86, 14

               
               
               Conread position:238-673
               
               
               Cow position:chr6:13687573-13688006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 21

               
               
               Conread position:238-673
               
               
               Cow position:chr6:14949249-14949676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 15

               
               
               Conread position:238-673
               
               
               Cow position:chr6:17414208-17414646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 11

               
               
               Conread position:238-673
               
               
               Cow position:chr6:38441423-38440987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 104

               
               
               Conread position:238-673
               
               
               Cow position:chr6:50090887-50090446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:290
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):57, 14

               
               
               Conread position:238-673
               
               
               Cow position:chr6:52478168-52478622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 197

               
               
               Conread position:238-687
               
               
               Cow position:chr6:34251056-34251488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:304
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):80, 14

               
               
               Conread position:239-412
               
               
               Cow position:chr6:14383918-14383744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):86, 126

               
               
               Conread position:239-417
               
               
               Cow position:chr6:49686062-49685882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):87, 171

               
               
               Conread position:239-426
               
               
               Cow position:chr6:22876686-22876876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:239-427
               
               
               Cow position:chr6:58697387-58697579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:239-452
               
               
               Cow position:chr6:42728888-42728672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):87, 46

               
               
               Conread position:239-463
               
               
               Cow position:chr6:66947578-66947802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):27, 97

               
               
               Conread position:239-466
               
               
               Cow position:chr6:21475967-21475740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):90, 37

               
               
               Conread position:239-467
               
               
               Cow position:chr6:48436072-48435847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):61, 41

               
               
               Conread position:239-469
               
               
               Cow position:chr6:35171856-35171615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):51, 151

               
               
               Conread position:239-473
               
               
               Cow position:chr6:55548292-55548530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):77, 58

               
               
               Conread position:239-474
               
               
               Cow position:chr6:42035012-42034777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):166, 96

               
               
               Conread position:239-521
               
               
               Cow position:chr6:3351270-3350976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):99, 63

               
               
               Conread position:239-521
               
               
               Cow position:chr6:55417291-55417570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):101, 79

               
               
               Conread position:239-552
               
               
               Cow position:chr6:24536284-24536617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:233
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):71, 300

               
               
               Conread position:239-579
               
               
               Cow position:chr6:26043977-26043647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:227
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):100, 66

               
               
               Conread position:239-584
               
               
               Cow position:chr6:59602973-59603317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 68

               
               
               Conread position:239-596
               
               
               Cow position:chr6:16266971-16266597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:242
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):79, 126

               
               
               Conread position:239-605
               
               
               Cow position:chr6:9219504-9219142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 14

               
               
               Conread position:239-606
               
               
               Cow position:chr6:14913992-14914376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:272
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):88, 58

               
               
               Conread position:239-610
               
               
               Cow position:chr6:38640473-38640095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 34

               
               
               Conread position:239-616
               
               
               Cow position:chr6:55209802-55209418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:255
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):99, 124

               
               
               Conread position:239-638
               
               
               Cow position:chr6:60740253-60739855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 75

               
               
               Conread position:239-640
               
               
               Cow position:chr6:60784113-60783708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:265
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):82, 353

               
               
               Conread position:239-651
               
               
               Cow position:chr6:65264309-65264708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):302, 66

               
               
               Conread position:239-663
               
               
               Cow position:chr6:53932603-53933034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 159

               
               
               Conread position:239-671
               
               
               Cow position:chr6:13367524-13367102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 85

               
               
               Conread position:239-671
               
               
               Cow position:chr6:24110526-24110111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:300
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):87, 187

               
               
               Conread position:239-672
               
               
               Cow position:chr6:10176057-10176497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 55

               
               
               Conread position:239-672
               
               
               Cow position:chr6:13040695-13040259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 50

               
               
               Conread position:239-672
               
               
               Cow position:chr6:40032421-40031998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 46

               
               
               Conread position:239-673
               
               
               Cow position:chr6:5095300-5095745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 34

               
               
               Conread position:239-673
               
               
               Cow position:chr6:7539815-7539379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 140

               
               
               Conread position:239-673
               
               
               Cow position:chr6:10399666-10400090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 132

               
               
               Conread position:239-673
               
               
               Cow position:chr6:15300598-15301012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 47

               
               
               Conread position:239-673
               
               
               Cow position:chr6:15937610-15938047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 199

               
               
               Conread position:239-673
               
               
               Cow position:chr6:35181012-35181448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 199

               
               
               Conread position:239-675
               
               
               Cow position:chr6:1769952-1770392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 125

               
               
               Conread position:239-675
               
               
               Cow position:chr6:48282237-48281798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:291
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):79, 119

               
               
               Conread position:239-675
               
               
               Cow position:chr6:67187920-67187494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 34

               
               
               Conread position:239-676
               
               
               Cow position:chr6:1704036-1703615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 28

               
               
               Conread position:239-676
               
               
               Cow position:chr6:4469008-4468550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 98

               
               
               Conread position:239-676
               
               
               Cow position:chr6:43345198-43345658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:308
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):87, 114

               
               
               Conread position:239-677
               
               
               Cow position:chr6:18447272-18447708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 169

               
               
               Conread position:239-687
               
               
               Cow position:chr6:6201675-6201232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:312
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):74, 226

               
               
               Conread position:240-364
               
               
               Cow position:chr6:60674072-60673951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:100
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:240-387
               
               
               Cow position:chr6:66058468-66058614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:240-402
               
               
               Cow position:chr6:21175575-21175416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:240-405
               
               
               Cow position:chr6:34463349-34463512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):18, 80

               
               
               Conread position:240-407
               
               
               Cow position:chr6:7291551-7291389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:240-417
               
               
               Cow position:chr6:53811827-53811646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):80, 98

               
               
               Conread position:240-426
               
               
               Cow position:chr6:36570707-36570515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):70, 180

               
               
               Conread position:240-436
               
               
               Cow position:chr6:30983755-30983561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):84, 45

               
               
               Conread position:240-437
               
               
               Cow position:chr6:35743221-35743023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):67, 181

               
               
               Conread position:240-448
               
               
               Cow position:chr6:23938292-23938091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):178, 76

               
               
               Conread position:240-462
               
               
               Cow position:chr6:66259977-66259747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):77, 13

               
               
               Conread position:240-463
               
               
               Cow position:chr6:13653587-13653369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):26, 151

               
               
               Conread position:240-469
               
               
               Cow position:chr6:1475578-1475355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):175, 51

               
               
               Conread position:240-470
               
               
               Cow position:chr6:43787667-43787904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):55, 92

               
               
               Conread position:240-474
               
               
               Cow position:chr6:6168929-6168693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):8, 126

               
               
               Conread position:240-476
               
               
               Cow position:chr6:5820019-5820244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):173, 51

               
               
               Conread position:240-476
               
               
               Cow position:chr6:53546270-53546038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):178, 46

               
               
               Conread position:240-484
               
               
               Cow position:chr6:12761521-12761276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):88, 40

               
               
               Conread position:240-499
               
               
               Cow position:chr6:21293257-21293518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:193
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):97, 79

               
               
               Conread position:240-503
               
               
               Cow position:chr6:18903796-18904078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):95, 199

               
               
               Conread position:240-506
               
               
               Cow position:chr6:41655814-41656072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):179, 45

               
               
               Conread position:240-506
               
               
               Cow position:chr6:56716049-56715791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):143, 55

               
               
               Conread position:240-511
               
               
               Cow position:chr6:8094046-8094324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):138, 9

               
               
               Conread position:240-515
               
               
               Cow position:chr6:67728619-67728333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):98, 123

               
               
               Conread position:240-522
               
               
               Cow position:chr6:19259117-19259389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):174, 49

               
               
               Conread position:240-522
               
               
               Cow position:chr6:47884804-47885065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):226, 54

               
               
               Conread position:240-529
               
               
               Cow position:chr6:22215221-22215519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:206
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):75, 237

               
               
               Conread position:240-559
               
               
               Cow position:chr6:37332352-37332022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):37, 198

               
               
               Conread position:240-565
               
               
               Cow position:chr6:19045870-19045533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):10, 192

               
               
               Conread position:240-570
               
               
               Cow position:chr6:37463246-37462926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:240
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):175, 51

               
               
               Conread position:240-583
               
               
               Cow position:chr6:54207892-54208248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):113, 13

               
               
               Conread position:240-591
               
               
               Cow position:chr6:11192239-11192583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:250
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):227, 94

               
               
               Conread position:240-594
               
               
               Cow position:chr6:25614849-25615222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:258
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):90, 342

               
               
               Conread position:240-600
               
               
               Cow position:chr6:23401754-23402115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 87

               
               
               Conread position:240-605
               
               
               Cow position:chr6:58370988-58370612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 69

               
               
               Conread position:240-625
               
               
               Cow position:chr6:46282751-46283145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:281
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):61, 207

               
               
               Conread position:240-640
               
               
               Cow position:chr6:26450540-26450155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 25

               
               
               Conread position:240-641
               
               
               Cow position:chr6:24934371-24934793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:266
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):53, 205

               
               
               Conread position:240-655
               
               
               Cow position:chr6:47356067-47355647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 45

               
               
               Conread position:240-662
               
               
               Cow position:chr6:35989997-35990407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 68

               
               
               Conread position:240-662
               
               
               Cow position:chr6:37149423-37149009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 22

               
               
               Conread position:240-671
               
               
               Cow position:chr6:57404895-57405317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:301
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):179, 94

               
               
               Conread position:240-671
               
               
               Cow position:chr6:60057397-60057850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 298

               
               
               Conread position:240-672
               
               
               Cow position:chr6:6060333-6060751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 33

               
               
               Conread position:240-672
               
               
               Cow position:chr6:17090821-17090401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 14

               
               
               Conread position:240-672
               
               
               Cow position:chr6:47520295-47519852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 195

               
               
               Conread position:240-672
               
               
               Cow position:chr6:53138698-53139123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:287
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):51, 13

               
               
               Conread position:240-673
               
               
               Cow position:chr6:7130620-7131066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:313
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):67, 312

               
               
               Conread position:240-673
               
               
               Cow position:chr6:10613070-10612671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):231, 9

               
               
               Conread position:240-673
               
               
               Cow position:chr6:17997076-17997510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 193

               
               
               Conread position:240-673
               
               
               Cow position:chr6:21535280-21534864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 9

               
               
               Conread position:240-673
               
               
               Cow position:chr6:31564111-31564530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:303
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):190, 45

               
               
               Conread position:240-673
               
               
               Cow position:chr6:32122136-32121716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 88

               
               
               Conread position:240-673
               
               
               Cow position:chr6:53024570-53024993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 83

               
               
               Conread position:240-673
               
               
               Cow position:chr6:54490505-54490935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 79

               
               
               Conread position:240-673
               
               
               Cow position:chr6:56850258-56849823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 85

               
               
               Conread position:240-673
               
               
               Cow position:chr6:65871271-65870829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 9

               
               
               Conread position:240-674
               
               
               Cow position:chr6:8966329-8965893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 67

               
               
               Conread position:240-674
               
               
               Cow position:chr6:31535332-31535767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 87

               
               
               Conread position:240-674
               
               
               Cow position:chr6:39358102-39358537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 82

               
               
               Conread position:240-674
               
               
               Cow position:chr6:44078756-44078325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 176

               
               
               Conread position:240-674
               
               
               Cow position:chr6:49421555-49421973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 38

               
               
               Conread position:240-675
               
               
               Cow position:chr6:66434196-66433751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 169

               
               
               Conread position:240-678
               
               
               Cow position:chr6:45596306-45596735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:308
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):179, 9

               
               
               Conread position:240-697
               
               
               Cow position:chr6:7189889-7190337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 25

               
               
               Conread position:241-383
               
               
               Cow position:chr6:59759409-59759268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:241-417
               
               
               Cow position:chr6:44543906-44544085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:241-422
               
               
               Cow position:chr6:21052206-21052392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:241-422
               
               
               Cow position:chr6:24514294-24514488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:241-439
               
               
               Cow position:chr6:36225350-36225146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:241-478
               
               
               Cow position:chr6:1103505-1103740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):183, 26

               
               
               Conread position:241-481
               
               
               Cow position:chr6:8688611-8688851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):176, 12

               
               
               Conread position:241-528
               
               
               Cow position:chr6:16352119-16352396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):68, 8

               
               
               Conread position:241-543
               
               
               Cow position:chr6:60468470-60468172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):173, 9

               
               
               Conread position:241-569
               
               
               Cow position:chr6:143139-143463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 8

               
               
               Conread position:241-577
               
               
               Cow position:chr6:60273771-60274109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):142, 19

               
               
               Conread position:241-590
               
               
               Cow position:chr6:33206969-33206632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):207, 44

               
               
               Conread position:241-605
               
               
               Cow position:chr6:53841264-53841630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 9

               
               
               Conread position:241-667
               
               
               Cow position:chr6:6067473-6067866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:295
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):112, 33

               
               
               Conread position:241-671
               
               
               Cow position:chr6:15305811-15305390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 188

               
               
               Conread position:241-672
               
               
               Cow position:chr6:64432173-64431745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 44

               
               
               Conread position:241-673
               
               
               Cow position:chr6:21456437-21456885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 69

               
               
               Conread position:241-673
               
               
               Cow position:chr6:46859932-46860363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 8

               
               
               Conread position:241-673
               
               
               Cow position:chr6:60143960-60144372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 8

               
               
               Conread position:241-673
               
               
               Cow position:chr6:62325232-62324796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:290
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):66, 114

               
               
               Conread position:242-386
               
               
               Cow position:chr6:23381426-23381574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:242-409
               
               
               Cow position:chr6:19936329-19936499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):84, 111

               
               
               Conread position:242-412
               
               
               Cow position:chr6:53792239-53792400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:242-413
               
               
               Cow position:chr6:4323561-4323397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:242-421
               
               
               Cow position:chr6:32336277-32336091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):84, 8

               
               
               Conread position:242-426
               
               
               Cow position:chr6:16411853-16411666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):5, 112

               
               
               Conread position:242-426
               
               
               Cow position:chr6:36939113-36938921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:242-452
               
               
               Cow position:chr6:50883440-50883651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):171, 10

               
               
               Conread position:242-455
               
               
               Cow position:chr6:16091136-16090927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):162, 68

               
               
               Conread position:242-499
               
               
               Cow position:chr6:26155384-26155130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):176, 14

               
               
               Conread position:242-521
               
               
               Cow position:chr6:62437656-62437371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):86, 184

               
               
               Conread position:242-535
               
               
               Cow position:chr6:581501-581801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):84, 195

               
               
               Conread position:242-536
               
               
               Cow position:chr6:2078577-2078877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 68

               
               
               Conread position:242-539
               
               
               Cow position:chr6:17068416-17068710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):172, 31

               
               
               Conread position:242-550
               
               
               Cow position:chr6:18954853-18955141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):152, 32

               
               
               Conread position:242-556
               
               
               Cow position:chr6:68376076-68376403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):53, 100

               
               
               Conread position:242-603
               
               
               Cow position:chr6:62670110-62669745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 199

               
               
               Conread position:242-666
               
               
               Cow position:chr6:50577754-50577332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):222, 31

               
               
               Conread position:242-667
               
               
               Cow position:chr6:63251682-63252112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 122

               
               
               Conread position:242-672
               
               
               Cow position:chr6:8804303-8804722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 44

               
               
               Conread position:242-672
               
               
               Cow position:chr6:46558293-46557862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:298
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):175, 77

               
               
               Conread position:242-673
               
               
               Cow position:chr6:611782-611366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 67

               
               
               Conread position:242-673
               
               
               Cow position:chr6:15243078-15242639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 95

               
               
               Conread position:242-673
               
               
               Cow position:chr6:21004919-21004461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:242-673
               
               
               Cow position:chr6:28148503-28148056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:242-673
               
               
               Cow position:chr6:53460332-53460767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 79

               
               
               Conread position:242-674
               
               
               Cow position:chr6:32287870-32287424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 44

               
               
               Conread position:242-674
               
               
               Cow position:chr6:55282053-55282486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 23

               
               
               Conread position:243-460
               
               
               Cow position:chr6:50771123-50771340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):85, 22

               
               
               Conread position:243-477
               
               
               Cow position:chr6:58725605-58725372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):170, 91

               
               
               Conread position:243-492
               
               
               Cow position:chr6:42567734-42567477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):83, 111

               
               
               Conread position:243-663
               
               
               Cow position:chr6:8637520-8637090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 60

               
               
               Conread position:245-408
               
               
               Cow position:chr6:4699941-4699780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:245-412
               
               
               Cow position:chr6:154708-154538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:245-430
               
               
               Cow position:chr6:21350795-21350985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):68, 138

               
               
               Conread position:245-539
               
               
               Cow position:chr6:22985626-22985919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:220
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):114, 62

               
               
               Conread position:245-614
               
               
               Cow position:chr6:60118378-60118010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 67

               
               
               Conread position:245-616
               
               
               Cow position:chr6:48803404-48803779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:260
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):57, 73

               
               
               Conread position:245-667
               
               
               Cow position:chr6:65903390-65903806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 83

               
               
               Conread position:245-672
               
               
               Cow position:chr6:35436223-35435810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):166, 67

               
               
               Conread position:245-673
               
               
               Cow position:chr6:38853420-38853853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 188

               
               
               Conread position:245-673
               
               
               Cow position:chr6:66131555-66131113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:307
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):65, 290

               
               
               Conread position:245-674
               
               
               Cow position:chr6:24781315-24781760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 102

               
               
               Conread position:245-686
               
               
               Cow position:chr6:24031599-24031166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):229, 68

               
               
               Conread position:246-417
               
               
               Cow position:chr6:5600630-5600797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):34, 78

               
               
               Conread position:246-459
               
               
               Cow position:chr6:33150059-33150272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):82, 24

               
               
               Conread position:246-468
               
               
               Cow position:chr6:57089439-57089209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:246-471
               
               
               Cow position:chr6:47246017-47245789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):64, 84

               
               
               Conread position:246-477
               
               
               Cow position:chr6:61110017-61109789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):168, 74

               
               
               Conread position:246-488
               
               
               Cow position:chr6:67069580-67069824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):131, 27

               
               
               Conread position:246-506
               
               
               Cow position:chr6:49437566-49437304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):46, 27

               
               
               Conread position:246-592
               
               
               Cow position:chr6:5330649-5330306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:250
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):82, 109

               
               
               Conread position:246-673
               
               
               Cow position:chr6:19402080-19401667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:303
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):96, 73

               
               
               Conread position:246-673
               
               
               Cow position:chr6:44194321-44194740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 27

               
               
               Conread position:249-412
               
               
               Cow position:chr6:32006224-32006386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:249-464
               
               
               Cow position:chr6:12623741-12623530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):165, 63

               
               
               Conread position:249-650
               
               
               Cow position:chr6:19446485-19446091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 168

               
               
               Conread position:249-672
               
               
               Cow position:chr6:49398397-49398810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 60

               
               
               Conread position:249-674
               
               
               Cow position:chr6:12338222-12337788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 37

               
               
               Conread position:249-674
               
               
               Cow position:chr6:38771503-38771099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):278, 58

               
               
               Conread position:250-412
               
               
               Cow position:chr6:58173573-58173418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:250-423
               
               
               Cow position:chr6:38033089-38032914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:250-671
               
               
               Cow position:chr6:6264883-6264450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 72

               
               
               Conread position:250-671
               
               
               Cow position:chr6:32268656-32269063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 164

               
               
               Conread position:250-671
               
               
               Cow position:chr6:46466049-46465635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 59

               
               
               Conread position:250-672
               
               
               Cow position:chr6:29485314-29484897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 182

               
               
               Conread position:250-673
               
               
               Cow position:chr6:10105752-10106191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 23

               
               
               Conread position:250-673
               
               
               Cow position:chr6:21231743-21231341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 86

               
               
               Conread position:250-673
               
               
               Cow position:chr6:67951188-67950764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 21

               
               
               Conread position:251-473
               
               
               Cow position:chr6:48379381-48379609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):75, 176

               
               
               Conread position:251-539
               
               
               Cow position:chr6:44867316-44867601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):173, 35

               
               
               Conread position:251-649
               
               
               Cow position:chr6:39093975-39093573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:299
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):70, 35

               
               
               Conread position:251-674
               
               
               Cow position:chr6:18988421-18988020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):249, 34

               
               
               Conread position:252-528
               
               
               Cow position:chr6:8161456-8161741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):74, 102

               
               
               Conread position:252-578
               
               
               Cow position:chr6:7119401-7119714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 33

               
               
               Conread position:252-605
               
               
               Cow position:chr6:48010295-48010652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):73, 102

               
               
               Conread position:252-633
               
               
               Cow position:chr6:19754849-19755232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:255
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):55, 102

               
               
               Conread position:253-382
               
               
               Cow position:chr6:30688281-30688413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:253-491
               
               
               Cow position:chr6:27219394-27219165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):228, 75

               
               
               Conread position:253-586
               
               
               Cow position:chr6:46173030-46173370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:228
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):75, 61

               
               
               Conread position:254-404
               
               
               Cow position:chr6:2758009-2757861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:254-417
               
               
               Cow position:chr6:47022786-47022624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):89, 70

               
               
               Conread position:254-423
               
               
               Cow position:chr6:34380589-34380756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):52, 66

               
               
               Conread position:254-550
               
               
               Cow position:chr6:60517065-60516757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):62, 93

               
               
               Conread position:254-595
               
               
               Cow position:chr6:16262008-16261665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:240
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):81, 104

               
               
               Conread position:254-685
               
               
               Cow position:chr6:41733862-41733419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:302
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):71, 190

               
               
               Conread position:257-385
               
               
               Cow position:chr6:78910-79035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:257-422
               
               
               Cow position:chr6:53711627-53711460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:257-431
               
               
               Cow position:chr6:40682444-40682616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):148, 70

               
               
               Conread position:257-465
               
               
               Cow position:chr6:65534944-65535157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:257-478
               
               
               Cow position:chr6:61681302-61681078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):74, 179

               
               
               Conread position:257-526
               
               
               Cow position:chr6:2585165-2584894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:199
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):161, 76

               
               
               Conread position:257-528
               
               
               Cow position:chr6:68816394-68816117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):57, 9

               
               
               Conread position:257-670
               
               
               Cow position:chr6:54365105-54365518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 106

               
               
               Conread position:257-673
               
               
               Cow position:chr6:5113823-5114241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 162

               
               
               Conread position:257-673
               
               
               Cow position:chr6:47305566-47305144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 93

               
               
               Conread position:257-675
               
               
               Cow position:chr6:12091762-12092181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 272

               
               
               Conread position:257-675
               
               
               Cow position:chr6:51835622-51835203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 47

               
               
               Conread position:257-680
               
               
               Cow position:chr6:63720416-63719997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 61

               
               
               Conread position:258-430
               
               
               Cow position:chr6:410997-411166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):156, 61

               
               
               Conread position:258-501
               
               
               Cow position:chr6:33450754-33450992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):232, 75

               
               
               Conread position:258-513
               
               
               Cow position:chr6:34119140-34119390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):151, 52

               
               
               Conread position:258-586
               
               
               Cow position:chr6:61523981-61524310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):71, 178

               
               
               Conread position:258-674
               
               
               Cow position:chr6:19696032-19695610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 177

               
               
               Conread position:259-383
               
               
               Cow position:chr6:68602464-68602341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:259-472
               
               
               Cow position:chr6:1870975-1871191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):67, 177

               
               
               Conread position:259-472
               
               
               Cow position:chr6:57287449-57287654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):165, 26

               
               
               Conread position:260-673
               
               
               Cow position:chr6:28483238-28482820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 166

               
               
               Conread position:261-486
               
               
               Cow position:chr6:1002042-1002274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):35, 25

               
               
               Conread position:261-539
               
               
               Cow position:chr6:9718697-9718981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):154, 45

               
               
               Conread position:261-602
               
               
               Cow position:chr6:62929718-62929368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):77, 102

               
               
               Conread position:261-673
               
               
               Cow position:chr6:9008406-9008806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 46

               
               
               Conread position:262-610
               
               
               Cow position:chr6:54035921-54036271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):40, 22

               
               
               Conread position:262-673
               
               
               Cow position:chr6:52413081-52412659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 101

               
               
               Conread position:262-675
               
               
               Cow position:chr6:35842879-35842460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 75

               
               
               Conread position:264-395
               
               
               Cow position:chr6:53235436-53235567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:100
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:265-506
               
               
               Cow position:chr6:36920759-36921003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):52, 85

               
               
               Conread position:265-604
               
               
               Cow position:chr6:8125545-8125197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:244
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):61, 265

               
               
               Conread position:265-673
               
               
               Cow position:chr6:38641710-38641303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 133

               
               
               Conread position:268-673
               
               
               Cow position:chr6:26915541-26915135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:274
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):205, 164

               
               
               Conread position:270-528
               
               
               Cow position:chr6:67643478-67643740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):51, 255

               
               
               Conread position:271-670
               
               
               Cow position:chr6:20097747-20098156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 166

               
               
               Conread position:272-634
               
               
               Cow position:chr6:50984434-50984068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 82

               
               
               Conread position:272-674
               
               
               Cow position:chr6:18048819-18049222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:284
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):6, 42

               
               
               Conread position:275-465
               
               
               Cow position:chr6:31865301-31865112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):56, 141

               
               
               Conread position:275-527
               
               
               Cow position:chr6:31078662-31078920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):51, 76

               
               
               Conread position:276-625
               
               
               Cow position:chr6:17816786-17817132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):50, 201

               
               
               Conread position:276-658
               
               
               Cow position:chr6:37783604-37783234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:268
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):26, 46

               
               
               Conread position:277-592
               
               
               Cow position:chr6:21590907-21590575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:237
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):146, 7

               
               
               Conread position:278-520
               
               
               Cow position:chr6:7801192-7801436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):40, 58

               
               
               Conread position:278-590
               
               
               Cow position:chr6:21514403-21514735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:238
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):22, 7

               
               
               Conread position:279-625
               
               
               Cow position:chr6:57571680-57571326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 54

               
               
               Conread position:279-633
               
               
               Cow position:chr6:67323508-67323161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:245
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):136, 45

               
               
               Conread position:286-466
               
               
               Cow position:chr6:61576009-61575838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:292-543
               
               
               Cow position:chr6:68652163-68652416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):123, 52

               
               
               Conread position:298-645
               
               
               Cow position:chr6:51969254-51968892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:257
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):124, 29

               
               
               Conread position:298-674
               
               
               Cow position:chr6:54864478-54864863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:282
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):48, 35

               
               
               Conread position:302-673
               
               
               Cow position:chr6:48572698-48573078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:254
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):13, 58

               
               
               Conread position:303-630
               
               
               Cow position:chr6:48112374-48112052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 131

               
               
               Conread position:306-674
               
               
               Cow position:chr6:67214926-67214545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 131

               
               
               Conread position:307-539
               
               
               Cow position:chr6:29248653-29248430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):9, 108

               
               
               Conread position:307-664
               
               
               Cow position:chr6:30974209-30973854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 37

               
               
               Conread position:308-551
               
               
               Cow position:chr6:48469170-48468927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):110, 27

               
               
               Conread position:308-657
               
               
               Cow position:chr6:52901409-52901062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:247
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):116, 5

               
               
               Conread position:308-673
               
               
               Cow position:chr6:63298860-63299218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:253
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):112, 19

               
               
               Conread position:309-575
               
               
               Cow position:chr6:3592566-3592300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):135, 15

               
               
               Conread position:310-425
               
               
               Cow position:chr6:47676182-47676069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:94
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:310-522
               
               
               Cow position:chr6:2153429-2153642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):109, 24

               
               
               Conread position:310-522
               
               
               Cow position:chr6:55535582-55535793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):109, 23

               
               
               Conread position:310-552
               
               
               Cow position:chr6:36284415-36284169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):19, 48

               
               
               Conread position:310-553
               
               
               Cow position:chr6:23465863-23466108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):108, 86

               
               
               Conread position:310-602
               
               
               Cow position:chr6:61168927-61168647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:210
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):20, 126

               
               
               Conread position:310-630
               
               
               Cow position:chr6:58590444-58590122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):108, 217

               
               
               Conread position:310-673
               
               
               Cow position:chr6:54867687-54867316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 23

               
               
               Conread position:311-430
               
               
               Cow position:chr6:28900495-28900374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):106, 22

               
               
               Conread position:311-457
               
               
               Cow position:chr6:21066714-21066862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):104, 22

               
               
               Conread position:311-557
               
               
               Cow position:chr6:32809450-32809198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):104, 22

               
               
               Conread position:311-590
               
               
               Cow position:chr6:58597335-58597620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:215
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):30, 128

               
               
               Conread position:311-610
               
               
               Cow position:chr6:21235212-21234908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:222
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):113, 22

               
               
               Conread position:311-673
               
               
               Cow position:chr6:6401119-6400753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 22

               
               
               Conread position:312-673
               
               
               Cow position:chr6:51463464-51463811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:262
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):8, 56

               
               
               Conread position:313-550
               
               
               Cow position:chr6:2623941-2623711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):102, 83

               
               
               Conread position:313-608
               
               
               Cow position:chr6:582106-582406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:220
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):106, 20

               
               
               Conread position:313-670
               
               
               Cow position:chr6:66531657-66531997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:254
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):106, 19

               
               
               Conread position:313-673
               
               
               Cow position:chr6:37199371-37199740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 20

               
               
               Conread position:313-675
               
               
               Cow position:chr6:9750889-9751238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:256
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):11, 21

               
               
               Conread position:314-468
               
               
               Cow position:chr6:61569796-61569643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):11, 21

               
               
               Conread position:314-476
               
               
               Cow position:chr6:7568289-7568126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):105, 22

               
               
               Conread position:314-666
               
               
               Cow position:chr6:47799459-47799110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 19

               
               
               Conread position:314-673
               
               
               Cow position:chr6:51675074-51674723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 39

               
               
               Conread position:314-674
               
               
               Cow position:chr6:528117-528473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 124

               
               
               Conread position:314-690
               
               
               Cow position:chr6:46571272-46570907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 120

               
               
               Conread position:315-624
               
               
               Cow position:chr6:16316481-16316160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):31, 22

               
               
               Conread position:315-691
               
               
               Cow position:chr6:47339191-47339563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 18

               
               
               Conread position:317-475
               
               
               Cow position:chr6:67805852-67806010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):116, 16

               
               
               Conread position:317-570
               
               
               Cow position:chr6:66375169-66375426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:194
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):101, 114

               
               
               Conread position:317-674
               
               
               Cow position:chr6:49002576-49002921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:255
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):7, 30

               
               
               Conread position:318-604
               
               
               Cow position:chr6:60667573-60667291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):100, 55

               
               
               Conread position:318-673
               
               
               Cow position:chr6:28976878-28977224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 9

               
               
               Conread position:319-673
               
               
               Cow position:chr6:42565849-42565491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 30

               
               
               Conread position:319-674
               
               
               Cow position:chr6:68049578-68049239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:252
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):165, 8

               
               
               Conread position:320-670
               
               
               Cow position:chr6:9452610-9452965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 16

               
               
               Conread position:321-601
               
               
               Cow position:chr6:54573419-54573116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:218
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):102, 98

               
               
               Conread position:321-673
               
               
               Cow position:chr6:6343588-6343231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 11

               
               
               Conread position:321-673
               
               
               Cow position:chr6:21869490-21869840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 12

               
               
               Conread position:321-673
               
               
               Cow position:chr6:36470401-36470758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 115

               
               
               Conread position:323-596
               
               
               Cow position:chr6:50976207-50975936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):13, 113

               
               
               Conread position:323-673
               
               
               Cow position:chr6:8209448-8209784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):91, 48

               
               
               Conread position:323-687
               
               
               Cow position:chr6:11169860-11169495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 118

               
               
               Conread position:324-539
               
               
               Cow position:chr6:28178798-28179007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):203, 80

               
               
               Conread position:324-673
               
               
               Cow position:chr6:66874506-66874167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 33

               
               
               Conread position:325-508
               
               
               Cow position:chr6:68685709-68685524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):93, 109

               
               
               Conread position:325-671
               
               
               Cow position:chr6:38218821-38218479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 9

               
               
               Conread position:327-600
               
               
               Cow position:chr6:45064863-45065140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):92, 111

               
               
               Conread position:328-647
               
               
               Cow position:chr6:19013216-19012900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):152, 63

               
               
               Conread position:328-671
               
               
               Cow position:chr6:63047745-63047383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:258
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):91, 110

               
               
               Conread position:330-579
               
               
               Cow position:chr6:6673258-6672997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):22, 94

               
               
               Conread position:331-576
               
               
               Cow position:chr6:20196153-20196395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):199, 82

               
               
               Conread position:331-667
               
               
               Cow position:chr6:8787887-8788226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 192

               
               
               Conread position:334-671
               
               
               Cow position:chr6:4864400-4864733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 190

               
               
               Conread position:337-464
               
               
               Cow position:chr6:43651896-43651767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):77, 98

               
               
               Conread position:337-511
               
               
               Cow position:chr6:32853331-32853153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):73, 97

               
               
               Conread position:337-534
               
               
               Cow position:chr6:17527445-17527644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):76, 97

               
               
               Conread position:337-669
               
               
               Cow position:chr6:35613273-35613605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 193

               
               
               Conread position:337-671
               
               
               Cow position:chr6:51893357-51893698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):87, 19

               
               
               Conread position:337-673
               
               
               Cow position:chr6:14958196-14958544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 99

               
               
               Conread position:337-673
               
               
               Cow position:chr6:31526190-31525853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 82

               
               
               Conread position:337-673
               
               
               Cow position:chr6:60350148-60350494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 93

               
               
               Conread position:340-542
               
               
               Cow position:chr6:61142421-61142628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):79, 134

               
               
               Conread position:344-673
               
               
               Cow position:chr6:33917702-33918046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:240
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):80, 190

               
               
               Conread position:344-673
               
               
               Cow position:chr6:38614949-38614629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 63

               
               
               Conread position:345-674
               
               
               Cow position:chr6:56843290-56842963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:241
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):106, 83

