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Cow genome map

           
Conread name:
           
LyN1-MLN01H100041
        

               
Conread position:
               
347-518
               

               
Cow position:
               
chr1:77461497-77461663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
71, 35
               

               
Conread position:
               
347-540
               

               
Cow position:
               
chr1:6196917-6196730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
62, 9
               

               
Conread position:
               
351-539
               

               
Cow position:
               
chr1:52355309-52355124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
58, 155
               

               
Conread position:
               
351-540
               

               
Cow position:
               
chr1:56191056-56190869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
58, 72
               

               
Conread position:
               
352-514
               

               
Cow position:
               
chr1:70535100-70534937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
352-522
               

               
Cow position:
               
chr1:13718472-13718303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
61, 7
               

               
Conread position:
               
353-504
               

               
Cow position:
               
chr1:31414862-31414712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
60, 93
               

               
Conread position:
               
353-507
               

               
Cow position:
               
chr1:22012596-22012443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
60, 69
               

               
Conread position:
               
353-507
               

               
Cow position:
               
chr1:89186100-89185944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
353-511
               

               
Cow position:
               
chr1:20543592-20543752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
353-513
               

               
Cow position:
               
chr1:40509893-40509732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
353-517
               

               
Cow position:
               
chr1:21507723-21507559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
55, 161
               

               
Conread position:
               
353-517
               

               
Cow position:
               
chr1:53650017-53650183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
353-518
               

               
Cow position:
               
chr1:19441175-19441010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
58, 153
               

               
Conread position:
               
353-518
               

               
Cow position:
               
chr1:30079306-30079471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-518
               

               
Cow position:
               
chr1:30531658-30531494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
58, 14
               

               
Conread position:
               
353-518
               

               
Cow position:
               
chr1:32563170-32563005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-518
               

               
Cow position:
               
chr1:44079055-44078891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
56, 85
               

               
Conread position:
               
353-518
               

               
Cow position:
               
chr1:51444609-51444775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
353-518
               

               
Cow position:
               
chr1:63602423-63602258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
11, 16
               

               
Conread position:
               
353-518
               

               
Cow position:
               
chr1:76749027-76748862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-518
               

               
Cow position:
               
chr1:89112187-89112351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
56, 15
               

               
Conread position:
               
353-518
               

               
Cow position:
               
chr1:100591408-100591243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-519
               

               
Cow position:
               
chr1:19793068-19793234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
56, 67
               

               
Conread position:
               
353-519
               

               
Cow position:
               
chr1:71081478-71081311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
353-520
               

               
Cow position:
               
chr1:102431374-102431204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
353-528
               

               
Cow position:
               
chr1:92196341-92196517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
353-538
               

               
Cow position:
               
chr1:93857887-93858070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-539
               

               
Cow position:
               
chr1:56425275-56425459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
56, 156
               

               
Conread position:
               
353-539
               

               
Cow position:
               
chr1:58340279-58340463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-539
               

               
Cow position:
               
chr1:72986823-72987005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
60, 113
               

               
Conread position:
               
353-539
               

               
Cow position:
               
chr1:82920777-82920593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr1:8602611-8602426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr1:8828386-8828570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
8, 16
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr1:9595581-9595396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr1:11199266-11199081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
56, 161
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr1:12057884-12057702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
56, 98
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr1:14240702-14240517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
60, 153
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr1:25053222-25053037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr1:25553169-25553353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
56, 76
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr1:26811709-26811524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr1:30372258-30372444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
23, 154
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr1:38712077-38712262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr1:42740061-42740246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr1:52755168-52754984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
56, 14
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr1:55043897-55043714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr1:55780236-55780418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
56, 44
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr1:57362968-57362783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr1:57571197-57571382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
60, 153
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr1:65389922-65390107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr1:68602265-68602080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr1:69406523-69406708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr1:72086964-72087149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
56, 158
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr1:76618110-76617925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
56, 158
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr1:79453395-79453210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
60, 153
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr1:88179224-88179409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr1:90913194-90913379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr1:99837986-99837801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr1:99916804-99916989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-541
               

               
Cow position:
               
chr1:59483498-59483312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-541
               

               
Cow position:
               
chr1:61203749-61203935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-541
               

               
Cow position:
               
chr1:79553858-79554046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
56, 155
               

               
Conread position:
               
353-542
               

               
Cow position:
               
chr1:24440696-24440510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
152, 0
               

               
Conread position:
               
353-542
               

               
Cow position:
               
chr1:33537456-33537649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
353-542
               

               
Cow position:
               
chr1:54933293-54933479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-542
               

               
Cow position:
               
chr1:57759278-57759461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
56, 112
               

               
Conread position:
               
353-543
               

               
Cow position:
               
chr1:56475365-56475548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
85, 19
               

               
Conread position:
               
353-544
               

               
Cow position:
               
chr1:18282339-18282526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
353-544
               

               
Cow position:
               
chr1:63048943-63049132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-544
               

               
Cow position:
               
chr1:68950772-68950956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
57, 31
               

               
Conread position:
               
353-544
               

               
Cow position:
               
chr1:73762180-73761992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
56, 157
               

               
Conread position:
               
353-544
               

               
Cow position:
               
chr1:98559278-98559467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
56, 158
               

               
Conread position:
               
353-547
               

               
Cow position:
               
chr1:78290922-78291114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
354-544
               

               
Cow position:
               
chr1:31238823-31238630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
355-536
               

               
Cow position:
               
chr1:67189062-67188883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
54, 159
               

               
Conread position:
               
355-540
               

               
Cow position:
               
chr1:97076134-97075951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
54, 156
               

               
Conread position:
               
356-502
               

               
Cow position:
               
chr1:33987455-33987308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
356-508
               

               
Cow position:
               
chr1:51313411-51313258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
356-511
               

               
Cow position:
               
chr1:22288368-22288524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
356-514
               

               
Cow position:
               
chr1:85338229-85338388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
356-516
               

               
Cow position:
               
chr1:72864313-72864473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
53, 158
               

               
Conread position:
               
356-519
               

               
Cow position:
               
chr1:41736507-41736343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
356-538
               

               
Cow position:
               
chr1:76700376-76700196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
356-540
               

               
Cow position:
               
chr1:3382951-3382769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
53, 154
               

               
Conread position:
               
356-540
               

               
Cow position:
               
chr1:14529096-14528916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
153, 57
               

               
Conread position:
               
356-540
               

               
Cow position:
               
chr1:17938386-17938203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
53, 165
               

               
Conread position:
               
356-540
               

               
Cow position:
               
chr1:33548033-33547851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
53, 149
               

               
Conread position:
               
356-540
               

               
Cow position:
               
chr1:100888140-100887958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
57, 150
               

               
Conread position:
               
356-542
               

               
Cow position:
               
chr1:23117840-23117656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
53, 153
               

               
Conread position:
               
356-542
               

               
Cow position:
               
chr1:56619579-56619394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
47, 163
               

               
Conread position:
               
356-544
               

               
Cow position:
               
chr1:20867240-20867056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
158, 0
               

               
Conread position:
               
356-544
               

               
Cow position:
               
chr1:99628709-99628529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
5, 98
               

               
Conread position:
               
356-547
               

               
Cow position:
               
chr1:58197086-58196893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
53, 173
               

               
Conread position:
               
357-518
               

               
Cow position:
               
chr1:82369786-82369945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
153, 0
               

               
Conread position:
               
357-544
               

               
Cow position:
               
chr1:88328118-88327931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
52, 162
               

               
Conread position:
               
358-516
               

               
Cow position:
               
chr1:28176122-28176281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
51, 149
               

               
Conread position:
               
359-518
               

               
Cow position:
               
chr1:68252700-68252856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
14, 98
               

               
Conread position:
               
360-519
               

               
Cow position:
               
chr1:100536520-100536680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
360-544
               

               
Cow position:
               
chr1:13579407-13579224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
48, 12
               

               
Conread position:
               
360-544
               

               
Cow position:
               
chr1:61220801-61220985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
53, 153
               

               
Conread position:
               
360-544
               

               
Cow position:
               
chr1:92881481-92881295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
17, 166
               

               
Conread position:
               
360-547
               

               
Cow position:
               
chr1:85773577-85773762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
49, 152
               

               
Conread position:
               
361-510
               

               
Cow position:
               
chr1:93111973-93111827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
48, 96
               

               
Conread position:
               
361-511
               

               
Cow position:
               
chr1:73430997-73430847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
48, 91
               

               
Conread position:
               
361-514
               

               
Cow position:
               
chr1:39250065-39249911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
361-517
               

               
Cow position:
               
chr1:98789227-98789384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
361-540
               

               
Cow position:
               
chr1:38478984-38479161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
48, 145
               

               
Conread position:
               
361-540
               

               
Cow position:
               
chr1:67078454-67078277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
48, 153
               

               
Conread position:
               
361-544
               

               
Cow position:
               
chr1:55203537-55203354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
171, 154
               

               
Conread position:
               
361-544
               

               
Cow position:
               
chr1:89263240-89263055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
361-544
               

               
Cow position:
               
chr1:90297287-90297469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
54, 153
               

               
Conread position:
               
361-561
               

               
Cow position:
               
chr1:71920441-71920641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
48, 185
               

               
Conread position:
               
363-508
               

               
Cow position:
               
chr1:12465639-12465499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
50, 29
               

               
Conread position:
               
364-540
               

               
Cow position:
               
chr1:94663029-94663203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
45, 142
               

               
Conread position:
               
364-544
               

               
Cow position:
               
chr1:19145797-19145607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
43, 159
               

               
Conread position:
               
364-544
               

               
Cow position:
               
chr1:70381039-70380859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
45, 150
               

               
Conread position:
               
367-520
               

               
Cow position:
               
chr1:70051607-70051759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
42, 5
               

               
Conread position:
               
367-544
               

               
Cow position:
               
chr1:68783535-68783356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
42, 106
               

               
Conread position:
               
368-544
               

               
Cow position:
               
chr1:44229594-44229769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
7, 144
               

               
Conread position:
               
372-540
               

               
Cow position:
               
chr1:92433174-92433332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
37, 68
               

               
Conread position:
               
375-518
               

               
Cow position:
               
chr1:15049196-15049338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
38, 136
               

               
Conread position:
               
376-544
               

               
Cow position:
               
chr1:99791805-99791978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
91, 14
               

               
Conread position:
               
383-511
               

               
Cow position:
               
chr1:85142818-85142691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
386-518
               

               
Cow position:
               
chr1:90605455-90605326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
387-523
               

               
Cow position:
               
chr1:88297619-88297758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
389-518
               

               
Cow position:
               
chr1:85163916-85163785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
25, 122
               

               
Conread position:
               
392-544
               

               
Cow position:
               
chr1:81356890-81356740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
17, 123
               

               
Conread position:
               
409-547
               

               
Cow position:
               
chr1:88676892-88677026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
422-519
               

               
Cow position:
               
chr1:79843607-79843705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
99
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
428-544
               

               
Cow position:
               
chr1:43650469-43650351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
51, 99
               

               
Conread position:
               
347-540
               

               
Cow position:
               
chr10:10082696-10082507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
62, 9
               

               
Conread position:
               
350-540
               

               
Cow position:
               
chr10:37041382-37041570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
64, 156
               

               
Conread position:
               
352-514
               

               
Cow position:
               
chr10:31533832-31533994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
57, 8
               

               
Conread position:
               
353-504
               

               
Cow position:
               
chr10:14948148-14948302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
353-511
               

               
Cow position:
               
chr10:36466083-36465929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
353-512
               

               
Cow position:
               
chr10:2612477-2612634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
60, 83
               

               
Conread position:
               
353-512
               

               
Cow position:
               
chr10:49145631-49145795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
113, 62
               

               
Conread position:
               
353-514
               

               
Cow position:
               
chr10:25259108-25259261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
353-517
               

               
Cow position:
               
chr10:6539172-6539336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
56, 156
               

               
Conread position:
               
353-517
               

               
Cow position:
               
chr10:25341496-25341661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
353-517
               

               
Cow position:
               
chr10:32173818-32173972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
353-517
               

               
Cow position:
               
chr10:57143475-57143307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
353-518
               

               
Cow position:
               
chr10:21490327-21490489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
56, 87
               

               
Conread position:
               
353-518
               

               
Cow position:
               
chr10:58265473-58265307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
353-519
               

               
Cow position:
               
chr10:22978769-22978603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
60, 158
               

               
Conread position:
               
353-539
               

               
Cow position:
               
chr10:32704152-32704336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
56, 158
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr10:130310-130495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
56, 158
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr10:2117059-2116874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
57, 161
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr10:2736404-2736590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
28, 153
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr10:4640967-4640782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
56, 161
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr10:7278714-7278530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr10:8459613-8459798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr10:9681783-9681598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr10:14332451-14332266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr10:21414119-21413934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
60, 98
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr10:22104870-22105055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr10:23412436-23412621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr10:26922899-26922714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr10:28030545-28030361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
56, 19
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr10:28235894-28236076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr10:32282404-32282589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr10:37773269-37773454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr10:38843514-38843698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
56, 74
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr10:51558790-51558975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr10:53827971-53828157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
56, 154
               

               
Conread position:
               
353-541
               

               
Cow position:
               
chr10:50451942-50452128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
56, 111
               

               
Conread position:
               
353-542
               

               
Cow position:
               
chr10:1979591-1979406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
28, 47
               

               
Conread position:
               
353-542
               

               
Cow position:
               
chr10:19522764-19522576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
62, 157
               

               
Conread position:
               
353-543
               

               
Cow position:
               
chr10:31527086-31527275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
65, 159
               

               
Conread position:
               
353-544
               

               
Cow position:
               
chr10:2526870-2527057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
20, 46
               

               
Conread position:
               
353-544
               

               
Cow position:
               
chr10:5784853-5784661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
56, 94
               

               
Conread position:
               
353-544
               

               
Cow position:
               
chr10:6012949-6012754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
150, 0
               

               
Conread position:
               
353-544
               

               
Cow position:
               
chr10:6253414-6253230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
353-544
               

               
Cow position:
               
chr10:10147711-10147896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
60, 158
               

               
Conread position:
               
353-544
               

               
Cow position:
               
chr10:11406666-11406848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
353-544
               

               
Cow position:
               
chr10:29069191-29069378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
28, 78
               

               
Conread position:
               
353-544
               

               
Cow position:
               
chr10:34666522-34666334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
168, 0
               

               
Conread position:
               
353-544
               

               
Cow position:
               
chr10:45484618-45484431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
60, 161
               

               
Conread position:
               
353-544
               

               
Cow position:
               
chr10:46194866-46195060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
47, 166
               

               
Conread position:
               
353-544
               

               
Cow position:
               
chr10:53058915-53058727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
56, 113
               

               
Conread position:
               
353-546
               

               
Cow position:
               
chr10:24023198-24023000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
353-547
               

               
Cow position:
               
chr10:23648903-23648711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
60, 153
               

               
Conread position:
               
353-547
               

               
Cow position:
               
chr10:62405406-62405214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-547
               

               
Cow position:
               
chr10:63776218-63776410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-548
               

               
Cow position:
               
chr10:9445891-9445698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
57, 109
               

               
Conread position:
               
353-551
               

               
Cow position:
               
chr10:60723589-60723400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
59, 33
               

               
Conread position:
               
353-740
               

               
Cow position:
               
chr10:17222762-17223144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
56, 161
               

               
Conread position:
               
354-517
               

               
Cow position:
               
chr10:28040174-28040011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
61, 157
               

               
Conread position:
               
354-518
               

               
Cow position:
               
chr10:9517010-9517174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
55, 152
               

               
Conread position:
               
354-520
               

               
Cow position:
               
chr10:51863958-51863794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
22, 50
               

               
Conread position:
               
356-504
               

               
Cow position:
               
chr10:21081229-21081382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
356-507
               

               
Cow position:
               
chr10:39077769-39077922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
356-514
               

               
Cow position:
               
chr10:10721858-10721704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
57, 104
               

               
Conread position:
               
356-517
               

               
Cow position:
               
chr10:25005657-25005818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
57, 150
               

               
Conread position:
               
356-517
               

               
Cow position:
               
chr10:39441561-39441721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
53, 66
               

               
Conread position:
               
356-518
               

               
Cow position:
               
chr10:14904608-14904766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
356-543
               

               
Cow position:
               
chr10:22528831-22528640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 104
               

               
Conread position:
               
356-544
               

               
Cow position:
               
chr10:76486-76664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
356-544
               

               
Cow position:
               
chr10:15911869-15912050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
57, 16
               

               
Conread position:
               
356-544
               

               
Cow position:
               
chr10:23913461-23913277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
53, 66
               

               
Conread position:
               
356-544
               

               
Cow position:
               
chr10:58400261-58400082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
53, 95
               

               
Conread position:
               
356-544
               

               
Cow position:
               
chr10:60936041-60936227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
154, 0
               

               
Conread position:
               
356-547
               

               
Cow position:
               
chr10:8094242-8094052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
59, 155
               

               
Conread position:
               
357-540
               

               
Cow position:
               
chr10:39037657-39037476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
54, 149
               

               
Conread position:
               
357-544
               

               
Cow position:
               
chr10:61923193-61923004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
80, 10
               

               
Conread position:
               
358-544
               

               
Cow position:
               
chr10:1415323-1415504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
42, 87
               

               
Conread position:
               
358-544
               

               
Cow position:
               
chr10:2856208-2856392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
129, 45
               

               
Conread position:
               
360-540
               

               
Cow position:
               
chr10:10023362-10023536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
49, 146
               

               
Conread position:
               
361-507
               

               
Cow position:
               
chr10:19514615-19514762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
361-514
               

               
Cow position:
               
chr10:4995495-4995341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
361-518
               

               
Cow position:
               
chr10:22906723-22906564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
361-542
               

               
Cow position:
               
chr10:22449074-22448892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
361-544
               

               
Cow position:
               
chr10:15619995-15619814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
48, 149
               

               
Conread position:
               
363-540
               

               
Cow position:
               
chr10:10860147-10859971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
7, 144
               

               
Conread position:
               
367-511
               

               
Cow position:
               
chr10:19542004-19541858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
368-504
               

               
Cow position:
               
chr10:65131649-65131513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
368-539
               

               
Cow position:
               
chr10:44866277-44866448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
10, 145
               

               
Conread position:
               
369-544
               

               
Cow position:
               
chr10:57457833-57458007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
40, 142
               

               
Conread position:
               
371-544
               

               
Cow position:
               
chr10:23935143-23935314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
42, 53
               

               
Conread position:
               
376-534
               

               
Cow position:
               
chr10:28339742-28339903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
23, 57
               

               
Conread position:
               
377-544
               

               
Cow position:
               
chr10:53075116-53075280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
38, 145
               

               
Conread position:
               
378-544
               

               
Cow position:
               
chr10:1185753-1185590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
40, 30
               

               
Conread position:
               
381-519
               

               
Cow position:
               
chr10:3999214-3999353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
382-544
               

               
Cow position:
               
chr10:46378677-46378509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
29, 10
               

               
Conread position:
               
384-511
               

               
Cow position:
               
chr10:24974226-24974102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
393-559
               

               
Cow position:
               
chr10:9569434-9569270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
17, 116
               

               
Conread position:
               
396-544
               

               
Cow position:
               
chr10:59567980-59568126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
13, 115
               

               
Conread position:
               
403-519
               

               
Cow position:
               
chr10:37914015-37913898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
415-516
               

               
Cow position:
               
chr10:7385115-7385014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
102
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
417-544
               

               
Cow position:
               
chr10:40164572-40164446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
428-518
               

               
Cow position:
               
chr10:30107104-30107014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
91
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
430-544
               

               
Cow position:
               
chr10:51695571-51695683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
347-518
               

               
Cow position:
               
chr11:30700518-30700687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
62, 9
               

               
Conread position:
               
350-540
               

               
Cow position:
               
chr11:4267130-4266942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
59, 164
               

               
Conread position:
               
351-540
               

               
Cow position:
               
chr11:12353866-12353679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
58, 155
               

               
Conread position:
               
351-548
               

               
Cow position:
               
chr11:12317044-12316842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
58, 197
               

               
Conread position:
               
352-518
               

               
Cow position:
               
chr11:41167666-41167501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
57, 7
               

               
Conread position:
               
352-519
               

               
Cow position:
               
chr11:33733555-33733391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
106, 7
               

               
Conread position:
               
353-504
               

               
Cow position:
               
chr11:10958857-10959009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
353-511
               

               
Cow position:
               
chr11:63507538-63507696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
59, 122
               

               
Conread position:
               
353-513
               

               
Cow position:
               
chr11:15995522-15995683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
353-517
               

               
Cow position:
               
chr11:260115-259951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
56, 107
               

               
Conread position:
               
353-518
               

               
Cow position:
               
chr11:14259933-14259768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
56, 152
               

               
Conread position:
               
353-518
               

               
Cow position:
               
chr11:40487177-40487346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
90, 114
               

               
Conread position:
               
353-518
               

               
Cow position:
               
chr11:80591385-80591550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-519
               

               
Cow position:
               
chr11:25332708-25332543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
353-519
               

               
Cow position:
               
chr11:53428994-53428828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
56, 84
               

               
Conread position:
               
353-519
               

               
Cow position:
               
chr11:56227958-56228124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
56, 14
               

               
Conread position:
               
353-519
               

               
Cow position:
               
chr11:65410071-65409905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
18, 50
               

               
Conread position:
               
353-532
               

               
Cow position:
               
chr11:26550503-26550681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
40, 159
               

               
Conread position:
               
353-533
               

               
Cow position:
               
chr11:11857736-11857917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
47, 175
               

               
Conread position:
               
353-538
               

               
Cow position:
               
chr11:11991025-11991210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
61, 155
               

               
Conread position:
               
353-538
               

               
Cow position:
               
chr11:71332530-71332710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
56, 101
               

               
Conread position:
               
353-539
               

               
Cow position:
               
chr11:32077755-32077571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr11:4024327-4024142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
30, 153
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr11:10851142-10851326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
56, 76
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr11:18920569-18920385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
56, 113
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr11:19099457-19099272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr11:23883375-23883560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
56, 161
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr11:33601611-33601426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr11:38832451-38832266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr11:44154055-44153870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
56, 72
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr11:56463390-56463575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
56, 154
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr11:67295979-67295794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr11:70030447-70030632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
56, 71
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr11:85390834-85390649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-541
               

               
Cow position:
               
chr11:3238329-3238516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
23, 154
               

               
Conread position:
               
353-542
               

               
Cow position:
               
chr11:30057234-30057414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
158, 60
               

               
Conread position:
               
353-542
               

               
Cow position:
               
chr11:73513344-73513156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
56, 84
               

               
Conread position:
               
353-544
               

               
Cow position:
               
chr11:21728992-21728803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
57, 27
               

               
Conread position:
               
353-544
               

               
Cow position:
               
chr11:28394098-28394289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
56, 126
               

               
Conread position:
               
353-544
               

               
Cow position:
               
chr11:48428169-48428357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
56, 169
               

               
Conread position:
               
353-544
               

               
Cow position:
               
chr11:59871843-59872028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
353-544
               

               
Cow position:
               
chr11:63167493-63167303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
75, 62
               

               
Conread position:
               
353-544
               

               
Cow position:
               
chr11:64047414-64047610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
354-540
               

               
Cow position:
               
chr11:28381700-28381879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
55, 72
               

               
Conread position:
               
355-546
               

               
Cow position:
               
chr11:12111957-12112149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
56, 42
               

               
Conread position:
               
356-510
               

               
Cow position:
               
chr11:41098374-41098222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
356-514
               

               
Cow position:
               
chr11:3263854-3264013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
356-517
               

               
Cow position:
               
chr11:38842657-38842812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
25, 58
               

               
Conread position:
               
356-517
               

               
Cow position:
               
chr11:51477667-51477827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
356-518
               

               
Cow position:
               
chr11:77034061-77033899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
53, 150
               

               
Conread position:
               
356-521
               

               
Cow position:
               
chr11:34608969-34609136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
356-540
               

               
Cow position:
               
chr11:35738313-35738131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
53, 150
               

               
Conread position:
               
356-540
               

               
Cow position:
               
chr11:46781038-46780857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
149, 0
               

               
Conread position:
               
356-540
               

               
Cow position:
               
chr11:58139725-58139907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
53, 150
               

               
Conread position:
               
356-543
               

               
Cow position:
               
chr11:45632927-45632740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
53, 166
               

               
Conread position:
               
356-544
               

               
Cow position:
               
chr11:69403192-69403004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
53, 166
               

               
Conread position:
               
356-544
               

               
Cow position:
               
chr11:84774196-84774380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
62, 155
               

               
Conread position:
               
357-515
               

               
Cow position:
               
chr11:44937905-44938066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
357-544
               

               
Cow position:
               
chr11:8844211-8844394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
52, 154
               

               
Conread position:
               
358-544
               

               
Cow position:
               
chr11:67746445-67746629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
51, 173
               

               
Conread position:
               
359-542
               

               
Cow position:
               
chr11:53280366-53280184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
50, 9
               

               
Conread position:
               