               
               
               Conread position:353-637
               
               
               Cow position:chr6:55763981-55763695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):66, 88

               
               
               Conread position:354-630
               
               
               Cow position:chr6:61608639-61608355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 81

               
               
               Conread position:354-662
               
               
               Cow position:chr6:25008845-25008530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:239
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):52, 13

               
               
               Conread position:354-673
               
               
               Cow position:chr6:23247839-23248158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 60

               
               
               Conread position:354-674
               
               
               Cow position:chr6:31635557-31635883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):36, 53

               
               
               Conread position:354-674
               
               
               Cow position:chr6:54368777-54369096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:236
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):65, 85

               
               
               Conread position:354-675
               
               
               Cow position:chr6:899166-899481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:239
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):63, 84

               
               
               Conread position:355-519
               
               
               Cow position:chr6:47306022-47306179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:356-640
               
               
               Cow position:chr6:12542805-12543095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 82

               
               
               Conread position:356-673
               
               
               Cow position:chr6:10695985-10695674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 26

               
               
               Conread position:356-674
               
               
               Cow position:chr6:28318522-28318213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 60

               
               
               Conread position:358-670
               
               
               Cow position:chr6:57164552-57164234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):60, 67

               
               
               Conread position:359-672
               
               
               Cow position:chr6:60673687-60673352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):122, 76

               
               
               Conread position:367-659
               
               
               Cow position:chr6:32517766-32518054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):62, 101

               
               
               Conread position:367-670
               
               
               Cow position:chr6:54600462-54600174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:208
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):46, 158

               
               
               Conread position:367-675
               
               
               Cow position:chr6:61113881-61113553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):70, 92

               
               
               Conread position:368-601
               
               
               Cow position:chr6:31814636-31814864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):48, 56

               
               
               Conread position:368-610
               
               
               Cow position:chr6:3081003-3081266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:368-646
               
               
               Cow position:chr6:31854467-31854184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):27, 116

               
               
               Conread position:368-674
               
               
               Cow position:chr6:54140910-54140617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 149

               
               
               Conread position:368-675
               
               
               Cow position:chr6:35471397-35471723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):62, 26

               
               
               Conread position:381-674
               
               
               Cow position:chr6:46292248-46292534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):34, 43

               
               
               Conread position:382-556
               
               
               Cow position:chr6:54364893-54365085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):48, 151

               
               
               Conread position:383-695
               
               
               Cow position:chr6:62924898-62925210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 87

               
               
               Conread position:384-640
               
               
               Cow position:chr6:59109042-59108780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):35, 54

               
               
               Conread position:385-669
               
               
               Cow position:chr6:1944809-1944535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:208
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):33, 44

               
               
               Conread position:390-672
               
               
               Cow position:chr6:24962236-24961951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 50

               
               
               Conread position:390-672
               
               
               Cow position:chr6:52248041-52248329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 49

               
               
               Conread position:390-674
               
               
               Cow position:chr6:44099177-44098888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:219
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):20, 47

               
               
               Conread position:390-675
               
               
               Cow position:chr6:58732220-58732511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):64, 20

               
               
               Conread position:399-671
               
               
               Cow position:chr6:48425246-48425514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):86, 16

               
               
               Conread position:400-594
               
               
               Cow position:chr6:44127692-44127486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):30, 127

               
               
               Conread position:401-669
               
               
               Cow position:chr6:3978584-3978858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):36, 20

               
               
               Conread position:401-673
               
               
               Cow position:chr6:3545771-3545509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):76, 14

               
               
               Conread position:401-673
               
               
               Cow position:chr6:21542403-21542125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):18, 37

               
               
               Conread position:402-675
               
               
               Cow position:chr6:416187-415895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:407-672
               
               
               Cow position:chr6:28148905-28148649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):78, 8

               
               
               Conread position:407-673
               
               
               Cow position:chr6:7824836-7824566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):62, 8

               
               
               Conread position:409-644
               
               
               Cow position:chr6:5445693-5445457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):9, 28

               
               
               Conread position:410-677
               
               
               Cow position:chr6:34076096-34075820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):74, 5

               
               
               Conread position:412-600
               
               
               Cow position:chr6:57299083-57298890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):18, 12

               
               
               Conread position:412-674
               
               
               Cow position:chr6:61137441-61137168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:205
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):69, 23

               
               
               Conread position:415-640
               
               
               Cow position:chr6:44984393-44984164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:176
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):69, 21

               
               
               Conread position:415-691
               
               
               Cow position:chr6:642505-642791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:215
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):54, 9

               
               
               Conread position:417-600
               
               
               Cow position:chr6:38234020-38233834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):67, 19

               
               
               Conread position:417-671
               
               
               Cow position:chr6:60239334-60239585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):110, 19

               
               
               Conread position:417-673
               
               
               Cow position:chr6:5673310-5673034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:417-673
               
               
               Cow position:chr6:16411252-16411000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):69, 11

               
               
               Conread position:417-673
               
               
               Cow position:chr6:54294163-54293916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):110, 18

               
               
               Conread position:417-674
               
               
               Cow position:chr6:47989233-47988991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:418-671
               
               
               Cow position:chr6:6460602-6460346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 17

               
               
               Conread position:420-605
               
               
               Cow position:chr6:19351097-19351285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):15, 8

               
               
               Conread position:425-671
               
               
               Cow position:chr6:25773332-25773574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):55, 10

               
               
               Conread position:429-674
               
               
               Cow position:chr6:16738068-16737824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):108, 7

               
               
               Conread position:432-673
               
               
               Cow position:chr6:20230779-20231020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):51, 33

               
               
               Conread position:434-652
               
               
               Cow position:chr6:49604721-49604509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):50, 16

               
               
               Conread position:434-673
               
               
               Cow position:chr6:48344378-48344133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:184
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):21, 37

               
               
               Conread position:434-673
               
               
               Cow position:chr6:58173230-58172990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):27, 89

               
               
               Conread position:434-673
               
               
               Cow position:chr6:60456874-60456635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):39, 100

               
               
               Conread position:434-674
               
               
               Cow position:chr6:12630066-12629828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):102, 46

               
               
               Conread position:436-669
               
               
               Cow position:chr6:5957985-5958212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):33, 45

               
               
               Conread position:436-673
               
               
               Cow position:chr6:24515155-24515388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):31, 48

               
               
               Conread position:436-674
               
               
               Cow position:chr6:5462015-5462245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):48, 81

               
               
               Conread position:439-657
               
               
               Cow position:chr6:18968740-18968952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):46, 82

               
               
               Conread position:439-675
               
               
               Cow position:chr6:47540572-47540329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 83

               
               
               Conread position:440-615
               
               
               Cow position:chr6:357847-358031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):41, 30

               
               
               Conread position:440-672
               
               
               Cow position:chr6:36928700-36928457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):26, 87

               
               
               Conread position:441-645
               
               
               Cow position:chr6:58363970-58364179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):44, 83

               
               
               Conread position:455-673
               
               
               Cow position:chr6:30786135-30786343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):84, 26

               
               
               Conread position:458-675
               
               
               Cow position:chr6:58439982-58439771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):15, 66

               
               
               Conread position:475-673
               
               
               Cow position:chr6:39994456-39994656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:157
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):9, 46

               
               
               Conread position:483-673
               
               
               Cow position:chr6:2013014-2012824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):56, 108

               
               
               Conread position:483-675
               
               
               Cow position:chr6:33277038-33276842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):44, 37

               
               
               Conread position:485-672
               
               
               Cow position:chr6:15923006-15923193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):61, 106

               
               
               Conread position:162-364
               
               
               Cow position:chr7:5624215-5624011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):36, 19

               
               
               Conread position:162-422
               
               
               Cow position:chr7:27290166-27290439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):67, 24

               
               
               Conread position:205-422
               
               
               Cow position:chr7:21573844-21573631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):11, 20

               
               
               Conread position:205-588
               
               
               Cow position:chr7:32807727-32807355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:262
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):33, 130

               
               
               Conread position:225-478
               
               
               Cow position:chr7:43085136-43084880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):11, 171

               
               
               Conread position:227-569
               
               
               Cow position:chr7:20411267-20411620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:240
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):99, 47

               
               
               Conread position:228-674
               
               
               Cow position:chr7:43109282-43109725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 167

               
               
               Conread position:231-667
               
               
               Cow position:chr7:25859950-25860375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 181

               
               
               Conread position:231-674
               
               
               Cow position:chr7:58301687-58302138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 103

               
               
               Conread position:233-407
               
               
               Cow position:chr7:10438577-10438404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:234-393
               
               
               Cow position:chr7:40710505-40710348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:234-401
               
               
               Cow position:chr7:10441720-10441886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:234-401
               
               
               Cow position:chr7:23609629-23609459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):90, 18

               
               
               Conread position:234-406
               
               
               Cow position:chr7:41122021-41122190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:234-411
               
               
               Cow position:chr7:38357399-38357568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):9, 85

               
               
               Conread position:234-422
               
               
               Cow position:chr7:10945595-10945407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):66, 15

               
               
               Conread position:234-426
               
               
               Cow position:chr7:40310809-40311007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:234-427
               
               
               Cow position:chr7:5906883-5906690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):92, 24

               
               
               Conread position:234-430
               
               
               Cow position:chr7:23672003-23671802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:158
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:234-452
               
               
               Cow position:chr7:62497805-62498020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):153, 15

               
               
               Conread position:234-463
               
               
               Cow position:chr7:35779985-35779760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):180, 18

               
               
               Conread position:234-469
               
               
               Cow position:chr7:6043888-6044125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:177
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):180, 100

               
               
               Conread position:234-471
               
               
               Cow position:chr7:37651748-37651502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):79, 15

               
               
               Conread position:234-472
               
               
               Cow position:chr7:12488674-12488442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:188
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):9, 72

               
               
               Conread position:234-476
               
               
               Cow position:chr7:10414892-10415129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):179, 15

               
               
               Conread position:234-476
               
               
               Cow position:chr7:11796653-11796897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:185
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):9, 100

               
               
               Conread position:234-483
               
               
               Cow position:chr7:57506536-57506785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):11, 62

               
               
               Conread position:234-526
               
               
               Cow position:chr7:13067408-13067115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):95, 18

               
               
               Conread position:234-527
               
               
               Cow position:chr7:38360987-38361277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):92, 18

               
               
               Conread position:234-539
               
               
               Cow position:chr7:10885146-10884833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:210
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:234-565
               
               
               Cow position:chr7:37435494-37435156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):92, 15

               
               
               Conread position:234-587
               
               
               Cow position:chr7:32946314-32945963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 15

               
               
               Conread position:234-604
               
               
               Cow position:chr7:37777568-37777953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:257
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):154, 106

               
               
               Conread position:234-609
               
               
               Cow position:chr7:23762216-23761823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:271
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):179, 59

               
               
               Conread position:234-622
               
               
               Cow position:chr7:43940737-43940364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:267
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):89, 134

               
               
               Conread position:234-640
               
               
               Cow position:chr7:53763343-53763745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 19

               
               
               Conread position:234-641
               
               
               Cow position:chr7:31504097-31503689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:275
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):97, 19

               
               
               Conread position:234-652
               
               
               Cow position:chr7:39145493-39145924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:280
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):101, 124

               
               
               Conread position:234-671
               
               
               Cow position:chr7:30276986-30276542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 15

               
               
               Conread position:234-671
               
               
               Cow position:chr7:35286396-35286822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 56

               
               
               Conread position:234-673
               
               
               Cow position:chr7:10448568-10448976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 27

               
               
               Conread position:234-673
               
               
               Cow position:chr7:25195798-25195341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 18

               
               
               Conread position:234-673
               
               
               Cow position:chr7:25415646-25415203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 118

               
               
               Conread position:234-673
               
               
               Cow position:chr7:34554495-34554069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):246, 42

               
               
               Conread position:234-673
               
               
               Cow position:chr7:48721655-48722098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 97

               
               
               Conread position:234-674
               
               
               Cow position:chr7:47698268-47697830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 53

               
               
               Conread position:235-413
               
               
               Cow position:chr7:14796134-14796324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):82, 18

               
               
               Conread position:235-512
               
               
               Cow position:chr7:8089410-8089129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 84

               
               
               Conread position:235-521
               
               
               Cow position:chr7:26263405-26263700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 39

               
               
               Conread position:235-667
               
               
               Cow position:chr7:51910359-51909946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 14

               
               
               Conread position:235-671
               
               
               Cow position:chr7:21008675-21009155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:340
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):85, 12

               
               
               Conread position:235-672
               
               
               Cow position:chr7:28563150-28563574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 27

               
               
               Conread position:235-672
               
               
               Cow position:chr7:36996606-36996186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 93

               
               
               Conread position:235-673
               
               
               Cow position:chr7:36665577-36665138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 25

               
               
               Conread position:236-417
               
               
               Cow position:chr7:11511965-11511790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):90, 13

               
               
               Conread position:236-422
               
               
               Cow position:chr7:52591753-52591938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):90, 156

               
               
               Conread position:236-424
               
               
               Cow position:chr7:12484548-12484358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):92, 17

               
               
               Conread position:236-425
               
               
               Cow position:chr7:206660-206483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:236-428
               
               
               Cow position:chr7:6802027-6801832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):12, 168

               
               
               Conread position:236-442
               
               
               Cow position:chr7:11784798-11785005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):182, 92

               
               
               Conread position:236-463
               
               
               Cow position:chr7:11994934-11995167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):71, 16

               
               
               Conread position:236-466
               
               
               Cow position:chr7:35088907-35088672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:178
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):92, 202

               
               
               Conread position:236-472
               
               
               Cow position:chr7:39800498-39800748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):59, 11

               
               
               Conread position:236-539
               
               
               Cow position:chr7:40308269-40308574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 180

               
               
               Conread position:236-588
               
               
               Cow position:chr7:53579142-53579504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:249
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):65, 16

               
               
               Conread position:236-613
               
               
               Cow position:chr7:55085913-55085519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:269
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):31, 131

               
               
               Conread position:236-669
               
               
               Cow position:chr7:28917348-28916894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 108

               
               
               Conread position:236-687
               
               
               Cow position:chr7:25722425-25722875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 37

               
               
               Conread position:237-360
               
               
               Cow position:chr7:34098847-34098724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):110, 97

               
               
               Conread position:237-394
               
               
               Cow position:chr7:30290699-30290856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):91, 9

               
               
               Conread position:237-422
               
               
               Cow position:chr7:10559737-10559922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):181, 91

               
               
               Conread position:237-430
               
               
               Cow position:chr7:47523457-47523271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:237-441
               
               
               Cow position:chr7:39514480-39514273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):81, 16

               
               
               Conread position:237-441
               
               
               Cow position:chr7:39516270-39516477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):81, 16

               
               
               Conread position:237-475
               
               
               Cow position:chr7:23491870-23491639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):181, 15

               
               
               Conread position:237-536
               
               
               Cow position:chr7:10599447-10599734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):157, 12

               
               
               Conread position:237-602
               
               
               Cow position:chr7:33698199-33697832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 90

               
               
               Conread position:237-640
               
               
               Cow position:chr7:39099769-39100176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:279
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):77, 290

               
               
               Conread position:237-652
               
               
               Cow position:chr7:54013626-54013185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 134

               
               
               Conread position:237-655
               
               
               Cow position:chr7:43185034-43184620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:295
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):84, 185

               
               
               Conread position:237-673
               
               
               Cow position:chr7:1720720-1721161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:305
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):81, 15

               
               
               Conread position:237-673
               
               
               Cow position:chr7:4452849-4452407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 12

               
               
               Conread position:237-673
               
               
               Cow position:chr7:39148048-39147604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:297
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):84, 15

               
               
               Conread position:237-673
               
               
               Cow position:chr7:39150198-39149744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 12

               
               
               Conread position:237-673
               
               
               Cow position:chr7:40894770-40894328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:318
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):16, 40

               
               
               Conread position:237-673
               
               
               Cow position:chr7:63749234-63749672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 38

               
               
               Conread position:237-674
               
               
               Cow position:chr7:31694385-31694815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 202

               
               
               Conread position:237-675
               
               
               Cow position:chr7:33279741-33280184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 132

               
               
               Conread position:237-675
               
               
               Cow position:chr7:39093678-39094109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 13

               
               
               Conread position:237-687
               
               
               Cow position:chr7:15548275-15547846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 12

               
               
               Conread position:238-387
               
               
               Cow position:chr7:53000279-53000131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):10, 90

               
               
               Conread position:238-392
               
               
               Cow position:chr7:19330409-19330562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):90, 9

               
               
               Conread position:238-408
               
               
               Cow position:chr7:18016914-18016749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:238-410
               
               
               Cow position:chr7:65695063-65695234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:238-413
               
               
               Cow position:chr7:31885839-31885663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):78, 14

               
               
               Conread position:238-422
               
               
               Cow position:chr7:8523537-8523720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):178, 11

               
               
               Conread position:238-422
               
               
               Cow position:chr7:42943549-42943370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:238-427
               
               
               Cow position:chr7:39621419-39621221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):88, 16

               
               
               Conread position:238-465
               
               
               Cow position:chr7:8289601-8289378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:238-468
               
               
               Cow position:chr7:23678173-23677939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):88, 204

               
               
               Conread position:238-469
               
               
               Cow position:chr7:8387167-8387402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):80, 42

               
               
               Conread position:238-473
               
               
               Cow position:chr7:26791757-26791515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):38, 9

               
               
               Conread position:238-516
               
               
               Cow position:chr7:29505357-29505077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 72

               
               
               Conread position:238-519
               
               
               Cow position:chr7:10081462-10081740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):88, 15

               
               
               Conread position:238-599
               
               
               Cow position:chr7:11444233-11443873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):83, 14

               
               
               Conread position:238-600
               
               
               Cow position:chr7:23636956-23636584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 32

               
               
               Conread position:238-604
               
               
               Cow position:chr7:10368937-10369307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):72, 14

               
               
               Conread position:238-629
               
               
               Cow position:chr7:14482311-14481908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:270
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):86, 23

               
               
               Conread position:238-641
               
               
               Cow position:chr7:8878129-8877718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:273
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):69, 126

               
               
               Conread position:238-657
               
               
               Cow position:chr7:39164637-39164211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:288
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):88, 14

               
               
               Conread position:238-665
               
               
               Cow position:chr7:39160426-39159992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:306
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):69, 9

               
               
               Conread position:238-670
               
               
               Cow position:chr7:46856723-46857150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 35

               
               
               Conread position:238-671
               
               
               Cow position:chr7:31170714-31171143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 71

               
               
               Conread position:238-671
               
               
               Cow position:chr7:39144931-39144499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:303
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):80, 11

               
               
               Conread position:238-673
               
               
               Cow position:chr7:14076042-14076463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 71

               
               
               Conread position:238-673
               
               
               Cow position:chr7:14450571-14450162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:294
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):59, 40

               
               
               Conread position:238-673
               
               
               Cow position:chr7:22793578-22793154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 8

               
               
               Conread position:238-673
               
               
               Cow position:chr7:29510178-29509761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 11

               
               
               Conread position:238-673
               
               
               Cow position:chr7:37455569-37455130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 12

               
               
               Conread position:238-673
               
               
               Cow position:chr7:39444377-39444794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 33

               
               
               Conread position:238-673
               
               
               Cow position:chr7:41315179-41315631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 205

               
               
               Conread position:238-673
               
               
               Cow position:chr7:47547650-47547202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 81

               
               
               Conread position:238-673
               
               
               Cow position:chr7:47931547-47931988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:309
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):39, 14

               
               
               Conread position:238-674
               
               
               Cow position:chr7:32240839-32240439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:309
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):5, 56

               
               
               Conread position:238-674
               
               
               Cow position:chr7:41293505-41293942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 15

               
               
               Conread position:238-675
               
               
               Cow position:chr7:42894704-42894256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 197

               
               
               Conread position:238-675
               
               
               Cow position:chr7:64268746-64269180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:296
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):81, 125

               
               
               Conread position:238-687
               
               
               Cow position:chr7:40406888-40406456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 15

               
               
               Conread position:239-400
               
               
               Cow position:chr7:35793321-35793158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):95, 32

               
               
               Conread position:239-405
               
               
               Cow position:chr7:49068594-49068763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):61, 46

               
               
               Conread position:239-409
               
               
               Cow position:chr7:31074330-31074502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):79, 102

               
               
               Conread position:239-411
               
               
               Cow position:chr7:44942800-44942629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:239-413
               
               
               Cow position:chr7:1782956-1783147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:239-417
               
               
               Cow position:chr7:39528549-39528719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:239-417
               
               
               Cow position:chr7:67099580-67099399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):87, 115

               
               
               Conread position:239-422
               
               
               Cow position:chr7:43450787-43450601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):87, 26

               
               
               Conread position:239-422
               
               
               Cow position:chr7:51621635-51621456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):162, 71

               
               
               Conread position:239-425
               
               
               Cow position:chr7:53996541-53996357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):89, 42

               
               
               Conread position:239-456
               
               
               Cow position:chr7:4138517-4138731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):86, 113

               
               
               Conread position:239-468
               
               
               Cow position:chr7:63300443-63300213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):89, 177

               
               
               Conread position:239-495
               
               
               Cow position:chr7:25464813-25464551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):87, 122

               
               
               Conread position:239-513
               
               
               Cow position:chr7:62542909-62542625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):78, 34

               
               
               Conread position:239-539
               
               
               Cow position:chr7:39131260-39131549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):190, 86

               
               
               Conread position:239-556
               
               
               Cow position:chr7:57829473-57829147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:239-559
               
               
               Cow position:chr7:61779097-61778762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):80, 50

               
               
               Conread position:239-586
               
               
               Cow position:chr7:40425065-40425426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):94, 119

               
               
               Conread position:239-606
               
               
               Cow position:chr7:5052322-5052688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):101, 232

               
               
               Conread position:239-620
               
               
               Cow position:chr7:9781477-9781871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:263
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):79, 124

               
               
               Conread position:239-623
               
               
               Cow position:chr7:68315486-68315104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:268
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):81, 142

               
               
               Conread position:239-631
               
               
               Cow position:chr7:18856744-18857137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:261
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):94, 115

               
               
               Conread position:239-637
               
               
               Cow position:chr7:16667817-16667427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:266
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):89, 172

               
               
               Conread position:239-662
               
               
               Cow position:chr7:29474901-29474505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:295
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):79, 112

               
               
               Conread position:239-666
               
               
               Cow position:chr7:58170968-58170555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 46

               
               
               Conread position:239-667
               
               
               Cow position:chr7:67873440-67872995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 196

               
               
               Conread position:239-670
               
               
               Cow position:chr7:42335564-42335157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:295
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):61, 46

               
               
               Conread position:239-671
               
               
               Cow position:chr7:39939982-39939546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:286
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):94, 123

               
               
               Conread position:239-673
               
               
               Cow position:chr7:9137094-9136646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 52

               
               
               Conread position:239-673
               
               
               Cow position:chr7:16022536-16022109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 80

               
               
               Conread position:239-673
               
               
               Cow position:chr7:17782448-17782865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 46

               
               
               Conread position:239-673
               
               
               Cow position:chr7:25393543-25393097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 95

               
               
               Conread position:239-673
               
               
               Cow position:chr7:32692783-32693243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:315
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):69, 96

               
               
               Conread position:239-674
               
               
               Cow position:chr7:58967514-58967081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 236

               
               
               Conread position:239-674
               
               
               Cow position:chr7:68172914-68173348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:298
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):86, 14

               
               
               Conread position:239-675
               
               
               Cow position:chr7:28324873-28324440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:291
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):101, 124

               
               
               Conread position:239-675
               
               
               Cow position:chr7:37698052-37697609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 192

               
               
               Conread position:239-675
               
               
               Cow position:chr7:40009072-40008623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 34

               
               
               Conread position:239-675
               
               
               Cow position:chr7:40321722-40321294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 34

               
               
               Conread position:239-675
               
               
               Cow position:chr7:63112533-63112967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 132

               
               
               Conread position:239-675
               
               
               Cow position:chr7:63378642-63378198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:287
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):37, 125

               
               
               Conread position:239-675
               
               
               Cow position:chr7:66894296-66894735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 117

               
               
               Conread position:239-676
               
               
               Cow position:chr7:535476-535921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 85

               
               
               Conread position:239-701
               
               
               Cow position:chr7:24796466-24796910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:314
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):89, 35

               
               
               Conread position:240-381
               
               
               Cow position:chr7:9093535-9093679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):86, 54

               
               
               Conread position:240-411
               
               
               Cow position:chr7:43853085-43853258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:240-412
               
               
               Cow position:chr7:46191717-46191888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:240-415
               
               
               Cow position:chr7:39988976-39988801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):173, 94

               
               
               Conread position:240-416
               
               
               Cow position:chr7:26309424-26309602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):86, 14

               
               
               Conread position:240-417
               
               
               Cow position:chr7:9858595-9858421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:240-417
               
               
               Cow position:chr7:11151226-11151407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):86, 125

               
               
               Conread position:240-417
               
               
               Cow position:chr7:53271251-53271078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):60, 45

               
               
               Conread position:240-422
               
               
               Cow position:chr7:24022230-24022403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):175, 47

               
               
               Conread position:240-422
               
               
               Cow position:chr7:40414759-40414937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):179, 65

               
               
               Conread position:240-425
               
               
               Cow position:chr7:12329983-12330169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):76, 89

               
               
               Conread position:240-425
               
               
               Cow position:chr7:30012072-30011891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:240-427
               
               
               Cow position:chr7:50442652-50442838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):86, 150

               
               
               Conread position:240-429
               
               
               Cow position:chr7:42460910-42460719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:240-432
               
               
               Cow position:chr7:23819135-23818945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):172, 33

               
               
               Conread position:240-442
               
               
               Cow position:chr7:7510607-7510814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:240-446
               
               
               Cow position:chr7:58682976-58683179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):86, 34

               
               
               Conread position:240-460
               
               
               Cow position:chr7:17000971-17000746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):86, 13

               
               
               Conread position:240-467
               
               
               Cow position:chr7:40322851-40322642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:240-470
               
               
               Cow position:chr7:6469870-6469632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):7, 201

               
               
               Conread position:240-473
               
               
               Cow position:chr7:31523789-31523553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):73, 95

               
               
               Conread position:240-473
               
               
               Cow position:chr7:41729064-41729295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):7, 19

               
               
               Conread position:240-474
               
               
               Cow position:chr7:26871747-26871985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):97, 192

               
               
               Conread position:240-474
               
               
               Cow position:chr7:50166271-50166036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):89, 27

               
               
               Conread position:240-475
               
               
               Cow position:chr7:6116124-6116358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 84

               
               
               Conread position:240-475
               
               
               Cow position:chr7:53653526-53653755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):174, 70

               
               
               Conread position:240-479
               
               
               Cow position:chr7:9175720-9175480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):72, 36

               
               
               Conread position:240-482
               
               
               Cow position:chr7:37497945-37498196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):86, 201

               
               
               Conread position:240-504
               
               
               Cow position:chr7:23464506-23464237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):66, 150

               
               
               Conread position:240-506
               
               
               Cow position:chr7:9070696-9070435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):95, 83

               
               
               Conread position:240-512
               
               
               Cow position:chr7:62953754-62953483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):54, 45

               
               
               Conread position:240-521
               
               
               Cow position:chr7:39838621-39838920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):70, 9

               
               
               Conread position:240-528
               
               
               Cow position:chr7:38429474-38429758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:211
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):178, 79

               
               
               Conread position:240-539
               
               
               Cow position:chr7:428544-428841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):166, 80

               
               
               Conread position:240-539
               
               
               Cow position:chr7:36856778-36856485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:206
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):108, 87

               
               
               Conread position:240-539
               
               
               Cow position:chr7:69133202-69132894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):10, 183

               
               
               Conread position:240-544
               
               
               Cow position:chr7:54054840-54054524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):58, 44

               
               
               Conread position:240-561
               
               
               Cow position:chr7:60732386-60732724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):14, 176

               
               
               Conread position:240-574
               
               
               Cow position:chr7:35300178-35300516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:243
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):154, 46

               
               
               Conread position:240-602
               
               
               Cow position:chr7:48020668-48020294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 84

               
               
               Conread position:240-608
               
               
               Cow position:chr7:23251341-23251689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:268
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):244, 45

               
               
               Conread position:240-622
               
               
               Cow position:chr7:50565951-50566356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 239

               
               
               Conread position:240-625
               
               
               Cow position:chr7:11960634-11960270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:275
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):173, 33

               
               
               Conread position:240-628
               
               
               Cow position:chr7:20918120-20918496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:285
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):152, 45

               
               
               Conread position:240-629
               
               
               Cow position:chr7:14536045-14536432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):240, 57

               
               
               Conread position:240-643
               
               
               Cow position:chr7:37394543-37394154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 176

               
               
               Conread position:240-652
               
               
               Cow position:chr7:69054776-69054379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:280
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):7, 58

               
               
               Conread position:240-663
               
               
               Cow position:chr7:20535115-20534690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 195

               
               
               Conread position:240-663
               
               
               Cow position:chr7:49105959-49106385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 83

               
               
               Conread position:240-663
               
               
               Cow position:chr7:51020024-51019604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 97

               
               
               Conread position:240-664
               
               
               Cow position:chr7:19466014-19466449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 71

               
               
               Conread position:240-669
               
               
               Cow position:chr7:35274843-35275265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 66

               
               
               Conread position:240-669
               
               
               Cow position:chr7:48815877-48815444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:280
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):69, 36

               
               
               Conread position:240-670
               
               
               Cow position:chr7:18508302-18508721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 55

               
               
               Conread position:240-670
               
               
               Cow position:chr7:30931740-30932166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):240, 57

               
               
               Conread position:240-670
               
               
               Cow position:chr7:44596464-44596883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):242, 73

               
               
               Conread position:240-671
               
               
               Cow position:chr7:69066922-69066506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 45

               
               
               Conread position:240-672
               
               
               Cow position:chr7:4582486-4582927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 69

               
               
               Conread position:240-672
               
               
               Cow position:chr7:50075509-50075918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):290, 51

               
               
               Conread position:240-673
               
               
               Cow position:chr7:10390-9951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 93

               
               
               Conread position:240-673
               
               
               Cow position:chr7:1761975-1761526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 95

               
               
               Conread position:240-673
               
               
               Cow position:chr7:4129544-4129983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 46

               
               
               Conread position:240-673
               
               
               Cow position:chr7:4719983-4720427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 196

               
               
               Conread position:240-673
               
               
               Cow position:chr7:15855100-15855501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):287, 34

               
               
               Conread position:240-673
               
               
               Cow position:chr7:18544147-18544570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 79

               
               
               Conread position:240-673
               
               
               Cow position:chr7:20968667-20968240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 194

               
               
               Conread position:240-673
               
               
               Cow position:chr7:23679349-23679788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 67

               
               
               Conread position:240-673
               
               
               Cow position:chr7:33393551-33393119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 94

               
               
               Conread position:240-673
               
               
               Cow position:chr7:34569432-34569007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:294
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):133, 78

               
               
               Conread position:240-673
               
               
               Cow position:chr7:39416149-39415712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 68

               
               
               Conread position:240-673
               
               
               Cow position:chr7:41871865-41872284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 10

               
               
               Conread position:240-673
               
               
               Cow position:chr7:53785746-53786151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 46

               
               
               Conread position:240-673
               
               
               Cow position:chr7:55687939-55688390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 165

               
               
               Conread position:240-673
               
               
               Cow position:chr7:68051354-68050905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:298
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):59, 151

               
               
               Conread position:240-673
               
               
               Cow position:chr7:68170359-68170793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 34

               
               
               Conread position:240-674
               
               
               Cow position:chr7:11176492-11176900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 80

               
               
               Conread position:240-674
               
               
               Cow position:chr7:14458688-14459110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:280
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):77, 100

               
               
               Conread position:240-674
               
               
               Cow position:chr7:20537598-20537168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 44

               
               
               Conread position:240-674
               
               
               Cow position:chr7:23663854-23664291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:293
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):95, 123

               
               
               Conread position:240-674
               
               
               Cow position:chr7:44454025-44454464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 9

               
               
               Conread position:240-675
               
               
               Cow position:chr7:17713220-17713660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 9

               
               
               Conread position:240-675
               
               
               Cow position:chr7:32893996-32894448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 293

               
               
               Conread position:240-677
               
               
               Cow position:chr7:14029549-14029138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 81

               
               
               Conread position:240-691
               
               
               Cow position:chr7:34433036-34433491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 111

               
               
               Conread position:240-691
               
               
               Cow position:chr7:53806567-53807028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:314
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):72, 9

               
               
               Conread position:241-405
               
               
               Cow position:chr7:20180959-20181120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:241-411
               
               
               Cow position:chr7:10945035-10944861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:241-411
               
               
               Cow position:chr7:20936385-20936554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):38, 8

               
               
               Conread position:241-421
               
               
               Cow position:chr7:40344636-40344811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:241-422
               
               
               Cow position:chr7:18958299-18958480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):87, 11

               
               
               Conread position:241-422
               
               
               Cow position:chr7:53834346-53834531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:241-431
               
               
               Cow position:chr7:32549165-32549358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):6, 120

               
               
               Conread position:241-454
               
               
               Cow position:chr7:68240700-68240491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):174, 32

               
               
               Conread position:241-457
               
               
               Cow position:chr7:58800413-58800193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):6, 117

               
               
               Conread position:241-463
               
               
               Cow position:chr7:18247596-18247811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):173, 11

               
               
               Conread position:241-468
               
               
               Cow position:chr7:9816242-9816011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):77, 137

               
               
               Conread position:241-469
               
               
               Cow position:chr7:32884396-32884178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:241-474
               
               
               Cow position:chr7:11487435-11487665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):80, 8

               
               
               Conread position:241-476
               
               
               Cow position:chr7:3431121-3431360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):85, 197

               
               
               Conread position:241-476
               
               
               Cow position:chr7:9077566-9077805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):84, 95

               
               
               Conread position:241-479
               
               
               Cow position:chr7:56556912-56557145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):173, 9

               
               
               Conread position:241-492
               
               
               Cow position:chr7:39947006-39947258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):28, 8

               
               
               Conread position:241-557
               
               
               Cow position:chr7:8110003-8110331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:218
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):72, 116

               
               
               Conread position:241-579
               
               
               Cow position:chr7:50900431-50900790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):42, 271

               
               
               Conread position:241-597
               
               
               Cow position:chr7:14524713-14524359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 30

               
               
               Conread position:241-626
               
               
               Cow position:chr7:2578994-2579390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 94

               
               
               Conread position:241-670
               
               
               Cow position:chr7:14519800-14520225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 87

               
               
               Conread position:241-671
               
               
               Cow position:chr7:48715107-48714657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 205

               
               
               Conread position:241-672
               
               
               Cow position:chr7:36570106-36569664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 185

               
               
               Conread position:241-672
               
               
               Cow position:chr7:53053164-53053598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 8

               
               
               Conread position:241-673
               
               
               Cow position:chr7:249263-249698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 192

               
               
               Conread position:241-673
               
               
               Cow position:chr7:27990435-27990875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 60

               
               
               Conread position:241-673
               
               
               Cow position:chr7:39158929-39158485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:300
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):85, 177

               
               
               Conread position:241-674
               
               
               Cow position:chr7:50860237-50859815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 8

               
               
               Conread position:241-675
               
               
               Cow position:chr7:52378863-52378430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:300
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):174, 82

               
               
               Conread position:241-675
               
               
               Cow position:chr7:66748290-66748719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 212

               
               
               Conread position:241-687
               
               
               Cow position:chr7:27079868-27079423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 62

               
               
               Conread position:242-405
               
               
               Cow position:chr7:2247836-2248002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):65, 53

               
               
               Conread position:242-413
               
               
               Cow position:chr7:16285334-16285507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):86, 124

               
               
               Conread position:242-430
               
               
               Cow position:chr7:12918341-12918527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:242-435
               
               
               Cow position:chr7:34216444-34216259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:242-444
               
               
               Cow position:chr7:6821287-6821082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):92, 11

               
               
               Conread position:242-458
               
               
               Cow position:chr7:51685256-51685037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):86, 34

               
               
               Conread position:242-470
               
               
               Cow position:chr7:38458626-38458386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):24, 170

               
               
               Conread position:242-479
               
               
               Cow position:chr7:28441416-28441182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):56, 43

               
               
               Conread position:242-479
               
               
               Cow position:chr7:38136045-38135814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):113, 77

               
               
               Conread position:242-492
               
               
               Cow position:chr7:55315963-55316210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):51, 83

               
               
               Conread position:242-511
               
               
               Cow position:chr7:17750600-17750868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):87, 194

               
               
               Conread position:242-519
               
               
               Cow position:chr7:12494880-12495148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):170, 86

               
               
               Conread position:242-530
               
               
               Cow position:chr7:63121174-63121468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):87, 41

               
               
               Conread position:242-539
               
               
               Cow position:chr7:168417-168727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):78, 185

               
               
               Conread position:242-592
               
               
               Cow position:chr7:15559925-15559576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 78

               
               
               Conread position:242-648
               
               
               Cow position:chr7:61790112-61790523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 28

               
               
               Conread position:242-649
               
               
               Cow position:chr7:20168787-20168385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 35

               
               
               Conread position:242-650
               
               
               Cow position:chr7:29479762-29479352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 65

               
               
               Conread position:242-669
               
               
               Cow position:chr7:36248333-36247919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:289
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):237, 71

               
               
               Conread position:242-672
               
               
               Cow position:chr7:47513445-47513883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 32

               
               
               Conread position:242-673
               
               
               Cow position:chr7:15570278-15569850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 86

               
               
               Conread position:242-673
               
               
               Cow position:chr7:19797686-19798125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 11

               
               
               Conread position:242-673
               
               
               Cow position:chr7:29300536-29300951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 10

               
               
               Conread position:242-673
               
               
               Cow position:chr7:33720276-33719860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 34

               
               
               Conread position:242-673
               
               
               Cow position:chr7:40263431-40263845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):236, 79

               
               
               Conread position:242-674
               
               
               Cow position:chr7:47776105-47775674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 192

               
               
               Conread position:242-689
               
               
               Cow position:chr7:57659922-57660372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:294
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):84, 14

               
               
               Conread position:242-693
               
               
               Cow position:chr7:53097835-53097386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:309
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):5, 118

               
               
               Conread position:243-412
               
               
               Cow position:chr7:5914470-5914302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:243-474
               
               
               Cow position:chr7:50021226-50021452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):171, 37

               
               
               Conread position:243-477
               
               
               Cow position:chr7:11897702-11897469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):103, 43

               
               
               Conread position:243-479
               
               
               Cow position:chr7:26909523-26909758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:174
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):170, 91

               
               
               Conread position:243-615
               
               
               Cow position:chr7:49417846-49417463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 87

               
               
               Conread position:243-636
               
               
               Cow position:chr7:5026935-5027307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:263
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:243-640
               
               
               Cow position:chr7:32259957-32260364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:289
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):13, 78

               
               
               Conread position:243-664
               
               
               Cow position:chr7:25263610-25263187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 54

               
               
               Conread position:243-673
               
               
               Cow position:chr7:13963450-13963010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 78

               
               
               Conread position:243-673
               
               
               Cow position:chr7:50065877-50066305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 77

               
               
               Conread position:243-673
               
               
               Cow position:chr7:63707079-63707484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:291
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):74, 30

               
               
               Conread position:243-674
               
               
               Cow position:chr7:43711452-43711025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):241, 78

               
               
               Conread position:243-691
               
               
               Cow position:chr7:49751369-49750912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 151

               
               
               Conread position:245-468
               
               
               Cow position:chr7:53653233-53652996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):44, 96

               
               
               Conread position:245-624
               
               
               Cow position:chr7:42593026-42593417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 207

               
               
               Conread position:245-670
               
               
               Cow position:chr7:58862638-58863072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 60

               
               
               Conread position:245-672
               
               
               Cow position:chr7:4893087-4892677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):278, 62

               
               
               Conread position:245-673
               
               
               Cow position:chr7:13594013-13593584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:245-673
               
               
               Cow position:chr7:33386154-33385741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 28

               
               
               Conread position:245-673
               
               
               Cow position:chr7:56838285-56838690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 141

               
               
               Conread position:245-673
               
               
               Cow position:chr7:64572822-64573253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 82

               
               
               Conread position:245-675
               
               
               Cow position:chr7:39129363-39129787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 33

               
               
               Conread position:245-696
               
               
               Cow position:chr7:600553-600124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):239, 40

               
               
               Conread position:246-388
               
               
               Cow position:chr7:53702338-53702199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:246-428
               
               
               Cow position:chr7:25087479-25087299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):166, 64

               
               
               Conread position:246-501
               
               
               Cow position:chr7:41346792-41347054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):79, 193

               
               
               Conread position:246-559
               
               
               Cow position:chr7:8658751-8658431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 88

               
               
               Conread position:246-586
               
               
               Cow position:chr7:5199321-5199660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):236, 53

               
               
               Conread position:246-600
               
               
               Cow position:chr7:24220888-24220546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:259
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):173, 28

               
               
               Conread position:246-625
               
               
               Cow position:chr7:11958206-11958576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 21

               
               
               Conread position:246-673
               
               
               Cow position:chr7:18388157-18388591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 178

               
               
               Conread position:246-673
               
               
               Cow position:chr7:23568491-23568933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 200

               
               
               Conread position:246-673
               
               
               Cow position:chr7:26838889-26838468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:288
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):92, 177

               
               
               Conread position:246-673
               
               
               Cow position:chr7:36534263-36533839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 117

               
               
               Conread position:246-673
               
               
               Cow position:chr7:62603419-62602991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 185

               
               
               Conread position:246-674
               
               
               Cow position:chr7:57593662-57593247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:295
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):171, 27

               
               
               Conread position:246-675
               
               
               Cow position:chr7:30155710-30156153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 82

               
               
               Conread position:249-411
               
               
               Cow position:chr7:15951660-15951819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:249-411
               
               
               Cow position:chr7:19329075-19329236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:249-417
               
               
               Cow position:chr7:44094479-44094655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:249-512
               
               
               Cow position:chr7:61699473-61699729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):111, 58

               
               
               Conread position:249-528
               
               
               Cow position:chr7:18947525-18947792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):176, 58

               
               
               Conread position:249-539
               
               
               Cow position:chr7:9161436-9161726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:225
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):65, 85

               
               
               Conread position:249-569
               
               
               Cow position:chr7:43484299-43484627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:235
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):167, 25

               
               
               Conread position:249-630
               
               
               Cow position:chr7:4765073-4764691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 71

               
               
               Conread position:249-670
               
               
               Cow position:chr7:65978425-65978007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:272
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):120, 61

               
               
               Conread position:250-417
               
               
               Cow position:chr7:68144742-68144583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:250-539
               
               
               Cow position:chr7:30017289-30017575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 60

               
               
               Conread position:250-643
               
               
               Cow position:chr7:46818267-46818660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 21

               
               
               Conread position:250-673
               
               
               Cow position:chr7:56820355-56820764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 57

               
               
               Conread position:251-422
               
               
               Cow position:chr7:30154777-30154944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:251-460
               
               
               Cow position:chr7:40305024-40305231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):165, 58

               
               
               Conread position:251-671
               
               
               Cow position:chr7:15755212-15755640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 22

               
               
               Conread position:251-672
               
               
               Cow position:chr7:60547437-60547856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:294
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):49, 34

               
               
               Conread position:251-675
               
               
               Cow position:chr7:29302122-29302551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:293
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):82, 112

               
               
               Conread position:251-676
               
               
               Cow position:chr7:3304811-3304368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:304
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):75, 109

               
               
               Conread position:252-672
               
               
               Cow position:chr7:53382412-53382005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 55

               
               
               Conread position:253-433
               
               
               Cow position:chr7:21228318-21228499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:253-534
               
               
               Cow position:chr7:7535765-7535480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:210
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):164, 66

               
               
               Conread position:253-674
               
               
               Cow position:chr7:54513178-54513616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 73

               
               
               Conread position:254-412
               
               
               Cow position:chr7:8032671-8032514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):30, 39

               
               
               Conread position:254-412
               
               
               Cow position:chr7:32920370-32920530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):73, 103

               
               
               Conread position:254-422
               
               
               Cow position:chr7:15650614-15650787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:254-430
               
               
               Cow position:chr7:59184445-59184259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:254-499
               
               
               Cow position:chr7:14317168-14316922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):163, 66

               
               
               Conread position:254-540
               
               
               Cow position:chr7:33914198-33913911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):61, 31

               
               
               Conread position:254-671
               
               
               Cow position:chr7:3336332-3336742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 55

               
               
               Conread position:254-673
               
               
               Cow position:chr7:17966897-17967311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 19

               
               
               Conread position:256-422
               
               
               Cow position:chr7:11884056-11884221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):160, 61

               
               
               Conread position:257-405
               
               
               Cow position:chr7:11946106-11945961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:257-417
               
               
               Cow position:chr7:4060498-4060331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):66, 107

               
               
               Conread position:257-422
               
               
               Cow position:chr7:14535146-14534983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):158, 50

               
               
               Conread position:257-556
               
               
               Cow position:chr7:68857359-68857665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:217
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):71, 179

               
               
               Conread position:257-671
               
               
               Cow position:chr7:63946372-63946765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 31

               
               
               Conread position:257-673
               
               
               Cow position:chr7:11714216-11714620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 70

               
               
               Conread position:258-402
               
               
               Cow position:chr7:28584499-28584356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):11, 38

               
               
               Conread position:258-458
               
               
               Cow position:chr7:37023159-37022951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):63, 178

               
               
               Conread position:258-637
               
               
               Cow position:chr7:46051885-46051498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 190

               
               
               Conread position:259-426
               
               
               Cow position:chr7:35754899-35754728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:259-673
               
               
               Cow position:chr7:46823897-46823476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 168

               
               
               Conread position:259-673
               
               
               Cow position:chr7:48667627-48667234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 27

               
               
               Conread position:259-682
               
               
               Cow position:chr7:59168475-59168076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 27

               
               
               Conread position:261-434
               
               
               Cow position:chr7:60121776-60121600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):56, 24

               
               
               Conread position:261-668
               
               
               Cow position:chr7:33298223-33298613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:272
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):17, 73

               
               
               Conread position:262-408
               
               
               Cow position:chr7:23823277-23823424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):62, 76

               
               
               Conread position:262-545
               
               
               Cow position:chr7:65325531-65325819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):49, 76

               
               
               Conread position:262-675
               
               
               Cow position:chr7:39167684-39167270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:278
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):40, 23

               
               
               Conread position:263-518
               
               
               Cow position:chr7:50494217-50493954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):28, 178

               
               
               Conread position:265-540
               
               
               Cow position:chr7:50858172-50857889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):18, 23

               
               
               Conread position:268-671
               
               
               Cow position:chr7:34412060-34412483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 19

               
               
               Conread position:269-460
               
               
               Cow position:chr7:68540383-68540579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):59, 158

               
               
               Conread position:269-676
               
               
               Cow position:chr7:39904304-39903907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 58

               
               
               Conread position:272-475
               
               
               Cow position:chr7:48563272-48563468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:279-670
               
               
               Cow position:chr7:29279816-29280212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 56

               
               
               Conread position:280-552
               
               
               Cow position:chr7:32222266-32221983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):134, 53

               
               
               Conread position:286-605
               
               
               Cow position:chr7:3256148-3256482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 48

               
               
               Conread position:286-675
               
               
               Cow position:chr7:40710324-40709914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 47

               
               
               Conread position:289-528
               
               
               Cow position:chr7:56886316-56886556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):11, 52

               
               
               Conread position:292-596
               
               
               Cow position:chr7:21565377-21565674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:222
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):119, 26

               
               
               Conread position:296-672
               
               
               Cow position:chr7:32710801-32711172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 35

               
               
               Conread position:297-673
               
               
               Cow position:chr7:64364340-64364721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 39

               
               
               Conread position:300-471
               
               
               Cow position:chr7:19414265-19414441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:300-663
               
               
               Cow position:chr7:60153633-60153256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 33

               
               
               Conread position:300-673
               
               
               Cow position:chr7:26737163-26737532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 34

               
               
               Conread position:300-673
               
               
               Cow position:chr7:38060243-38060626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 35

               
               
               Conread position:301-673
               
               
               Cow position:chr7:48406313-48406693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 21

               
               
               Conread position:302-609
               
               
               Cow position:chr7:34214769-34214467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):13, 23

               
               
               Conread position:302-670
               
               
               Cow position:chr7:52784626-52784991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 25

               
               
               Conread position:302-675
               
               
               Cow position:chr7:19981666-19982033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:269
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):116, 21

               
               
               Conread position:306-455
               
               
               Cow position:chr7:39472934-39473077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:306-620
               
               
               Cow position:chr7:38263850-38263526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):108, 123

               
               
               Conread position:308-469
               
               
               Cow position:chr7:21713861-21714024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):109, 36

               
               
               Conread position:308-535
               
               
               Cow position:chr7:57518252-57518028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):21, 39

               
               
               Conread position:308-673
               
               
               Cow position:chr7:26631638-26632004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 20

               
               
               Conread position:308-675
               
               
               Cow position:chr7:6155149-6154787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):110, 16

               
               
               Conread position:309-562
               
               
               Cow position:chr7:10381973-10381716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):108, 24

               
               
               Conread position:310-442
               
               
               Cow position:chr7:23170005-23169871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):108, 23

               
               
               Conread position:310-467
               
               
               Cow position:chr7:57066636-57066795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):114, 97

               
               
               Conread position:310-471
               
               
               Cow position:chr7:8090246-8090406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):108, 17

               
               
               Conread position:310-474
               
               
               Cow position:chr7:43307349-43307181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):16, 122

               
               
               Conread position:310-515
               
               
               Cow position:chr7:41103663-41103457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):108, 125

               
               
               Conread position:310-600
               
               
               Cow position:chr7:58923570-58923272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 23

               
               
               Conread position:310-655
               
               
               Cow position:chr7:56347651-56347991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:242
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):19, 110

               
               
               Conread position:310-667
               
               
               Cow position:chr7:15566923-15566583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:257
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):105, 12

               
               
               Conread position:310-670
               
               
               Cow position:chr7:17816921-17816564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 23

               
               
               Conread position:310-672
               
               
               Cow position:chr7:27283848-27283487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 104

               
               
               Conread position:310-673
               
               
               Cow position:chr7:14765953-14766334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 69

               
               
               Conread position:310-673
               
               
               Cow position:chr7:31094174-31094537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:260
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):10, 60

               
               
               Conread position:310-673
               
               
               Cow position:chr7:38697014-38696655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 23

               
               
               Conread position:310-673
               
               
               Cow position:chr7:40952691-40953055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 94

               
               
               Conread position:310-673
               
               
               Cow position:chr7:44986825-44986465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 23

               
               
               Conread position:310-673
               
               
               Cow position:chr7:62793971-62793590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 123

               
               
               Conread position:310-674
               
               
               Cow position:chr7:34422100-34422456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 23

               
               
               Conread position:310-675
               
               
               Cow position:chr7:57258851-57259225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 39

               
               
               Conread position:311-493
               
               
               Cow position:chr7:2894899-2894715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):18, 124

               
               
               Conread position:311-600
               
               
               Cow position:chr7:5853519-5853237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:216
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):108, 22

               
               
               Conread position:311-671
               
               
               Cow position:chr7:39518454-39518110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:256
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):124, 22

               
               
               Conread position:311-673
               
               
               Cow position:chr7:12201751-12202109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:271
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):108, 22

               
               
               Conread position:311-673
               
               
               Cow position:chr7:23646786-23646410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 219

               
               
               Conread position:311-673
               
               
               Cow position:chr7:36278468-36278102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 22

               
               
               Conread position:311-673
               
               
               Cow position:chr7:38082329-38081963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 124

               
               
               Conread position:311-673
               
               
               Cow position:chr7:45331713-45331352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 125

               
               
               Conread position:311-675
               
               
               Cow position:chr7:25867329-25867700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:266
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):197, 22

               
               
               Conread position:311-678
               
               
               Cow position:chr7:40067831-40067460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 15

               
               
               Conread position:312-468
               
               
               Cow position:chr7:8289739-8289891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):104, 22

               
               
               Conread position:312-613
               
               
               Cow position:chr7:40074855-40074544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:232
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):105, 126

               
               
               Conread position:312-648
               
               
               Cow position:chr7:33990123-33989793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:249
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):9, 22

               
               
               Conread position:313-600
               
               
               Cow position:chr7:49903942-49903652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 53

               
               
               Conread position:313-673
               
               
               Cow position:chr7:39155748-39155380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:255
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):155, 75

               
               
               Conread position:314-503
               
               
               Cow position:chr7:15739418-15739605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):104, 20

               
               
               Conread position:314-584
               
               
               Cow position:chr7:42637140-42636873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):104, 117

               
               
               Conread position:314-595
               
               
               Cow position:chr7:34974477-34974196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:212
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):104, 19

               
               
               Conread position:314-605
               
               
               Cow position:chr7:18188061-18188350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 19

               
               
               Conread position:314-670
               
               
               Cow position:chr7:41327866-41328228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 20

               
               
               Conread position:314-674
               
               
               Cow position:chr7:40189718-40189363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 22

               
               
               Conread position:315-443
               
               
               Cow position:chr7:13096146-13096017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:105
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):103, 18

               
               
               Conread position:315-528
               
               
               Cow position:chr7:37466680-37466462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):103, 19

               
               
               Conread position:315-630
               
               
               Cow position:chr7:9800522-9800205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:234
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):62, 18

               
               
               Conread position:315-670
               
               
               Cow position:chr7:20176542-20176899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 18

               
               
               Conread position:316-575
               
               
               Cow position:chr7:9926567-9926829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):71, 17

               
               
               Conread position:316-587
               
               
               Cow position:chr7:28544342-28544065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:208
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):98, 17

               
               
               Conread position:316-668
               
               
               Cow position:chr7:23936277-23935922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 17

               
               
               Conread position:317-510
               
               
               Cow position:chr7:10759544-10759744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):29, 124

               
               
               Conread position:317-528
               
               
               Cow position:chr7:9108626-9108414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):107, 27

               
               
               Conread position:317-674
               
               
               Cow position:chr7:32915280-32914917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 19

               
               
               Conread position:318-551
               
               
               Cow position:chr7:2816422-2816197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):187, 15

               
               
               Conread position:318-650
               
               
               Cow position:chr7:24146802-24146474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):163, 16

               
               
               Conread position:318-670
               
               
               Cow position:chr7:51319971-51319606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 15

               
               
               Conread position:319-552
               
               
               Cow position:chr7:39823435-39823672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:182
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):7, 97

               
               
               Conread position:320-673
               
               
               Cow position:chr7:59843587-59843948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 83

               
               
               Conread position:320-674
               
               
               Cow position:chr7:10943399-10943747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 17

               
               
               Conread position:321-663
               
               
               Cow position:chr7:26485727-26485390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 12

               
               
               Conread position:321-673
               
               
               Cow position:chr7:147576-147219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 14

               
               
               Conread position:321-673
               
               
               Cow position:chr7:25511963-25512313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 12

               
               
               Conread position:322-586
               
               
               Cow position:chr7:32910697-32910435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:195
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):31, 11

               
               
               Conread position:322-673
               
               
               Cow position:chr7:28096030-28095693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 11

               
               
               Conread position:322-673
               
               
               Cow position:chr7:40303096-40303457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:268
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):44, 5

               
               
               Conread position:322-674
               
               
               Cow position:chr7:19230353-19230696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:248
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):60, 11

               
               
               Conread position:322-675
               
               
               Cow position:chr7:59076010-59075658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:250
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):93, 11

               
               
               Conread position:323-478
               
               
               Cow position:chr7:59689734-59689887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):95, 84

               
               
               Conread position:323-594
               
               
               Cow position:chr7:53772155-53772448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):94, 10

               
               
               Conread position:323-659
               
               
               Cow position:chr7:61823691-61824035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:245
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):73, 11

               
               
               Conread position:324-674
               
               
               Cow position:chr7:45747694-45748027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:252
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):95, 63

               
               
               Conread position:325-582
               
               
               Cow position:chr7:25873257-25872993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):92, 99

               
               
               Conread position:326-637
               
               
               Cow position:chr7:30816135-30816443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 76

               
               
               Conread position:327-475
               
               
               Cow position:chr7:52517482-52517332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):91, 108

               
               
               Conread position:327-670
               
               
               Cow position:chr7:37362032-37361694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 56

               
               
               Conread position:327-671
               
               
               Cow position:chr7:44049215-44049557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:249
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):92, 55

               
               
               Conread position:327-673
               
               
               Cow position:chr7:26466897-26466558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):23, 30

               
               
               Conread position:327-673
               
               
               Cow position:chr7:67820272-67819927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:238
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):102, 229

               
               
               Conread position:328-556
               
               
               Cow position:chr7:53606178-53606401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):139, 83

               
               
               Conread position:329-535
               
               
               Cow position:chr7:29122055-29121847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):9, 86

               
               
               Conread position:329-590
               
               
               Cow position:chr7:58350812-58351075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):157, 86

               
               
               Conread position:329-646
               
               
               Cow position:chr7:8977670-8977988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):198, 85

               
               
               Conread position:329-671
               
               
               Cow position:chr7:61552074-61551718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:256
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):90, 216

               
               
               Conread position:329-672
               
               
               Cow position:chr7:2172904-2172565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 92

               
               
               Conread position:329-674
               
               
               Cow position:chr7:14632519-14632183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:252
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):85, 101

               
               
               Conread position:331-667
               
               
               Cow position:chr7:9193085-9193430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 100

               
               
               Conread position:331-671
               
               
               Cow position:chr7:32079603-32079268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:244
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):93, 56

               
               
               Conread position:331-674
               
               
               Cow position:chr7:65122484-65122149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 80

               
               
               Conread position:333-673
               
               
               Cow position:chr7:10942715-10943048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):187, 23

               
               
               Conread position:337-475
               
               
               Cow position:chr7:9079100-9078964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:337-505
               
               
               Cow position:chr7:49630323-49630154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):91, 135

               
               
               Conread position:337-512
               
               
               Cow position:chr7:35245445-35245622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):139, 62

               
               
               Conread position:337-540
               
               
               Cow position:chr7:43297056-43296845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):80, 94

               
               
               Conread position:337-584
               
               
               Cow position:chr7:13228433-13228683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):77, 97

               
               
               Conread position:337-587
               
               
               Cow position:chr7:13133557-13133801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):81, 12

               
               
               Conread position:337-594
               
               
               Cow position:chr7:7505980-7506253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:205
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):64, 106

               
               
               Conread position:337-673
               
               
               Cow position:chr7:6058274-6057938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 98

               
               
               Conread position:337-673
               
               
               Cow position:chr7:35893562-35893218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 35

               
               
               Conread position:337-673
               
               
               Cow position:chr7:53697761-53698108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 98

               
               
               Conread position:337-674
               
               
               Cow position:chr7:39451003-39451325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 98

               
               
               Conread position:337-678
               
               
               Cow position:chr7:14174280-14174606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 78

               
               
               Conread position:337-684
               
               
               Cow position:chr7:10122838-10122506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:251
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):81, 50

               
               
               Conread position:338-669
               
               
               Cow position:chr7:16918194-16917867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:231
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):78, 8

               
               
               Conread position:339-605
               
               
               Cow position:chr7:5212333-5212607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:203
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):78, 8

               
               
               Conread position:339-673
               
               
               Cow position:chr7:2884482-2884151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:235
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):7, 80

               
               
               Conread position:339-673
               
               
               Cow position:chr7:53613277-53612953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):135, 79

               
               
               Conread position:339-674
               
               
               Cow position:chr7:11869696-11870024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 77

               
               
               Conread position:340-670
               
               
               Cow position:chr7:48243815-48243485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 95

               
               
               Conread position:343-605
               
               
               Cow position:chr7:8272802-8272530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:203
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):71, 92

               
               
               Conread position:344-674
               
               
               Cow position:chr7:3311978-3311646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 75

               
               
               Conread position:345-674
               
               
               Cow position:chr7:3283497-3283166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 74

               
               
               Conread position:347-673
               
               
               Cow position:chr7:2896896-2896567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 52

               
               
               Conread position:349-673
               
               
               Cow position:chr7:37142239-37142557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:232
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):70, 52

               
               
               Conread position:353-559
               
               
               Cow position:chr7:8102551-8102339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):61, 82

               
               
               Conread position:353-675
               
               
               Cow position:chr7:59558047-59558357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):62, 80

               
               
               Conread position:354-579
               
               
               Cow position:chr7:56081725-56081504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):65, 84

               
               
               Conread position:354-672
               
               
               Cow position:chr7:21650228-21649910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:232
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):65, 71

               
               
               Conread position:354-673
               
               
               Cow position:chr7:19267241-19267562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 75

               
               
               Conread position:354-692
               
               
               Cow position:chr7:23256726-23257064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):66, 23

               
               
               Conread position:355-675
               
               
               Cow position:chr7:27509843-27509522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:232
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):63, 76

               
               
               Conread position:355-675
               
               
               Cow position:chr7:43882209-43881883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:227
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):75, 166

               
               
               Conread position:359-675
               
               
               Cow position:chr7:39170034-39169707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):70, 241

               
               
               Conread position:361-673
               
               
               Cow position:chr7:45927043-45927348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 78

               
               
               Conread position:362-673
               
               
               Cow position:chr7:40121593-40121273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:240
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):52, 169

               
               
               Conread position:363-671
               
               
               Cow position:chr7:17757153-17756848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 40

               
               
               Conread position:363-673
               
               
               Cow position:chr7:39930404-39930105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 29

               
               
               Conread position:367-616
               
               
               Cow position:chr7:21166126-21166387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):63, 158

               
               
               Conread position:367-655
               
               
               Cow position:chr7:32372974-32372684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:214
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):19, 46

               
               
               Conread position:367-658
               
               
               Cow position:chr7:3773150-3773448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:217
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):46, 68

               
               
               Conread position:367-672
               
               
               Cow position:chr7:2923764-2923450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:220
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):47, 64

               
               
               Conread position:367-673
               
               
               Cow position:chr7:44589742-44590039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:230
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):96, 36

               
               
               Conread position:367-674
               
               
               Cow position:chr7:1375810-1375500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:219
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):70, 159

               
               
               Conread position:367-675
               
               
               Cow position:chr7:8812821-8813121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):46, 57

               
               
               Conread position:368-686
               
               
               Cow position:chr7:5723818-5723491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:228
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):61, 264

               
               
               Conread position:371-658
               
               
               Cow position:chr7:43103321-43103633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):48, 160

               
               
               Conread position:372-673
               
               
               Cow position:chr7:4418348-4418659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:221
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):64, 46

               
               
               Conread position:374-586
               
               
               Cow position:chr7:51638457-51638677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):11, 42

               
               
               Conread position:376-663
               
               
               Cow position:chr7:34223801-34223501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:222
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):48, 43

               
               
               Conread position:376-674
               
               
               Cow position:chr7:45593146-45592845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 43

               
               
               Conread position:377-622
               
               
               Cow position:chr7:8826921-8826675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):93, 38

               
               
               Conread position:379-674
               
               
               Cow position:chr7:14541965-14542246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):32, 37

               
               
               Conread position:396-584
               
               
               Cow position:chr7:58953762-58953569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):23, 103

               
               
               Conread position:396-640
               
               
               Cow position:chr7:40051672-40051919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:194
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):28, 23

               
               
               Conread position:399-603
               
               
               Cow position:chr7:8375351-8375146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:166
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):19, 26

               
               
               Conread position:399-671
               
               
               Cow position:chr7:41879409-41879692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):72, 16

               
               
               Conread position:400-589
               
               
               Cow position:chr7:14353705-14353902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):18, 38

               
               
               Conread position:404-674
               
               
               Cow position:chr7:53269278-53268997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):31, 18

               
               
               Conread position:405-667
               
               
               Cow position:chr7:42460518-42460249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):66, 6

               
               
               Conread position:405-673
               
               
               Cow position:chr7:19095951-19096224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):13, 32

               
               
               Conread position:405-673
               
               
               Cow position:chr7:28584325-28584056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):13, 33

               
               
               Conread position:407-579
               
               
               Cow position:chr7:26861377-26861209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):72, 5

               
               
               Conread position:409-671
               
               
               Cow position:chr7:39042670-39042414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 27

               
               
               Conread position:410-670
               
               
               Cow position:chr7:49942358-49942616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):111, 26

               
               
               Conread position:411-674
               
               
               Cow position:chr7:58428151-58427901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):7, 14

               
               
               Conread position:412-671
               
               
               Cow position:chr7:27349166-27349418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):16, 57

               
               
               Conread position:415-665
               
               
               Cow position:chr7:23640888-23641147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):8, 68

               
               
               Conread position:417-670
               
               
               Cow position:chr7:205802-205561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):230, 19

               
               
               Conread position:417-671
               
               
               Cow position:chr7:64102347-64102599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:186
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):94, 18

               
               
               Conread position:417-673
               
               
               Cow position:chr7:44094871-44095136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):52, 19

               
               
               Conread position:417-675
               
               
               Cow position:chr7:32819882-32819617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 18

               
               
               Conread position:432-674
               
               
               Cow position:chr7:35652023-35652274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):52, 37

               
               
               Conread position:434-673
               
               
               Cow position:chr7:3729135-3728898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):50, 95

               
               
               Conread position:434-673
               
               
               Cow position:chr7:61765365-61765121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):36, 97

               
               
               Conread position:436-651
               
               
               Cow position:chr7:28428053-28427845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):43, 87

               
               
               Conread position:436-672
               
               
               Cow position:chr7:16220080-16220318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):46, 34

               
               
               Conread position:436-687
               
               
               Cow position:chr7:7476402-7476653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:194
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):46, 113

               
               
               Conread position:439-587
               
               
               Cow position:chr7:19846106-19846258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:439-605
               
               
               Cow position:chr7:5300349-5300520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:439-673
               
               
               Cow position:chr7:27551139-27551366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):55, 82

               
               
               Conread position:439-673
               
               
               Cow position:chr7:34004392-34004174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:439-674
               
               
               Cow position:chr7:11715757-11715510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:191
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):17, 88

               
               
               Conread position:439-674
               
               
               Cow position:chr7:28090276-28090046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):45, 83

               
               
               Conread position:439-674
               
               
               Cow position:chr7:39528949-39529194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:186
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):39, 160

               
               
               Conread position:440-565
               
               
               Cow position:chr7:13095762-13095635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):40, 87

               
               
               Conread position:440-605
               
               
               Cow position:chr7:35742360-35742535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:440-605
               
               
               Cow position:chr7:43450291-43450120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):45, 126

               
               
               Conread position:440-625
               
               
               Cow position:chr7:65597563-65597748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):88, 80

               
               
               Conread position:440-672
               
               
               Cow position:chr7:54637587-54637820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):26, 43

               
               
               Conread position:440-673
               
               
               Cow position:chr7:24564576-24564810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):88, 56

               
               
               Conread position:445-585
               
               
               Cow position:chr7:58296851-58296997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):39, 78

               
               
               Conread position:447-675
               
               
               Cow position:chr7:42431870-42431629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:448-673
               
               
               Cow position:chr7:23619048-23619278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:184
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):20, 77

               
               
               Conread position:454-673
               
               
               Cow position:chr7:27361113-27360889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:454-674
               
               
               Cow position:chr7:32824227-32824447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):30, 17

               
               
               Conread position:455-673
               
               
               Cow position:chr7:26012452-26012231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:166
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:461-666
               
               
               Cow position:chr7:40262127-40262329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):66, 46

               
               
               Conread position:480-673
               
               
               Cow position:chr7:61601377-61601575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:483-673
               
               
               Cow position:chr7:10345427-10345625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:483-673
               