361-542
               

               
Cow position:
               
chr11:45651887-45651709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
51, 79
               

               
Conread position:
               
361-544
               

               
Cow position:
               
chr11:52298127-52297944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
55, 161
               

               
Conread position:
               
362-514
               

               
Cow position:
               
chr11:53855573-53855720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
364-511
               

               
Cow position:
               
chr11:31892981-31893127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
364-548
               

               
Cow position:
               
chr11:76767457-76767633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
365-551
               

               
Cow position:
               
chr11:43645017-43644836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
139, 160
               

               
Conread position:
               
367-511
               

               
Cow position:
               
chr11:32108812-32108953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
367-544
               

               
Cow position:
               
chr11:31236361-31236186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
39, 84
               

               
Conread position:
               
368-544
               

               
Cow position:
               
chr11:8829742-8829567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
45, 153
               

               
Conread position:
               
371-544
               

               
Cow position:
               
chr11:4060907-4060736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
38, 140
               

               
Conread position:
               
371-544
               

               
Cow position:
               
chr11:48168035-48167864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
38, 135
               

               
Conread position:
               
375-544
               

               
Cow position:
               
chr11:42372855-42373019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
40, 19
               

               
Conread position:
               
382-540
               

               
Cow position:
               
chr11:48648813-48648967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
386-518
               

               
Cow position:
               
chr11:66944148-66944016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
23, 125
               

               
Conread position:
               
386-540
               

               
Cow position:
               
chr11:72313652-72313804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
23, 120
               

               
Conread position:
               
387-519
               

               
Cow position:
               
chr11:42358254-42358387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
26, 46
               

               
Conread position:
               
391-544
               

               
Cow position:
               
chr11:44644392-44644241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
18, 120
               

               
Conread position:
               
394-544
               

               
Cow position:
               
chr11:24601069-24601218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
20, 127
               

               
Conread position:
               
395-544
               

               
Cow position:
               
chr11:75206098-75206248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
109, 43
               

               
Conread position:
               
396-536
               

               
Cow position:
               
chr11:14469570-14469710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
13, 25
               

               
Conread position:
               
399-536
               

               
Cow position:
               
chr11:18389755-18389615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
400-533
               

               
Cow position:
               
chr11:17037459-17037330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
418-544
               

               
Cow position:
               
chr11:6734093-6733966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
351-540
               

               
Cow position:
               
chr12:27506340-27506153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
58, 155
               

               
Conread position:
               
352-511
               

               
Cow position:
               
chr12:45540704-45540864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
353-514
               

               
Cow position:
               
chr12:3094312-3094149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
353-518
               

               
Cow position:
               
chr12:12754845-12754681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
56, 29
               

               
Conread position:
               
353-518
               

               
Cow position:
               
chr12:25313402-25313237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
56, 158
               

               
Conread position:
               
353-518
               

               
Cow position:
               
chr12:27994412-27994577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
57, 156
               

               
Conread position:
               
353-518
               

               
Cow position:
               
chr12:28763702-28763539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
56, 19
               

               
Conread position:
               
353-538
               

               
Cow position:
               
chr12:3716962-3716779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr12:3180720-3180905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
56, 156
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr12:11101559-11101744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr12:22202370-22202185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
56, 156
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr12:22480436-22480620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-544
               

               
Cow position:
               
chr12:8841747-8841555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
353-544
               

               
Cow position:
               
chr12:10931396-10931586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
56, 154
               

               
Conread position:
               
353-544
               

               
Cow position:
               
chr12:31533530-31533343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
56, 23
               

               
Conread position:
               
353-544
               

               
Cow position:
               
chr12:43681316-43681504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
56, 156
               

               
Conread position:
               
353-551
               

               
Cow position:
               
chr12:41337921-41337726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
354-544
               

               
Cow position:
               
chr12:22286622-22286434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 0
               

               
Conread position:
               
356-518
               

               
Cow position:
               
chr12:20459408-20459246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
53, 150
               

               
Conread position:
               
356-540
               

               
Cow position:
               
chr12:18585987-18586169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
53, 150
               

               
Conread position:
               
356-544
               

               
Cow position:
               
chr12:17663273-17663450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
360-511
               

               
Cow position:
               
chr12:19872888-19873039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
49, 8
               

               
Conread position:
               
361-506
               

               
Cow position:
               
chr12:15760360-15760506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
361-517
               

               
Cow position:
               
chr12:1994645-1994489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
54, 153
               

               
Conread position:
               
362-518
               

               
Cow position:
               
chr12:31217502-31217656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
49, 77
               

               
Conread position:
               
364-517
               

               
Cow position:
               
chr12:27852328-27852175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
45, 145
               

               
Conread position:
               
365-542
               

               
Cow position:
               
chr12:24756224-24756047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
11, 48
               

               
Conread position:
               
368-517
               

               
Cow position:
               
chr12:25143403-25143253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
12, 144
               

               
Conread position:
               
368-541
               

               
Cow position:
               
chr12:14568498-14568327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
41, 154
               

               
Conread position:
               
386-518
               

               
Cow position:
               
chr12:20217839-20217974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
23, 123
               

               
Conread position:
               
392-544
               

               
Cow position:
               
chr12:1849764-1849607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
403-544
               

               
Cow position:
               
chr12:19868587-19868730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
24, 109
               

               
Conread position:
               
408-519
               

               
Cow position:
               
chr12:8674084-8673972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
142-547
               

               
Cow position:
               
chr13:11149196-11148797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
364, 271
               

               
Conread position:
               
347-540
               

               
Cow position:
               
chr13:2799983-2800172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
62, 9
               

               
Conread position:
               
353-512
               

               
Cow position:
               
chr13:15458806-15458967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
353-513
               

               
Cow position:
               
chr13:9537344-9537505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
353-515
               

               
Cow position:
               
chr13:16345043-16344880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
62, 39
               

               
Conread position:
               
353-517
               

               
Cow position:
               
chr13:4944493-4944658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
56, 154
               

               
Conread position:
               
353-517
               

               
Cow position:
               
chr13:15256991-15257156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
353-518
               

               
Cow position:
               
chr13:1591051-1590886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr13:4486956-4487141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
60, 153
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr13:6665025-6664840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr13:13902959-13903144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
56, 126
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr13:15280390-15280574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
56, 117
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr13:15921357-15921172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr13:18330022-18329837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr13:20778367-20778179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
56, 95
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr13:30469015-30468830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr13:31608334-31608149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
56, 158
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr13:32734084-32733899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr13:34038456-34038271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
56, 156
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr13:34345405-34345590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr13:54238345-54238161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
23, 45
               

               
Conread position:
               
353-544
               

               
Cow position:
               
chr13:2805179-2804990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
60, 152
               

               
Conread position:
               
353-544
               

               
Cow position:
               
chr13:19843573-19843759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
56, 98
               

               
Conread position:
               
353-544
               

               
Cow position:
               
chr13:21905809-21905620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 156
               

               
Conread position:
               
353-544
               

               
Cow position:
               
chr13:24059430-24059619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
56, 150
               

               
Conread position:
               
353-544
               

               
Cow position:
               
chr13:34190348-34190538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
354-544
               

               
Cow position:
               
chr13:47313594-47313403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
355-518
               

               
Cow position:
               
chr13:23266727-23266564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
58, 129
               

               
Conread position:
               
356-508
               

               
Cow position:
               
chr13:46524301-46524462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
356-521
               

               
Cow position:
               
chr13:38612324-38612492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
53, 68
               

               
Conread position:
               
356-542
               

               
Cow position:
               
chr13:17456206-17456388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
57, 83
               

               
Conread position:
               
356-544
               

               
Cow position:
               
chr13:12618225-12618408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
356-547
               

               
Cow position:
               
chr13:41337573-41337388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
53, 41
               

               
Conread position:
               
357-518
               

               
Cow position:
               
chr13:54864051-54864212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
52, 154
               

               
Conread position:
               
358-544
               

               
Cow position:
               
chr13:30241673-30241860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
51, 179
               

               
Conread position:
               
359-517
               

               
Cow position:
               
chr13:61954351-61954510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
361-511
               

               
Cow position:
               
chr13:18437708-18437859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
361-544
               

               
Cow position:
               
chr13:16244118-16243936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
46, 161
               

               
Conread position:
               
364-544
               

               
Cow position:
               
chr13:34994066-34994245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
50, 8
               

               
Conread position:
               
367-544
               

               
Cow position:
               
chr13:5229858-5229683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
42, 139
               

               
Conread position:
               
367-544
               

               
Cow position:
               
chr13:11571559-11571385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
42, 76
               

               
Conread position:
               
368-520
               

               
Cow position:
               
chr13:46462747-46462899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
41, 12
               

               
Conread position:
               
368-540
               

               
Cow position:
               
chr13:33907644-33907474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
41, 141
               

               
Conread position:
               
371-518
               

               
Cow position:
               
chr13:9301277-9301425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
12, 136
               

               
Conread position:
               
376-550
               

               
Cow position:
               
chr13:20977766-20977591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
24, 161
               

               
Conread position:
               
388-518
               

               
Cow position:
               
chr13:6417680-6417810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
27, 123
               

               
Conread position:
               
408-540
               

               
Cow position:
               
chr13:32549929-32550058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
347-503
               

               
Cow position:
               
chr14:38241613-38241456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
15, 10
               

               
Conread position:
               
347-507
               

               
Cow position:
               
chr14:22026808-22026647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
353-517
               

               
Cow position:
               
chr14:8102705-8102540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
60, 162
               

               
Conread position:
               
353-517
               

               
Cow position:
               
chr14:11474349-11474185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
56, 156
               

               
Conread position:
               
353-517
               

               
Cow position:
               
chr14:32584057-32583895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
56, 80
               

               
Conread position:
               
353-518
               

               
Cow position:
               
chr14:34906498-34906663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-518
               

               
Cow position:
               
chr14:44293591-44293755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
56, 89
               

               
Conread position:
               
353-520
               

               
Cow position:
               
chr14:42849629-42849460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
353-539
               

               
Cow position:
               
chr14:5379132-5379314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
56, 63
               

               
Conread position:
               
353-539
               

               
Cow position:
               
chr14:12740076-12739892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr14:11150943-11150758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr14:12903307-12903491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
105, 68
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr14:17690101-17690278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr14:20786357-20786540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
56, 72
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr14:24980520-24980705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
56, 158
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr14:27040413-27040228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr14:28993375-28993195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
56, 113
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr14:41081670-41081484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
28, 154
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr14:46302878-46303063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
56, 161
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr14:48251481-48251298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
56, 109
               

               
Conread position:
               
353-542
               

               
Cow position:
               
chr14:30476370-30476184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
152, 0
               

               
Conread position:
               
353-542
               

               
Cow position:
               
chr14:45739351-45739165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
60, 37
               

               
Conread position:
               
353-542
               

               
Cow position:
               
chr14:45848129-45848317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
65, 158
               

               
Conread position:
               
353-543
               

               
Cow position:
               
chr14:13276053-13276239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
56, 44
               

               
Conread position:
               
353-544
               

               
Cow position:
               
chr14:10310532-10310721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
56, 156
               

               
Conread position:
               
353-544
               

               
Cow position:
               
chr14:21534108-21534294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
56, 33
               

               
Conread position:
               
353-544
               

               
Cow position:
               
chr14:22689923-22689733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
28, 154
               

               
Conread position:
               
353-544
               

               
Cow position:
               
chr14:33835036-33834847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
56, 80
               

               
Conread position:
               
353-544
               

               
Cow position:
               
chr14:41212097-41211908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
56, 75
               

               
Conread position:
               
355-511
               

               
Cow position:
               
chr14:44026841-44026684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
356-513
               

               
Cow position:
               
chr14:47593333-47593487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
53, 73
               

               
Conread position:
               
356-518
               

               
Cow position:
               
chr14:7647090-7647253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
356-540
               

               
Cow position:
               
chr14:7475832-7476014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
53, 150
               

               
Conread position:
               
356-540
               

               
Cow position:
               
chr14:13308706-13308889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
53, 151
               

               
Conread position:
               
356-540
               

               
Cow position:
               
chr14:44692125-44692307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
53, 150
               

               
Conread position:
               
356-540
               

               
Cow position:
               
chr14:49995569-49995388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
51, 153
               

               
Conread position:
               
356-540
               

               
Cow position:
               
chr14:50069222-50069040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
51, 150
               

               
Conread position:
               
356-544
               

               
Cow position:
               
chr14:193125-193311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
53, 150
               

               
Conread position:
               
358-518
               

               
Cow position:
               
chr14:4992181-4992028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
57, 86
               

               
Conread position:
               