               
               Cow position:chr7:14079171-14079361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:485-675
               
               
               Cow position:chr7:6745200-6745006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):38, 102

               
               
               Conread position:485-675
               
               
               Cow position:chr7:33068300-33068495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):42, 114

               
               
               Conread position:194-422
               
               
               Cow position:chr8:9815148-9814922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):15, 23

               
               
               Conread position:205-536
               
               
               Cow position:chr8:4525328-4524997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 97

               
               
               Conread position:209-412
               
               
               Cow position:chr8:47707277-47707474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):34, 65

               
               
               Conread position:214-469
               
               
               Cow position:chr8:43940661-43940919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):111, 16

               
               
               Conread position:219-387
               
               
               Cow position:chr8:23596537-23596698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:225-387
               
               
               Cow position:chr8:10639968-10639800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):82, 136

               
               
               Conread position:226-539
               
               
               Cow position:chr8:53552898-53552588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):198, 94

               
               
               Conread position:226-673
               
               
               Cow position:chr8:24498476-24498024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 130

               
               
               Conread position:231-492
               
               
               Cow position:chr8:18647151-18647405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):240, 45

               
               
               Conread position:232-675
               
               
               Cow position:chr8:36060055-36059614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:307
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):86, 62

               
               
               Conread position:233-443
               
               
               Cow position:chr8:3762369-3762155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):55, 47

               
               
               Conread position:233-510
               
               
               Cow position:chr8:6665322-6665612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):86, 129

               
               
               Conread position:233-673
               
               
               Cow position:chr8:20079871-20080290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):294, 40

               
               
               Conread position:233-673
               
               
               Cow position:chr8:35504002-35504460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 134

               
               
               Conread position:234-377
               
               
               Cow position:chr8:20850141-20850281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):14, 40

               
               
               Conread position:234-390
               
               
               Cow position:chr8:57041413-57041569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):9, 95

               
               
               Conread position:234-416
               
               
               Cow position:chr8:45167411-45167597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:234-417
               
               
               Cow position:chr8:36397468-36397650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):65, 87

               
               
               Conread position:234-417
               
               
               Cow position:chr8:54306571-54306390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):111, 94

               
               
               Conread position:234-422
               
               
               Cow position:chr8:11216641-11216826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):66, 18

               
               
               Conread position:234-422
               
               
               Cow position:chr8:16216276-16216088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):92, 18

               
               
               Conread position:234-422
               
               
               Cow position:chr8:19378473-19378280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):57, 19

               
               
               Conread position:234-427
               
               
               Cow position:chr8:43052191-43051996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:234-436
               
               
               Cow position:chr8:54546816-54546604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):69, 18

               
               
               Conread position:234-449
               
               
               Cow position:chr8:53587106-53587316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):56, 15

               
               
               Conread position:234-466
               
               
               Cow position:chr8:40633649-40633883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):78, 42

               
               
               Conread position:234-467
               
               
               Cow position:chr8:28210204-28209965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:181
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):78, 209

               
               
               Conread position:234-469
               
               
               Cow position:chr8:39329640-39329876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):92, 120

               
               
               Conread position:234-472
               
               
               Cow position:chr8:37672266-37672013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):9, 210

               
               
               Conread position:234-502
               
               
               Cow position:chr8:52773151-52772877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):92, 15

               
               
               Conread position:234-503
               
               
               Cow position:chr8:55454879-55454616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):190, 18

               
               
               Conread position:234-511
               
               
               Cow position:chr8:4655925-4656193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):181, 18

               
               
               Conread position:234-519
               
               
               Cow position:chr8:55974595-55974886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):14, 41

               
               
               Conread position:234-521
               
               
               Cow position:chr8:49305529-49305818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 203

               
               
               Conread position:234-539
               
               
               Cow position:chr8:28228457-28228160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):171, 45

               
               
               Conread position:234-539
               
               
               Cow position:chr8:41721973-41722272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:226
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):85, 127

               
               
               Conread position:234-565
               
               
               Cow position:chr8:19474863-19475206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:243
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):94, 19

               
               
               Conread position:234-566
               
               
               Cow position:chr8:44449388-44449718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 39

               
               
               Conread position:234-567
               
               
               Cow position:chr8:6194200-6193847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 98

               
               
               Conread position:234-580
               
               
               Cow position:chr8:16413596-16413945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:251
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:234-584
               
               
               Cow position:chr8:26305646-26306000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):90, 18

               
               
               Conread position:234-596
               
               
               Cow position:chr8:48482584-48482965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:254
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):45, 133

               
               
               Conread position:234-611
               
               
               Cow position:chr8:27608685-27608286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:264
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):95, 19

               
               
               Conread position:234-636
               
               
               Cow position:chr8:12214217-12213824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 86

               
               
               Conread position:234-637
               
               
               Cow position:chr8:8189838-8190256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 103

               
               
               Conread position:234-641
               
               
               Cow position:chr8:51661379-51661794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:265
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):54, 127

               
               
               Conread position:234-663
               
               
               Cow position:chr8:31297486-31297054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 39

               
               
               Conread position:234-665
               
               
               Cow position:chr8:1620506-1620940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 49

               
               
               Conread position:234-667
               
               
               Cow position:chr8:32460586-32461025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:274
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):11, 74

               
               
               Conread position:234-673
               
               
               Cow position:chr8:6724146-6724564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 57

               
               
               Conread position:234-673
               
               
               Cow position:chr8:10971053-10970603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 202

               
               
               Conread position:234-673
               
               
               Cow position:chr8:17046542-17046986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 18

               
               
               Conread position:234-673
               
               
               Cow position:chr8:42794096-42794534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 15

               
               
               Conread position:234-674
               
               
               Cow position:chr8:1024177-1023734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 19

               
               
               Conread position:234-684
               
               
               Cow position:chr8:54303231-54302799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 40

               
               
               Conread position:234-687
               
               
               Cow position:chr8:10456679-10456229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 15

               
               
               Conread position:234-698
               
               
               Cow position:chr8:10082103-10081677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 34

               
               
               Conread position:235-388
               
               
               Cow position:chr8:6160989-6160836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):112, 14

               
               
               Conread position:235-402
               
               
               Cow position:chr8:5730247-5730082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:235-422
               
               
               Cow position:chr8:55725549-55725739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):91, 161

               
               
               Conread position:235-423
               
               
               Cow position:chr8:50282097-50281905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:235-425
               
               
               Cow position:chr8:28509240-28509427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):180, 12

               
               
               Conread position:235-433
               
               
               Cow position:chr8:35452791-35452593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):8, 145

               
               
               Conread position:235-452
               
               
               Cow position:chr8:3914814-3914589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):44, 15

               
               
               Conread position:235-452
               
               
               Cow position:chr8:48555446-48555658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):182, 15

               
               
               Conread position:235-468
               
               
               Cow position:chr8:19727669-19727433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):81, 14

               
               
               Conread position:235-487
               
               
               Cow position:chr8:22599874-22600132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):84, 14

               
               
               Conread position:235-495
               
               
               Cow position:chr8:22615238-22615502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):75, 14

               
               
               Conread position:235-518
               
               
               Cow position:chr8:53746355-53746647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):152, 84

               
               
               Conread position:235-580
               
               
               Cow position:chr8:37391141-37391492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 98

               
               
               Conread position:235-586
               
               
               Cow position:chr8:37291870-37292227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 17

               
               
               Conread position:235-600
               
               
               Cow position:chr8:11927354-11926996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:267
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):50, 14

               
               
               Conread position:235-666
               
               
               Cow position:chr8:54052514-54052088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 87

               
               
               Conread position:235-671
               
               
               Cow position:chr8:20107578-20108008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 14

               
               
               Conread position:235-673
               
               
               Cow position:chr8:24512928-24513362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:310
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):63, 18

               
               
               Conread position:235-675
               
               
               Cow position:chr8:46235924-46235473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 191

               
               
               Conread position:235-686
               
               
               Cow position:chr8:42112598-42113040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 42

               
               
               Conread position:236-406
               
               
               Cow position:chr8:34092987-34092809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):57, 25

               
               
               Conread position:236-416
               
               
               Cow position:chr8:51501072-51501249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:236-422
               
               
               Cow position:chr8:19223446-19223630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):179, 16

               
               
               Conread position:236-423
               
               
               Cow position:chr8:21961650-21961467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):179, 49

               
               
               Conread position:236-426
               
               
               Cow position:chr8:22223436-22223624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):75, 17

               
               
               Conread position:236-455
               
               
               Cow position:chr8:55194392-55194168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):8, 105

               
               
               Conread position:236-461
               
               
               Cow position:chr8:2181284-2181519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):90, 13

               
               
               Conread position:236-468
               
               
               Cow position:chr8:1651808-1651577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):52, 13

               
               
               Conread position:236-482
               
               
               Cow position:chr8:19632549-19632305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):132, 50

               
               
               Conread position:236-482
               
               
               Cow position:chr8:55070930-55070683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):7, 39

               
               
               Conread position:236-538
               
               
               Cow position:chr8:43942946-43942646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):89, 249

               
               
               Conread position:236-542
               
               
               Cow position:chr8:6909945-6910253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:218
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):92, 16

               
               
               Conread position:236-559
               
               
               Cow position:chr8:53360034-53360345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):183, 71

               
               
               Conread position:236-594
               
               
               Cow position:chr8:37635781-37636136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 13

               
               
               Conread position:236-635
               
               
               Cow position:chr8:33125707-33125311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):282, 37

               
               
               Conread position:236-637
               
               
               Cow position:chr8:27138583-27138977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 13

               
               
               Conread position:236-671
               
               
               Cow position:chr8:46952732-46952305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:298
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):92, 17

               
               
               Conread position:236-672
               
               
               Cow position:chr8:24867532-24867969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 13

               
               
               Conread position:236-673
               
               
               Cow position:chr8:10942527-10942959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:285
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):103, 190

               
               
               Conread position:236-673
               
               
               Cow position:chr8:34259368-34258925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:300
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):71, 11

               
               
               Conread position:236-673
               
               
               Cow position:chr8:37215644-37215214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:296
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):181, 114

               
               
               Conread position:236-673
               
               
               Cow position:chr8:38572052-38572504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 94

               
               
               Conread position:236-673
               
               
               Cow position:chr8:39592806-39592361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 17

               
               
               Conread position:236-673
               
               
               Cow position:chr8:47135806-47136235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 49

               
               
               Conread position:236-674
               
               
               Cow position:chr8:47170163-47169729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 27

               
               
               Conread position:237-422
               
               
               Cow position:chr8:690065-690251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):18, 90

               
               
               Conread position:237-442
               
               
               Cow position:chr8:47057449-47057657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):94, 15

               
               
               Conread position:237-467
               
               
               Cow position:chr8:5477639-5477867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):175, 87

               
               
               Conread position:237-480
               
               
               Cow position:chr8:25554613-25554859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):88, 10

               
               
               Conread position:237-521
               
               
               Cow position:chr8:32130443-32130164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:203
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):181, 11

               
               
               Conread position:237-563
               
               
               Cow position:chr8:54177498-54177831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:237
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):73, 49

               
               
               Conread position:237-579
               
               
               Cow position:chr8:25388369-25388008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 215

               
               
               Conread position:237-599
               
               
               Cow position:chr8:15187464-15187100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):112, 15

               
               
               Conread position:237-673
               
               
               Cow position:chr8:10336828-10337252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 83

               
               
               Conread position:237-673
               
               
               Cow position:chr8:38861505-38861919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 12

               
               
               Conread position:237-673
               
               
               Cow position:chr8:42762219-42762651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:237-674
               
               
               Cow position:chr8:37167960-37167526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:299
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):100, 73

               
               
               Conread position:237-675
               
               
               Cow position:chr8:59131183-59131626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:294
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):33, 130

               
               
               Conread position:238-405
               
               
               Cow position:chr8:5385469-5385636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):88, 15

               
               
               Conread position:238-411
               
               
               Cow position:chr8:30868515-30868691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:238-422
               
               
               Cow position:chr8:10832215-10832404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:238-422
               
               
               Cow position:chr8:26881614-26881797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):91, 15

               
               
               Conread position:238-422
               
               
               Cow position:chr8:42378683-42378868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):87, 11

               
               
               Conread position:238-432
               
               
               Cow position:chr8:37148526-37148326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):80, 14

               
               
               Conread position:238-434
               
               
               Cow position:chr8:5665475-5665679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):85, 14

               
               
               Conread position:238-461
               
               
               Cow position:chr8:35497472-35497691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):169, 82

               
               
               Conread position:238-462
               
               
               Cow position:chr8:11124353-11124574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:238-466
               
               
               Cow position:chr8:57470709-57470482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):63, 15

               
               
               Conread position:238-467
               
               
               Cow position:chr8:43104071-43104311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):77, 11

               
               
               Conread position:238-469
               
               
               Cow position:chr8:52870394-52870163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):102, 14

               
               
               Conread position:238-494
               
               
               Cow position:chr8:24870593-24870854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):80, 14

               
               
               Conread position:238-505
               
               
               Cow position:chr8:20105658-20105925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):88, 14

               
               
               Conread position:238-506
               
               
               Cow position:chr8:55089642-55089908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):6, 36

               
               
               Conread position:238-526
               
               
               Cow position:chr8:45860024-45859732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):77, 17

               
               
               Conread position:238-528
               
               
               Cow position:chr8:39487425-39487715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):74, 11

               
               
               Conread position:238-535
               
               
               Cow position:chr8:47413137-47412835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):49, 11

               
               
               Conread position:238-545
               
               
               Cow position:chr8:34785787-34785495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):121, 14

               
               
               Conread position:238-553
               
               
               Cow position:chr8:55900810-55901130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 177

               
               
               Conread position:238-600
               
               
               Cow position:chr8:27731253-27730887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 15

               
               
               Conread position:238-609
               
               
               Cow position:chr8:32332257-32332655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 300

               
               
               Conread position:238-616
               
               
               Cow position:chr8:1804840-1804457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:260
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):97, 35

               
               
               Conread position:238-645
               
               
               Cow position:chr8:28378552-28378980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:291
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):93, 16

               
               
               Conread position:238-648
               
               
               Cow position:chr8:18870097-18869689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:279
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):90, 14

               
               
               Conread position:238-667
               
               
               Cow position:chr8:2897387-2897839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 135

               
               
               Conread position:238-673
               
               
               Cow position:chr8:6816461-6816898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 15

               
               
               Conread position:238-673
               
               
               Cow position:chr8:8667972-8668422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 14

               
               
               Conread position:238-673
               
               
               Cow position:chr8:18017734-18017288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 14

               
               
               Conread position:238-673
               
               
               Cow position:chr8:19642680-19642246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 14

               
               
               Conread position:238-673
               
               
               Cow position:chr8:28322187-28321751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:297
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):88, 116

               
               
               Conread position:238-673
               
               
               Cow position:chr8:37571490-37571931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 14

               
               
               Conread position:238-673
               
               
               Cow position:chr8:45687463-45687894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:313
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):91, 111

               
               
               Conread position:238-674
               
               
               Cow position:chr8:53606305-53606753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 14

               
               
               Conread position:238-675
               
               
               Cow position:chr8:1297723-1297290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 15

               
               
               Conread position:238-675
               
               
               Cow position:chr8:16938267-16938676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:306
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):176, 82

               
               
               Conread position:238-675
               
               
               Cow position:chr8:27662072-27661635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 86

               
               
               Conread position:238-678
               
               
               Cow position:chr8:3976445-3975990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:306
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):78, 114

               
               
               Conread position:239-413
               
               
               Cow position:chr8:48182717-48182541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):81, 100

               
               
               Conread position:239-422
               
               
               Cow position:chr8:49543095-49542911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):13, 45

               
               
               Conread position:239-427
               
               
               Cow position:chr8:3057056-3056865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):80, 98

               
               
               Conread position:239-427
               
               
               Cow position:chr8:8112952-8112762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):78, 19

               
               
               Conread position:239-427
               
               
               Cow position:chr8:24419074-24419252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:239-430
               
               
               Cow position:chr8:61848514-61848708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):175, 0

               
               
               Conread position:239-453
               
               
               Cow position:chr8:39352664-39352878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):87, 146

               
               
               Conread position:239-457
               
               
               Cow position:chr8:24406429-24406648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):81, 90

               
               
               Conread position:239-469
               
               
               Cow position:chr8:20327639-20327869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):87, 127

               
               
               Conread position:239-471
               
               
               Cow position:chr8:20582472-20582709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):87, 199

               
               
               Conread position:239-495
               
               
               Cow position:chr8:37559337-37559084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):179, 68

               
               
               Conread position:239-509
               
               
               Cow position:chr8:61845336-61845617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):89, 66

               
               
               Conread position:239-510
               
               
               Cow position:chr8:21600666-21600386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:205
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):68, 203

               
               
               Conread position:239-520
               
               
               Cow position:chr8:6616567-6616863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:217
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):77, 130

               
               
               Conread position:239-528
               
               
               Cow position:chr8:4992763-4992481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:217
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):89, 145

               
               
               Conread position:239-540
               
               
               Cow position:chr8:4203638-4203945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):99, 124

               
               
               Conread position:239-565
               
               
               Cow position:chr8:19204230-19204565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):87, 199

               
               
               Conread position:239-596
               
               
               Cow position:chr8:29149649-29150023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):87, 46

               
               
               Conread position:239-629
               
               
               Cow position:chr8:5894139-5893763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 10

               
               
               Conread position:239-643
               
               
               Cow position:chr8:29029079-29029481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:286
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):100, 95

               
               
               Conread position:239-669
               
               
               Cow position:chr8:42145553-42145994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 46

               
               
               Conread position:239-670
               
               
               Cow position:chr8:17199217-17199659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 114

               
               
               Conread position:239-672
               
               
               Cow position:chr8:12058937-12058489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:239-672
               
               
               Cow position:chr8:21826528-21826973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 85

               
               
               Conread position:239-673
               
               
               Cow position:chr8:6232686-6233122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 13

               
               
               Conread position:239-673
               
               
               Cow position:chr8:20783050-20783504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 14

               
               
               Conread position:239-673
               
               
               Cow position:chr8:20926413-20926861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 298

               
               
               Conread position:239-673
               
               
               Cow position:chr8:38358632-38358201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 124

               
               
               Conread position:239-675
               
               
               Cow position:chr8:21220368-21219924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:285
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):96, 203

               
               
               Conread position:239-675
               
               
               Cow position:chr8:39066442-39065985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 124

               
               
               Conread position:239-675
               
               
               Cow position:chr8:46964951-46964489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 295

               
               
               Conread position:239-687
               
               
               Cow position:chr8:54032087-54031639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 37

               
               
               Conread position:240-387
               
               
               Cow position:chr8:16053902-16053758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:240-395
               
               
               Cow position:chr8:41466209-41466370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:240-408
               
               
               Cow position:chr8:54391094-54391253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):101, 68

               
               
               Conread position:240-419
               
               
               Cow position:chr8:19010611-19010804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:240-421
               
               
               Cow position:chr8:13922851-13922670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):60, 54

               
               
               Conread position:240-422
               
               
               Cow position:chr8:56249972-56249791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):175, 86

               
               
               Conread position:240-424
               
               
               Cow position:chr8:27033980-27033800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:240-425
               
               
               Cow position:chr8:39556343-39556160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):76, 92

               
               
               Conread position:240-430
               
               
               Cow position:chr8:29173419-29173228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):98, 33

               
               
               Conread position:240-450
               
               
               Cow position:chr8:38811514-38811303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):10, 37

               
               
               Conread position:240-452
               
               
               Cow position:chr8:24905690-24905464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):83, 208

               
               
               Conread position:240-462
               
               
               Cow position:chr8:19616518-19616304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):8, 28

               
               
               Conread position:240-466
               
               
               Cow position:chr8:20910864-20911093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):80, 35

               
               
               Conread position:240-468
               
               
               Cow position:chr8:32192890-32192672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):37, 68

               
               
               Conread position:240-468
               
               
               Cow position:chr8:53492539-53492315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):175, 86

               
               
               Conread position:240-472
               
               
               Cow position:chr8:38860781-38860539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):76, 13

               
               
               Conread position:240-477
               
               
               Cow position:chr8:9655784-9655550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):92, 9

               
               
               Conread position:240-477
               
               
               Cow position:chr8:37275969-37275730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):49, 64

               
               
               Conread position:240-477
               
               
               Cow position:chr8:54062109-54061870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):81, 71

               
               
               Conread position:240-477
               
               
               Cow position:chr8:60339716-60339946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):178, 46

               
               
               Conread position:240-478
               
               
               Cow position:chr8:31265699-31265936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:177
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):224, 93

               
               
               Conread position:240-492
               
               
               Cow position:chr8:11864163-11863908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):98, 112

               
               
               Conread position:240-494
               
               
               Cow position:chr8:1526529-1526779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):147, 79

               
               
               Conread position:240-505
               
               
               Cow position:chr8:5437973-5437705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):172, 73

               
               
               Conread position:240-506
               
               
               Cow position:chr8:18170789-18171075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):67, 9

               
               
               Conread position:240-514
               
               
               Cow position:chr8:2968791-2968528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):86, 156

               
               
               Conread position:240-516
               
               
               Cow position:chr8:61443007-61443283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):98, 45

               
               
               Conread position:240-517
               
               
               Cow position:chr8:26315293-26315563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):174, 9

               
               
               Conread position:240-535
               
               
               Cow position:chr8:46082377-46082081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 88

               
               
               Conread position:240-539
               
               
               Cow position:chr8:6661193-6661500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):10, 109

               
               
               Conread position:240-540
               
               
               Cow position:chr8:21911855-21911547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 202

               
               
               Conread position:240-545
               
               
               Cow position:chr8:50736046-50735724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):7, 99

               
               
               Conread position:240-555
               
               
               Cow position:chr8:572950-573259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):175, 81

               
               
               Conread position:240-558
               
               
               Cow position:chr8:6224230-6224548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 33

               
               
               Conread position:240-566
               
               
               Cow position:chr8:9402140-9401802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):10, 46

               
               
               Conread position:240-569
               
               
               Cow position:chr8:31985470-31985143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):148, 25

               
               
               Conread position:240-570
               
               
               Cow position:chr8:19698852-19698524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):69, 34

               
               
               Conread position:240-574
               
               
               Cow position:chr8:33640576-33640234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:241
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):10, 28

               
               
               Conread position:240-574
               
               
               Cow position:chr8:51209004-51208648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):61, 328

               
               
               Conread position:240-586
               
               
               Cow position:chr8:46743103-46743447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 180

               
               
               Conread position:240-594
               
               
               Cow position:chr8:39807812-39807445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 196

               
               
               Conread position:240-604
               
               
               Cow position:chr8:37347237-37347615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 36

               
               
               Conread position:240-608
               
               
               Cow position:chr8:35563561-35563167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:276
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):37, 209

               
               
               Conread position:240-610
               
               
               Cow position:chr8:32133476-32133109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 70

               
               
               Conread position:240-630
               
               
               Cow position:chr8:43439818-43439425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 34

               
               
               Conread position:240-638
               
               
               Cow position:chr8:50314968-50315355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 120

               
               
               Conread position:240-663
               
               
               Cow position:chr8:4796958-4796569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:287
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):174, 34

               
               
               Conread position:240-663
               
               
               Cow position:chr8:18730670-18730222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 190

               
               
               Conread position:240-670
               
               
               Cow position:chr8:22274075-22273635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 157

               
               
               Conread position:240-670
               
               
               Cow position:chr8:58636943-58636548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:293
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):178, 70

               
               
               Conread position:240-672
               
               
               Cow position:chr8:25455599-25455181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 46

               
               
               Conread position:240-672
               
               
               Cow position:chr8:61537637-61538067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 85

               
               
               Conread position:240-673
               
               
               Cow position:chr8:2866123-2865683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:296
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):8, 199

               
               
               Conread position:240-673
               
               
               Cow position:chr8:28229264-28229696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 29

               
               
               Conread position:240-673
               
               
               Cow position:chr8:29958610-29958203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:306
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):44, 16

               
               
               Conread position:240-673
               
               
               Cow position:chr8:32854623-32855026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:298
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):178, 83

               
               
               Conread position:240-673
               
               
               Cow position:chr8:45879239-45878820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 31

               
               
               Conread position:240-673
               
               
               Cow position:chr8:45925821-45925402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 31

               
               
               Conread position:240-673
               
               
               Cow position:chr8:60455389-60454971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 44

               
               
               Conread position:240-674
               
               
               Cow position:chr8:1169092-1169494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:294
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):229, 33

               
               
               Conread position:240-674
               
               
               Cow position:chr8:3445885-3446309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 84

               
               
               Conread position:240-674
               
               
               Cow position:chr8:35827591-35828031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 13

               
               
               Conread position:240-674
               
               
               Cow position:chr8:53230223-53229808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:293
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):263, 15

               
               
               Conread position:240-674
               
               
               Cow position:chr8:57219004-57218586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:292
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):244, 45

               
               
               Conread position:240-675
               
               
               Cow position:chr8:47342950-47342508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 13

               
               
               Conread position:240-675
               
               
               Cow position:chr8:61157019-61157449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 94

               
               
               Conread position:240-677
               
               
               Cow position:chr8:24328635-24329075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 36

               
               
               Conread position:240-686
               
               
               Cow position:chr8:1304118-1303668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 162

               
               
               Conread position:240-689
               
               
               Cow position:chr8:11277893-11278355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 33

               
               
               Conread position:241-417
               
               
               Cow position:chr8:31767826-31767999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):9, 84

               
               
               Conread position:241-422
               
               
               Cow position:chr8:47679716-47679541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):177, 78

               
               
               Conread position:241-452
               
               
               Cow position:chr8:1177677-1177883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):177, 8

               
               
               Conread position:241-460
               
               
               Cow position:chr8:19785069-19784852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:171
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 0

               
               
               Conread position:241-463
               
               
               Cow position:chr8:34035883-34035658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):100, 12

               
               
               Conread position:241-468
               
               
               Cow position:chr8:53927807-53928034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):88, 8

               
               
               Conread position:241-494
               
               
               Cow position:chr8:38852304-38852039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:241-520
               
               
               Cow position:chr8:51524218-51523940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):85, 112

               
               
               Conread position:241-539
               
               
               Cow position:chr8:52197244-52197549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):6, 130

               
               
               Conread position:241-577
               
               
               Cow position:chr8:37334384-37334040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):43, 95

               
               
               Conread position:241-602
               
               
               Cow position:chr8:38711798-38711443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):237, 69

               
               
               Conread position:241-604
               
               
               Cow position:chr8:40280898-40280529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 171

               
               
               Conread position:241-614
               
               
               Cow position:chr8:41905409-41905782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:276
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):68, 125

               
               
               Conread position:241-614
               
               
               Cow position:chr8:41914317-41914690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:275
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):68, 129

               
               
               Conread position:241-633
               
               
               Cow position:chr8:4500699-4500303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 66

               
               
               Conread position:241-670
               
               
               Cow position:chr8:948739-948321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 56

               
               
               Conread position:241-672
               
               
               Cow position:chr8:55716963-55716532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 46

               
               
               Conread position:241-673
               
               
               Cow position:chr8:32620769-32621221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 8

               
               
               Conread position:241-674
               
               
               Cow position:chr8:35972059-35971619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 8

               
               
               Conread position:241-674
               
               
               Cow position:chr8:37298689-37298253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 109

               
               
               Conread position:241-689
               
               
               Cow position:chr8:9681215-9681646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:310
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):174, 64

               
               
               Conread position:242-412
               
               
               Cow position:chr8:39898896-39898737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:242-417
               
               
               Cow position:chr8:39968070-39968246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):5, 168

               
               
               Conread position:242-427
               
               
               Cow position:chr8:20897559-20897370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:242-428
               
               
               Cow position:chr8:50682312-50682124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):82, 18

               
               
               Conread position:242-431
               
               
               Cow position:chr8:5484360-5484555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:242-433
               
               
               Cow position:chr8:8772864-8773062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):78, 39

               
               
               Conread position:242-433
               
               
               Cow position:chr8:53964259-53964441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):173, 23

               
               
               Conread position:242-441
               
               
               Cow position:chr8:8714999-8714803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):172, 55

               
               
               Conread position:242-468
               
               
               Cow position:chr8:3887541-3887314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):56, 13

               
               
               Conread position:242-468
               
               
               Cow position:chr8:47410293-47410064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):6, 92

               
               
               Conread position:242-474
               
               
               Cow position:chr8:38639445-38639213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):171, 75

               
               
               Conread position:242-482
               
               
               Cow position:chr8:21069754-21070007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):65, 191

               
               
               Conread position:242-484
               
               
               Cow position:chr8:5467873-5468125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):78, 200

               
               
               Conread position:242-518
               
               
               Cow position:chr8:18728993-18728716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:206
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):172, 67

               
               
               Conread position:242-552
               
               
               Cow position:chr8:27954942-27955258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 92

               
               
               Conread position:242-568
               
               
               Cow position:chr8:15922052-15922390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):11, 19

               
               
               Conread position:242-594
               
               
               Cow position:chr8:55885182-55884823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 92

               
               
               Conread position:242-598
               
               
               Cow position:chr8:58058951-58058586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 29

               
               
               Conread position:242-671
               
               
               Cow position:chr8:8986719-8987162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:307
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):69, 257

               
               
               Conread position:242-671
               
               
               Cow position:chr8:53383605-53383182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 27

               
               
               Conread position:242-672
               
               
               Cow position:chr8:20033708-20034135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 10

               
               
               Conread position:242-673
               
               
               Cow position:chr8:24371503-24371940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 99

               
               
               Conread position:242-673
               
               
               Cow position:chr8:52925522-52925942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:289
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):175, 49

               
               
               Conread position:242-674
               
               
               Cow position:chr8:23179321-23179772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 185

               
               
               Conread position:242-675
               
               
               Cow position:chr8:12796035-12795589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 93

               
               
               Conread position:242-675
               
               
               Cow position:chr8:48527754-48528178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 34

               
               
               Conread position:243-412
               
               
               Cow position:chr8:5877847-5877683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:243-417
               
               
               Cow position:chr8:36034756-36034933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:243-505
               
               
               Cow position:chr8:58393767-58393505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:199
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):171, 43

               
               
               Conread position:243-521
               
               
               Cow position:chr8:26284645-26284927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):96, 54

               
               
               Conread position:243-591
               
               
               Cow position:chr8:16061282-16060942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 168

               
               
               Conread position:244-630
               
               
               Cow position:chr8:47283859-47284245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 146

               
               
               Conread position:245-431
               
               
               Cow position:chr8:6675401-6675215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):161, 169

               
               
               Conread position:245-463
               
               
               Cow position:chr8:3290611-3290820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:245-506
               
               
               Cow position:chr8:6248679-6248934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):165, 24

               
               
               Conread position:245-515
               
               
               Cow position:chr8:834620-834351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):169, 52

               
               
               Conread position:245-519
               
               
               Cow position:chr8:37709341-37709080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):170, 28

               
               
               Conread position:245-585
               
               
               Cow position:chr8:21858503-21858845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:254
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):62, 182

               
               
               Conread position:245-673
               
               
               Cow position:chr8:36375315-36375736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 75

               
               
               Conread position:245-674
               
               
               Cow position:chr8:19995524-19995956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 192

               
               
               Conread position:246-522
               
               
               Cow position:chr8:8915749-8916028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):77, 121

               
               
               Conread position:246-539
               
               
               Cow position:chr8:46874756-46874464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:205
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):232, 77

               
               
               Conread position:246-540
               
               
               Cow position:chr8:52657365-52657082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):178, 78

               
               
               Conread position:246-592
               
               
               Cow position:chr8:935912-935560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 90

               
               
               Conread position:246-634
               
               
               Cow position:chr8:61128495-61128891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 67

               
               
               Conread position:246-676
               
               
               Cow position:chr8:16144339-16143897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 181

               
               
               Conread position:249-407
               
               
               Cow position:chr8:36385357-36385514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:249-432
               
               
               Cow position:chr8:61739474-61739653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):156, 64

               
               
               Conread position:249-506
               
               
               Cow position:chr8:19860472-19860716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):30, 64

               
               
               Conread position:249-506
               
               
               Cow position:chr8:36531396-36531660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):58, 192

               
               
               Conread position:249-590
               
               
               Cow position:chr8:23585758-23586101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):21, 80

               
               
               Conread position:249-662
               
               
               Cow position:chr8:18057932-18057523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 68

               
               
               Conread position:249-670
               
               
               Cow position:chr8:18831949-18831515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 89

               
               
               Conread position:249-673
               
               
               Cow position:chr8:25349905-25349484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 73

               
               
               Conread position:249-675
               
               
               Cow position:chr8:59250927-59250499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 44

               
               
               Conread position:250-425
               
               
               Cow position:chr8:36860668-36860498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:250-530
               
               
               Cow position:chr8:20657178-20657444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):168, 36

               
               
               Conread position:250-637
               
               
               Cow position:chr8:54211052-54210697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:272
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):133, 35

               
               
               Conread position:251-527
               
               
               Cow position:chr8:16505689-16505418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):233, 34

               
               
               Conread position:251-552
               
               
               Cow position:chr8:55096073-55095776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:222
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):80, 139

               
               
               Conread position:251-579
               
               
               Cow position:chr8:15426951-15426619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):75, 104

               
               
               Conread position:251-609
               
               
               Cow position:chr8:54436809-54437178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:250
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):80, 109

               
               
               Conread position:251-615
               
               
               Cow position:chr8:19284702-19284332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 25

               
               
               Conread position:251-669
               
               
               Cow position:chr8:13321432-13321823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:294
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):49, 34

               
               
               Conread position:251-672
               
               
               Cow position:chr8:8097064-8097493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 14

               
               
               Conread position:251-673
               
               
               Cow position:chr8:61567171-61567591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 101

               
               
               Conread position:252-604
               
               
               Cow position:chr8:55897618-55897964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 16

               
               
               Conread position:252-672
               
               
               Cow position:chr8:1188113-1187707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 69

               
               
               Conread position:252-674
               
               
               Cow position:chr8:26626071-26625649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 186

               
               
               Conread position:253-427
               
               
               Cow position:chr8:35816918-35817094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):75, 87

               
               
               Conread position:253-431
               
               
               Cow position:chr8:3423205-3423023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:253-630
               
               
               Cow position:chr8:19979888-19980261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 33

               
               
               Conread position:253-673
               
               
               Cow position:chr8:30324516-30324103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 51

               
               
               Conread position:253-675
               
               
               Cow position:chr8:9641557-9641127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:284
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):65, 141

               
               
               Conread position:254-410
               
               
               Cow position:chr8:35936960-35936807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:254-445
               
               
               Cow position:chr8:54197671-54197874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):55, 191

               
               
               Conread position:254-476
               
               
               Cow position:chr8:676114-676342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:254-519
               
               
               Cow position:chr8:41219527-41219257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):75, 182

               
               
               Conread position:254-521
               
               
               Cow position:chr8:20320684-20320420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):38, 19

               
               
               Conread position:254-535
               
               
               Cow position:chr8:37119640-37119933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):60, 84

               
               
               Conread position:254-614
               
               
               Cow position:chr8:57406966-57406596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 184

               
               
               Conread position:254-673
               
               
               Cow position:chr8:3015679-3015247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 385

               
               
               Conread position:254-673
               
               
               Cow position:chr8:26651485-26651081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:298
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):163, 32

               
               
               Conread position:254-673
               
               
               Cow position:chr8:50310654-50311072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 31

               
               
               Conread position:254-675
               
               
               Cow position:chr8:2163723-2164133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):230, 66

               
               
               Conread position:257-412
               
               
               Cow position:chr8:3793348-3793192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):68, 79

               
               
               Conread position:257-468
               
               
               Cow position:chr8:32327108-32326909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:257-470
               
               
               Cow position:chr8:34059967-34060182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):157, 177

               
               
               Conread position:257-473
               
               
               Cow position:chr8:53965275-53965500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):50, 174

               
               
               Conread position:257-492
               
               
               Cow position:chr8:22575695-22575933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):32, 27

               
               
               Conread position:257-578
               
               
               Cow position:chr8:59766789-59766467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):239, 71

               
               
               Conread position:257-671
               
               
               Cow position:chr8:1999827-1999399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 181

               
               
               Conread position:257-672
               
               
               Cow position:chr8:53429961-53429550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:302
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):92, 53

               
               
               Conread position:257-673
               
               
               Cow position:chr8:15394663-15395079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 94

               
               
               Conread position:257-673
               
               
               Cow position:chr8:18081723-18081312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 53

               
               
               Conread position:257-675
               
               
               Cow position:chr8:17179846-17180252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 16

               
               
               Conread position:258-422
               
               
               Cow position:chr8:8283103-8283271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:258-565
               
               
               Cow position:chr8:54147863-54147544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):18, 79

               
               
               Conread position:258-591
               
               
               Cow position:chr8:6073626-6073961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 65

               
               
               Conread position:259-539
               
               
               Cow position:chr8:36768671-36768384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):81, 268

               
               
               Conread position:259-673
               
               
               Cow position:chr8:60488446-60488850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):247, 27

               
               
               Conread position:260-673
               
               
               Cow position:chr8:13661219-13660810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 13

               
               
               Conread position:260-687
               
               
               Cow position:chr8:21212978-21212576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:286
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):115, 59

               
               
               Conread position:261-511
               
               
               Cow position:chr8:32278154-32278412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):57, 72

               
               
               Conread position:261-610
               
               
               Cow position:chr8:60127037-60126687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:240
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):157, 63

               
               
               Conread position:261-670
               
               
               Cow position:chr8:15390977-15391376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 47

               
               
               Conread position:262-673
               
               
               Cow position:chr8:24471850-24471423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 74

               
               
               Conread position:264-672
               
               
               Cow position:chr8:1107006-1107415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:269
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):155, 29

               
               
               Conread position:264-689
               
               
               Cow position:chr8:59056109-59056540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:280
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):62, 90

               
               
               Conread position:265-477
               
               
               Cow position:chr8:39590425-39590208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):7, 163

               
               
               Conread position:265-666
               
               
               Cow position:chr8:59642305-59642718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:281
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):70, 98

               
               
               Conread position:265-675
               
               
               Cow position:chr8:36249231-36249647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 352

               
               
               Conread position:267-675
               
               
               Cow position:chr8:29765453-29765029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 166

               
               
               Conread position:270-673
               
               
               Cow position:chr8:10400479-10400083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:282
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):56, 16

               
               
               Conread position:270-673
               
               
               Cow position:chr8:58183123-58183533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 54

               
               
               Conread position:271-662
               
               
               Cow position:chr8:35580455-35580847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 62

               
               
               Conread position:272-675
               
               
               Cow position:chr8:24871701-24872094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 13

               
               
               Conread position:273-673
               
               
               Cow position:chr8:9461020-9461429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:270
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):110, 46

               
               
               Conread position:275-535
               
               
               Cow position:chr8:9652844-9652590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):216, 49

               
               
               Conread position:277-466
               
               
               Cow position:chr8:36490044-36489853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):11, 33

               
               
               Conread position:278-690
               
               
               Cow position:chr8:38780876-38780468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 9

               
               
               Conread position:279-480
               
               
               Cow position:chr8:55853503-55853306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):156, 37

               
               
               Conread position:279-519
               
               
               Cow position:chr8:40697052-40696807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):40, 139

               
               
               Conread position:280-596
               
               
               Cow position:chr8:53338491-53338811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:230
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):35, 55

               
               
               Conread position:286-466
               
               
               Cow position:chr8:9468506-9468330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):23, 48

               
               
               Conread position:286-650
               
               
               Cow position:chr8:57208309-57208681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 81

               
               
               Conread position:291-673
               
               
               Cow position:chr8:40032659-40033041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 46

               
               
               Conread position:292-579
               
               
               Cow position:chr8:45446942-45447236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):126, 41

               
               
               Conread position:292-692
               
               
               Cow position:chr8:20307138-20306739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 62

               
               
               Conread position:294-531
               
               
               Cow position:chr8:36672077-36671833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):35, 148

               
               
               Conread position:296-672
               
               
               Cow position:chr8:11606480-11606111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 40

               
               
               Conread position:298-469
               
               
               Cow position:chr8:37855527-37855355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):14, 136

               
               
               Conread position:298-684
               
               
               Cow position:chr8:33586366-33585976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 36

               
               
               Conread position:299-673
               
               
               Cow position:chr8:20339426-20339061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 12

               
               
               Conread position:300-509
               
               
               Cow position:chr8:25751723-25751932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):11, 18

               
               
               Conread position:301-671
               
               
               Cow position:chr8:58417838-58417467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:268
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):17, 111

               
               
               Conread position:301-673
               
               
               Cow position:chr8:11079013-11078646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:264
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):17, 74

               
               
               Conread position:305-584
               
               
               Cow position:chr8:29026495-29026775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 27

               
               
               Conread position:305-617
               
               
               Cow position:chr8:43479182-43478870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):6, 30

               
               
               Conread position:305-670
               
               
               Cow position:chr8:1394379-1394005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 5

               
               
               Conread position:305-670
               
               
               Cow position:chr8:21077730-21077373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 98

               
               
               Conread position:306-534
               
               
               Cow position:chr8:14383042-14383274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):69, 140

               
               
               Conread position:307-598
               
               
               Cow position:chr8:4648742-4649043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:214
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):110, 26

               
               
               Conread position:307-652
               
               
               Cow position:chr8:6484789-6485139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 17

               
               
               Conread position:308-482
               
               
               Cow position:chr8:47248732-47248551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):110, 25

               
               
               Conread position:308-506
               
               
               Cow position:chr8:47500949-47500744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):110, 127

               
               
               Conread position:308-591
               
               
               Cow position:chr8:5867208-5866927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):111, 25

               
               
               Conread position:308-605
               
               
               Cow position:chr8:45287156-45287443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:216
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):106, 25

               
               
               Conread position:308-673
               
               
               Cow position:chr8:48956085-48955692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:283
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):103, 19

               
               
               Conread position:310-466
               
               
               Cow position:chr8:31762677-31762524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:310-470
               
               
               Cow position:chr8:43153549-43153710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):102, 23

               
               
               Conread position:310-479
               
               
               Cow position:chr8:44847753-44847583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):103, 23

               
               
               Conread position:310-516
               
               
               Cow position:chr8:34774637-34774431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):118, 26

               
               
               Conread position:310-520
               
               
               Cow position:chr8:45126091-45126312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):13, 27

               
               
               Conread position:310-535
               
               
               Cow position:chr8:17167711-17167480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:186
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):104, 23

               
               
               Conread position:310-538
               
               
               Cow position:chr8:17232218-17232452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):16, 122

               
               
               Conread position:310-539
               
               
               Cow position:chr8:55871554-55871792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):79, 39

               
               
               Conread position:310-571
               
               
               Cow position:chr8:3673508-3673250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):164, 23

               
               
               Conread position:310-586
               
               
               Cow position:chr8:50784876-50784584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):35, 48

               
               
               Conread position:310-597
               
               
               Cow position:chr8:53948286-53948568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):11, 28

               
               
               Conread position:310-625
               
               
               Cow position:chr8:39174101-39174426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 23

               
               
               Conread position:310-630
               
               
               Cow position:chr8:28987840-28987523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 24

               
               
               Conread position:310-670
               
               
               Cow position:chr8:15569340-15569681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 126

               
               
               Conread position:310-670
               
               
               Cow position:chr8:20157619-20157982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 23

               
               
               Conread position:310-674
               
               
               Cow position:chr8:50937920-50937557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:254
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):12, 25

               
               
               Conread position:310-675
               
               
               Cow position:chr8:38682019-38681652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 23

               
               
               Conread position:311-491
               
               
               Cow position:chr8:36718703-36718523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):20, 34

               
               
               Conread position:311-552
               
               
               Cow position:chr8:56507171-56507390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):216, 22

               
               
               Conread position:311-605
               
               
               Cow position:chr8:37882485-37882186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 22

               
               
               Conread position:311-616
               
               
               Cow position:chr8:2931561-2931866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):107, 22

               
               
               Conread position:311-629
               
               
               Cow position:chr8:3922576-3922911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:234
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):108, 22

               
               
               Conread position:311-672
               
               
               Cow position:chr8:7149561-7149909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 22

               
               
               Conread position:311-673
               
               
               Cow position:chr8:579941-580303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:251
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):101, 22

               
               
               Conread position:311-673
               
               
               Cow position:chr8:38894153-38893785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 123

               
               
               Conread position:312-494
               
               
               Cow position:chr8:54328595-54328400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):14, 112

               
               
               Conread position:313-484
               
               
               Cow position:chr8:33805661-33805493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):102, 20

               
               
               Conread position:313-543
               
               
               Cow position:chr8:49656293-49656519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):105, 20

               
               
               Conread position:313-552
               
               
               Cow position:chr8:22183854-22183610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):81, 20

               
               
               Conread position:313-639
               
               
               Cow position:chr8:28313582-28313915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 122

               
               
               Conread position:313-671
               
               
               Cow position:chr8:39144874-39144540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:259
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):20, 25

               
               
               Conread position:313-673
               
               
               Cow position:chr8:47461997-47461640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 20

               
               
               Conread position:314-534
               
               
               Cow position:chr8:49659266-49659046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):12, 33

               
               
               Conread position:314-598
               
               
               Cow position:chr8:53633086-53633384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):101, 35

               
               
               Conread position:314-663
               
               
               Cow position:chr8:6531552-6531203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 20

               
               
               Conread position:315-440
               
               
               Cow position:chr8:5546274-5546148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):101, 18

               
               
               Conread position:315-536
               
               
               Cow position:chr8:25133711-25133488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):23, 123

               
               
               Conread position:315-605
               
               
               Cow position:chr8:32094009-32093717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:211
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):212, 19

               
               
               Conread position:315-626
               
               
               Cow position:chr8:8577965-8577656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:221
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):103, 19

               
               
               Conread position:315-671
               
               
               Cow position:chr8:60463643-60463294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 18

               
               
               Conread position:316-539
               
               
               Cow position:chr8:40579278-40579502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):99, 168

               
               
               Conread position:316-540
               
               
               Cow position:chr8:43163567-43163796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):34, 17

               
               
               Conread position:317-649
               
               
               Cow position:chr8:1012111-1011776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 15

               
               
               Conread position:317-670
               
               
               Cow position:chr8:25591950-25591597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 40

               
               
               Conread position:317-672
               
               
               Cow position:chr8:28884971-28884603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 16

               
               
               Conread position:317-673
               
               
               Cow position:chr8:45781539-45781885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:252
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):168, 19

               
               
               Conread position:318-467
               
               
               Cow position:chr8:24428672-24428824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):102, 15

               
               
               Conread position:318-689
               
               
               Cow position:chr8:35991187-35990805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 120

               
               
               Conread position:320-460
               
               
               Cow position:chr8:5884560-5884701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):98, 13

               
               
               Conread position:320-667
               
               
               Cow position:chr8:1473191-1472844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:260
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):9, 39

               
               
               Conread position:320-670
               
               
               Cow position:chr8:642446-642778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 13

               
               
               Conread position:320-670
               
               
               Cow position:chr8:45127572-45127922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 14

               
               
               Conread position:320-673
               
               
               Cow position:chr8:6076420-6076765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 62

               
               
               Conread position:320-673
               
               
               Cow position:chr8:33432390-33432034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 13

               
               
               Conread position:320-674
               
               
               Cow position:chr8:4940188-4940535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 14

               
               
               Conread position:321-471
               
               
               Cow position:chr8:32198011-32198161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):67, 13

               
               
               Conread position:322-556
               
               
               Cow position:chr8:13723535-13723298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):102, 11

               
               
               Conread position:322-673
               
               
               Cow position:chr8:24390067-24390423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 12

               
               
               Conread position:322-675
               
               
               Cow position:chr8:47664777-47665133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 11

               
               
               Conread position:323-586
               
               
               Cow position:chr8:12799047-12798791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):95, 10

               
               
               Conread position:325-673
               
               
               Cow position:chr8:18207017-18207371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 9

               
               
               Conread position:325-673
               
               
               Cow position:chr8:21222318-21221979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:249
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):93, 31

               
               
               Conread position:325-673
               
               
               Cow position:chr8:29624841-29625186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 105

               
               
               Conread position:325-673
               
               
               Cow position:chr8:53558482-53558827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 91

               
               
               Conread position:327-469
               
               
               Cow position:chr8:10846364-10846220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):88, 108

               
               
               Conread position:327-640
               
               
               Cow position:chr8:30463523-30463201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):79, 295

               
               
               Conread position:327-673
               
               
               Cow position:chr8:4924692-4924340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 107

               
               
               Conread position:327-673
               
               
               Cow position:chr8:9130803-9131151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:247
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):98, 92

               
               
               Conread position:327-673
               
               
               Cow position:chr8:45244904-45245242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:250
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):9, 99

               
               
               Conread position:328-579
               
               
               Cow position:chr8:40143728-40143988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):87, 107

               
               
               Conread position:328-591
               
               
               Cow position:chr8:20073056-20073331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):86, 107

               
               
               Conread position:328-671
               
               
               Cow position:chr8:43167904-43168246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 172

               
               
               Conread position:328-673
               
               
               Cow position:chr8:44437891-44437544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 44

               
               
               Conread position:329-605
               
               
               Cow position:chr8:58520417-58520130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:208
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):95, 145

               
               
               Conread position:329-673
               
               
               Cow position:chr8:3704745-3704398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 20

               
               
               Conread position:329-673
               
               
               Cow position:chr8:20837242-20836903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 8

               
               
               Conread position:330-473
               
               
               Cow position:chr8:3795946-3795803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):89, 59

               
               
               Conread position:331-670
               
               
               Cow position:chr8:56886431-56886103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:238
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):98, 184

               
               
               Conread position:331-673
               
               
               Cow position:chr8:39630893-39630546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 85

               
               
               Conread position:331-675
               
               
               Cow position:chr8:10263044-10263389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 104

               
               
               Conread position:331-687
               
               
               Cow position:chr8:3339197-3338847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 30

               
               
               Conread position:332-500
               
               
               Cow position:chr8:57067629-57067792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):80, 57

               
               
               Conread position:332-640
               
               
               Cow position:chr8:4552628-4552961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:236
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):83, 92

               
               
               Conread position:333-673
               
               
               Cow position:chr8:21382572-21382919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 257

               
               
               Conread position:333-673
               
               
               Cow position:chr8:40930421-40930114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:233
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):83, 106

               
               
               Conread position:337-476
               
               
               Cow position:chr8:1843018-1843159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):80, 102

               
               
               Conread position:337-553
               
               
               Cow position:chr8:44557925-44558149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):81, 55

               
               
               Conread position:337-594
               
               
               Cow position:chr8:37862686-37862433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):126, 82

               
               
               Conread position:337-595
               
               
               Cow position:chr8:37192479-37192219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:194
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):81, 98

               
               
               Conread position:337-605
               
               
               Cow position:chr8:983847-983578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):80, 98

               
               
               Conread position:337-650
               
               
               Cow position:chr8:33406731-33407049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 99

               
               
               Conread position:337-672
               
               
               Cow position:chr8:29262893-29262560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 102

               
               
               Conread position:337-672
               
               
               Cow position:chr8:53362742-53363074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 101

               
               
               Conread position:337-674
               
               
               Cow position:chr8:45830994-45830661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 52

               
               
               Conread position:338-591
               
               
               Cow position:chr8:51694701-51694960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:191
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):91, 19

               
               
               Conread position:339-674
               
               
               Cow position:chr8:17103315-17103645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 7

               
               
               Conread position:341-673
               
               
               Cow position:chr8:5980053-5979719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 41

               
               
               Conread position:345-673
               
               
               Cow position:chr8:554078-554410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 89

               
               
               Conread position:346-673
               
               
               Cow position:chr8:32988847-32988521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 85

               
               
               Conread position:347-572
               
               
               Cow position:chr8:35210828-35211050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):189, 48

               
               
               Conread position:349-613
               
               
               Cow position:chr8:3760065-3760333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):65, 8

               
               
               Conread position:349-682
               
               
               Cow position:chr8:5224942-5225271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 64

               
               
               Conread position:354-566
               
               
               Cow position:chr8:43228071-43227851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):74, 114

               
               
               Conread position:354-600
               
               
               Cow position:chr8:30892904-30893159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):54, 85

               
               
               Conread position:354-673
               
               
               Cow position:chr8:20684070-20683748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 65

               
               
               Conread position:354-691
               
               
               Cow position:chr8:7064189-7064519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:243
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):69, 65

               
               
               Conread position:358-674
               
               
               Cow position:chr8:9917977-9917666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):57, 107

               
               
               Conread position:367-652
               
               
               Cow position:chr8:45071830-45072120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):62, 228

               
               
               Conread position:367-672
               
               
               Cow position:chr8:18049679-18049379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:215
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):62, 105

               
               
               Conread position:367-673
               
               
               Cow position:chr8:28294762-28295069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 71

               
               
               Conread position:367-675
               
               
               Cow position:chr8:31762736-31763043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):57, 170

               
               
               Conread position:367-675
               
               
               Cow position:chr8:36606363-36606064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):62, 138

               
               
               Conread position:367-675
               
               
               Cow position:chr8:38356772-38357076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):50, 57

               
               
               Conread position:370-673
               
               
               Cow position:chr8:10297655-10297963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 68

               
               
               Conread position:373-604
               
               
               Cow position:chr8:60816055-60816293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):57, 90

               
               
               Conread position:378-675
               
               
               Cow position:chr8:20563690-20563989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):80, 41

               
               
               Conread position:379-640
               
               
               Cow position:chr8:21083218-21083487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):45, 40

               
               
               Conread position:391-671
               
               
               Cow position:chr8:43795287-43795004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):40, 225

               
               
               Conread position:392-617
               
               
               Cow position:chr8:14919344-14919117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):38, 176

               
               
               Conread position:396-674
               
               
               Cow position:chr8:19998028-19998308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):18, 42

               
               
               Conread position:399-596
               
               
               Cow position:chr8:11135214-11135409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):128, 14

               
               
               Conread position:399-674
               
               
               Cow position:chr8:225314-225590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:214
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):18, 39

               
               
               Conread position:399-674
               
               
               Cow position:chr8:45493932-45493655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):20, 40

               
               
               Conread position:399-675
               
               
               Cow position:chr8:31253866-31253584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):25, 13

               
               
               Conread position:401-667
               
               
               Cow position:chr8:45689848-45690119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):15, 37

               
               
               Conread position:401-673
               
               
               Cow position:chr8:9229835-9230113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):17, 36

               
               
               Conread position:403-590
               
               
               Cow position:chr8:5515755-5515567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):66, 12

               
               
               Conread position:403-657
               
               
               Cow position:chr8:59438231-59438492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:196
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):16, 35

               
               
               Conread position:404-553
               
               
               Cow position:chr8:32967836-32967679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):14, 21

               
               
               Conread position:404-673
               
               
               Cow position:chr8:55926244-55925974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 9

               
               
               Conread position:406-671
               
               
               Cow position:chr8:51579311-51579045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):13, 33

               
               
               Conread position:407-674
               
               
               Cow position:chr8:38465041-38464788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:201
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:412-673
               
               
               Cow position:chr8:35555515-35555793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):72, 27

               
               
               Conread position:415-615
               
               
               Cow position:chr8:36741133-36741328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):20, 57

               
               
               Conread position:415-672
               
               
               Cow position:chr8:4205960-4205702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:186
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):63, 129

               
               
               Conread position:416-673
               
               
               Cow position:chr8:28509446-28509716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):7, 110

               
               
               Conread position:417-584
               
               
               Cow position:chr8:51480799-51480969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):68, 19

               
               
               Conread position:417-669
               
               
               Cow position:chr8:36648425-36648681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):68, 19

               
               
               Conread position:417-671
               
               
               Cow position:chr8:21961279-21961025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:195
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):110, 22

               
               
               Conread position:417-672
               
               
               Cow position:chr8:20112146-20111888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):67, 19

               
               
               Conread position:418-673
               
               
               Cow position:chr8:28412582-28412836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):66, 13

               
               
               Conread position:419-673
               
               
               Cow position:chr8:24952378-24952116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:202
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):43, 17

               
               
               Conread position:419-675
               
               
               Cow position:chr8:32295698-32295965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):61, 9

               
               
               Conread position:425-659
               
               
               Cow position:chr8:16053559-16053330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):36, 11

               
               
               Conread position:425-662
               
               
               Cow position:chr8:24363916-24364155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):60, 11

               
               
               Conread position:425-673
               
               
               Cow position:chr8:53964722-53964964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):102, 11

               
               
               Conread position:429-673
               
               
               Cow position:chr8:1834941-1834697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):55, 7

               
               
               Conread position:430-670
               
               
               Cow position:chr8:1327451-1327213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):54, 63

               
               
               Conread position:434-624
               
               
               Cow position:chr8:3655606-3655418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):93, 32

               
               
               Conread position:434-663
               
               
               Cow position:chr8:56824011-56824227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:434-669
               
               
               Cow position:chr8:20384796-20384567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):50, 37

               
               
               Conread position:434-673
               
               
               Cow position:chr8:4563410-4563652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):96, 22

               
               
               Conread position:434-692
               
               
               Cow position:chr8:36465222-36464962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:197
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):93, 85

               
               
               Conread position:436-657
               
               
               Cow position:chr8:37433638-37433413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):32, 8

               
               
               Conread position:436-674
               
               
               Cow position:chr8:5484855-5485106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 88

               
               
               Conread position:439-673
               
               
               Cow position:chr8:56581196-56581422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):29, 91

               
               
               Conread position:439-674
               
               
               Cow position:chr8:51862239-51862026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:440-673
               
               
               Cow position:chr8:2882075-2881838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):41, 147

               
               
               Conread position:440-673
               
               
               Cow position:chr8:39555993-39555753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):41, 90

               
               
               Conread position:476-675
               
               
               Cow position:chr8:49721114-49720909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):51, 43

               
               
               Conread position:477-673
               
               
               Cow position:chr8:10434779-10434584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):50, 10

               
               
               Conread position:482-673
               
               
               Cow position:chr8:45664741-45664550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):48, 37

               
               
               Conread position:485-673
               
               
               Cow position:chr8:54325693-54325508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):58, 116

               
               
               Conread position:161-673
               
               
               Cow position:chr9:5835899-5836426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:540
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 108

               
               
               Conread position:162-552
               
               
               Cow position:chr9:1867192-1867591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:273
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):90, 24

               
               
               Conread position:162-674
               
               
               Cow position:chr9:20942866-20942346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:339
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):164, 21

               
               
               Conread position:205-552
               
               
               Cow position:chr9:34283745-34284094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:258
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):51, 27

               
               
               Conread position:206-673
               
               
               Cow position:chr9:42497621-42498093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 122

               
               
               Conread position:225-673
               
               
               Cow position:chr9:26085869-26086331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 106

               
               
               Conread position:227-422
               
               
               Cow position:chr9:40984319-40984516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:230-675
               
               
               Cow position:chr9:8997375-8997822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:292
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):98, 232

               
               
               Conread position:233-419
               
               
               Cow position:chr9:33101286-33101108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):11, 79

               
               
               Conread position:233-567
               
               
               Cow position:chr9:36843608-36843949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):76, 16

               
               
               Conread position:233-613
               
               
               Cow position:chr9:53139311-53138923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:268
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):93, 11

               
               
               Conread position:234-386
               
               
               Cow position:chr9:53120828-53120967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:234-387
               
               
               Cow position:chr9:16826379-16826220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):61, 19

               
               
               Conread position:234-410
               
               
               Cow position:chr9:8535680-8535865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:234-417
               
               
               Cow position:chr9:34276390-34276205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):92, 18

               
               
               Conread position:234-417
               
               
               Cow position:chr9:54598496-54598678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):94, 18

               
               
               Conread position:234-422
               
               
               Cow position:chr9:40603490-40603679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):92, 20

               
               
               Conread position:234-422
               
               
               Cow position:chr9:61286584-61286773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):94, 18

               
               
               Conread position:234-429
               
               
               Cow position:chr9:19718511-19718320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):180, 15

               
               
               Conread position:234-430
               
               
               Cow position:chr9:12773515-12773711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):9, 95

               
               
               Conread position:234-433
               
               
               Cow position:chr9:5187038-5186843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:234-452
               
               
               Cow position:chr9:11098629-11098414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:173
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):66, 52

               
               
               Conread position:234-467
               
               
               Cow position:chr9:44759104-44758875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):181, 18

               
               
               Conread position:234-467
               
               
               Cow position:chr9:58662064-58662296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):14, 161

               
               
               Conread position:234-469
               
               
               Cow position:chr9:39709676-39709916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):90, 18

               
               
               Conread position:234-474
               
               
               Cow position:chr9:2037256-2037494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):13, 181

               
               
               Conread position:234-482
               
               
               Cow position:chr9:47517020-47517268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):92, 18

               
               
               Conread position:234-490
               
               
               Cow position:chr9:41785042-41785292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:198
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):9, 54

               
               
               Conread position:234-528
               
               
               Cow position:chr9:45728599-45728896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):44, 125

               
               
               Conread position:234-539
               
               
               Cow position:chr9:44396482-44396789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):92, 18

               
               
               Conread position:234-577
               
               
               Cow position:chr9:60395227-60394879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 202

               
               
               Conread position:234-650
               
               
               Cow position:chr9:43757367-43757764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:289
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):184, 15

               
               
               Conread position:234-667
               
               
               Cow position:chr9:55117904-55118336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 190

               
               
               Conread position:234-672
               
               
               Cow position:chr9:34902276-34901852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 74

               
               
               Conread position:234-672
               
               
               Cow position:chr9:45285716-45285268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 16

               
               
               Conread position:234-672
               
               
               Cow position:chr9:56032493-56032065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 12

               
               
               Conread position:234-672
               
               
               Cow position:chr9:58452250-58451834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 85

               
               
               Conread position:234-673
               
               
               Cow position:chr9:7409600-7410046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 18

               
               
               Conread position:234-673
               
               
               Cow position:chr9:8936970-8937412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:293
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):94, 121

               
               
               Conread position:234-673
               
               
               Cow position:chr9:50607109-50606689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 87

               
               
               Conread position:234-673
               
               
               Cow position:chr9:55256727-55256285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 86

               
               
               Conread position:234-674
               
               
               Cow position:chr9:5227339-5226899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 77

               
               
               Conread position:235-421
               
               
               Cow position:chr9:28315248-28315439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):83, 17

               
               
               Conread position:235-461
               
               
               Cow position:chr9:34484414-34484646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):72, 18

               
               
               Conread position:235-473
               
               
               Cow position:chr9:12337723-12337965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:179
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:235-476
               
               
               Cow position:chr9:12786653-12786407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):91, 192

               
               
               Conread position:235-518
               
               
               Cow position:chr9:52755028-52754748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):79, 17

               
               
               Conread position:235-553
               
               
               Cow position:chr9:52267938-52267614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):35, 14

               
               
               Conread position:235-652
               
               
               Cow position:chr9:389176-388772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:285
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):15, 34

               
               
               Conread position:235-652
               
               
               Cow position:chr9:1729863-1729433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:304
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:235-673
               
               
               Cow position:chr9:28726908-28726462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 95

               
               
               Conread position:235-675
               
               
               Cow position:chr9:56453168-56453599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 75

               
               
               Conread position:235-684
               
               
               Cow position:chr9:26057605-26057173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 18

               
               
               Conread position:236-373
               
               
               Cow position:chr9:34399493-34399632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:236-417
               
               
               Cow position:chr9:35466704-35466517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:236-417
               
               
               Cow position:chr9:36624105-36623920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:236-418
               
               
               Cow position:chr9:44625044-44625218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:236-422
               
               
               Cow position:chr9:31344785-31344596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):90, 17

               
               
               Conread position:236-423
               
               
               Cow position:chr9:31694212-31694022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:236-482
               
               
               Cow position:chr9:8629087-8628845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):174, 13

               
               
               Conread position:236-521
               
               
               Cow position:chr9:23956155-23955872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 97

               
               
               Conread position:236-535
               
               
               Cow position:chr9:5900129-5899836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):179, 16

               
               
               Conread position:236-539
               
               
               Cow position:chr9:13744109-13743803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):82, 17

               
               
               Conread position:236-596
               
               
               Cow position:chr9:19555213-19555565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 56

               
               
               Conread position:236-617
               
               
               Cow position:chr9:61302826-61303215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 79

               
               
               Conread position:236-673
               
               
               Cow position:chr9:38792839-38793283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 247

               
               
               Conread position:236-674
               
               
               Cow position:chr9:51566673-51566222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 16

               
               
               Conread position:236-675
               
               
               Cow position:chr9:36410526-36410086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:302
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):95, 117

               
               
               Conread position:237-393
               
               
               Cow position:chr9:50647894-50648048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):44, 71

               
               
               Conread position:237-458
               
               
               Cow position:chr9:27345763-27345536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):78, 12

               
               
               Conread position:237-458
               
               
               Cow position:chr9:35832789-35832571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):181, 36

               
               
               Conread position:237-464
               
               
               Cow position:chr9:28156526-28156747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):187, 17

               
               
               Conread position:237-505
               
               
               Cow position:chr9:6954426-6954151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):91, 9

               
               
               Conread position:237-520
               
               
               Cow position:chr9:50310938-50310663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):88, 155

               
               
               Conread position:237-539
               
               
               Cow position:chr9:40005303-40005605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 12

               
               
               Conread position:237-576
               
               
               Cow position:chr9:39011643-39011306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 37

               
               
               Conread position:237-605
               
               
               Cow position:chr9:8919831-8920198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 9

               
               
               Conread position:237-607
               
               
               Cow position:chr9:12910574-12910197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 18

               
               
               Conread position:237-641
               
               
               Cow position:chr9:35028342-35027942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:285
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):88, 185

               
               
               Conread position:237-672
               
               
               Cow position:chr9:19902916-19903315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 49

               
               
               Conread position:237-672
               
               
               Cow position:chr9:20406480-20406901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):293, 134

               
               
               Conread position:237-673
               
               
               Cow position:chr9:20090885-20091302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 36

               
               
               Conread position:237-673
               
               
               Cow position:chr9:54677082-54677486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:313
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):83, 188

               
               
               Conread position:238-412
               
               
               Cow position:chr9:61301153-61300977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:238-417
               
               
               Cow position:chr9:61019538-61019357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):90, 14

               
               
               Conread position:238-424
               
               
               Cow position:chr9:11447981-11447796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):88, 103

               
               
               Conread position:238-448
               
               
               Cow position:chr9:8613386-8613173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):90, 14

               
               
               Conread position:238-465
               
               
               Cow position:chr9:14738079-14738304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):178, 15

               
               
               Conread position:238-467
               
               
               Cow position:chr9:64629537-64629308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):14, 36

               
               
               Conread position:238-468
               
               
               Cow position:chr9:34344436-34344669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):87, 14

               
               
               Conread position:238-477
               
               
               Cow position:chr9:47214722-47214478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):55, 11

               
               
               Conread position:238-483
               
               
               Cow position:chr9:23971067-23970823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 69

               
               
               Conread position:238-521
               
               
               Cow position:chr9:52510942-52511226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):88, 14

               
               
               Conread position:238-528
               
               
               Cow position:chr9:53109077-53109370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:201
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):195, 286

               
               
               Conread position:238-539
               
               
               Cow position:chr9:34410566-34410266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):45, 14

               
               
               Conread position:238-539
               
               
               Cow position:chr9:37934412-37934107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):47, 14

               
               
               Conread position:238-584
               
               
               Cow position:chr9:40215074-40215422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):289, 15

               
               
               Conread position:238-605
               
               
               Cow position:chr9:58448299-58447923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):86, 14

               
               
               Conread position:238-630
               
               
               Cow position:chr9:42264048-42264442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:280
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):82, 14

               
               