358-518
               

               
Cow position:
               
chr14:37677359-37677521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
359-514
               

               
Cow position:
               
chr14:30663058-30662902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
360-544
               

               
Cow position:
               
chr14:39773937-39774118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
49, 113
               

               
Conread position:
               
361-516
               

               
Cow position:
               
chr14:17771193-17771040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
361-520
               

               
Cow position:
               
chr14:25430631-25430792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
361-544
               

               
Cow position:
               
chr14:42259445-42259627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
167, 47
               

               
Conread position:
               
361-544
               

               
Cow position:
               
chr14:43561177-43561354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
50, 90
               

               
Conread position:
               
361-558
               

               
Cow position:
               
chr14:24990298-24990100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
52, 74
               

               
Conread position:
               
362-537
               

               
Cow position:
               
chr14:44772854-44772675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
47, 10
               

               
Conread position:
               
367-518
               

               
Cow position:
               
chr14:37227183-37227331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
42, 25
               

               
Conread position:
               
368-540
               

               
Cow position:
               
chr14:1802184-1802354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
41, 146
               

               
Conread position:
               
369-518
               

               
Cow position:
               
chr14:47645415-47645564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
11, 86
               

               
Conread position:
               
386-542
               

               
Cow position:
               
chr14:12859530-12859378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
387-541
               

               
Cow position:
               
chr14:40189901-40189748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
100, 41
               

               
Conread position:
               
394-540
               

               
Cow position:
               
chr14:5492286-5492142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
19, 111
               

               
Conread position:
               
397-536
               

               
Cow position:
               
chr14:41757176-41757038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
17, 124
               

               
Conread position:
               
347-538
               

               
Cow position:
               
chr15:7271312-7271499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
62, 9
               

               
Conread position:
               
351-540
               

               
Cow position:
               
chr15:24569078-24568891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
58, 155
               

               
Conread position:
               
353-501
               

               
Cow position:
               
chr15:7325418-7325270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
60, 101
               

               
Conread position:
               
353-512
               

               
Cow position:
               
chr15:4787824-4787663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
353-517
               

               
Cow position:
               
chr15:4769481-4769648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
56, 71
               

               
Conread position:
               
353-517
               

               
Cow position:
               
chr15:36356092-36355927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
353-518
               

               
Cow position:
               
chr15:4712884-4713049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
56, 161
               

               
Conread position:
               
353-518
               

               
Cow position:
               
chr15:7319542-7319707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-518
               

               
Cow position:
               
chr15:12417736-12417573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
56, 15
               

               
Conread position:
               
353-518
               

               
Cow position:
               
chr15:15344130-15343966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
56, 39
               

               
Conread position:
               
353-518
               

               
Cow position:
               
chr15:16787668-16787502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
353-518
               

               
Cow position:
               
chr15:18579699-18579864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-518
               

               
Cow position:
               
chr15:19734822-19734657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
59, 153
               

               
Conread position:
               
353-518
               

               
Cow position:
               
chr15:42939888-42940053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
56, 89
               

               
Conread position:
               
353-519
               

               
Cow position:
               
chr15:42533027-42533194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
353-538
               

               
Cow position:
               
chr15:18661464-18661646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
152, 0
               

               
Conread position:
               
353-539
               

               
Cow position:
               
chr15:9910125-9909941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr15:561703-561888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr15:2080308-2080492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
54, 117
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr15:2899281-2899096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr15:3721163-3720978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
62, 156
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr15:5197932-5198117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
56, 70
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr15:6152667-6152482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
56, 161
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr15:7841296-7841481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr15:44073422-44073607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
55, 161
               

               
Conread position:
               
353-541
               

               
Cow position:
               
chr15:6758500-6758314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
353-542
               

               
Cow position:
               
chr15:41793353-41793166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
60, 70
               

               
Conread position:
               
353-544
               

               
Cow position:
               
chr15:794033-794222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
44, 29
               

               
Conread position:
               
353-544
               

               
Cow position:
               
chr15:1329135-1329314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
353-544
               

               
Cow position:
               
chr15:6945459-6945270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
58, 157
               

               
Conread position:
               
353-544
               

               
Cow position:
               
chr15:10736543-10736733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
56, 115
               

               
Conread position:
               
353-544
               

               
Cow position:
               
chr15:18019410-18019221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
56, 158
               

               
Conread position:
               
353-544
               

               
Cow position:
               
chr15:40171396-40171208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
57, 28
               

               
Conread position:
               
353-544
               

               
Cow position:
               
chr15:51910559-51910367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
56, 76
               

               
Conread position:
               
354-521
               

               
Cow position:
               
chr15:25066087-25066254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
55, 18
               

               
Conread position:
               
356-507
               

               
Cow position:
               
chr15:29811765-29811613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
356-538
               

               
Cow position:
               
chr15:36622682-36622511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
356-542
               

               
Cow position:
               
chr15:8753842-8754024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
53, 24
               

               
Conread position:
               
356-543
               

               
Cow position:
               
chr15:1082417-1082602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
47, 83
               

               
Conread position:
               
356-543
               

               
Cow position:
               
chr15:1129011-1128826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
47, 82
               

               
Conread position:
               
356-544
               

               
Cow position:
               
chr15:21911317-21911131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
161, 54
               

               
Conread position:
               
356-544
               

               
Cow position:
               
chr15:26933024-26933208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
357-540
               

               
Cow position:
               
chr15:6550633-6550452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
52, 148
               

               
Conread position:
               
361-519
               

               
Cow position:
               
chr15:16340519-16340359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
361-542
               

               
Cow position:
               
chr15:8001582-8001399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
23, 153
               

               
Conread position:
               
361-544
               

               
Cow position:
               
chr15:28071451-28071274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
52, 150
               

               
Conread position:
               
361-544
               

               
Cow position:
               
chr15:30726254-30726073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
55, 150
               

               
Conread position:
               
364-517
               

               
Cow position:
               
chr15:16741045-16741200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
364-540
               

               
Cow position:
               
chr15:48556706-48556881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
12, 143
               

               
Conread position:
               
364-544
               

               
Cow position:
               
chr15:30045393-30045573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
10, 101
               

               
Conread position:
               
368-522
               

               
Cow position:
               
chr15:3791793-3791948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
368-544
               

               
Cow position:
               
chr15:40344259-40344084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
41, 148
               
385-517UCSC Genome Browser

               
Conread position:
               

               

               
Cow position:
               
chr15:24968756-24968622 (view  custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
13, 63
               
386-519UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr15:11628412-11628545 (view  custom track)

               
               
               
Alignm length:
135

               
               
               
Alignm identity:
108

               
               
               
Alignm E-value:
2e-27

               
               
               
Alignm gaps (pig, cow):
23, 62
389-544UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr15:25908181-25908027 (view  custom track)

               
               
               
Alignm length:
159

               
               
               
Alignm identity:
125

               
               
               
Alignm E-value:
3e-28

               
               
               
Alignm gaps (pig, cow):
21, 124

               
               
               Conread position:411-517
               
               
               Cow position:chr15:40006507-40006614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:88
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:347-540
               
               
               Cow position:chr16:28468498-28468309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):62, 9

               
               
               Conread position:347-540
               
               
               Cow position:chr16:37478236-37478047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):62, 9

               
               
               Conread position:347-542
               
               
               Cow position:chr16:2724599-2724408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):62, 9

               
               
               Conread position:350-540
               
               
               Cow position:chr16:43562770-43562582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):59, 156

               
               
               Conread position:353-515
               
               
               Cow position:chr16:12736909-12737072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:353-516
               
               
               Cow position:chr16:54231719-54231555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:353-517
               
               
               Cow position:chr16:15187693-15187857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-518
               
               
               Cow position:chr16:26666333-26666498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):56, 162

               
               
               Conread position:353-519
               
               
               Cow position:chr16:37058384-37058219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:353-519
               
               
               Cow position:chr16:41036397-41036232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):30, 104

               
               
               Conread position:353-539
               
               
               Cow position:chr16:7467241-7467421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:353-540
               
               
               Cow position:chr16:839900-840084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):56, 122

               
               
               Conread position:353-540
               
               
               Cow position:chr16:1563759-1563574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr16:1734368-1734553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr16:3769382-3769194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):63, 156

               
               
               Conread position:353-540
               
               
               Cow position:chr16:4426719-4426904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr16:5350879-5350694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr16:5435454-5435639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr16:5488500-5488685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):56, 152

               
               
               Conread position:353-540
               
               
               Cow position:chr16:12160654-12160470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):56, 156

               
               
               Conread position:353-540
               
               
               Cow position:chr16:14352055-14351870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr16:15979749-15979564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr16:25344608-25344793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr16:39033716-39033531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):57, 156

               
               
               Conread position:353-540
               
               
               Cow position:chr16:40293542-40293356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):15, 154

               
               
               Conread position:353-540
               
               
               Cow position:chr16:43894633-43894447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):23, 154

               
               
               Conread position:353-540
               
               
               Cow position:chr16:46101990-46101805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):58, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr16:48411264-48411449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr16:51640878-51641061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):56, 19

               
               
               Conread position:353-540
               
               
               Cow position:chr16:52526860-52527045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-541
               
               
               Cow position:chr16:4722108-4722294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):56, 157

               
               
               Conread position:353-544
               
               
               Cow position:chr16:237108-237295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):60, 23

               
               
               Conread position:353-544
               
               
               Cow position:chr16:6380009-6379821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):60, 68

               
               
               Conread position:353-544
               
               
               Cow position:chr16:11007334-11007530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):60, 71

               
               
               Conread position:353-544
               
               
               Cow position:chr16:15495083-15495270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):152, 0

               
               
               Conread position:353-544
               
               
               Cow position:chr16:31425687-31425876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:163
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 159

               
               
               Conread position:353-544
               
               
               Cow position:chr16:37670878-37670691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):60, 39

               
               
               Conread position:353-544
               
               
               Cow position:chr16:54228658-54228469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):56, 6

               
               
               Conread position:353-545
               
               
               Cow position:chr16:17142032-17142223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):55, 72

               
               
               Conread position:353-545
               
               
               Cow position:chr16:47367615-47367803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):60, 151

               
               
               Conread position:353-546
               
               
               Cow position:chr16:25444505-25444696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-546
               
               
               Cow position:chr16:42074269-42074073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:353-547
               
               
               Cow position:chr16:8813476-8813284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-551
               
               
               Cow position:chr16:23985942-23986137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:354-516
               
               
               Cow position:chr16:18948718-18948875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):55, 38

               
               
               Conread position:354-540
               
               
               Cow position:chr16:11633214-11633030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):55, 152

               
               
               Conread position:354-540
               
               
               Cow position:chr16:16624985-16625170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):55, 74

               
               
               Conread position:355-544
               
               
               Cow position:chr16:19798064-19797874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):54, 157

               
               
               Conread position:355-544
               
               
               Cow position:chr16:49516150-49515963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:155
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):58, 7

               
               
               Conread position:356-520
               
               
               Cow position:chr16:7457350-7457190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:356-522
               
               
               Cow position:chr16:39615854-39616020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):55, 158

               
               
               Conread position:356-522
               
               
               Cow position:chr16:42079718-42079555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):148, 31

               
               
               Conread position:356-540
               
               
               Cow position:chr16:10440871-10441052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):55, 147

               
               
               Conread position:356-540
               
               
               Cow position:chr16:24240768-24240586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):58, 150

               
               
               Conread position:356-540
               
               
               Cow position:chr16:29050277-29050459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):53, 150

               
               
               Conread position:356-542
               
               
               Cow position:chr16:27013029-27013213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):53, 155

               
               
               Conread position:356-545
               
               
               Cow position:chr16:51400922-51400738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):148, 24

               
               
               Conread position:358-493
               
               
               Cow position:chr16:49230647-49230510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:361-511
               
               
               Cow position:chr16:42733648-42733498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):52, 11

               
               
               Conread position:361-517
               
               
               Cow position:chr16:9417500-9417657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):20, 149

               
               
               Conread position:361-540
               
               
               Cow position:chr16:37446067-37445890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):48, 148

               
               
               Conread position:361-549
               
               
               Cow position:chr16:45798984-45799172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):48, 186

               
               
               Conread position:368-518
               
               
               Cow position:chr16:46223867-46223717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):41, 143

               
               
               Conread position:368-540
               
               
               Cow position:chr16:2480511-2480341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):41, 138

               
               
               Conread position:372-542
               
               
               Cow position:chr16:42745836-42745668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):37, 134

               
               
               Conread position:386-544
               
               
               Cow position:chr16:14029499-14029339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:388-544
               
               
               Cow position:chr16:20968223-20968069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):21, 118

               
               