               Conread position:238-634
               
               
               Cow position:chr9:53762526-53762926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 14

               
               
               Conread position:238-641
               
               
               Cow position:chr9:40303308-40302893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:277
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):177, 14

               
               
               Conread position:238-644
               
               
               Cow position:chr9:52130838-52131253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:289
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):81, 94

               
               
               Conread position:238-652
               
               
               Cow position:chr9:6839817-6840254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 195

               
               
               Conread position:238-671
               
               
               Cow position:chr9:21460326-21459895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 11

               
               
               Conread position:238-671
               
               
               Cow position:chr9:61022446-61022872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 179

               
               
               Conread position:238-673
               
               
               Cow position:chr9:28772968-28773381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):238, 11

               
               
               Conread position:238-673
               
               
               Cow position:chr9:33597800-33598245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 11

               
               
               Conread position:238-674
               
               
               Cow position:chr9:20901291-20900865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:306
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):177, 15

               
               
               Conread position:238-674
               
               
               Cow position:chr9:44709660-44710087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):292, 14

               
               
               Conread position:238-675
               
               
               Cow position:chr9:22637925-22638366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:296
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):90, 120

               
               
               Conread position:238-687
               
               
               Cow position:chr9:32676504-32676964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 11

               
               
               Conread position:238-689
               
               
               Cow position:chr9:44822496-44822022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 79

               
               
               Conread position:239-385
               
               
               Cow position:chr9:388363-388219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:239-401
               
               
               Cow position:chr9:60741356-60741195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):65, 90

               
               
               Conread position:239-417
               
               
               Cow position:chr9:2397637-2397812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:239-417
               
               
               Cow position:chr9:13993590-13993770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:239-417
               
               
               Cow position:chr9:16115778-16115603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:239-417
               
               
               Cow position:chr9:35295522-35295695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:239-417
               
               
               Cow position:chr9:40221357-40221181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:239-420
               
               
               Cow position:chr9:20828731-20828915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):89, 32

               
               
               Conread position:239-422
               
               
               Cow position:chr9:3847222-3847413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:239-422
               
               
               Cow position:chr9:35932987-35932803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):70, 65

               
               
               Conread position:239-428
               
               
               Cow position:chr9:63185870-63185678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):61, 46

               
               
               Conread position:239-452
               
               
               Cow position:chr9:59699725-59699505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):41, 200

               
               
               Conread position:239-458
               
               
               Cow position:chr9:41644926-41644702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):80, 98

               
               
               Conread position:239-467
               
               
               Cow position:chr9:35049307-35049530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):42, 80

               
               
               Conread position:239-467
               
               
               Cow position:chr9:52763926-52763703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):179, 34

               
               
               Conread position:239-468
               
               
               Cow position:chr9:5110683-5110916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):89, 187

               
               
               Conread position:239-469
               
               
               Cow position:chr9:56827302-56827540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):30, 11

               
               
               Conread position:239-472
               
               
               Cow position:chr9:42586721-42586495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):179, 71

               
               
               Conread position:239-481
               
               
               Cow position:chr9:8992352-8992108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:179
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):114, 94

               
               
               Conread position:239-499
               
               
               Cow position:chr9:29819553-29819805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):177, 71

               
               
               Conread position:239-505
               
               
               Cow position:chr9:16216805-16217069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):96, 191

               
               
               Conread position:239-505
               
               
               Cow position:chr9:17840852-17840579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:200
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):92, 197

               
               
               Conread position:239-542
               
               
               Cow position:chr9:3573291-3573602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):79, 144

               
               
               Conread position:239-566
               
               
               Cow position:chr9:9311686-9312014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:231
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):180, 86

               
               
               Conread position:239-574
               
               
               Cow position:chr9:31215906-31216257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:240
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):87, 209

               
               
               Conread position:239-576
               
               
               Cow position:chr9:26477039-26477387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 95

               
               
               Conread position:239-585
               
               
               Cow position:chr9:12280800-12281149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 85

               
               
               Conread position:239-586
               
               
               Cow position:chr9:11168572-11168911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 35

               
               
               Conread position:239-596
               
               
               Cow position:chr9:41728087-41728446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 143

               
               
               Conread position:239-603
               
               
               Cow position:chr9:20755932-20755577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:263
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):87, 153

               
               
               Conread position:239-620
               
               
               Cow position:chr9:52638343-52637945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:273
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):87, 113

               
               
               Conread position:239-630
               
               
               Cow position:chr9:42061920-42062337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:239-634
               
               
               Cow position:chr9:30477945-30477559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 88

               
               
               Conread position:239-637
               
               
               Cow position:chr9:6338620-6339030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:275
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):94, 34

               
               
               Conread position:239-670
               
               
               Cow position:chr9:5433472-5433896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 93

               
               
               Conread position:239-673
               
               
               Cow position:chr9:8998180-8998619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 46

               
               
               Conread position:239-673
               
               
               Cow position:chr9:9551915-9552351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 45

               
               
               Conread position:239-673
               
               
               Cow position:chr9:18380693-18381123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 73

               
               
               Conread position:239-673
               
               
               Cow position:chr9:22318188-22318602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 68

               
               
               Conread position:239-673
               
               
               Cow position:chr9:23268864-23269290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:282
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):66, 14

               
               
               Conread position:239-673
               
               
               Cow position:chr9:23541574-23541154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 153

               
               
               Conread position:239-673
               
               
               Cow position:chr9:52406997-52407434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 37

               
               
               Conread position:239-674
               
               
               Cow position:chr9:29824843-29825295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:314
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):8, 20

               
               
               Conread position:239-674
               
               
               Cow position:chr9:34697475-34697030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 178

               
               
               Conread position:239-674
               
               
               Cow position:chr9:41416157-41416616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 305

               
               
               Conread position:239-675
               
               
               Cow position:chr9:13670463-13670903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 46

               
               
               Conread position:239-675
               
               
               Cow position:chr9:22434097-22433676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:294
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):87, 35

               
               
               Conread position:239-675
               
               
               Cow position:chr9:58673576-58674007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:284
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):98, 70

               
               
               Conread position:239-679
               
               
               Cow position:chr9:43207551-43207108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:304
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):101, 124

               
               
               Conread position:240-365
               
               
               Cow position:chr9:52643422-52643550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):33, 97

               
               
               Conread position:240-373
               
               
               Cow position:chr9:55577539-55577669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:240-383
               
               
               Cow position:chr9:3946318-3946177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:240-401
               
               
               Cow position:chr9:55284513-55284355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:240-405
               
               
               Cow position:chr9:9494988-9495149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:240-405
               
               
               Cow position:chr9:53323959-53323791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):79, 92

               
               
               Conread position:240-408
               
               
               Cow position:chr9:6237661-6237496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):163, 9

               
               
               Conread position:240-412
               
               
               Cow position:chr9:19771188-19771362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):28, 42

               
               
               Conread position:240-412
               
               
               Cow position:chr9:32052104-32052276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):60, 51

               
               
               Conread position:240-417
               
               
               Cow position:chr9:12268862-12269035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):10, 23

               
               
               Conread position:240-422
               
               
               Cow position:chr9:36401832-36401654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):176, 80

               
               
               Conread position:240-422
               
               
               Cow position:chr9:62631839-62631660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):135, 79

               
               
               Conread position:240-426
               
               
               Cow position:chr9:34917349-34917170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):175, 82

               
               
               Conread position:240-430
               
               
               Cow position:chr9:59897424-59897610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:240-432
               
               
               Cow position:chr9:22447466-22447276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):89, 29

               
               
               Conread position:240-439
               
               
               Cow position:chr9:42508656-42508861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):143, 100

               
               
               Conread position:240-464
               
               
               Cow position:chr9:7806126-7805907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):179, 67

               
               
               Conread position:240-468
               
               
               Cow position:chr9:33347653-33347432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):178, 67

               
               
               Conread position:240-470
               
               
               Cow position:chr9:33151577-33151802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):174, 67

               
               
               Conread position:240-473
               
               
               Cow position:chr9:39315690-39315910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):10, 48

               
               
               Conread position:240-475
               
               
               Cow position:chr9:34024527-34024764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 194

               
               
               Conread position:240-479
               
               
               Cow position:chr9:54664676-54664918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):85, 144

               
               
               Conread position:240-492
               
               
               Cow position:chr9:33838482-33838228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:179
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):14, 86

               
               
               Conread position:240-502
               
               
               Cow position:chr9:8834303-8834037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):67, 98

               
               
               Conread position:240-502
               
               
               Cow position:chr9:21384114-21383860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):32, 46

               
               
               Conread position:240-503
               
               
               Cow position:chr9:5342418-5342158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:192
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):175, 88

               
               
               Conread position:240-504
               
               
               Cow position:chr9:37198955-37199218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:194
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):174, 195

               
               
               Conread position:240-508
               
               
               Cow position:chr9:61351517-61351239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):38, 58

               
               
               Conread position:240-528
               
               
               Cow position:chr9:22440645-22440364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):167, 79

               
               
               Conread position:240-538
               
               
               Cow position:chr9:40507765-40507477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):62, 18

               
               
               Conread position:240-539
               
               
               Cow position:chr9:31359433-31359730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):172, 93

               
               
               Conread position:240-540
               
               
               Cow position:chr9:60080721-60081036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:223
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):80, 162

               
               
               Conread position:240-542
               
               
               Cow position:chr9:33584856-33584550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):173, 94

               
               
               Conread position:240-544
               
               
               Cow position:chr9:1878170-1877873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:218
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):288, 62

               
               
               Conread position:240-555
               
               
               Cow position:chr9:7952730-7953049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):75, 35

               
               
               Conread position:240-559
               
               
               Cow position:chr9:33114167-33114499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:240
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):67, 102

               
               
               Conread position:240-566
               
               
               Cow position:chr9:11304261-11303917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:247
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):33, 9

               
               
               Conread position:240-567
               
               
               Cow position:chr9:19034182-19034502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):86, 161

               
               
               Conread position:240-568
               
               
               Cow position:chr9:3378590-3378907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:237
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):168, 46

               
               
               Conread position:240-576
               
               
               Cow position:chr9:6852223-6851897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):244, 30

               
               
               Conread position:240-579
               
               
               Cow position:chr9:25556811-25557139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:239
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):177, 93

               
               
               Conread position:240-591
               
               
               Cow position:chr9:20579760-20579420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):241, 80

               
               
               Conread position:240-605
               
               
               Cow position:chr9:4341328-4340970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 46

               
               
               Conread position:240-613
               
               
               Cow position:chr9:41679590-41679955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 67

               
               
               Conread position:240-616
               
               
               Cow position:chr9:49847044-49847401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:250
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):45, 62

               
               
               Conread position:240-622
               
               
               Cow position:chr9:48627851-48628244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 100

               
               
               Conread position:240-630
               
               
               Cow position:chr9:25804655-25805059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:273
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):10, 184

               
               
               Conread position:240-634
               
               
               Cow position:chr9:1532486-1532107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:270
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):121, 33

               
               
               Conread position:240-650
               
               
               Cow position:chr9:49709668-49710085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 203

               
               
               Conread position:240-652
               
               
               Cow position:chr9:9573148-9573578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:291
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):51, 85

               
               
               Conread position:240-665
               
               
               Cow position:chr9:9596122-9595698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 80

               
               
               Conread position:240-668
               
               
               Cow position:chr9:58979233-58979660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 116

               
               
               Conread position:240-669
               
               
               Cow position:chr9:32307407-32306976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 98

               
               
               Conread position:240-669
               
               
               Cow position:chr9:55795586-55796019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 139

               
               
               Conread position:240-671
               
               
               Cow position:chr9:4861224-4861654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 66

               
               
               Conread position:240-671
               
               
               Cow position:chr9:34375098-34374667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 10

               
               
               Conread position:240-672
               
               
               Cow position:chr9:36491076-36490632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 295

               
               
               Conread position:240-672
               
               
               Cow position:chr9:50977427-50976983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 12

               
               
               Conread position:240-673
               
               
               Cow position:chr9:1751157-1751598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 46

               
               
               Conread position:240-673
               
               
               Cow position:chr9:3387544-3387954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:313
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):184, 45

               
               
               Conread position:240-673
               
               
               Cow position:chr9:5500692-5501115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 43

               
               
               Conread position:240-673
               
               
               Cow position:chr9:8636506-8636916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:304
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):172, 36

               
               
               Conread position:240-673
               
               
               Cow position:chr9:9461839-9461391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 134

               
               
               Conread position:240-673
               
               
               Cow position:chr9:20681575-20681143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:296
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):8, 89

               
               
               Conread position:240-673
               
               
               Cow position:chr9:41282839-41283290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 188

               
               
               Conread position:240-673
               
               
               Cow position:chr9:47906457-47906025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:314
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):86, 34

               
               
               Conread position:240-673
               
               
               Cow position:chr9:49764473-49764920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 211

               
               
               Conread position:240-674
               
               
               Cow position:chr9:5392901-5393316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 87

               
               
               Conread position:240-674
               
               
               Cow position:chr9:9443774-9443332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 38

               
               
               Conread position:240-674
               
               
               Cow position:chr9:51620272-51620701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 67

               
               
               Conread position:240-675
               
               
               Cow position:chr9:647600-648041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:295
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):7, 125

               
               
               Conread position:240-675
               
               
               Cow position:chr9:26403623-26404055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 45

               
               
               Conread position:240-675
               
               
               Cow position:chr9:54681349-54681768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 36

               
               
               Conread position:241-385
               
               
               Cow position:chr9:21816360-21816504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:241-409
               
               
               Cow position:chr9:44918448-44918283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):40, 9

               
               
               Conread position:241-412
               
               
               Cow position:chr9:23840576-23840394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):53, 105

               
               
               Conread position:241-421
               
               
               Cow position:chr9:9091280-9091095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:241-422
               
               
               Cow position:chr9:17785740-17785555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):57, 44

               
               
               Conread position:241-436
               
               
               Cow position:chr9:26388045-26388231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:241-451
               
               
               Cow position:chr9:3924284-3924484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):15, 46

               
               
               Conread position:241-453
               
               
               Cow position:chr9:32089221-32089432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):168, 33

               
               
               Conread position:241-453
               
               
               Cow position:chr9:36457825-36458044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:241-471
               
               
               Cow position:chr9:5104581-5104342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):80, 160

               
               
               Conread position:241-473
               
               
               Cow position:chr9:48016818-48017044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):166, 78

               
               
               Conread position:241-474
               
               
               Cow position:chr9:9686588-9686350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:184
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):55, 8

               
               
               Conread position:241-501
               
               
               Cow position:chr9:26102560-26102815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):11, 111

               
               
               Conread position:241-505
               
               
               Cow position:chr9:34279230-34278959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):85, 167

               
               
               Conread position:241-510
               
               
               Cow position:chr9:9459818-9460076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):153, 79

               
               
               Conread position:241-517
               
               
               Cow position:chr9:45171394-45171111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:212
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):55, 27

               
               
               Conread position:241-539
               
               
               Cow position:chr9:22408585-22408873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):7, 233

               
               
               Conread position:241-563
               
               
               Cow position:chr9:63896375-63896693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):192, 56

               
               
               Conread position:241-581
               
               
               Cow position:chr9:38624795-38624459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:236
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):85, 24

               
               
               Conread position:241-599
               
               
               Cow position:chr9:19067598-19067971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 138

               
               
               Conread position:241-634
               
               
               Cow position:chr9:27279135-27279543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 201

               
               
               Conread position:241-670
               
               
               Cow position:chr9:24887034-24887462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 191

               
               
               Conread position:241-671
               
               
               Cow position:chr9:5327091-5327516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 69

               
               
               Conread position:241-673
               
               
               Cow position:chr9:15215860-15215417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 12

               
               
               Conread position:241-673
               
               
               Cow position:chr9:61847286-61846886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:307
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):291, 66

               
               
               Conread position:241-674
               
               
               Cow position:chr9:47868853-47869272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):239, 44

               
               
               Conread position:241-675
               
               
               Cow position:chr9:28747688-28747256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 8

               
               
               Conread position:242-395
               
               
               Cow position:chr9:30194841-30194994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):98, 77

               
               
               Conread position:242-412
               
               
               Cow position:chr9:11380815-11380646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:242-412
               
               
               Cow position:chr9:34760536-34760364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:242-422
               
               
               Cow position:chr9:8645095-8645278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):86, 11

               
               
               Conread position:242-468
               
               
               Cow position:chr9:7543427-7543208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):152, 31

               
               
               Conread position:242-472
               
               
               Cow position:chr9:36627952-36628180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):176, 78

               
               
               Conread position:242-473
               
               
               Cow position:chr9:63361881-63361656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):171, 44

               
               
               Conread position:242-474
               
               
               Cow position:chr9:44584431-44584655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):182, 79

               
               
               Conread position:242-482
               
               
               Cow position:chr9:50382488-50382256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:242-495
               
               
               Cow position:chr9:59998200-59997947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):60, 44

               
               
               Conread position:242-512
               
               
               Cow position:chr9:35547094-35547374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):5, 122

               
               
               Conread position:242-527
               
               
               Cow position:chr9:38941607-38941315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):84, 194

               
               
               Conread position:242-534
               
               
               Cow position:chr9:6189533-6189247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):171, 59

               
               
               Conread position:242-539
               
               
               Cow position:chr9:4263258-4262963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):241, 8

               
               
               Conread position:242-574
               
               
               Cow position:chr9:5263334-5263669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 34

               
               
               Conread position:242-633
               
               
               Cow position:chr9:62724372-62724770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:272
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):76, 43

               
               
               Conread position:242-636
               
               
               Cow position:chr9:58614327-58614720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 79

               
               
               Conread position:242-643
               
               
               Cow position:chr9:45141766-45141371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 71

               
               
               Conread position:242-672
               
               
               Cow position:chr9:6192627-6192196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 85

               
               
               Conread position:242-673
               
               
               Cow position:chr9:9403341-9402921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 25

               
               
               Conread position:242-673
               
               
               Cow position:chr9:31346780-31347218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 6

               
               
               Conread position:242-673
               
               
               Cow position:chr9:32732834-32732422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:308
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):242, 71

               
               
               Conread position:242-673
               
               
               Cow position:chr9:37016731-37017148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 14

               
               
               Conread position:242-674
               
               
               Cow position:chr9:9516918-9516505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):240, 68

               
               
               Conread position:242-677
               
               
               Cow position:chr9:6951942-6952359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 65

               
               
               Conread position:242-687
               
               
               Cow position:chr9:26279343-26278895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 197

               
               
               Conread position:243-426
               
               
               Cow position:chr9:55807465-55807648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):174, 81

               
               
               Conread position:243-440
               
               
               Cow position:chr9:34707479-34707282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):175, 91

               
               
               Conread position:243-672
               
               
               Cow position:chr9:9199940-9199521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 34

               
               
               Conread position:243-673
               
               
               Cow position:chr9:34286629-34287058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 193

               
               
               Conread position:243-675
               
               
               Cow position:chr9:6934250-6933806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 161

               
               
               Conread position:243-675
               
               
               Cow position:chr9:11299842-11299431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):286, 84

               
               
               Conread position:243-686
               
               
               Cow position:chr9:17872276-17871830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 76

               
               
               Conread position:244-431
               
               
               Cow position:chr9:34362568-34362758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:245-422
               
               
               Cow position:chr9:24079138-24079313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):173, 75

               
               
               Conread position:245-422
               
               
               Cow position:chr9:48282027-48282213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:245-460
               
               
               Cow position:chr9:21292574-21292357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):170, 83

               
               
               Conread position:245-468
               
               
               Cow position:chr9:43159588-43159810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):151, 28

               
               
               Conread position:245-586
               
               
               Cow position:chr9:51721054-51720721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):222, 40

               
               
               Conread position:245-592
               
               
               Cow position:chr9:56065399-56065735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:240
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):291, 74

               
               
               Conread position:245-652
               
               
               Cow position:chr9:64105736-64106149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 89

               
               
               Conread position:245-672
               
               
               Cow position:chr9:8723628-8724059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 60

               
               
               Conread position:245-673
               
               
               Cow position:chr9:34689772-34689348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:300
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):89, 167

               
               
               Conread position:245-673
               
               
               Cow position:chr9:35167002-35167432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 28

               
               
               Conread position:246-412
               
               
               Cow position:chr9:11873461-11873304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:246-423
               
               
               Cow position:chr9:48901001-48900824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):78, 33

               
               
               Conread position:246-430
               
               
               Cow position:chr9:34423452-34423639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):82, 177

               
               
               Conread position:246-672
               
               
               Cow position:chr9:33940431-33940870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 15

               
               
               Conread position:246-673
               
               
               Cow position:chr9:15806092-15805657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 108

               
               
               Conread position:249-412
               
               
               Cow position:chr9:45740307-45740142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:249-421
               
               
               Cow position:chr9:32773059-32773223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):168, 56

               
               
               Conread position:249-430
               
               
               Cow position:chr9:26394511-26394329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):164, 84

               
               
               Conread position:249-574
               
               
               Cow position:chr9:5456335-5456005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):93, 70

               
               
               Conread position:249-588
               
               
               Cow position:chr9:12226148-12225798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 120

               
               
               Conread position:249-597
               
               
               Cow position:chr9:30123767-30124112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 56

               
               
               Conread position:249-600
               
               
               Cow position:chr9:11123643-11123293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 72

               
               
               Conread position:249-640
               
               
               Cow position:chr9:43623102-43623491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:263
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):89, 114

               
               
               Conread position:249-650
               
               
               Cow position:chr9:33822954-33823339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:283
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):89, 22

               
               
               Conread position:249-650
               
               
               Cow position:chr9:56011349-56011738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):166, 25

               
               
               Conread position:249-671
               
               
               Cow position:chr9:20847783-20848201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 25

               
               
               Conread position:249-673
               
               
               Cow position:chr9:33219120-33218688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 137

               
               
               Conread position:250-456
               
               
               Cow position:chr9:49402486-49402697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):59, 154

               
               
               Conread position:250-673
               
               
               Cow position:chr9:16300736-16300307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 23

               
               
               Conread position:250-674
               
               
               Cow position:chr9:61738759-61739182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 191

               
               
               Conread position:250-676
               
               
               Cow position:chr9:4629947-4630369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:301
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):174, 72

               
               
               Conread position:251-406
               
               
               Cow position:chr9:21780762-21780918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):76, 44

               
               
               Conread position:251-431
               
               
               Cow position:chr9:43679960-43680142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):167, 83

               
               
               Conread position:251-457
               
               
               Cow position:chr9:39148921-39149126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):164, 73

               
               
               Conread position:251-468
               
               
               Cow position:chr9:45749271-45749499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:251-474
               
               
               Cow position:chr9:7611948-7611726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):178, 46

               
               
               Conread position:251-490
               
               
               Cow position:chr9:54986322-54986074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):75, 215

               
               
               Conread position:251-521
               
               
               Cow position:chr9:9358657-9358924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):164, 17

               
               
               Conread position:251-587
               
               
               Cow position:chr9:8901390-8901042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 108

               
               
               Conread position:251-594
               
               
               Cow position:chr9:62150950-62151290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:223
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):60, 35

               
               
               Conread position:251-605
               
               
               Cow position:chr9:9815252-9815613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 22

               
               
               Conread position:251-629
               
               
               Cow position:chr9:17799474-17799850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 69

               
               
               Conread position:251-673
               
               
               Cow position:chr9:63785070-63784661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:299
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):164, 59

               
               
               Conread position:251-674
               
               
               Cow position:chr9:9724040-9723617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 166

               
               
               Conread position:251-674
               
               
               Cow position:chr9:22152243-22151822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 73

               
               
               Conread position:251-674
               
               
               Cow position:chr9:22443784-22443346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 73

               
               
               Conread position:251-675
               
               
               Cow position:chr9:9753563-9753130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 10

               
               
               Conread position:252-422
               
               
               Cow position:chr9:8537146-8537315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):76, 103

               
               
               Conread position:252-422
               
               
               Cow position:chr9:14357252-14357426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:253-417
               
               
               Cow position:chr9:37955333-37955166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):47, 32

               
               
               Conread position:253-670
               
               
               Cow position:chr9:54716776-54716361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 165

               
               
               Conread position:253-675
               
               
               Cow position:chr9:52485071-52484651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 71

               
               
               Conread position:254-422
               
               
               Cow position:chr9:52998536-52998369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):62, 15

               
               
               Conread position:254-429
               
               
               Cow position:chr9:1712866-1712686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:254-430
               
               
               Cow position:chr9:64310937-64310758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:254-453
               
               
               Cow position:chr9:22165875-22165670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):62, 185

               
               
               Conread position:254-468
               
               
               Cow position:chr9:55529645-55529853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:254-500
               
               
               Cow position:chr9:5164143-5163893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):72, 15

               
               
               Conread position:254-506
               
               
               Cow position:chr9:25400345-25400100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):161, 52

               
               
               Conread position:254-527
               
               
               Cow position:chr9:21080415-21080679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):160, 19

               
               
               Conread position:254-673
               
               
               Cow position:chr9:10010654-10011064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 116

               
               
               Conread position:254-674
               
               
               Cow position:chr9:29185298-29184868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 188

               
               
               Conread position:254-675
               
               
               Cow position:chr9:34958210-34957786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 73

               
               
               Conread position:254-675
               
               
               Cow position:chr9:52578696-52578267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 29

               
               
               Conread position:255-591
               
               
               Cow position:chr9:31638815-31638455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):14, 36

               
               
               Conread position:255-627
               
               
               Cow position:chr9:16811814-16811441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:265
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):14, 39

               
               
               Conread position:257-468
               
               
               Cow position:chr9:31514090-31513881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):69, 144

               
               
               Conread position:257-503
               
               
               Cow position:chr9:5469714-5469956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):69, 53

               
               
               Conread position:257-509
               
               
               Cow position:chr9:29195187-29194923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):58, 185

               
               
               Conread position:257-528
               
               
               Cow position:chr9:29339467-29339207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):226, 42

               
               
               Conread position:257-651
               
               
               Cow position:chr9:3185974-3186385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 64

               
               
               Conread position:257-663
               
               
               Cow position:chr9:18216067-18215655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:286
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):69, 95

               
               
               Conread position:257-671
               
               
               Cow position:chr9:38846496-38846087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 166

               
               
               Conread position:257-673
               
               
               Cow position:chr9:3070572-3070159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:302
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):60, 109

               
               
               Conread position:257-673
               
               
               Cow position:chr9:55288044-55287627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 72

               
               
               Conread position:258-458
               
               
               Cow position:chr9:11030035-11030232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):7, 64

               
               
               Conread position:258-465
               
               
               Cow position:chr9:44944627-44944425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):199, 49

               
               
               Conread position:258-494
               
               
               Cow position:chr9:24652245-24652496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):49, 81

               
               
               Conread position:258-673
               
               
               Cow position:chr9:29006405-29006824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 70

               
               
               Conread position:259-534
               
               
               Cow position:chr9:3353213-3353475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):11, 26

               
               
               Conread position:259-673
               
               
               Cow position:chr9:30402582-30402156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 169

               
               
               Conread position:261-452
               
               
               Cow position:chr9:20637224-20637415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):154, 66

               
               
               Conread position:261-673
               
               
               Cow position:chr9:21030153-21030580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:284
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):46, 82

               
               
               Conread position:261-676
               
               
               Cow position:chr9:23388831-23388410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 136

               
               
               Conread position:262-467
               
               
               Cow position:chr9:55495139-55494929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:265-492
               
               
               Cow position:chr9:33541905-33542139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:267-422
               
               
               Cow position:chr9:35403441-35403594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):33, 18

               
               
               Conread position:267-568
               
               
               Cow position:chr9:41394795-41394492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:202
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):64, 176

               
               
               Conread position:268-673
               
               
               Cow position:chr9:57897247-57896861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 42

               
               
               Conread position:270-430
               
               
               Cow position:chr9:43202193-43202355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):138, 63

               
               
               Conread position:270-475
               
               
               Cow position:chr9:39758375-39758583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):39, 19

               
               
               Conread position:271-422
               
               
               Cow position:chr9:5172675-5172521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:273-670
               
               
               Cow position:chr9:20416653-20416247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 148

               
               
               Conread position:274-474
               
               
               Cow position:chr9:52258204-52258003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):40, 126

               
               
               Conread position:276-468
               
               
               Cow position:chr9:22466641-22466830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):141, 44

               
               
               Conread position:277-672
               
               
               Cow position:chr9:17741076-17740681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 112

               
               
               Conread position:279-673
               
               
               Cow position:chr9:41513504-41513883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:268
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):260, 56

               
               
               Conread position:285-673
               
               
               Cow position:chr9:8534815-8534419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 20

               
               
               Conread position:286-452
               
               
               Cow position:chr9:6293468-6293637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):23, 150

               
               
               Conread position:286-528
               
               
               Cow position:chr9:6596351-6596117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:190
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):126, 34

               
               
               Conread position:289-675
               
               
               Cow position:chr9:33092832-33093210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:272
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):37, 122

               
               
               Conread position:291-605
               
               
               Cow position:chr9:9654427-9654113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 42

               
               
               Conread position:291-674
               
               
               Cow position:chr9:36445499-36445887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 47

               
               
               Conread position:301-571
               
               
               Cow position:chr9:64064472-64064200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):118, 9

               
               
               Conread position:301-664
               
               
               Cow position:chr9:4646433-4646073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 50

               
               
               Conread position:301-670
               
               
               Cow position:chr9:3782260-3782624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 25

               
               
               Conread position:301-673
               
               
               Cow position:chr9:54528403-54528779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 33

               
               
               Conread position:302-534
               
               
               Cow position:chr9:5399023-5399262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):14, 140

               
               
               Conread position:302-634
               
               
               Cow position:chr9:32115711-32115383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):13, 87

               
               
               Conread position:302-668
               
               
               Cow position:chr9:31079186-31078822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 18

               
               
               Conread position:302-673
               
               
               Cow position:chr9:23042665-23043039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:260
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):14, 114

               
               
               Conread position:302-673
               
               
               Cow position:chr9:64559991-64559623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 31

               
               
               Conread position:302-674
               
               
               Cow position:chr9:3958957-3959319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):15, 33

               
               
               Conread position:303-475
               
               
               Cow position:chr9:49545474-49545303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):15, 32

               
               
               Conread position:303-608
               
               
               Cow position:chr9:37677785-37678090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):7, 32

               
               
               Conread position:303-673
               
               
               Cow position:chr9:21888060-21888433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 131

               
               
               Conread position:305-430
               
               
               Cow position:chr9:26277725-26277849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):109, 27

               
               
               Conread position:305-659
               
               
               Cow position:chr9:18217205-18216850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 28

               
               
               Conread position:305-672
               
               
               Cow position:chr9:10309102-10308744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 17

               
               
               Conread position:306-614
               
               
               Cow position:chr9:3738327-3738013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 18

               
               
               Conread position:306-634
               
               
               Cow position:chr9:4580508-4580195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:236
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):110, 11

               
               
               Conread position:307-506
               
               
               Cow position:chr9:41781552-41781750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):109, 20

               
               
               Conread position:307-609
               
               
               Cow position:chr9:8524757-8525040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):191, 27

               
               
               Conread position:308-422
               
               
               Cow position:chr9:23403715-23403829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:95
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):105, 25

               
               
               Conread position:308-467
               
               
               Cow position:chr9:19758616-19758776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):109, 122

               
               
               Conread position:309-675
               
               
               Cow position:chr9:44467442-44467083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):218, 110

               
               
               Conread position:310-452
               
               
               Cow position:chr9:55354508-55354653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):16, 126

               
               
               Conread position:310-506
               
               
               Cow position:chr9:44770292-44770101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):164, 17

               
               
               Conread position:310-605
               
               
               Cow position:chr9:50543528-50543224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:218
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):78, 17

               
               
               Conread position:310-617
               
               
               Cow position:chr9:62668149-62668464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 23

               
               
               Conread position:310-630
               
               
               Cow position:chr9:4268083-4267759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 17

               
               
               Conread position:310-651
               
               
               Cow position:chr9:8562721-8563083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 23

               
               
               Conread position:310-660
               
               
               Cow position:chr9:50139184-50139532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 24

               
               
               Conread position:310-669
               
               
               Cow position:chr9:59386872-59386517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 130

               
               
               Conread position:310-671
               
               
               Cow position:chr9:42446083-42445720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 27

               
               
               Conread position:310-673
               
               
               Cow position:chr9:1520840-1520467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 24

               
               
               Conread position:310-673
               
               
               Cow position:chr9:8288515-8288881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 80

               
               
               Conread position:310-673
               
               
               Cow position:chr9:39681235-39681620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 127

               
               
               Conread position:311-445
               
               
               Cow position:chr9:34065650-34065513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):104, 22

               
               
               Conread position:311-669
               
               
               Cow position:chr9:51204632-51204985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 23

               
               
               Conread position:311-673
               
               
               Cow position:chr9:23264894-23265246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):108, 22

               
               
               Conread position:311-673
               
               
               Cow position:chr9:26435158-26434803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:255
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):13, 23

               
               
               Conread position:311-673
               
               
               Cow position:chr9:50081140-50080782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 22

               
               
               Conread position:311-673
               
               
               Cow position:chr9:56772976-56773343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 22

               
               
               Conread position:311-675
               
               
               Cow position:chr9:53413338-53412983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:254
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):118, 22

               
               
               Conread position:311-687
               
               
               Cow position:chr9:17411295-17410907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:270
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):13, 24

               
               
               Conread position:312-672
               
               
               Cow position:chr9:64155952-64155593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 128

               
               
               Conread position:312-674
               
               
               Cow position:chr9:5245753-5246114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 22

               
               
               Conread position:313-468
               
               
               Cow position:chr9:35793579-35793728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):102, 20

               
               
               Conread position:313-530
               
               
               Cow position:chr9:38645442-38645223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):91, 20

               
               
               Conread position:313-540
               
               
               Cow position:chr9:52513546-52513322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):106, 20

               
               
               Conread position:313-645
               
               
               Cow position:chr9:11319734-11319396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 123

               
               
               Conread position:313-672
               
               
               Cow position:chr9:62399866-62400219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:249
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):98, 21

               
               
               Conread position:313-674
               
               
               Cow position:chr9:61997701-61997330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 20

               
               
               Conread position:314-521
               
               
               Cow position:chr9:46664728-46664933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):39, 23

               
               
               Conread position:314-528
               
               
               Cow position:chr9:52598818-52598604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):102, 19

               
               
               Conread position:314-673
               
               
               Cow position:chr9:55084398-55084033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 19

               
               
               Conread position:314-673
               
               
               Cow position:chr9:63745718-63746068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:249
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):150, 19

               
               
               Conread position:314-674
               
               
               Cow position:chr9:18342634-18342988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 121

               
               
               Conread position:315-544
               
               
               Cow position:chr9:23797139-23797371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):104, 120

               
               
               Conread position:315-663
               
               
               Cow position:chr9:33681563-33681938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:268
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):103, 18

               
               
               Conread position:315-673
               
               
               Cow position:chr9:5594406-5594764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 104

               
               
               Conread position:315-673
               
               
               Cow position:chr9:62357626-62357267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):12, 118

               
               
               Conread position:315-673
               
               
               Cow position:chr9:62442194-62442546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:253
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):109, 19

               
               
               Conread position:315-675
               
               
               Cow position:chr9:28354421-28354799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 18

               
               
               Conread position:316-554
               
               
               Cow position:chr9:42478577-42478341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):99, 17

               
               
               Conread position:317-590
               
               
               Cow position:chr9:55321542-55321822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:203
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):102, 114

               
               
               Conread position:318-625
               
               
               Cow position:chr9:43443711-43444011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:222
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):50, 15

               
               
               Conread position:319-469
               
               
               Cow position:chr9:34973805-34973653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:320-549
               
               
               Cow position:chr9:52839970-52839748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):99, 13

               
               
               Conread position:320-671
               
               
               Cow position:chr9:29684054-29684409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:249
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):104, 23

               
               
               Conread position:320-673
               
               
               Cow position:chr9:9625102-9624764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):85, 53

               
               
               Conread position:321-460
               
               
               Cow position:chr9:13742433-13742573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):94, 6

               
               
               Conread position:321-519
               
               
               Cow position:chr9:22461823-22461631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):24, 72

               
               
               Conread position:321-519
               
               
               Cow position:chr9:28754729-28754929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):92, 12

               
               
               Conread position:321-725
               
               
               Cow position:chr9:62656712-62657109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:278
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):73, 115

               
               
               Conread position:322-457
               
               
               Cow position:chr9:34014338-34014202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):93, 11

               
               
               Conread position:322-520
               
               
               Cow position:chr9:28378879-28379080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):107, 11

               
               
               Conread position:322-528
               
               
               Cow position:chr9:3343660-3343860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):93, 12

               
               
               Conread position:323-521
               
               
               Cow position:chr9:23788351-23788549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):93, 11

               
               
               Conread position:323-552
               
               
               Cow position:chr9:33696947-33697170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):146, 37

               
               
               Conread position:323-573
               
               
               Cow position:chr9:5077793-5077553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):95, 10

               
               
               Conread position:323-673
               
               
               Cow position:chr9:7634183-7634531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 14

               
               
               Conread position:323-675
               
               
               Cow position:chr9:43870887-43871238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 10

               
               
               Conread position:324-674
               
               
               Cow position:chr9:55075215-55074870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 10

               
               
               Conread position:325-636
               
               
               Cow position:chr9:62908107-62907813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):12, 90

               
               
               Conread position:327-592
               
               
               Cow position:chr9:34106629-34106909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):22, 30

               
               
               Conread position:327-644
               
               
               Cow position:chr9:15225381-15225055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):89, 98

               
               
               Conread position:327-665
               
               
               Cow position:chr9:25921738-25922079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):92, 111

               
               
               Conread position:327-673
               
               
               Cow position:chr9:34309944-34310298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):156, 50

               
               
               Conread position:328-539
               
               
               Cow position:chr9:3774081-3774290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):90, 66

               
               
               Conread position:328-539
               
               
               Cow position:chr9:10819912-10819703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):96, 90

               
               
               Conread position:328-630
               
               
               Cow position:chr9:1972864-1973163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:220
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):107, 79

               
               
               Conread position:328-673
               
               
               Cow position:chr9:5763714-5763366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 22

               
               
               Conread position:328-673
               
               
               Cow position:chr9:37069643-37069305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 112

               
               
               Conread position:328-674
               
               
               Cow position:chr9:5219256-5218914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 109

               
               
               Conread position:329-466
               
               
               Cow position:chr9:31098969-31098828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):90, 106

               
               
               Conread position:329-675
               
               
               Cow position:chr9:45756280-45756623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 200

               
               
               Conread position:330-673
               
               
               Cow position:chr9:32371833-32371496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 59

               
               
               Conread position:331-668
               
               
               Cow position:chr9:55889734-55890068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 13

               
               
               Conread position:331-675
               
               
               Cow position:chr9:59795375-59795014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:255
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):29, 100

               
               
               Conread position:332-600
               
               
               Cow position:chr9:49416907-49417182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 107

               
               
               Conread position:333-686
               
               
               Cow position:chr9:5319543-5319907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 56

               
               
               Conread position:336-615
               
               
               Cow position:chr9:19493542-19493253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 102

               
               
               Conread position:337-473
               
               
               Cow position:chr9:38289396-38289263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:337-517
               
               
               Cow position:chr9:55532739-55532922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):91, 163

               
               
               Conread position:337-518
               
               
               Cow position:chr9:32982150-32981963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):81, 103

               
               
               Conread position:337-565
               
               
               Cow position:chr9:58670668-58670887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):146, 14

               
               
               Conread position:337-584
               
               
               Cow position:chr9:49293218-49292970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):81, 102

               
               
               Conread position:337-652
               
               
               Cow position:chr9:767224-766907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:230
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):82, 22

               
               
               Conread position:337-672
               
               
               Cow position:chr9:46316856-46316525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 45

               
               
               Conread position:337-673
               
               
               Cow position:chr9:5509651-5509988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 9

               
               
               Conread position:337-673
               
               
               Cow position:chr9:24872761-24873113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:251
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):81, 69

               
               
               Conread position:337-675
               
               
               Cow position:chr9:6879704-6880036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 76

               
               
               Conread position:337-675
               
               
               Cow position:chr9:7362953-7363293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 76

               
               
               Conread position:338-522
               
               
               Cow position:chr9:26310432-26310621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):80, 97

               
               
               Conread position:338-553
               
               
               Cow position:chr9:51557559-51557351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:339-672
               
               
               Cow position:chr9:3220063-3220386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):80, 96

               
               
               Conread position:344-517
               
               
               Cow position:chr9:40776730-40776905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):71, 91

               
               
               Conread position:344-540
               
               
               Cow position:chr9:54178488-54178302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:345-586
               
               
               Cow position:chr9:44921467-44921210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):42, 97

               
               
               Conread position:346-539
               
               
               Cow position:chr9:41486308-41486111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):68, 26

               
               
               Conread position:347-673
               
               
               Cow position:chr9:1949852-1950183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 125

               
               
               Conread position:347-675
               
               
               Cow position:chr9:39577674-39578000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:237
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):138, 32

               
               
               Conread position:348-576
               
               
               Cow position:chr9:43936881-43937110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):69, 116

               
               
               Conread position:352-610
               
               
               Cow position:chr9:47500272-47500002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):77, 171

               
               
               Conread position:354-535
               
               
               Cow position:chr9:53326809-53326625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):65, 71

               
               
               Conread position:354-592
               
               
               Cow position:chr9:9823564-9823319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):65, 77

               
               
               Conread position:354-675
               
               
               Cow position:chr9:17928699-17929039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):70, 65

               
               
               Conread position:354-675
               
               
               Cow position:chr9:24997575-24997250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 32

               
               
               Conread position:359-587
               
               
               Cow position:chr9:43875772-43875540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):33, 81

               
               
               Conread position:359-616
               
               
               Cow position:chr9:4512435-4512698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):70, 64

               
               
               Conread position:359-673
               
               
               Cow position:chr9:35904798-35904487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):56, 85

               
               
               Conread position:359-675
               
               
               Cow position:chr9:25964886-25964558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:361-697
               
               
               Cow position:chr9:22114686-22114346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 76

               
               
               Conread position:363-629
               
               
               Cow position:chr9:53211540-53211277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):62, 56

               
               
               Conread position:364-673
               
               
               Cow position:chr9:5162098-5161802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):51, 60

               
               
               Conread position:368-629
               
               
               Cow position:chr9:44834007-44833745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):62, 89

               
               
               Conread position:368-662
               
               
               Cow position:chr9:48107160-48106866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):47, 149

               
               
               Conread position:368-675
               
               
               Cow position:chr9:49983133-49982831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:224
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):62, 101

               
               
               Conread position:371-687
               
               
               Cow position:chr9:41789243-41789556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:232
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):53, 48

               
               
               Conread position:375-674
               
               
               Cow position:chr9:35849867-35850164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:210
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):44, 63

               
               
               Conread position:378-662
               
               
               Cow position:chr9:62134658-62134367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):22, 9

               
               
               Conread position:384-673
               
               
               Cow position:chr9:38343862-38344158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 32

               
               
               Conread position:384-675
               
               
               Cow position:chr9:9416423-9416141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):26, 53

               
               
               Conread position:389-634
               
               
               Cow position:chr9:33038483-33038233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:189
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):36, 12

               
               
               Conread position:390-668
               
               
               Cow position:chr9:28735466-28735738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):40, 82

               
               
               Conread position:396-674
               
               
               Cow position:chr9:1952286-1952004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 23

               
               
               Conread position:399-673
               
               
               Cow position:chr9:6225468-6225188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 39

               
               
               Conread position:399-674
               
               
               Cow position:chr9:3410769-3411035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):15, 38

               
               
               Conread position:401-673
               
               
               Cow position:chr9:20961291-20961024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):23, 18

               
               
               Conread position:405-640
               
               
               Cow position:chr9:32710922-32711163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):19, 14

               
               
               Conread position:406-673
               
               
               Cow position:chr9:20989455-20989190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):15, 31

               
               
               Conread position:408-652
               
               
               Cow position:chr9:35360108-35359859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):16, 11

               
               
               Conread position:410-667
               
               
               Cow position:chr9:1997134-1997390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:202
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):14, 161

               
               
               Conread position:415-673
               
               
               Cow position:chr9:30749585-30749321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):15, 9

               
               
               Conread position:417-625
               
               
               Cow position:chr9:30195222-30195429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):67, 18

               
               
               Conread position:417-671
               
               
               Cow position:chr9:29035028-29034777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:201
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):49, 18

               
               
               Conread position:417-673
               
               
               Cow position:chr9:4128773-4128520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):113, 19

               
               
               Conread position:417-673
               
               
               Cow position:chr9:22361018-22361278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 18

               
               
               Conread position:417-674
               
               
               Cow position:chr9:40105475-40105742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):111, 11

               
               
               Conread position:418-671
               
               
               Cow position:chr9:1712467-1712223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):74, 17

               
               
               Conread position:425-580
               
               
               Cow position:chr9:4324141-4323983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):102, 11

               
               
               Conread position:434-620
               
               
               Cow position:chr9:49279488-49279689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):48, 96

               
               
               Conread position:434-673
               
               
               Cow position:chr9:35306094-35305856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):36, 86

               
               
               Conread position:435-634
               
               
               Cow position:chr9:50667446-50667649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):46, 85

               
               
               Conread position:435-672
               
               
               Cow position:chr9:32812374-32812611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 40

               
               
               Conread position:436-625
               
               
               Cow position:chr9:51011510-51011324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):103, 27

               
               
               Conread position:436-673
               
               
               Cow position:chr9:18002928-18002685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:192
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):48, 87

               
               
               Conread position:436-674
               
               
               Cow position:chr9:64517073-64516831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:182
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):93, 213

               
               
               Conread position:438-673
               
               
               Cow position:chr9:41652814-41653053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):91, 82

               
               
               Conread position:438-674
               
               
               Cow position:chr9:34666448-34666674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):46, 161

               
               
               Conread position:438-681
               
               
               Cow position:chr9:40603973-40604221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):82, 152

               
               
               Conread position:439-672
               
               
               Cow position:chr9:26390798-26391031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):46, 7

               
               
               Conread position:440-674
               
               
               Cow position:chr9:60037680-60037921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):43, 161

               
               
               Conread position:440-675
               
               
               Cow position:chr9:53602457-53602679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):28, 42

               
               
               Conread position:440-676
               
               
               Cow position:chr9:49403789-49404020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):36, 81

               
               
               Conread position:441-672
               
               
               Cow position:chr9:22228049-22227823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):28, 41

               
               
               Conread position:444-674
               
               
               Cow position:chr9:36066939-36067171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):26, 79

               
               
               Conread position:450-673
               
               
               Cow position:chr9:42998431-42998207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):33, 74

               
               
               Conread position:453-673
               
               
               Cow position:chr9:16218606-16218379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):28, 17

               
               
               Conread position:462-673
               
               
               Cow position:chr9:27052286-27052069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):23, 59

               
               
               Conread position:463-665
               
               
               Cow position:chr9:45171109-45170913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):67, 8

               
               
               Conread position:472-673
               
               
               Cow position:chr9:53608334-53608130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):7, 176

               
               
               Conread position:483-667
               
               
               Cow position:chr9:38875503-38875316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):43, 36

               
               
               Conread position:161-674
               
               
               Cow position:chrX:42170984-42171509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:532
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 22

               
               
               Conread position:162-549
               
               
               Cow position:chrX:4296515-4296902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:248
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):80, 32

               
               
               Conread position:162-673
               
               
               Cow position:chrX:25815582-25816104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 21

               
               
               Conread position:182-466
               
               
               Cow position:chrX:11654062-11653764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:215
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):9, 158

               
               
               Conread position:218-673
               
               
               Cow position:chrX:35269112-35268682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 62

               
               
               Conread position:227-674
               
               
               Cow position:chrX:1503550-1503129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):255, 58

               
               
               Conread position:230-675
               
               
               Cow position:chrX:21663536-21663099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:301
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):20, 97

               
               
               Conread position:231-606
               
               
               Cow position:chrX:47279697-47280077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:260
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):76, 130

               
               
               Conread position:232-412
               
               
               Cow position:chrX:27170974-27170795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):13, 26

               
               
               Conread position:232-422
               
               
               Cow position:chrX:23471630-23471821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):186, 0

               
               
               Conread position:233-517
               
               
               Cow position:chrX:18964598-18964876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):251, 16

               
               
               Conread position:233-673
               
               
               Cow position:chrX:38549683-38549240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 16

               
               
               Conread position:234-397
               
               
               Cow position:chrX:33678235-33678402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):92, 18

               
               
               Conread position:234-413
               
               
               Cow position:chrX:15100216-15100038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):16, 57

               
               
               Conread position:234-413
               
               
               Cow position:chrX:31983342-31983530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:234-422
               
               
               Cow position:chrX:41453535-41453347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):95, 72

               
               
               Conread position:234-425
               
               
               Cow position:chrX:39886977-39887172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):92, 18

               
               
               Conread position:234-434
               
               
               Cow position:chrX:1101786-1101590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):184, 94

               
               
               Conread position:234-465
               
               
               Cow position:chrX:29733357-29733591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):49, 13

               
               
               Conread position:234-467
               
               
               Cow position:chrX:42432277-42432516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):18, 84

               
               
               Conread position:234-469
               
               
               Cow position:chrX:40337147-40336908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):92, 176

               
               
               Conread position:234-478
               
               
               Cow position:chrX:42836413-42836168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):96, 13

               
               
               Conread position:234-482
               
               
               Cow position:chrX:24633922-24633668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):95, 33

               
               
               Conread position:234-503
               
               
               Cow position:chrX:48558981-48558709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):76, 15

               
               
               Conread position:234-521
               
               
               Cow position:chrX:40108277-40108572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):76, 108

               
               
               Conread position:234-524
               
               
               Cow position:chrX:20957474-20957188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):9, 23

               
               
               Conread position:234-539
               
               
               Cow position:chrX:6559219-6559519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:210
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):11, 132

               
               
               Conread position:234-540
               
               
               Cow position:chrX:22284074-22283757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:234-551
               
               
               Cow position:chrX:22115078-22115403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 206

               
               
               Conread position:234-596
               
               
               Cow position:chrX:41027396-41027022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 204

               
               
               Conread position:234-634
               
               
               Cow position:chrX:25207626-25208016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:281
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):194, 18

               
               
               Conread position:234-640
               
               
               Cow position:chrX:47186089-47186496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:276
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):10, 131

               
               
               Conread position:234-671
               
               
               Cow position:chrX:31250626-31250183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 205

               
               
               Conread position:234-673
               
               
               Cow position:chrX:8925917-8925497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 52

               
               
               Conread position:234-673
               
               
               Cow position:chrX:28846658-28847087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:315
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):110, 18

               
               
               Conread position:234-673
               
               
               Cow position:chrX:34554959-34554518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:312
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):92, 13

               
               
               Conread position:234-673
               
               
               Cow position:chrX:45968374-45967955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:296
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):11, 41

               
               
               Conread position:234-674
               
               
               Cow position:chrX:5637942-5638379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 91

               
               
               Conread position:234-674
               
               
               Cow position:chrX:30922410-30921976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:292
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):21, 190

               
               
               Conread position:234-675
               
               
               Cow position:chrX:27508789-27509230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 18

               
               
               Conread position:234-686
               
               
               Cow position:chrX:5017180-5017630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 141

               
               
               Conread position:234-691
               
               
               Cow position:chrX:44397247-44396788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 150

               
               
               Conread position:235-407
               
               
               Cow position:chrX:29681882-29682050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):8, 52

               
               
               Conread position:235-416
               
               
               Cow position:chrX:23485766-23485573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:235-440
               
               
               Cow position:chrX:23358881-23359085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):8, 99

               
               
               Conread position:235-450
               
               
               Cow position:chrX:20583895-20583682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):183, 38

               
               
               Conread position:235-450
               
               
               Cow position:chrX:31480199-31479987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):113, 14

               
               
               Conread position:235-468
               
               
               Cow position:chrX:39290591-39290357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):15, 100

               
               
               Conread position:235-470
               
               
               Cow position:chrX:4327947-4328187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):32, 119

               
               
               Conread position:235-477
               
               
               Cow position:chrX:20677907-20678148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):39, 97

               
               
               Conread position:235-487
               
               
               Cow position:chrX:4289669-4289420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):178, 75

               
               
               Conread position:235-519
               
               
               Cow position:chrX:35986051-35985764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:212
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):8, 40

               
               
               Conread position:235-533
               
               
               Cow position:chrX:38321149-38321455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):91, 17

               
               
               Conread position:235-568
               
               
               Cow position:chrX:27261424-27261086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 17

               
               
               Conread position:235-605
               
               
               Cow position:chrX:8917632-8917252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:260
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):8, 125

               
               
               Conread position:235-634
               
               
               Cow position:chrX:4399352-4398956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 14

               
               
               Conread position:235-673
               
               
               Cow position:chrX:6488799-6488378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:312
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):60, 18

               
               
               Conread position:235-673
               
               
               Cow position:chrX:31489755-31489304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 17

               
               
               Conread position:235-673
               
               
               Cow position:chrX:36283574-36283137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 18

               
               
               Conread position:235-674
               
               
               Cow position:chrX:20887417-20887854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 11

               
               
               Conread position:235-675
               
               
               Cow position:chrX:7722208-7721774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 14

               
               
               Conread position:235-675
               
               
               Cow position:chrX:21593525-21593073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 17

               
               
               Conread position:236-405
               
               
               Cow position:chrX:1938246-1938077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):92, 16

               
               
               Conread position:236-413
               
               
               Cow position:chrX:6480361-6480541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:236-422
               
               
               Cow position:chrX:8642278-8642091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):90, 17

               
               
               Conread position:236-427
               
               
               Cow position:chrX:16763697-16763886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):179, 18

               
               
               Conread position:236-471
               
               
               Cow position:chrX:27668728-27668963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 53

               
               
               Conread position:236-478
               
               
               Cow position:chrX:17966557-17966327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):177, 13

               
               
               Conread position:236-500
               
               
               Cow position:chrX:5063469-5063217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):90, 17

               
               
               Conread position:236-506
               
               
               Cow position:chrX:11325873-11326141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):15, 84

               
               
               Conread position:236-506
               
               
               Cow position:chrX:27306673-27306411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):182, 59

               
               
               Conread position:236-511
               
               
               Cow position:chrX:36391954-36392234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):92, 109

               
               
               Conread position:236-528
               
               
               Cow position:chrX:40680848-40680549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 16

               
               
               Conread position:236-574
               
               
               Cow position:chrX:30337720-30338055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:234
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):88, 162

               
               
               Conread position:236-673
               
               
               Cow position:chrX:16763002-16762564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 85

               
               
               Conread position:236-673
               
               
               Cow position:chrX:34412083-34411632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 200

               
               
               Conread position:236-673
               
               
               Cow position:chrX:37489962-37489522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 13

               
               
               Conread position:236-673
               
               
               Cow position:chrX:45502369-45501940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 37

               
               
               Conread position:236-674
               
               
               Cow position:chrX:46532256-46532719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 206

               
               
               Conread position:237-422
               
               
               Cow position:chrX:27270602-27270420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):137, 43

               
               
               Conread position:237-468
               
               
               Cow position:chrX:29451313-29451544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):79, 16

               
               
               Conread position:237-476
               
               
               Cow position:chrX:16836062-16836297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):168, 12

               
               
               Conread position:237-492
               
               
               Cow position:chrX:41941856-41941599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):81, 60

               
               
               Conread position:237-506
               
               
               Cow position:chrX:19394788-19394511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 201

               
               
               Conread position:237-528
               
               
               Cow position:chrX:296625-296333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):89, 123

               
               
               Conread position:237-528
               
               
               Cow position:chrX:5134706-5134410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):66, 12

               
               
               Conread position:237-556
               
               
               Cow position:chrX:38560783-38560462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):181, 49

               
               
               Conread position:237-557
               
               
               Cow position:chrX:21328146-21327812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):91, 16

               
               
               Conread position:237-596
               
               
               Cow position:chrX:31729670-31729308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 82

               
               
               Conread position:237-623
               
               
               Cow position:chrX:36356337-36355957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 135

               
               
               Conread position:237-671
               
               
               Cow position:chrX:9201775-9201340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 12

               
               
               Conread position:237-671
               
               
               Cow position:chrX:41238129-41238572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 48

               
               
               Conread position:237-673
               
               
               Cow position:chrX:41674331-41673895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 37

               
               
               Conread position:237-673
               
               
               Cow position:chrX:42246947-42247392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 355

               
               
               Conread position:237-673
               
               
               Cow position:chrX:42380879-42381308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 36

               
               
               Conread position:237-674
               
               
               Cow position:chrX:25035150-25035597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 10

               
               
               Conread position:237-686
               
               
               Cow position:chrX:26493240-26492780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:308
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):89, 117

               
               
               Conread position:237-687
               
               
               Cow position:chrX:33466855-33466391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 36

               
               
               Conread position:237-696
               
               
               Cow position:chrX:36198207-36197732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:304
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):56, 12

               
               
               Conread position:238-408
               
               
               Cow position:chrX:10279106-10278930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):71, 14

               
               
               Conread position:238-409
               
               
               Cow position:chrX:14135907-14135737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:238-430
               
               
               Cow position:chrX:34991593-34991399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):180, 96

               
               
               Conread position:238-436
               
               
               Cow position:chrX:14925505-14925305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):84, 178

               
               
               Conread position:238-458
               
               
               Cow position:chrX:35285406-35285181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):88, 189

               
               
               Conread position:238-462
               
               
               Cow position:chrX:4559966-4559743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:176
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):77, 110

               
               
               Conread position:238-464
               
               
               Cow position:chrX:43008842-43008611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):81, 99

               
               
               Conread position:238-473
               
               
               Cow position:chrX:35276218-35275979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):93, 189

               
               
               Conread position:238-521
               
               
               Cow position:chrX:19469283-19469562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):176, 84

               
               
               Conread position:238-539
               
               
               Cow position:chrX:12095540-12095847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 14

               
               
               Conread position:238-572
               
               
               Cow position:chrX:17949261-17949601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):95, 14

               
               
               Conread position:238-577
               
               
               Cow position:chrX:24332008-24331662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):90, 11

               
               
               Conread position:238-600
               
               
               Cow position:chrX:37956076-37955694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:264
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):80, 16

               
               
               Conread position:238-605
               
               
               Cow position:chrX:44040408-44040047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:246
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):90, 14

               
               
               Conread position:238-633
               
               
               Cow position:chrX:22387012-22387416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 14

               
               
               Conread position:238-639
               
               
               Cow position:chrX:15231428-15231831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:267
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):77, 14

               
               
               Conread position:238-641
               
               
               Cow position:chrX:18486034-18485618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:269
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):93, 14

               
               
               Conread position:238-662
               
               
               Cow position:chrX:10251970-10252379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:290
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):183, 191

               
               
               Conread position:238-663
               
               
               Cow position:chrX:29544653-29545078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 39

               
               
               Conread position:238-667
               
               
               Cow position:chrX:152137-151699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 98

               
               
               Conread position:238-667
               
               
               Cow position:chrX:27442307-27442757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:304
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):80, 15

               
               
               Conread position:238-671
               
               
               Cow position:chrX:4632623-4633057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 14

               
               
               Conread position:238-672
               
               
               Cow position:chrX:3580176-3579737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 15

               
               
               Conread position:238-673
               
               
               Cow position:chrX:4268839-4269276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 15

               
               
               Conread position:238-673
               
               
               Cow position:chrX:13177253-13177673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 11

               
               
               Conread position:238-673
               
               
               Cow position:chrX:21672796-21672343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 125

               
               
               Conread position:238-673
               
               
               Cow position:chrX:27431692-27432127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 35

               
               
               Conread position:238-673
               
               
               Cow position:chrX:32330403-32329952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 99

               
               
               Conread position:238-674
               
               
               Cow position:chrX:41790196-41790654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 14

               
               
               Conread position:238-675
               
               
               Cow position:chrX:11633915-11633468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 200

               
               
               Conread position:238-675
               
               
               Cow position:chrX:31948702-31949141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 127

               
               
               Conread position:239-384
               
               
               Cow position:chrX:1996220-1996368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:239-387
               
               
               Cow position:chrX:35509449-35509598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:239-401
               
               
               Cow position:chrX:41215554-41215389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:239-422
               
               
               Cow position:chrX:8759854-8759672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):87, 143

               
               
               Conread position:239-422
               
               
               Cow position:chrX:17498554-17498367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:239-422
               
               
               Cow position:chrX:46910039-46909860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):61, 37

               
               
               Conread position:239-427
               
               
               Cow position:chrX:37751880-37752065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:239-431
               
               
               Cow position:chrX:2314387-2314585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):87, 121

               
               
               Conread position:239-434
               
               
               Cow position:chrX:1960194-1960392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):75, 97

               
               
               Conread position:239-442
               
               
               Cow position:chrX:32867101-32866899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):175, 71

               
               
               Conread position:239-446
               
               
               Cow position:chrX:28068082-28067870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):70, 188

               
               
               Conread position:239-459
               
               
               Cow position:chrX:19717742-19717529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):190, 34

               
               
               Conread position:239-464
               
               
               Cow position:chrX:24170494-24170727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):79, 126

               
               
               Conread position:239-467
               
               
               Cow position:chrX:42449782-42450015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):89, 183

               
               
               Conread position:239-468
               
               
               Cow position:chrX:42331503-42331276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):178, 10

               
               
               Conread position:239-473
               
               
               Cow position:chrX:35659025-35658794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):81, 34

               
               
               Conread position:239-539
               
               
               Cow position:chrX:48071393-48071087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):94, 286

               
               
               Conread position:239-549
               
               
               Cow position:chrX:33654612-33654924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:224
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):79, 195

               
               
               Conread position:239-584
               
               
               Cow position:chrX:18111610-18111267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):80, 124

               
               
               Conread position:239-605
               
               
               Cow position:chrX:5118267-5118646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 267

               
               
               Conread position:239-625
               
               
               Cow position:chrX:869951-870330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):92, 123

               
               
               Conread position:239-637
               
               
               Cow position:chrX:35885502-35885902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 13

               
               
               Conread position:239-669
               
               
               Cow position:chrX:27705818-27705385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 47

               
               
               Conread position:239-671
               
               
               Cow position:chrX:33001129-33000697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 83

               
               
               Conread position:239-671
               
               
               Cow position:chrX:46588051-46587611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 58

               
               
               Conread position:239-672
               
               
               Cow position:chrX:9251932-9252385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 198

               
               
               Conread position:239-672
               
               
               Cow position:chrX:48010836-48010387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:288
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):99, 124

               
               
               Conread position:239-673
               
               
               Cow position:chrX:12979604-12980039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 96

               
               
               Conread position:239-673
               
               
               Cow position:chrX:29601597-29602039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 97

               
               
               Conread position:239-673
               
               
               Cow position:chrX:40826519-40826955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:304
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):111, 203

               
               
               Conread position:239-673
               
               
               Cow position:chrX:44192211-44192651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:304
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):54, 199

               
               
               Conread position:239-674
               
               
               Cow position:chrX:38094295-38094735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 37

               
               
               Conread position:239-675
               
               
               Cow position:chrX:17231968-17231524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 294

               
               
               Conread position:239-675
               
               
               Cow position:chrX:23563559-23564007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 46

               
               
               Conread position:239-675
               
               
               Cow position:chrX:27175231-27174784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 188

               
               
               Conread position:239-675
               
               
               Cow position:chrX:30133093-30133534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 37

               
               
               Conread position:239-675
               
               
               Cow position:chrX:30962644-30963082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 45

               
               
               Conread position:239-675
               
               
               Cow position:chrX:32019902-32020332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:300
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):59, 46

               
               
               Conread position:239-675
               
               
               Cow position:chrX:38935510-38935071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 132

               
               
               Conread position:240-379
               
               
               Cow position:chrX:3494820-3494958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:240-386
               
               
               Cow position:chrX:43028459-43028314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:240-392
               
               
               Cow position:chrX:1571365-1571513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):7, 68

               
               
               Conread position:240-392
               
               
               Cow position:chrX:4486794-4486948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:240-405
               
               
               Cow position:chrX:40556232-40556396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):8, 81

               
               
               Conread position:240-408
               
               
               Cow position:chrX:231796-231958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:240-416
               
               
               Cow position:chrX:41166599-41166773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:240-418
               
               
               Cow position:chrX:42760483-42760302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:240-421
               
               
               Cow position:chrX:6389309-6389127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):86, 141

               
               
               Conread position:240-422
               
               
               Cow position:chrX:5097564-5097754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):85, 26

               
               
               Conread position:240-422
               
               
               Cow position:chrX:23136961-23136785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):62, 39

               
               
               Conread position:240-426
               
               
               Cow position:chrX:40649132-40648935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:240-449
               
               
               Cow position:chrX:47855207-47854998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):174, 88

               
               
               Conread position:240-452
               
               
               Cow position:chrX:23089065-23088870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):188, 29

               
               
               Conread position:240-465
               
               
               Cow position:chrX:2936183-2935958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):178, 87

               
               
               Conread position:240-469
               
               
               Cow position:chrX:32910327-32910101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):77, 86

               
               
               Conread position:240-475
               
               
               Cow position:chrX:43150660-43150418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):88, 12

               
               
               Conread position:240-489
               
               
               Cow position:chrX:3806908-3806663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:189
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):178, 70

               
               
               Conread position:240-500
               
               
               Cow position:chrX:17956919-17956660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:192
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):86, 154

               
               
               Conread position:240-503
               
               
               Cow position:chrX:6599544-6599822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):55, 205

               
               
               Conread position:240-505
               
               
               Cow position:chrX:24749317-24749047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):95, 178

               
               
               Conread position:240-528
               
               
               Cow position:chrX:13122173-13121868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):85, 12

               
               
               Conread position:240-528
               
               
               Cow position:chrX:25037222-25036925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):72, 191

               
               
               Conread position:240-538
               
               
               Cow position:chrX:1466393-1466088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 198

               
               
               Conread position:240-539
               
               
               Cow position:chrX:36866403-36866097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):86, 126

               
               
               Conread position:240-540
               
               
               Cow position:chrX:47345560-47345259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):80, 200

               
               
               Conread position:240-574
               
               
               Cow position:chrX:29230237-29229896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:252
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):71, 204

               
               
               Conread position:240-574
               
               
               Cow position:chrX:39353002-39352674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:236
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):183, 69

               
               
               Conread position:240-575
               
               
               Cow position:chrX:42927600-42927933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:243
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):178, 46

               
               
               Conread position:240-581
               
               
               Cow position:chrX:26881332-26881688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 49

               
               
               Conread position:240-591
               
               
               Cow position:chrX:43115380-43115021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 191

               
               
               Conread position:240-597
               
               
               Cow position:chrX:45977154-45976784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 40

               
               
               Conread position:240-630
               
               
               Cow position:chrX:27145829-27145458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 80

               
               
               Conread position:240-663
               
               
               Cow position:chrX:38218943-38218508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 88

               
               
               Conread position:240-666
               
               
               Cow position:chrX:1499884-1499468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 70

               
               
               Conread position:240-670
               
               
               Cow position:chrX:37780882-37781321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 44

               
               
               Conread position:240-670
               
               
               Cow position:chrX:39938308-39938728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 66

               
               
               Conread position:240-672
               
               
               Cow position:chrX:14883727-14884169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 95

               
               
               Conread position:240-672
               
               
               Cow position:chrX:23497467-23497872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):290, 79

               
               
               Conread position:240-673
               
               
               Cow position:chrX:11656308-11655880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 93

               
               
               Conread position:240-673
               
               
               Cow position:chrX:22075025-22074592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 31

               
               
               Conread position:240-673
               
               
               Cow position:chrX:27393788-27394222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 33