               Conread position:392-544
               
               
               Cow position:chr16:3632734-3632885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):17, 117

               
               
               Conread position:407-540
               
               
               Cow position:chr16:45683371-45683501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:353-502
               
               
               Cow position:chr17:29950401-29950551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:353-504
               
               
               Cow position:chr17:138797-138943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):56, 27

               
               
               Conread position:353-514
               
               
               Cow position:chr17:17221502-17221663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):60, 101

               
               
               Conread position:353-514
               
               
               Cow position:chr17:18591610-18591760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):84, 59

               
               
               Conread position:353-517
               
               
               Cow position:chr17:145017-144853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):60, 76

               
               
               Conread position:353-519
               
               
               Cow position:chr17:18814344-18814512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):21, 73

               
               
               Conread position:353-522
               
               
               Cow position:chr17:18471359-18471535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):55, 166

               
               
               Conread position:353-537
               
               
               Cow position:chr17:27978293-27978478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):155, 0

               
               
               Conread position:353-539
               
               
               Cow position:chr17:2583581-2583760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:353-539
               
               
               Cow position:chr17:3197441-3197257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):56, 161

               
               
               Conread position:353-540
               
               
               Cow position:chr17:2201486-2201671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr17:11083946-11083761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr17:14243015-14243201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):56, 75

               
               
               Conread position:353-540
               
               
               Cow position:chr17:15328470-15328655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):56, 167

               
               
               Conread position:353-540
               
               
               Cow position:chr17:18099885-18099700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr17:25739485-25739670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-542
               
               
               Cow position:chr17:17128194-17128380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):160, 0

               
               
               Conread position:353-544
               
               
               Cow position:chr17:1672487-1672675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):56, 98

               
               
               Conread position:353-544
               
               
               Cow position:chr17:1883433-1883621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):56, 91

               
               
               Conread position:353-544
               
               
               Cow position:chr17:4211118-4211310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:153
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:353-544
               
               
               Cow position:chr17:8449900-8450089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:160
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 117

               
               
               Conread position:353-544
               
               
               Cow position:chr17:29156562-29156759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:157
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:353-544
               
               
               Cow position:chr17:33934633-33934437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:159
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:353-544
               
               
               Cow position:chr17:36790254-36790444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):56, 159

               
               
               Conread position:353-545
               
               
               Cow position:chr17:38829070-38829261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):62, 69

               
               
               Conread position:356-508
               
               
               Cow position:chr17:40810943-40811088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):53, 80

               
               
               Conread position:356-545
               
               
               Cow position:chr17:2839214-2839397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):53, 101

               
               
               Conread position:357-502
               
               
               Cow position:chr17:39629793-39629644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):21, 112

               
               
               Conread position:357-544
               
               
               Cow position:chr17:19369634-19369819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):58, 26

               
               
               Conread position:357-544
               
               
               Cow position:chr17:44482041-44482230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):52, 81

               
               
               Conread position:359-518
               
               
               Cow position:chr17:20083235-20083074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:361-518
               
               
               Cow position:chr17:2698752-2698906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):48, 59

               
               
               Conread position:361-519
               
               
               Cow position:chr17:7054066-7053907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):48, 35

               
               
               Conread position:361-543
               
               
               Cow position:chr17:20209684-20209498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):35, 156

               
               
               Conread position:364-532
               
               
               Cow position:chr17:1219752-1219584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):31, 36

               
               
               Conread position:364-544
               
               
               Cow position:chr17:40801948-40802125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):45, 98

               
               
               Conread position:368-542
               
               
               Cow position:chr17:41318967-41318794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):11, 144

               
               
               Conread position:369-518
               
               
               Cow position:chr17:997971-997822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):40, 137

               
               
               Conread position:369-544
               
               
               Cow position:chr17:23884598-23884430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):40, 72

               
               
               Conread position:372-504
               
               
               Cow position:chr17:5748634-5748500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:372-544
               
               
               Cow position:chr17:3780858-3781029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):37, 139

               
               
               Conread position:373-551
               
               
               Cow position:chr17:43227540-43227717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):36, 146

               
               
               Conread position:378-517
               
               
               Cow position:chr17:38629339-38629482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):19, 137

               
               
               Conread position:382-544
               
               
               Cow position:chr17:41014380-41014539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:388-542
               
               
               Cow position:chr17:32457234-32457079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):100, 94

               
               
               Conread position:392-544
               
               
               Cow position:chr17:10843499-10843651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:408-544
               
               
               Cow position:chr17:34000129-33999996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:433-544
               
               
               Cow position:chr17:4107796-4107685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):18, 42

               
               
               Conread position:351-515
               
               
               Cow position:chr18:36187983-36187818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):58, 81

               
               
               Conread position:352-544
               
               
               Cow position:chr18:16025247-16025054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:156
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):57, 166

               
               
               Conread position:353-511
               
               
               Cow position:chr18:43129500-43129654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):56, 27

               
               
               Conread position:353-517
               
               
               Cow position:chr18:16094297-16094461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-517
               
               
               Cow position:chr18:29863192-29863028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-517
               
               
               Cow position:chr18:36512046-36512207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):56, 87

               
               
               Conread position:353-518
               
               
               Cow position:chr18:5076770-5076607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):57, 68

               
               
               Conread position:353-518
               
               
               Cow position:chr18:14419389-14419554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):56, 152

               
               
               Conread position:353-518
               
               
               Cow position:chr18:23802435-23802600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):56, 71

               
               
               Conread position:353-518
               
               
               Cow position:chr18:36776688-36776853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-518
               
               
               Cow position:chr18:41837678-41837513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-518
               
               
               Cow position:chr18:43430418-43430580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:353-518
               
               
               Cow position:chr18:54033120-54033285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-519
               
               
               Cow position:chr18:30035317-30035152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):60, 96

               
               
               Conread position:353-523
               
               
               Cow position:chr18:39494200-39494368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):56, 88

               
               
               Conread position:353-540
               
               
               Cow position:chr18:5536384-5536570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):23, 158

               
               
               Conread position:353-540
               
               
               Cow position:chr18:6733553-6733369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr18:14127874-14127690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):56, 89

               
               
               Conread position:353-540
               
               
               Cow position:chr18:16173201-16173016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):60, 152

               
               
               Conread position:353-540
               
               
               Cow position:chr18:23701391-23701206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr18:26305685-26305869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):56, 27

               
               
               Conread position:353-540
               
               
               Cow position:chr18:27990169-27990354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):56, 156

               
               
               Conread position:353-540
               
               
               Cow position:chr18:28968877-28968692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):56, 158

               
               
               Conread position:353-540
               
               
               Cow position:chr18:37509374-37509559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr18:38158130-38157945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-544
               
               
               Cow position:chr18:2853375-2853187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):56, 7

               
               
               Conread position:353-544
               
               
               Cow position:chr18:33607643-33607835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):152, 25

               
               
               Conread position:356-513
               
               
               Cow position:chr18:36477196-36477349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):53, 62

               
               
               Conread position:356-517
               
               
               Cow position:chr18:13508654-13508491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:356-518
               
               
               Cow position:chr18:33157951-33158113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):53, 155

               
               
               Conread position:356-538
               
               
               Cow position:chr18:25354936-25355116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):53, 150

               
               
               Conread position:356-540
               
               
               Cow position:chr18:29586197-29586015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):53, 158

               
               
               Conread position:356-544
               
               
               Cow position:chr18:12269568-12269756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:155
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):20, 65

               
               
               Conread position:356-544
               
               
               Cow position:chr18:36122447-36122257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):58, 97

               
               
               Conread position:356-546
               
               
               Cow position:chr18:44261483-44261672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:163
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 19

               
               
               Conread position:357-517
               
               
               Cow position:chr18:32245921-32245746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:357-540
               
               
               Cow position:chr18:51485003-51485184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):52, 149

               
               
               Conread position:358-542
               
               
               Cow position:chr18:32210395-32210216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):51, 68

               
               
               Conread position:358-544
               
               
               Cow position:chr18:14047786-14047968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:150
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:359-511
               
               
               Cow position:chr18:36648813-36648965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):50, 61

               
               
               Conread position:360-519
               
               
               Cow position:chr18:26335742-26335585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):49, 68

               
               
               Conread position:361-515
               
               
               Cow position:chr18:970192-970343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):51, 11

               
               
               Conread position:361-519
               
               
               Cow position:chr18:28084467-28084626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:361-520
               
               
               Cow position:chr18:3081530-3081370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:362-514
               
               
               Cow position:chr18:15485781-15485628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:368-518
               
               
               Cow position:chr18:51487482-51487332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):41, 144

               
               
               Conread position:368-542
               
               
               Cow position:chr18:17323802-17323974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):45, 143

               
               
               Conread position:370-544
               
               
               Cow position:chr18:43284884-43284718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:372-517
               
               
               Cow position:chr18:29946881-29947028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:372-522
               
               
               Cow position:chr18:12241252-12241400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):136, 31

               
               
               Conread position:372-539
               
               
               Cow position:chr18:27833995-27833830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):37, 134

               
               
               Conread position:375-544
               
               
               Cow position:chr18:9364984-9365144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):37, 78

               
               
               Conread position:384-544
               
               
               Cow position:chr18:27800439-27800280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):15, 126

               
               
               Conread position:399-523
               
               
               Cow position:chr18:44229771-44229646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:102
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:406-507
               
               
               Cow position:chr18:51692355-51692253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:85
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:409-544
               
               
               Cow position:chr18:51713594-51713462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:350-540
               
               
               Cow position:chr19:33944981-33945169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):59, 161

               
               
               Conread position:352-511
               
               
               Cow position:chr19:32952241-32952398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):86, 51

               
               
               Conread position:352-540
               
               
               Cow position:chr19:12652293-12652478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):57, 7

               
               
               Conread position:352-540
               
               
               Cow position:chr19:28794913-28794728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):57, 8

               
               
               Conread position:353-511
               
               
               Cow position:chr19:7610027-7610185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:353-517
               
               
               Cow position:chr19:20403701-20403865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):60, 158

               
               
               Conread position:353-517
               
               
               Cow position:chr19:35843272-35843436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):87, 65

               
               
               Conread position:353-517
               
               
               Cow position:chr19:50833485-50833321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):56, 152

               
               
               Conread position:353-518
               
               
               Cow position:chr19:14157826-14157991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):56, 161

               
               
               Conread position:353-518
               
               
               Cow position:chr19:39394619-39394784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):60, 152

               
               
               Conread position:353-519
               
               
               Cow position:chr19:42866883-42867049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):60, 158

               
               
               Conread position:353-522
               
               
               Cow position:chr19:20672177-20672005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:143
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:353-540
               
               
               Cow position:chr19:207918-208098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):56, 101

               
               
               Conread position:353-540
               
               
               Cow position:chr19:930237-930422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):56, 161

               
               
               Conread position:353-540
               
               
               Cow position:chr19:4388998-4389177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):56, 87

               
               
               Conread position:353-540
               
               
               Cow position:chr19:33876834-33877019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):56, 161

               
               
               Conread position:353-540
               
               
               Cow position:chr19:34905907-34905722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr19:36351687-36351871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):56, 19

               
               
               Conread position:353-540
               
               
               Cow position:chr19:39182122-39181931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:353-541
               
               
               Cow position:chr19:29366946-29367132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):56, 156

               
               
               Conread position:353-541
               
               
               Cow position:chr19:29624454-29624640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):56, 156

               
               
               Conread position:353-543
               
               
               Cow position:chr19:50561482-50561669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):56, 76

               
               
               Conread position:353-544
               
               
               Cow position:chr19:46821270-46821459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:154
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):156, 173

               
               
               Conread position:353-547
               
               
               Cow position:chr19:2269883-2269691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):56, 156

               
               
               Conread position:354-544
               
               
               Cow position:chr19:42725438-42725621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:155
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:355-511
               
               
               Cow position:chr19:32208805-32208962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:356-517
               
               
               Cow position:chr19:48534151-48534307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):53, 41

               
               
               Conread position:356-519
               
               
               Cow position:chr19:1663493-1663653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):152, 53

               
               
               Conread position:356-536
               
               
               Cow position:chr19:38894140-38894319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):24, 16

               
               
               Conread position:356-540
               
               
               Cow position:chr19:14580701-14580884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):56, 155

               
               
               Conread position:356-540
               
               
               Cow position:chr19:40790934-40790755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):53, 84

               
               
               Conread position:356-542
               
               
               Cow position:chr19:3032917-3032732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):24, 159

               
               
               Conread position:357-544
               
               
               Cow position:chr19:30473720-30473538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:156
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):56, 18

               
               
               Conread position:358-507
               
               
               Cow position:chr19:197437-197587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:358-518
               
               
               Cow position:chr19:44216428-44216267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:361-507
               
               
               Cow position:chr19:39603060-39602912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:361-519
               
               
               Cow position:chr19:9098501-9098343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):48, 153

               
               
               Conread position:361-544
               
               
               Cow position:chr19:2261020-2260842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):52, 19

               
               
               Conread position:361-544
               
               
               Cow position:chr19:55217231-55217414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):48, 145

               
               
               Conread position:364-540
               
               
               Cow position:chr19:40849060-40848886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):43, 142

               
               
               Conread position:371-519
               
               
               Cow position:chr19:42870795-42870943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):38, 140

               
               
               Conread position:374-518
               
               
               Cow position:chr19:39076877-39077021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):39, 137

               
               
               Conread position:408-540
               
               
               Cow position:chr19:12551622-12551493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:410-540
               
               
               Cow position:chr19:42298022-42297894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:352-544
               
               
               Cow position:chr2:63274816-63274623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):66, 7

               
               
               Conread position:353-501
               
               
               Cow position:chr2:5917140-5917286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):61, 95

               
               
               Conread position:353-504
               
               
               Cow position:chr2:2590825-2590678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):60, 28

               
               
               Conread position:353-512
               
               
               Cow position:chr2:41009563-41009402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:353-514
               
               
               Cow position:chr2:6698375-6698214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:139
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):56, 158

               
               
               Conread position:353-514
               
               
               Cow position:chr2:45913526-45913364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:136
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:353-514
               
               
               Cow position:chr2:73992587-73992749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:353-517
               
               
               Cow position:chr2:2018421-2018585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):60, 153

               
               
               Conread position:353-517
               
               
               Cow position:chr2:13067143-13066979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-517
               
               
               Cow position:chr2:15060120-15059959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):56, 95

               
               
               Conread position:353-517
               
               
               Cow position:chr2:33390256-33390420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):56, 158

               
               
               Conread position:353-517
               
               
               Cow position:chr2:34572363-34572197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):60, 95

               
               
               Conread position:353-517
               
               
               Cow position:chr2:53003344-53003180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):56, 156

               
               
               Conread position:353-518
               
               
               Cow position:chr2:16497256-16497091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-518
               
               
               Cow position:chr2:21169207-21169368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):23, 61

               
               
               Conread position:353-518
               
               
               Cow position:chr2:21981894-21981729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):56, 161

               
               
               Conread position:353-518
               
               
               Cow position:chr2:53557027-53557191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):57, 44

               
               
               Conread position:353-518
               
               
               Cow position:chr2:67743754-67743919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):56, 158

               
               
               Conread position:353-519
               
               
               Cow position:chr2:9370982-9370815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:138
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:353-521
               
               
               Cow position:chr2:49481494-49481324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):60, 89

               
               
               Conread position:353-539
               
               
               Cow position:chr2:31858332-31858148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr2:279382-279202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:353-540
               
               
               Cow position:chr2:981862-982047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr2:1186994-1186809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr2:8121561-8121745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):60, 19

               
               
               Conread position:353-540
               
               
               Cow position:chr2:10183366-10183183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:353-540
               
               
               Cow position:chr2:15963686-15963501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr2:17807705-17807521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):56, 94

               
               
               Conread position:353-540
               
               
               Cow position:chr2:24928245-24928430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr2:25590392-25590207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr2:25885687-25885504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):56, 113

               
               
               Conread position:353-540
               
               
               Cow position:chr2:28646764-28646579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr2:29218826-29219010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):56, 14

               
               
               Conread position:353-540
               
               
               Cow position:chr2:32062875-32062690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr2:36983514-36983699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):56, 72

               
               
               Conread position:353-540
               
               
               Cow position:chr2:42667844-42667660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):56, 161

               
               
               Conread position:353-540
               
               
               Cow position:chr2:43209992-43210177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):60, 161

               
               
               Conread position:353-540
               
               
               Cow position:chr2:46182673-46182489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):56, 69

               
               
               Conread position:353-540
               
               
               Cow position:chr2:51921703-51921517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):56, 19

               
               
               Conread position:353-540
               
               
               Cow position:chr2:65935347-65935162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):56, 158

               
               
               Conread position:353-540
               
               
               Cow position:chr2:70524618-70524803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr2:78301533-78301356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):60, 73

               
               
               Conread position:353-541
               
               
               Cow position:chr2:31407483-31407297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-541
               
               
               Cow position:chr2:49630184-49630371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):56, 154

               
               
               Conread position:353-541
               
               
               Cow position:chr2:53542801-53542987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):56, 158

               
               
               Conread position:353-542
               
               
               Cow position:chr2:9220052-9219865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):43, 18

               
               
               Conread position:353-542
               
               
               Cow position:chr2:16718041-16717854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-542
               
               
               Cow position:chr2:38260341-38260151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):56, 184

               
               
               Conread position:353-544
               
               
               Cow position:chr2:22080766-22080954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):56, 27

               
               
               Conread position:353-544
               
               
               Cow position:chr2:30909360-30909549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:160
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 161

               
               
               Conread position:353-544
               
               
               Cow position:chr2:44476627-44476438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-544
               
               
               Cow position:chr2:62819620-62819430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):56, 158

               
               
               Conread position:353-559
               
               
               Cow position:chr2:12221430-12221229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):56, 98

               
               
               Conread position:355-544
               
               
               Cow position:chr2:55876504-55876696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:155
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:356-501
               
               
               Cow position:chr2:18062526-18062380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:356-511
               
               
               Cow position:chr2:46940132-46939976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:356-518
               
               
               Cow position:chr2:56054607-56054768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):51, 110

               
               
               Conread position:356-519
               
               
               Cow position:chr2:32432500-32432345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:356-536
               
               
               Cow position:chr2:38207158-38206980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):53, 74

               
               
               Conread position:356-544
               
               
               Cow position:chr2:383255-383069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):24, 74

               
               
               Conread position:356-544
               
               
               Cow position:chr2:14807230-14807048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):53, 147

               
               
               Conread position:356-544
               
               
               Cow position:chr2:31124880-31125073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:154
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:356-544
               
               
               Cow position:chr2:32417760-32417582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:356-544
               
               
               Cow position:chr2:62735034-62735220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):53, 155

               
               
               Conread position:356-548
               
               
               Cow position:chr2:53849884-53850067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:357-518
               
               
               Cow position:chr2:4255424-4255257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):58, 45

               
               
               Conread position:357-519
               
               
               Cow position:chr2:36867693-36867529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:357-540
               
               
               Cow position:chr2:2603527-2603709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):52, 149

               
               
               Conread position:357-544
               
               
               Cow position:chr2:42839212-42839027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):52, 149

               
               
               Conread position:358-517
               
               
               Cow position:chr2:28796713-28796871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):56, 93

               
               
               Conread position:358-544
               
               
               Cow position:chr2:19961181-19961368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:151
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:361-514
               
               
               Cow position:chr2:871376-871226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:361-518
               
               
               Cow position:chr2:76985612-76985455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):48, 150

               
               
               Conread position:361-540
               
               
               Cow position:chr2:9700394-9700571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):48, 145

               
               
               Conread position:361-542
               
               
               Cow position:chr2:30187865-30187686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):48, 105

               
               
               Conread position:361-544
               
               
               Cow position:chr2:16414989-16415169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):48, 9

               
               
               Conread position:361-544
               
               
               Cow position:chr2:75913751-75913935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:361-557
               
               
               Cow position:chr2:32753686-32753496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):48, 19

               
               
               Conread position:362-517
               
               
               Cow position:chr2:27075476-27075632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:362-519
               
               
               Cow position:chr2:9407418-9407576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):46, 58

               
               
               Conread position:363-547
               
               
               Cow position:chr2:15751170-15751352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):46, 143

               
               
               Conread position:364-540
               
               
               Cow position:chr2:50080438-50080612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):45, 142

               
               
               Conread position:367-504
               
               
               Cow position:chr2:72931221-72931075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:368-518
               
               
               Cow position:chr2:30924341-30924492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):8, 57

               
               
               Conread position:368-518
               
               
               Cow position:chr2:79978214-79978064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):41, 138

               
               
               Conread position:368-540
               
               
               Cow position:chr2:12286073-12286243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):41, 138

               
               
               Conread position:371-537
               
               
               Cow position:chr2:63058908-63059075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):42, 24

               
               
               Conread position:372-516
               
               
               Cow position:chr2:68359726-68359582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):37, 139

               
               
               Conread position:372-517
               
               
               Cow position:chr2:72737276-72737137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:372-543
               
               
               Cow position:chr2:36997248-36997419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):14, 140

               
               
               Conread position:373-544
               
               
               Cow position:chr2:64766035-64765865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):36, 93

               
               
               Conread position:375-518
               
               
               Cow position:chr2:21210614-21210756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):34, 136

               
               
               Conread position:375-522
               
               
               Cow position:chr2:35949533-35949377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:375-544
               
               
               Cow position:chr2:5756239-5756405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):40, 48

               
               
               Conread position:376-544
               
               
               Cow position:chr2:62225300-62225469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):34, 143

               
               
               Conread position:378-522
               
               
               Cow position:chr2:55470850-55470706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:381-519
               
               
               Cow position:chr2:7466301-7466440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):27, 9

               
               
               Conread position:382-523
               
               
               Cow position:chr2:194056-193916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):32, 15

               
               
               Conread position:386-547
               
               
               Cow position:chr2:71119341-71119500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):23, 68

               
               
               Conread position:387-540
               
               
               Cow position:chr2:24876307-24876156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):22, 119

               
               
               Conread position:387-540
               
               
               Cow position:chr2:81259801-81259953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):11, 121

               
               
               Conread position:388-544
               
               
               Cow position:chr2:73467473-73467324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):25, 63

               
               
               Conread position:390-540
               
               
               Cow position:chr2:57557795-57557647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):19, 116

               
               
               Conread position:393-544
               
               
               Cow position:chr2:84866630-84866775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:396-544
               
               
               Cow position:chr2:34642583-34642732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:398-538
               
               
               Cow position:chr2:17426326-17426462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:353-508
               
               
               Cow position:chr20:13955002-13955161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:353-517
               
               
               Cow position:chr20:10839077-10838917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):155, 39

               
               
               Conread position:353-519
               
               
               Cow position:chr20:26999876-27000044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:353-520
               
               
               Cow position:chr20:18322176-18322015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:353-520
               
               
               Cow position:chr20:19364506-19364334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:353-522
               
               
               Cow position:chr20:9996917-9997089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:353-536
               
               
               Cow position:chr20:28165223-28165405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):56, 168

               
               
               Conread position:353-538
               
               
               Cow position:chr20:15295399-15295581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):56, 84

               
               
               Conread position:353-540
               
               
               Cow position:chr20:6550617-6550432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr20:7597476-7597296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):56, 80

               
               
               Conread position:353-540
               
               
               Cow position:chr20:17657851-17657666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr20:22209002-22209187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr20:23466268-23466084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):56, 113

               
               
               Conread position:353-540
               
               
               Cow position:chr20:28725140-28725325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):28, 80

               
               
               Conread position:353-540
               
               
               Cow position:chr20:33563798-33563983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):56, 156

               
               
               Conread position:353-540
               
               
               Cow position:chr20:35036999-35036814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-541
               
               
               Cow position:chr20:36311122-36310936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-544
               
               
               Cow position:chr20:5077331-5077525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:159
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):38, 172

               
               
               Conread position:353-544
               
               
               Cow position:chr20:12155980-12155802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:353-544
               
               
               Cow position:chr20:12333062-12333244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:353-547
               
               
               Cow position:chr20:14877441-14877631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:353-547
               
               
               Cow position:chr20:21015614-21015418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):107, 68

               
               
               Conread position:354-519
               
               
               Cow position:chr20:10035364-10035202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:354-544
               
               
               Cow position:chr20:25330782-25330594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):57, 15

               
               
               Conread position:355-511
               
               
               Cow position:chr20:27994141-27993985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:356-514
               
               
               Cow position:chr20:13575165-13575006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):33, 16

               
               
               Conread position:356-514
               
               
               Cow position:chr20:15089988-15089828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):58, 68

               
               
               Conread position:356-519
               
               
               Cow position:chr20:32351984-32352143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:356-544
               
               
               Cow position:chr20:23106790-23106975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):39, 48

               
               
               Conread position:357-518
               
               
               Cow position:chr20:3468766-3468922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:358-508
               
               
               Cow position:chr20:14473060-14472913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):55, 25

               
               
               Conread position:358-511
               
               
               Cow position:chr20:42254659-42254505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:358-544
               
               
               Cow position:chr20:3782318-3782131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):38, 179

               
               