               
               
               Conread position:240-673
               
               
               Cow position:chrX:35413824-35413424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):229, 36

               
               
               Conread position:240-673
               
               
               Cow position:chrX:40035212-40035653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 17

               
               
               Conread position:240-673
               
               
               Cow position:chrX:42994826-42994406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 75

               
               
               Conread position:240-673
               
               
               Cow position:chrX:45429801-45430225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 14

               
               
               Conread position:240-673
               
               
               Cow position:chrX:45598378-45598812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 93

               
               
               Conread position:240-673
               
               
               Cow position:chrX:46072600-46073029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 45

               
               
               Conread position:240-674
               
               
               Cow position:chrX:15146969-15147396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 36

               
               
               Conread position:240-674
               
               
               Cow position:chrX:24365592-24366041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:301
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):91, 137

               
               
               Conread position:240-674
               
               
               Cow position:chrX:34377169-34376747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:295
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):178, 94

               
               
               Conread position:240-674
               
               
               Cow position:chrX:34441222-34441660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 184

               
               
               Conread position:240-674
               
               
               Cow position:chrX:37072616-37072196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 87

               
               
               Conread position:240-674
               
               
               Cow position:chrX:41123275-41122862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 46

               
               
               Conread position:240-674
               
               
               Cow position:chrX:42492291-42492724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 115

               
               
               Conread position:240-675
               
               
               Cow position:chrX:6544475-6544046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 70

               
               
               Conread position:240-675
               
               
               Cow position:chrX:7646468-7646048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:308
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):8, 69

               
               
               Conread position:240-675
               
               
               Cow position:chrX:34454888-34454459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:290
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):99, 13

               
               
               Conread position:240-691
               
               
               Cow position:chrX:12437053-12437466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:303
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):173, 46

               
               
               Conread position:241-387
               
               
               Cow position:chrX:35029708-35029845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:241-405
               
               
               Cow position:chrX:11529567-11529406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:241-408
               
               
               Cow position:chrX:11589138-11589307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:241-422
               
               
               Cow position:chrX:34270790-34270608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):87, 61

               
               
               Conread position:241-460
               
               
               Cow position:chrX:19018599-19018825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):71, 199

               
               
               Conread position:241-463
               
               
               Cow position:chrX:31744786-31745002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):174, 63

               
               
               Conread position:241-468
               
               
               Cow position:chrX:23335747-23335974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):77, 12

               
               
               Conread position:241-468
               
               
               Cow position:chrX:38587616-38587845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):85, 28

               
               
               Conread position:241-475
               
               
               Cow position:chrX:45699751-45699980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):176, 69

               
               
               Conread position:241-477
               
               
               Cow position:chrX:38968124-38967877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):66, 160

               
               
               Conread position:241-514
               
               
               Cow position:chrX:22392759-22393035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:203
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):172, 93

               
               
               Conread position:241-580
               
               
               Cow position:chrX:4403547-4403195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:234
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):85, 262

               
               
               Conread position:241-592
               
               
               Cow position:chrX:42855691-42855321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 8

               
               
               Conread position:241-600
               
               
               Cow position:chrX:18204237-18204602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:254
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):59, 32

               
               
               Conread position:241-670
               
               
               Cow position:chrX:34565514-34565088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 99

               
               
               Conread position:241-672
               
               
               Cow position:chrX:33854997-33855440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 32

               
               
               Conread position:241-673
               
               
               Cow position:chrX:6414261-6413838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):286, 40

               
               
               Conread position:241-673
               
               
               Cow position:chrX:6674706-6675133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:288
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):78, 71

               
               
               Conread position:241-673
               
               
               Cow position:chrX:13913303-13912872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 9

               
               
               Conread position:241-673
               
               
               Cow position:chrX:34532739-34532320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 8

               
               
               Conread position:241-674
               
               
               Cow position:chrX:12290948-12290526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 185

               
               
               Conread position:242-382
               
               
               Cow position:chrX:40108116-40108257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):97, 86

               
               
               Conread position:242-385
               
               
               Cow position:chrX:31279699-31279841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:242-386
               
               
               Cow position:chrX:42506718-42506867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:242-411
               
               
               Cow position:chrX:17525649-17525810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:242-420
               
               
               Cow position:chrX:51674-51853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:242-422
               
               
               Cow position:chrX:35409980-35409797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):84, 124

               
               
               Conread position:242-422
               
               
               Cow position:chrX:42875437-42875257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):173, 85

               
               
               Conread position:242-427
               
               
               Cow position:chrX:16555995-16556176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):58, 43

               
               
               Conread position:242-447
               
               
               Cow position:chrX:5026479-5026275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):35, 86

               
               
               Conread position:242-447
               
               
               Cow position:chrX:28940472-28940261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):78, 193

               
               
               Conread position:242-455
               
               
               Cow position:chrX:19356693-19356480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):5, 149

               
               
               Conread position:242-462
               
               
               Cow position:chrX:32942852-32943072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):90, 32

               
               
               Conread position:242-463
               
               
               Cow position:chrX:17524155-17524381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):86, 196

               
               
               Conread position:242-471
               
               
               Cow position:chrX:42480055-42479828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):36, 27

               
               
               Conread position:242-474
               
               
               Cow position:chrX:11762783-11763007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):182, 79

               
               
               Conread position:242-474
               
               
               Cow position:chrX:12972906-12972673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):129, 85

               
               
               Conread position:242-474
               
               
               Cow position:chrX:30672156-30672404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):76, 203

               
               
               Conread position:242-475
               
               
               Cow position:chrX:16984863-16984632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:185
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):172, 72

               
               
               Conread position:242-503
               
               
               Cow position:chrX:42894150-42893879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:201
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):176, 43

               
               
               Conread position:242-521
               
               
               Cow position:chrX:4109413-4109134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):86, 180

               
               
               Conread position:242-535
               
               
               Cow position:chrX:4152816-4153105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:224
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):175, 74

               
               
               Conread position:242-589
               
               
               Cow position:chrX:34315755-34315396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 199

               
               
               Conread position:242-607
               
               
               Cow position:chrX:34314249-34313887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 92

               
               
               Conread position:242-617
               
               
               Cow position:chrX:20584540-20584166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 68

               
               
               Conread position:242-659
               
               
               Cow position:chrX:11938726-11939121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 10

               
               
               Conread position:242-663
               
               
               Cow position:chrX:44055031-44054603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 185

               
               
               Conread position:242-671
               
               
               Cow position:chrX:38964325-38963900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 43

               
               
               Conread position:242-672
               
               
               Cow position:chrX:31442611-31443029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 71

               
               
               Conread position:242-673
               
               
               Cow position:chrX:27446911-27446480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 86

               
               
               Conread position:242-675
               
               
               Cow position:chrX:161628-161218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:311
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):79, 31

               
               
               Conread position:242-676
               
               
               Cow position:chrX:45110879-45110444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 71

               
               
               Conread position:243-439
               
               
               Cow position:chrX:5487721-5487906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:243-512
               
               
               Cow position:chrX:36367707-36367989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):83, 106

               
               
               Conread position:243-567
               
               
               Cow position:chrX:13924088-13923765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):172, 91

               
               
               Conread position:244-431
               
               
               Cow position:chrX:35681793-35681604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):84, 182

               
               
               Conread position:245-420
               
               
               Cow position:chrX:6640649-6640474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):83, 106

               
               
               Conread position:245-438
               
               
               Cow position:chrX:8327130-8326931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:245-461
               
               
               Cow position:chrX:1122322-1122538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):62, 22

               
               
               Conread position:245-478
               
               
               Cow position:chrX:27074826-27075065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):75, 196

               
               
               Conread position:245-528
               
               
               Cow position:chrX:20881736-20881999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):229, 75

               
               
               Conread position:245-605
               
               
               Cow position:chrX:21986076-21986436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 62

               
               
               Conread position:245-653
               
               
               Cow position:chrX:35382817-35383208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 62

               
               
               Conread position:245-667
               
               
               Cow position:chrX:1175765-1176185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 92

               
               
               Conread position:245-670
               
               
               Cow position:chrX:22482464-22482894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 264

               
               
               Conread position:245-671
               
               
               Cow position:chrX:7278131-7277713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 64

               
               
               Conread position:245-671
               
               
               Cow position:chrX:38642467-38642051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 38

               
               
               Conread position:245-673
               
               
               Cow position:chrX:40567830-40567391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 73

               
               
               Conread position:245-674
               
               
               Cow position:chrX:42011486-42011070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:298
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):179, 62

               
               
               Conread position:245-675
               
               
               Cow position:chrX:17795204-17794775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 16

               
               
               Conread position:246-383
               
               
               Cow position:chrX:27202793-27202655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:246-414
               
               
               Cow position:chrX:26881855-26882026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:246-417
               
               
               Cow position:chrX:12967-12801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:246-423
               
               
               Cow position:chrX:47191098-47191275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:246-425
               
               
               Cow position:chrX:41858660-41858842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):101, 86

               
               
               Conread position:246-461
               
               
               Cow position:chrX:19761973-19761759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):183, 63

               
               
               Conread position:246-468
               
               
               Cow position:chrX:29478946-29478722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):83, 189

               
               
               Conread position:246-475
               
               
               Cow position:chrX:4467175-4466958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):172, 72

               
               
               Conread position:246-520
               
               
               Cow position:chrX:44339097-44339379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):80, 25

               
               
               Conread position:246-559
               
               
               Cow position:chrX:10516478-10516158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:228
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):72, 176

               
               
               Conread position:246-574
               
               
               Cow position:chrX:38654208-38654543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):61, 157

               
               
               Conread position:246-597
               
               
               Cow position:chrX:41871281-41870937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 40

               
               
               Conread position:246-659
               
               
               Cow position:chrX:41526310-41526718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):238, 38

               
               
               Conread position:246-672
               
               
               Cow position:chrX:7695987-7695552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:316
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):49, 115

               
               
               Conread position:246-674
               
               
               Cow position:chrX:35224500-35224092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 61

               
               
               Conread position:249-422
               
               
               Cow position:chrX:45759890-45759716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):41, 80

               
               
               Conread position:249-657
               
               
               Cow position:chrX:8869183-8869601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 83

               
               
               Conread position:249-673
               
               
               Cow position:chrX:31436690-31436273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 71

               
               
               Conread position:250-452
               
               
               Cow position:chrX:29467562-29467764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):164, 68

               
               
               Conread position:250-452
               
               
               Cow position:chrX:41862575-41862378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):167, 24

               
               
               Conread position:250-461
               
               
               Cow position:chrX:46068544-46068754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):169, 10

               
               
               Conread position:250-593
               
               
               Cow position:chrX:40685109-40685463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 85

               
               
               Conread position:250-605
               
               
               Cow position:chrX:29723971-29723597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:261
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):68, 100

               
               
               Conread position:251-427
               
               
               Cow position:chrX:37867652-37867473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):75, 103

               
               
               Conread position:251-474
               
               
               Cow position:chrX:14985943-14986158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):75, 48

               
               
               Conread position:251-501
               
               
               Cow position:chrX:4645695-4645948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):41, 47

               
               
               Conread position:251-591
               
               
               Cow position:chrX:45875609-45875261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):77, 25

               
               
               Conread position:251-673
               
               
               Cow position:chrX:9650808-9651254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 82

               
               
               Conread position:251-677
               
               
               Cow position:chrX:20152067-20151637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 56

               
               
               Conread position:252-417
               
               
               Cow position:chrX:44995718-44995549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:252-552
               
               
               Cow position:chrX:29050460-29050156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:222
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):216, 26

               
               
               Conread position:253-449
               
               
               Cow position:chrX:20345668-20345470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):73, 174

               
               
               Conread position:253-467
               
               
               Cow position:chrX:34420953-34420733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):42, 80

               
               
               Conread position:253-592
               
               
               Cow position:chrX:34504836-34505178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 80

               
               
               Conread position:253-637
               
               
               Cow position:chrX:6407761-6407376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 144

               
               
               Conread position:253-645
               
               
               Cow position:chrX:32821257-32820849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 180

               
               
               Conread position:253-670
               
               
               Cow position:chrX:9634975-9635386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 24

               
               
               Conread position:253-675
               
               
               Cow position:chrX:14973540-14973946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 54

               
               
               Conread position:254-417
               
               
               Cow position:chrX:10237697-10237862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:254-437
               
               
               Cow position:chrX:48822126-48822314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:254-460
               
               
               Cow position:chrX:41809959-41810161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):164, 64

               
               
               Conread position:254-541
               
               
               Cow position:chrX:38208338-38208619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:209
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):91, 31

               
               
               Conread position:254-594
               
               
               Cow position:chrX:30840757-30840423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:249
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):164, 70

               
               
               Conread position:254-605
               
               
               Cow position:chrX:27228345-27227979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 175

               
               
               Conread position:254-664
               
               
               Cow position:chrX:7337063-7336629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:275
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):20, 260

               
               
               Conread position:254-665
               
               
               Cow position:chrX:43779649-43780053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 31

               
               
               Conread position:254-672
               
               
               Cow position:chrX:10831265-10831704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 125

               
               
               Conread position:254-673
               
               
               Cow position:chrX:1615842-1616256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 31

               
               
               Conread position:254-674
               
               
               Cow position:chrX:15597244-15596828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:281
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):79, 104

               
               
               Conread position:256-526
               
               
               Cow position:chrX:27511635-27511367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):160, 51

               
               
               Conread position:256-539
               
               
               Cow position:chrX:23113506-23113204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):37, 284

               
               
               Conread position:256-559
               
               
               Cow position:chrX:46291355-46291040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):129, 77

               
               
               Conread position:257-373
               
               
               Cow position:chrX:4366558-4366441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:95
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):59, 73

               
               
               Conread position:257-434
               
               
               Cow position:chrX:5876316-5876138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):157, 28

               
               
               Conread position:257-452
               
               
               Cow position:chrX:30824198-30824001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):161, 69

               
               
               Conread position:257-557
               
               
               Cow position:chrX:34836859-34837150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):161, 16

               
               
               Conread position:257-641
               
               
               Cow position:chrX:4278906-4279291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:259
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):31, 19

               
               
               Conread position:257-672
               
               
               Cow position:chrX:32420424-32420011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 28

               
               
               Conread position:257-672
               
               
               Cow position:chrX:34503132-34502711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 69

               
               
               Conread position:257-673
               
               
               Cow position:chrX:4768941-4768542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):227, 65

               
               
               Conread position:257-673
               
               
               Cow position:chrX:28877953-28878368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:308
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):63, 188

               
               
               Conread position:257-675
               
               
               Cow position:chrX:34543999-34543577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 31

               
               
               Conread position:258-521
               
               
               Cow position:chrX:1360294-1360030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):157, 65

               
               
               Conread position:258-550
               
               
               Cow position:chrX:31515383-31515085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):154, 51

               
               
               Conread position:258-588
               
               
               Cow position:chrX:34222926-34222586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):11, 118

               
               
               Conread position:258-673
               
               
               Cow position:chrX:126968-126584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:288
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):222, 27

               
               
               Conread position:258-674
               
               
               Cow position:chrX:12309173-12309599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 164

               
               
               Conread position:258-674
               
               
               Cow position:chrX:34238935-34238511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 179

               
               
               Conread position:258-678
               
               
               Cow position:chrX:8731306-8730866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 105

               
               
               Conread position:259-392
               
               
               Cow position:chrX:43059045-43059175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:259-674
               
               
               Cow position:chrX:13868915-13868484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:299
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):51, 171

               
               
               Conread position:259-675
               
               
               Cow position:chrX:36976163-36975739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 170

               
               
               Conread position:260-675
               
               
               Cow position:chrX:35543094-35542681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 73

               
               
               Conread position:261-466
               
               
               Cow position:chrX:29501676-29501881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):42, 10

               
               
               Conread position:261-592
               
               
               Cow position:chrX:31294360-31294688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 184

               
               
               Conread position:261-671
               
               
               Cow position:chrX:22822264-22821841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:294
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):34, 169

               
               
               Conread position:262-610
               
               
               Cow position:chrX:47165676-47166036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:238
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):88, 166

               
               
               Conread position:262-628
               
               
               Cow position:chrX:41068928-41068564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 63

               
               
               Conread position:262-673
               
               
               Cow position:chrX:3130774-3130373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:274
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):154, 29

               
               
               Conread position:262-673
               
               
               Cow position:chrX:17662393-17662805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 5

               
               
               Conread position:263-509
               
               
               Cow position:chrX:48120998-48121243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):165, 47

               
               
               Conread position:264-673
               
               
               Cow position:chrX:23513801-23514226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 181

               
               
               Conread position:268-572
               
               
               Cow position:chrX:29194429-29194123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):10, 26

               
               
               Conread position:269-597
               
               
               Cow position:chrX:32431829-32431491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):20, 172

               
               
               Conread position:271-639
               
               
               Cow position:chrX:14275549-14275911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:261
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):146, 49

               
               
               Conread position:272-567
               
               
               Cow position:chrX:169343-169646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:217
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):54, 169

               
               
               Conread position:272-673
               
               
               Cow position:chrX:13647586-13647992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 65

               
               
               Conread position:276-471
               
               
               Cow position:chrX:39180039-39180239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):52, 96

               
               
               Conread position:277-478
               
               
               Cow position:chrX:23188596-23188793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):191, 43

               
               
               Conread position:279-650
               
               
               Cow position:chrX:31252599-31252230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 101

               
               
               Conread position:280-570
               
               
               Cow position:chrX:4515878-4515577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:226
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):61, 48

               
               
               Conread position:287-448
               
               
               Cow position:chrX:28098511-28098344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):33, 152

               
               
               Conread position:292-643
               
               
               Cow position:chrX:24287755-24288111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:254
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):36, 134

               
               
               Conread position:297-673
               
               
               Cow position:chrX:43527678-43527295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 40

               
               
               Conread position:298-675
               
               
               Cow position:chrX:34402175-34401787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 35

               
               
               Conread position:301-528
               
               
               Cow position:chrX:16575282-16575061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):25, 175

               
               
               Conread position:301-675
               
               
               Cow position:chrX:5900627-5900247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 10

               
               
               Conread position:301-675
               
               
               Cow position:chrX:15815249-15814887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:266
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):7, 38

               
               
               Conread position:302-468
               
               
               Cow position:chrX:38722286-38722119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):116, 15

               
               
               Conread position:302-597
               
               
               Cow position:chrX:7710372-7710679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):9, 34

               
               
               Conread position:302-671
               
               
               Cow position:chrX:10959227-10959607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 138

               
               
               Conread position:302-673
               
               
               Cow position:chrX:6265436-6265794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:254
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):128, 19

               
               
               Conread position:302-673
               
               
               Cow position:chrX:20801932-20801571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:256
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):115, 14

               
               
               Conread position:302-673
               
               
               Cow position:chrX:38006603-38006976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 34

               
               
               Conread position:302-674
               
               
               Cow position:chrX:11082457-11082823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 12

               
               
               Conread position:302-674
               
               
               Cow position:chrX:19930812-19930446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:257
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):14, 74

               
               
               Conread position:305-504
               
               
               Cow position:chrX:29553450-29553246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):24, 122

               
               
               Conread position:306-522
               
               
               Cow position:chrX:32977921-32978134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):20, 41

               
               
               Conread position:306-543
               
               
               Cow position:chrX:19097059-19097300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):113, 30

               
               
               Conread position:308-468
               
               
               Cow position:chrX:6222968-6223130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):111, 116

               
               
               Conread position:308-521
               
               
               Cow position:chrX:31626818-31627037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):158, 94

               
               
               Conread position:308-673
               
               
               Cow position:chrX:16416657-16416300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 19

               
               
               Conread position:308-691
               
               
               Cow position:chrX:6690099-6690475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 117

               
               
               Conread position:310-472
               
               
               Cow position:chrX:12191917-12191754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):105, 23

               
               
               Conread position:310-494
               
               
               Cow position:chrX:36848422-36848608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):104, 23

               
               
               Conread position:310-539
               
               
               Cow position:chrX:16348414-16348642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):159, 36

               
               
               Conread position:310-539
               
               
               Cow position:chrX:37129424-37129195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):107, 14

               
               
               Conread position:310-557
               
               
               Cow position:chrX:41270827-41271087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):25, 126

               
               
               Conread position:310-600
               
               
               Cow position:chrX:616101-616401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 130

               
               
               Conread position:310-602
               
               
               Cow position:chrX:9365517-9365815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:218
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):16, 129

               
               
               Conread position:310-605
               
               
               Cow position:chrX:29680103-29680404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 128

               
               
               Conread position:310-608
               
               
               Cow position:chrX:38226951-38227242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):16, 55

               
               
               Conread position:310-652
               
               
               Cow position:chrX:42235366-42235721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 217

               
               
               Conread position:310-655
               
               
               Cow position:chrX:23785805-23785463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:243
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):45, 73

               
               
               Conread position:310-656
               
               
               Cow position:chrX:43730065-43730406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 110

               
               
               Conread position:310-670
               
               
               Cow position:chrX:17726133-17725769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 120

               
               
               Conread position:310-671
               
               
               Cow position:chrX:11717626-11717989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 23

               
               
               Conread position:310-673
               
               
               Cow position:chrX:618851-619216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 65

               
               
               Conread position:310-673
               
               
               Cow position:chrX:27516675-27516324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):160, 30

               
               
               Conread position:310-673
               
               
               Cow position:chrX:40269651-40269268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 127

               
               
               Conread position:310-673
               
               
               Cow position:chrX:40480708-40481080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 40

               
               
               Conread position:310-674
               
               
               Cow position:chrX:878223-878581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 23

               
               
               Conread position:310-692
               
               
               Cow position:chrX:13382482-13382096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 36

               
               
               Conread position:311-539
               
               
               Cow position:chrX:23562788-23562561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):112, 22

               
               
               Conread position:311-649
               
               
               Cow position:chrX:36068173-36067835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 13

               
               
               Conread position:311-673
               
               
               Cow position:chrX:33640131-33639763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 22

               
               
               Conread position:311-673
               
               
               Cow position:chrX:41884256-41884626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 27

               
               
               Conread position:311-674
               
               
               Cow position:chrX:8797405-8797038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 22

               
               
               Conread position:311-675
               
               
               Cow position:chrX:9416526-9416903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 40

               
               
               Conread position:312-674
               
               
               Cow position:chrX:28134497-28134136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 73

               
               
               Conread position:313-468
               
               
               Cow position:chrX:25412059-25411905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):106, 20

               
               
               Conread position:313-469
               
               
               Cow position:chrX:40531889-40532046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):101, 20

               
               
               Conread position:313-478
               
               
               Cow position:chrX:18046550-18046388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):153, 20

               
               
               Conread position:313-673
               
               
               Cow position:chrX:23092027-23091673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 128

               
               
               Conread position:314-452
               
               
               Cow position:chrX:23266569-23266429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):102, 121

               
               
               Conread position:314-475
               
               
               Cow position:chrX:42160776-42160618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):92, 20

               
               
               Conread position:314-633
               
               
               Cow position:chrX:45099283-45098943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):12, 125

               
               
               Conread position:314-655
               
               
               Cow position:chrX:31312182-31311835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 19

               
               
               Conread position:314-672
               
               
               Cow position:chrX:4043714-4044058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 20

               
               
               Conread position:314-672
               
               
               Cow position:chrX:28865852-28866200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 99

               
               
               Conread position:314-673
               
               
               Cow position:chrX:20697454-20697816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:260
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):14, 111

               
               
               Conread position:314-673
               
               
               Cow position:chrX:40557523-40557884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 122

               
               
               Conread position:315-590
               
               
               Cow position:chrX:38728886-38728608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):100, 12

               
               
               Conread position:316-579
               
               
               Cow position:chrX:5679421-5679684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):91, 17

               
               
               Conread position:316-604
               
               
               Cow position:chrX:11614847-11614556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:217
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):14, 80

               
               
               Conread position:317-638
               
               
               Cow position:chrX:46433642-46433309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:235
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):7, 18

               
               
               Conread position:319-674
               
               
               Cow position:chrX:30543133-30543496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 118

               
               
               Conread position:320-547
               
               
               Cow position:chrX:6463745-6463528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):159, 13

               
               
               Conread position:320-675
               
               
               Cow position:chrX:45414156-45414510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):98, 115

               
               
               Conread position:321-673
               
               
               Cow position:chrX:7572052-7571698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 12

               
               
               Conread position:321-673
               
               
               Cow position:chrX:32623716-32623374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 23

               
               
               Conread position:321-674
               
               
               Cow position:chrX:33493923-33493565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 110

               
               
               Conread position:325-673
               
               
               Cow position:chrX:29289720-29289368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:242
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):94, 31

               
               
               Conread position:326-597
               
               
               Cow position:chrX:37986367-37986097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):88, 68

               
               
               Conread position:327-518
               
               
               Cow position:chrX:25328475-25328659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):90, 110

               
               
               Conread position:328-492
               
               
               Cow position:chrX:20743744-20743575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):87, 96

               
               
               Conread position:328-539
               
               
               Cow position:chrX:46429679-46429894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):90, 107

               
               
               Conread position:328-673
               
               
               Cow position:chrX:45846241-45845887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 103

               
               
               Conread position:329-514
               
               
               Cow position:chrX:19943097-19943286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):99, 60

               
               
               Conread position:329-579
               
               
               Cow position:chrX:36514753-36515008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):73, 110

               
               
               Conread position:329-675
               
               
               Cow position:chrX:37119731-37119389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):155, 15

               
               
               Conread position:329-676
               
               
               Cow position:chrX:11073052-11073401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 106

               
               
               Conread position:330-559
               
               
               Cow position:chrX:48044378-48044612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):94, 23

               
               
               Conread position:330-670
               
               
               Cow position:chrX:29121185-29120851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:250
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):85, 194

               
               
               Conread position:331-670
               
               
               Cow position:chrX:10411847-10412195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 138

               
               
               Conread position:336-509
               
               
               Cow position:chrX:29585251-29585076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):78, 99

               
               
               Conread position:337-472
               
               
               Cow position:chrX:46070037-46070178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):38, 104

               
               
               Conread position:337-531
               
               
               Cow position:chrX:12082193-12082391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):73, 80

               
               
               Conread position:337-594
               
               
               Cow position:chrX:7162187-7161927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):193, 98

               
               
               Conread position:337-614
               
               
               Cow position:chrX:38066324-38066602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):81, 97

               
               
               Conread position:337-673
               
               
               Cow position:chrX:37574971-37574648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:240
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):80, 97

               
               
               Conread position:337-673
               
               
               Cow position:chrX:42469810-42470145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 95

               
               
               Conread position:337-673
               
               
               Cow position:chrX:43568050-43567731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:247
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):79, 101

               
               
               Conread position:337-673
               
               
               Cow position:chrX:47481927-47481591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:238
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):190, 76

               
               
               Conread position:339-675
               
               
               Cow position:chrX:39558220-39558558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 43

               
               
               Conread position:340-526
               
               
               Cow position:chrX:13359301-13359480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:340-604
               
               
               Cow position:chrX:19273579-19273867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):74, 95

               
               
               Conread position:340-672
               
               
               Cow position:chrX:11454921-11455260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:236
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):79, 42

               
               
               Conread position:344-674
               
               
               Cow position:chrX:17964398-17964732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):74, 80

               
               
               Conread position:344-717
               
               
               Cow position:chrX:37910569-37910201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 91

               
               
               Conread position:348-673
               
               
               Cow position:chrX:11856550-11856221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 170

               
               
               Conread position:352-673
               
               
               Cow position:chrX:26625555-26625885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 67

               
               
               Conread position:354-567
               
               
               Cow position:chrX:44837090-44836880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):112, 75

               
               
               Conread position:354-663
               
               
               Cow position:chrX:47300789-47301102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):63, 70

               
               
               Conread position:354-664
               
               
               Cow position:chrX:45149282-45148975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:210
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):63, 70

               
               
               Conread position:354-672
               
               
               Cow position:chrX:43049445-43049137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 62

               
               
               Conread position:354-673
               
               
               Cow position:chrX:45089560-45089235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):63, 72

               
               
               Conread position:354-673
               
               
               Cow position:chrX:45403711-45404042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):75, 96

               
               
               Conread position:354-674
               
               
               Cow position:chrX:48652607-48652937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):75, 154

               
               
               Conread position:354-675
               
               
               Cow position:chrX:46722620-46722951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 169

               
               
               Conread position:354-675
               
               
               Cow position:chrX:48194921-48195251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):63, 70

               
               
               Conread position:355-608
               
               
               Cow position:chrX:48243362-48243608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):130, 32

               
               
               Conread position:355-610
               
               
               Cow position:chrX:48570875-48571142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):75, 171

               
               
               Conread position:355-675
               
               
               Cow position:chrX:47967720-47967389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:235
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):62, 69

               
               
               Conread position:359-672
               
               
               Cow position:chrX:27680507-27680194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 240

               
               
               Conread position:368-607
               
               
               Cow position:chrX:27685349-27685101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):23, 52

               
               
               Conread position:377-673
               
               
               Cow position:chrX:7497334-7497035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):42, 61

               
               
               Conread position:378-613
               
               
               Cow position:chrX:12405291-12405539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):47, 41

               
               
               Conread position:379-535
               
               
               Cow position:chrX:1572050-1572207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):45, 40

               
               
               Conread position:381-630
               
               
               Cow position:chrX:48385276-48385529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):35, 44

               
               
               Conread position:387-674
               
               
               Cow position:chrX:11589507-11589802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:219
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):37, 32

               
               
               Conread position:390-587
               
               
               Cow position:chrX:19003371-19003174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):77, 25

               
               
               Conread position:399-574
               
               
               Cow position:chrX:20790982-20790808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):36, 20

               
               
               Conread position:399-651
               
               
               Cow position:chrX:48035494-48035241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):25, 21

               
               
               Conread position:399-672
               
               
               Cow position:chrX:26875812-26876089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 39

               
               
               Conread position:401-674
               
               
               Cow position:chrX:14900666-14900931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):24, 18

               
               
               Conread position:401-687
               
               
               Cow position:chrX:20752319-20752037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):33, 39

               
               
               Conread position:403-671
               
               
               Cow position:chrX:19188996-19188730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):21, 16

               
               
               Conread position:404-662
               
               
               Cow position:chrX:36961701-36961438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 11

               
               
               Conread position:405-673
               
               
               Cow position:chrX:47191347-47191607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):57, 30

               
               
               Conread position:408-670
               
               
               Cow position:chrX:41166902-41167170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 11

               
               
               Conread position:411-669
               
               
               Cow position:chrX:34270461-34270201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):7, 63

               
               
               Conread position:411-671
               
               
               Cow position:chrX:42461690-42461952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):73, 25

               
               
               Conread position:415-672
               
               
               Cow position:chrX:28845885-28845638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):15, 9

               
               
               Conread position:415-673
               
               
               Cow position:chrX:12018344-12018067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):15, 9

               
               
               Conread position:415-674
               
               
               Cow position:chrX:42875035-42874768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 105

               
               
               Conread position:416-693
               
               
               Cow position:chrX:23970432-23970160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):19, 106

               
               
               Conread position:417-605
               
               
               Cow position:chrX:13785312-13785507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):50, 18

               
               
               Conread position:417-673
               
               
               Cow position:chrX:9855346-9855092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):110, 18

               
               
               Conread position:417-673
               
               
               Cow position:chrX:9954187-9953933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):110, 18

               
               
               Conread position:417-673
               
               
               Cow position:chrX:19015485-19015234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):56, 18

               
               
               Conread position:417-673
               
               
               Cow position:chrX:35681390-35681138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):64, 19

               
               
               Conread position:418-673
               
               
               Cow position:chrX:41199155-41198896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):23, 54

               
               
               Conread position:423-674
               
               
               Cow position:chrX:32127950-32128190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):42, 13

               
               
               Conread position:434-640
               
               
               Cow position:chrX:29563337-29563546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):26, 82

               
               
               Conread position:434-670
               
               
               Cow position:chrX:38439513-38439268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 90

               
               
               Conread position:434-671
               
               
               Cow position:chrX:37048549-37048786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):35, 25

               
               
               Conread position:434-674
               
               
               Cow position:chrX:41743946-41743703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:191
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):50, 89

               
               
               Conread position:434-675
               
               
               Cow position:chrX:11581965-11581724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):107, 36

               
               
               Conread position:435-620
               
               
               Cow position:chrX:35969055-35969238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):33, 46

               
               
               Conread position:436-633
               
               
               Cow position:chrX:14003616-14003813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:162
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):91, 35

               
               
               Conread position:436-664
               
               
               Cow position:chrX:4091670-4091448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):91, 32

               
               
               Conread position:436-667
               
               
               Cow position:chrX:17908258-17908486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):42, 34

               
               
               Conread position:436-673
               
               
               Cow position:chrX:28157530-28157277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):43, 87

               
               
               Conread position:436-674
               
               
               Cow position:chrX:40648016-40647768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):49, 84

               
               
               Conread position:440-663
               
               
               Cow position:chrX:18999914-18999690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):25, 40

               
               
               Conread position:443-675
               
               
               Cow position:chrX:14925024-14924790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:185
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):40, 28

               
               
               Conread position:444-675
               
               
               Cow position:chrX:29509417-29509654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):40, 15

               
               
               Conread position:453-675
               
               
               Cow position:chrX:35284638-35284412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):13, 73

               
               
               Conread position:456-651
               
               
               Cow position:chrX:31256877-31256681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):28, 69

               
               
               Conread position:465-672
               
               
               Cow position:chrX:35609990-35609779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:169
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):20, 55

               
               
               Conread position:466-672
               
               
               Cow position:chrX:46315374-46315588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):16, 57

               
               
               Conread position:483-672
               
               
               Cow position:chrX:8681945-8682137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):37, 69

               
               
               Conread position:483-672
               
               
               Cow position:chrX:42282410-42282225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):44, 37

               
               
               Conread position:485-670
               
               
               Cow position:chrX:25411821-25411631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):42, 35

               
               
               Conread position:497-673
               
               
               Cow position:chrX:45694070-45693898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):52, 0