               Conread position:359-544
               
               
               Cow position:chr20:7512549-7512371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):50, 36

               
               
               Conread position:359-551
               
               
               Cow position:chr20:6258907-6258717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):152, 27

               
               
               Conread position:360-540
               
               
               Cow position:chr20:10921538-10921360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):49, 149

               
               
               Conread position:361-517
               
               
               Cow position:chr20:36418333-36418177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):54, 31

               
               
               Conread position:361-518
               
               
               Cow position:chr20:13789453-13789608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):52, 100

               
               
               Conread position:361-540
               
               
               Cow position:chr20:23802539-23802716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):48, 145

               
               
               Conread position:363-542
               
               
               Cow position:chr20:2178976-2178798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):32, 161

               
               
               Conread position:367-515
               
               
               Cow position:chr20:27896055-27895905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:367-542
               
               
               Cow position:chr20:7568577-7568401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):143, 170

               
               
               Conread position:367-542
               
               
               Cow position:chr20:7593064-7592887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):37, 171

               
               
               Conread position:368-517
               
               
               Cow position:chr20:13325490-13325639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):41, 146

               
               
               Conread position:371-540
               
               
               Cow position:chr20:5538544-5538710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:372-544
               
               
               Cow position:chr20:24522587-24522750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:382-518
               
               
               Cow position:chr20:13055922-13055789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):32, 85

               
               
               Conread position:388-521
               
               
               Cow position:chr20:15240623-15240489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:398-517
               
               
               Cow position:chr20:12553132-12553012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):16, 69

               
               
               Conread position:318-517
               
               
               Cow position:chr21:10239932-10239732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:350-518
               
               
               Cow position:chr21:42558262-42558430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):59, 161

               
               
               Conread position:351-540
               
               
               Cow position:chr21:28915486-28915300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):58, 21

               
               
               Conread position:353-514
               
               
               Cow position:chr21:13749649-13749812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:353-517
               
               
               Cow position:chr21:5020637-5020797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):56, 100

               
               
               Conread position:353-517
               
               
               Cow position:chr21:17721072-17721234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:353-517
               
               
               Cow position:chr21:36534717-36534553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-518
               
               
               Cow position:chr21:27608211-27608046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-518
               
               
               Cow position:chr21:30565236-30565401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-518
               
               
               Cow position:chr21:30595599-30595434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-518
               
               
               Cow position:chr21:39700942-39700777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-518
               
               
               Cow position:chr21:48234825-48234662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):155, 57

               
               
               Conread position:353-519
               
               
               Cow position:chr21:20263185-20263018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:353-519
               
               
               Cow position:chr21:31974628-31974792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:353-520
               
               
               Cow position:chr21:13111631-13111463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:353-536
               
               
               Cow position:chr21:10570778-10570959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-538
               
               
               Cow position:chr21:43403947-43403764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):56, 169

               
               
               Conread position:353-540
               
               
               Cow position:chr21:149638-149823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):56, 161

               
               
               Conread position:353-540
               
               
               Cow position:chr21:1196029-1196213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):56, 100

               
               
               Conread position:353-540
               
               
               Cow position:chr21:3782264-3782448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):56, 69

               
               
               Conread position:353-540
               
               
               Cow position:chr21:4812853-4812668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):56, 156

               
               
               Conread position:353-540
               
               
               Cow position:chr21:10853756-10853941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr21:17144179-17144364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr21:27066108-27065923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr21:33257047-33257232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr21:44762190-44762008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:353-540
               
               
               Cow position:chr21:47648834-47649017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):24, 45

               
               
               Conread position:353-542
               
               
               Cow position:chr21:3766279-3766089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):56, 70

               
               
               Conread position:353-544
               
               
               Cow position:chr21:12802621-12802426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:158
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):98, 59

               
               
               Conread position:353-544
               
               
               Cow position:chr21:23783913-23783724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):66, 158

               
               
               Conread position:353-544
               
               
               Cow position:chr21:28908648-28908461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):56, 71

               
               
               Conread position:353-544
               
               
               Cow position:chr21:33983784-33983593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:162
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 169

               
               
               Conread position:353-544
               
               
               Cow position:chr21:44219171-44219357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):60, 19

               
               
               Conread position:353-544
               
               
               Cow position:chr21:46974242-46974054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:155
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):60, 109

               
               
               Conread position:353-544
               
               
               Cow position:chr21:47360680-47360491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):60, 15

               
               
               Conread position:354-511
               
               
               Cow position:chr21:13199423-13199575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:354-533
               
               
               Cow position:chr21:31275834-31276011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:149
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):59, 157

               
               
               Conread position:355-519
               
               
               Cow position:chr21:18829389-18829228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):54, 27

               
               
               Conread position:356-541
               
               
               Cow position:chr21:6965978-6965795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):53, 153

               
               
               Conread position:356-541
               
               
               Cow position:chr21:13735667-13735485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):149, 0

               
               
               Conread position:356-544
               
               
               Cow position:chr21:28028124-28028312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:162
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 106

               
               
               Conread position:356-546
               
               
               Cow position:chr21:37298634-37298823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:157
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):53, 110

               
               
               Conread position:357-544
               
               
               Cow position:chr21:2419692-2419877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):57, 15

               
               
               Conread position:358-514
               
               
               Cow position:chr21:23448745-23448902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:358-544
               
               
               Cow position:chr21:31512775-31512591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):51, 148

               
               
               Conread position:360-540
               
               
               Cow position:chr21:3253132-3253309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):53, 115

               
               
               Conread position:361-519
               
               
               Cow position:chr21:25992157-25991995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:361-520
               
               
               Cow position:chr21:5596289-5596450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:361-531
               
               
               Cow position:chr21:46968227-46968058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):61, 72

               
               
               Conread position:361-543
               
               
               Cow position:chr21:21412090-21411918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):169, 53

               
               
               Conread position:362-544
               
               
               Cow position:chr21:28441943-28442131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):146, 0

               
               
               Conread position:363-542
               
               
               Cow position:chr21:4191795-4191972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):46, 70

               
               
               Conread position:364-511
               
               
               Cow position:chr21:21000876-21000731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):73, 90

               
               
               Conread position:367-544
               
               
               Cow position:chr21:24697662-24697837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):42, 144

               
               
               Conread position:369-536
               
               
               Cow position:chr21:8890388-8890553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):40, 142

               
               
               Conread position:372-519
               
               
               Cow position:chr21:8419626-8419770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):41, 101

               
               
               Conread position:372-544
               
               
               Cow position:chr21:22855408-22855577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:144
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):41, 139

               
               
               Conread position:372-544
               
               
               Cow position:chr21:39764034-39764204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):37, 20

               
               
               Conread position:376-544
               
               
               Cow position:chr21:38899965-38900125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):156, 36

               
               
               Conread position:376-547
               
               
               Cow position:chr21:28988797-28988966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):33, 135

               
               
               Conread position:385-521
               
               
               Cow position:chr21:25813892-25813755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:406-511
               
               
               Cow position:chr21:13678176-13678071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:87
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:410-514
               
               
               Cow position:chr21:29015917-29015813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:87
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:347-518
               
               
               Cow position:chr22:6924345-6924514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):63, 9

               
               
               Conread position:347-540
               
               
               Cow position:chr22:36188366-36188555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):62, 9

               
               
               Conread position:353-503
               
               
               Cow position:chr22:29397402-29397553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:353-504
               
               
               Cow position:chr22:18603493-18603341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:353-509
               
               
               Cow position:chr22:14510199-14510043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):56, 152

               
               
               Conread position:353-511
               
               
               Cow position:chr22:2415216-2415375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:353-514
               
               
               Cow position:chr22:46033544-46033704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):59, 27

               
               
               Conread position:353-515
               
               
               Cow position:chr22:37032560-37032392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:353-517
               
               
               Cow position:chr22:8876358-8876529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):56, 165

               
               
               Conread position:353-518
               
               
               Cow position:chr22:1517724-1517558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):29, 154

               
               
               Conread position:353-518
               
               
               Cow position:chr22:1522156-1521990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):29, 154

               
               
               Conread position:353-518
               
               
               Cow position:chr22:10313945-10314107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:353-518
               
               
               Cow position:chr22:18811597-18811432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-518
               
               
               Cow position:chr22:32894226-32894391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):60, 158

               
               
               Conread position:353-518
               
               
               Cow position:chr22:34171768-34171933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):56, 71

               
               
               Conread position:353-519
               
               
               Cow position:chr22:14817323-14817164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:353-519
               
               
               Cow position:chr22:36541048-36540881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):56, 14

               
               
               Conread position:353-520
               
               
               Cow position:chr22:45845220-45845387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):28, 18

               
               
               Conread position:353-522
               
               
               Cow position:chr22:36192978-36193143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:353-540
               
               
               Cow position:chr22:3433645-3433460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):58, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr22:9269517-9269702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr22:12225583-12225401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:353-540
               
               
               Cow position:chr22:15308644-15308459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):56, 161

               
               
               Conread position:353-540
               
               
               Cow position:chr22:18807916-18807731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr22:19140388-19140203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):56, 152

               
               
               Conread position:353-540
               
               
               Cow position:chr22:19600488-19600298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):53, 158

               
               
               Conread position:353-540
               
               
               Cow position:chr22:21592741-21592926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr22:22048882-22048697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr22:27386238-27386053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):56, 73

               
               
               Conread position:353-540
               
               
               Cow position:chr22:29553865-29553681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):56, 91

               
               
               Conread position:353-540
               
               
               Cow position:chr22:31315861-31316046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr22:31331554-31331369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr22:32209930-32210115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr22:33951641-33951456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):56, 156

               
               
               Conread position:353-540
               
               
               Cow position:chr22:39465223-39465038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr22:42500048-42499863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-541
               
               
               Cow position:chr22:35910170-35909981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):56, 159

               
               
               Conread position:353-542
               
               
               Cow position:chr22:1591355-1591541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):56, 71

               
               
               Conread position:353-544
               
               
               Cow position:chr22:865409-865224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):61, 20

               
               
               Conread position:353-544
               
               
               Cow position:chr22:5331460-5331272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):155, 55

               
               
               Conread position:353-544
               
               
               Cow position:chr22:11305204-11305394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):56, 113

               
               
               Conread position:353-544
               
               
               Cow position:chr22:12728344-12728160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):60, 95

               
               
               Conread position:353-544
               
               
               Cow position:chr22:17834511-17834319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:156
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):166, 14

               
               
               Conread position:353-544
               
               
               Cow position:chr22:22285313-22285502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):56, 158

               
               
               Conread position:353-544
               
               
               Cow position:chr22:24817445-24817258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):56, 155

               
               
               Conread position:353-544
               
               
               Cow position:chr22:26167478-26167293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):84, 55

               
               
               Conread position:353-555
               
               
               Cow position:chr22:42994491-42994687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):56, 98

               
               
               Conread position:355-511
               
               
               Cow position:chr22:21935549-21935393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):54, 25

               
               
               Conread position:356-504
               
               
               Cow position:chr22:9371678-9371827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:356-508
               
               
               Cow position:chr22:5835868-5836020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:356-514
               
               
               Cow position:chr22:10361244-10361403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:356-516
               
               
               Cow position:chr22:12625238-12625078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):89, 155

               
               
               Conread position:356-518
               
               
               Cow position:chr22:26759281-26759443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):57, 155

               
               
               Conread position:356-538
               
               
               Cow position:chr22:3941378-3941558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):53, 150

               
               
               Conread position:356-540
               
               
               Cow position:chr22:37290532-37290351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:356-542
               
               
               Cow position:chr22:43789048-43789230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):57, 161

               
               
               Conread position:356-543
               
               
               Cow position:chr22:48271712-48271521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):20, 35

               
               
               Conread position:356-544
               
               
               Cow position:chr22:3065482-3065296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):57, 153

               
               
               Conread position:356-544
               
               
               Cow position:chr22:23582493-23582307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):55, 155

               
               
               Conread position:356-544
               
               
               Cow position:chr22:35755371-35755185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:155
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):56, 166

               
               
               Conread position:356-544
               
               
               Cow position:chr22:36555828-36555640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):57, 180

               
               
               Conread position:356-546
               
               
               Cow position:chr22:34931759-34931570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):62, 104

               
               
               Conread position:357-517
               
               
               Cow position:chr22:42234098-42234256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):34, 97

               
               
               Conread position:357-541
               
               
               Cow position:chr22:43280161-43279979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):52, 149

               
               
               Conread position:357-544
               
               
               Cow position:chr22:32951551-32951741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:156
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:358-514
               
               
               Cow position:chr22:6722247-6722090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:361-518
               
               
               Cow position:chr22:32359208-32359050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:361-544
               
               
               Cow position:chr22:15872117-15872298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):54, 150

               
               
               Conread position:362-544
               
               
               Cow position:chr22:33113460-33113642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):14, 160

               
               
               Conread position:363-544
               
               
               Cow position:chr22:39695418-39695600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):146, 40

               
               
               Conread position:375-511
               
               
               Cow position:chr22:19828851-19828710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:376-544
               
               
               Cow position:chr22:24905846-24906017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:377-517
               
               
               Cow position:chr22:8505012-8505153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:377-519
               
               
               Cow position:chr22:8480767-8480910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:378-542
               
               
               Cow position:chr22:6493215-6493380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):35, 6

               
               
               Conread position:383-537
               
               
               Cow position:chr22:26019352-26019197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):32, 145

               
               
               Conread position:392-518
               
               
               Cow position:chr22:556970-556845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):17, 76

               
               
               Conread position:397-548
               
               
               Cow position:chr22:14699752-14699600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:421-519
               
               
               Cow position:chr22:22159901-22159999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:85
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:353-511
               
               
               Cow position:chr23:25370581-25370423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):56, 27

               
               
               Conread position:353-514
               
               
               Cow position:chr23:19493160-19493323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:353-517
               
               
               Cow position:chr23:11078590-11078755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):34, 26

               
               
               Conread position:353-517
               
               
               Cow position:chr23:11343808-11343972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-518
               
               
               Cow position:chr23:40553811-40553646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):60, 153

               
               
               Conread position:353-528
               
               
               Cow position:chr23:20170894-20170721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):60, 98

               
               
               Conread position:353-538
               
               
               Cow position:chr23:1959438-1959621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-538
               
               
               Cow position:chr23:22143999-22143816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):56, 158

               
               
               Conread position:353-539
               
               
               Cow position:chr23:20152909-20152725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr23:2408901-2408719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):56, 98

               
               
               Conread position:353-540
               
               
               Cow position:chr23:2791462-2791277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):56, 152

               
               
               Conread position:353-540
               
               
               Cow position:chr23:4892007-4892192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):58, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr23:5624267-5624083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):56, 74

               
               
               Conread position:353-540
               
               
               Cow position:chr23:11377006-11376821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):55, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr23:11782097-11782282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr23:14959642-14959461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:353-540
               
               
               Cow position:chr23:15528898-15529083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr23:26828560-26828745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):56, 156

               
               
               Conread position:353-540
               
               
               Cow position:chr23:27402445-27402630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):56, 158

               
               
               Conread position:353-540
               
               
               Cow position:chr23:36027941-36027756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr23:37199199-37199014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr23:39389380-39389565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-544
               
               
               Cow position:chr23:1322085-1321896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):62, 156

               
               
               Conread position:353-544
               
               
               Cow position:chr23:6173709-6173524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:159
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):60, 158

               
               
               Conread position:353-544
               
               
               Cow position:chr23:7359767-7359956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):60, 159

               
               
               Conread position:353-544
               
               
               Cow position:chr23:17522395-17522577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:353-547
               
               
               Cow position:chr23:15180270-15180461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):152, 0

               
               
               Conread position:353-547
               
               
               Cow position:chr23:25412189-25411998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):43, 27

               
               
               Conread position:356-511
               
               
               Cow position:chr23:16057013-16057167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):25, 64

               
               
               Conread position:356-540
               
               
               Cow position:chr23:24098442-24098624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):53, 158

               
               
               Conread position:356-540
               
               
               Cow position:chr23:28306160-28306341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):53, 24

               
               
               Conread position:356-544
               
               
               Cow position:chr23:6223132-6223317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):131, 108

               
               
               Conread position:356-544
               
               
               Cow position:chr23:25553904-25554094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):47, 157

               
               
               Conread position:357-522
               
               
               Cow position:chr23:25670465-25670291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):14, 35

               
               
               Conread position:361-514
               
               
               Cow position:chr23:40372036-40371883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):48, 150

               
               
               Conread position:361-518
               
               
               Cow position:chr23:16611079-16610922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):48, 150

               
               
               Conread position:361-519
               
               
               Cow position:chr23:5882621-5882780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):44, 151

               
               
               Conread position:361-551
               
               
               Cow position:chr23:37152538-37152350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:370-544
               
               
               Cow position:chr23:1545080-1545244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):9, 30

               
               
               Conread position:372-514
               
               
               Cow position:chr23:23470055-23470196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:372-523
               
               
               Cow position:chr23:29143396-29143550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:384-544
               
               
               Cow position:chr23:10013676-10013835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):31, 127

               
               
               Conread position:386-544
               
               
               Cow position:chr23:30243832-30243987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):25, 125

               
               
               Conread position:387-517
               
               
               Cow position:chr23:26066261-26066389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:389-542
               
               
               Cow position:chr23:2721069-2721220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):20, 117

               
               
               Conread position:392-511
               
               
               Cow position:chr23:29271246-29271366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:93
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:393-512
               
               
               Cow position:chr23:25665455-25665337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:93
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:352-544
               
               
               Cow position:chr24:39482574-39482759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:353-508
               
               
               Cow position:chr24:28688815-28688971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:132
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:353-512
               
               
               Cow position:chr24:28497731-28497570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:353-514
               
               
               Cow position:chr24:17368518-17368358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):56, 19

               
               
               Conread position:353-517
               
               
               Cow position:chr24:16266853-16267021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:143
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:353-518
               
               
               Cow position:chr24:6412882-6413047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):56, 161

               
               
               Conread position:353-519
               
               
               Cow position:chr24:16908701-16908868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:353-521
               
               
               Cow position:chr24:25677115-25677284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):56, 113

               
               
               Conread position:353-538
               
               
               Cow position:chr24:20283808-20283625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr24:6035777-6035592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr24:11940165-11940350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):56, 161

               
               
               Conread position:353-540
               
               
               Cow position:chr24:16558876-16558696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:353-540
               
               
               Cow position:chr24:17544540-17544355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):56, 156

               
               
               Conread position:353-540
               
               
               Cow position:chr24:18223077-18222890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):56, 155

               
               
               Conread position:353-540
               
               
               Cow position:chr24:22975211-22975397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):56, 168

               
               
               Conread position:353-540
               
               
               Cow position:chr24:23052483-23052295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):56, 156

               
               
               Conread position:353-540
               
               
               Cow position:chr24:30870565-30870380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):59, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr24:40467009-40466824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-541
               
               
               Cow position:chr24:17161574-17161388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-544
               
               
               Cow position:chr24:5608416-5608224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):58, 161

               
               
               Conread position:353-544
               
               
               Cow position:chr24:16056460-16056274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):105, 27

               
               
               Conread position:353-544
               
               
               Cow position:chr24:41062858-41063050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):60, 169

               
               
               Conread position:353-547
               
               
               Cow position:chr24:29190687-29190879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):56, 152

               
               
               Conread position:356-519
               
               
               Cow position:chr24:45009595-45009754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:356-540
               
               
               Cow position:chr24:33937336-33937517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):53, 39

               
               
               Conread position:356-544
               
               
               Cow position:chr24:5862948-5862761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):53, 151

               
               
               Conread position:356-544
               
               
               Cow position:chr24:32361449-32361267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):53, 98

               
               
               Conread position:356-544
               
               
               Cow position:chr24:39258255-39258435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:356-555
               
               
               Cow position:chr24:32608718-32608914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):55, 158

               
               
               Conread position:357-504
               
               
               Cow position:chr24:45217022-45216874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:358-518
               
               
               Cow position:chr24:7404508-7404353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:358-544
               
               
               Cow position:chr24:17105470-17105284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):109, 156

               
               
               Conread position:359-519
               
               
               Cow position:chr24:12347984-12347823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:359-540
               
               
               Cow position:chr24:33053610-33053423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):50, 23

               
               
               Conread position:361-518
               
               
               Cow position:chr24:32849550-32849707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):48, 153

               
               
               Conread position:361-540
               
               
               Cow position:chr24:9549675-9549851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):48, 61

               
               
               Conread position:367-544
               
               
               Cow position:chr24:30765741-30765915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):44, 144

               
               
               Conread position:368-544
               
               
               Cow position:chr24:39956692-39956517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):41, 138

               
               
               Conread position:369-544
               
               
               Cow position:chr24:33575681-33575856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):14, 142

               
               
               Conread position:372-544
               
               
               Cow position:chr24:26847183-26847010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:377-522
               
               
               Cow position:chr24:40445096-40445240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:377-544
               
               
               Cow position:chr24:25110676-25110840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):32, 134

               
               
               Conread position:395-517
               
               
               Cow position:chr24:39122891-39123015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:408-502
               
               
               Cow position:chr24:39680972-39681065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:81
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:409-540
               
               
               Cow position:chr24:19677878-19678006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:347-542
               
               
               Cow position:chr25:25509986-25510177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):62, 10

               
               
               Conread position:350-517
               
               
               Cow position:chr25:16801538-16801705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):59, 156

               
               
               Conread position:353-504
               
               
               Cow position:chr25:13430011-13429859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):56, 70

               
               
               Conread position:353-511
               
               
               Cow position:chr25:4522710-4522551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:353-512
               
               
               Cow position:chr25:13787075-13787234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):56, 152

               
               
               Conread position:353-514
               
               
               Cow position:chr25:17995189-17995031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):56, 112

               
               
               Conread position:353-518
               
               
               Cow position:chr25:9413448-9413613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):60, 153

               
               
               Conread position:353-518
               
               
               Cow position:chr25:39386728-39386563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):56, 161

               
               
               Conread position:353-518
               
               
               Cow position:chr25:41121105-41121270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):56, 70

               
               
               Conread position:353-520
               
               
               Cow position:chr25:41356696-41356526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:353-538
               
               
               Cow position:chr25:12939106-12938923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):56, 161

               
               
               Conread position:353-540
               
               
               Cow position:chr25:18886380-18886198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):56, 98

               
               
               Conread position:353-540
               
               
               Cow position:chr25:22151206-22151391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):56, 156

               
               
               Conread position:353-540
               
               
               Cow position:chr25:24655073-24654888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):56, 71

               
               
               Conread position:353-540
               
               
               Cow position:chr25:28275567-28275382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):56, 152

               
               
               Conread position:353-540
               
               
               Cow position:chr25:28862973-28863158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr25:35755142-35754959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):56, 19

               
               
               Conread position:353-541
               
               
               Cow position:chr25:29802644-29802458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-544
               
               
               Cow position:chr25:393367-393550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):56, 70

               
               
               Conread position:353-544
               
               
               Cow position:chr25:2594863-2595056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):56, 118

               
               
               Conread position:354-519
               
               
               Cow position:chr25:15367838-15368004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):22, 158

               
               
               Conread position:354-544
               
               
               Cow position:chr25:24637038-24636854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:355-518
               
               
               Cow position:chr25:17562143-17562305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):155, 0

               
               
               Conread position:355-544
               
               
               Cow position:chr25:2516105-2516296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:158
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):155, 48

               
               
               Conread position:356-544
               
               
               Cow position:chr25:7800116-7800306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):17, 160

               
               
               Conread position:356-544
               
               
               Cow position:chr25:11043723-11043905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):53, 97

               
               
               Conread position:356-546
               
               
               Cow position:chr25:34013650-34013462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):53, 150

               
               
               Conread position:356-546
               
               
               Cow position:chr25:34767795-34767972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):176, 40

               
               
               Conread position:356-550
               
               
               Cow position:chr25:34503118-34502926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):53, 150

               
               
               Conread position:358-515
               
               
               Cow position:chr25:24228232-24228073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):55, 103

               
               
               Conread position:359-559
               
               
               Cow position:chr25:41098091-41097893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):50, 152

               
               
               Conread position:360-544
               
               
               Cow position:chr25:18129315-18129490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:361-518
               
               
               Cow position:chr25:16430909-16430752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):55, 150

               
               
               Conread position:361-519
               
               
               Cow position:chr25:18424404-18424563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):48, 108

               
               
               Conread position:361-542
               
               
               Cow position:chr25:30526266-30526086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):19, 152

               
               
               Conread position:361-544
               
               
               Cow position:chr25:14393984-14393803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):153, 0

               
               
               Conread position:368-520
               
               
               Cow position:chr25:20495660-20495813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:368-540
               
               
               Cow position:chr25:14954921-14954751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):41, 138

               
               
               Conread position:368-544
               
               
               Cow position:chr25:20613651-20613823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):45, 142

               
               
               Conread position:379-533
               
               
               Cow position:chr25:20006276-20006429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):7, 136

               
               
               Conread position:383-540
               
               
               Cow position:chr25:29216998-29216841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):30, 139

               
               
               Conread position:385-549
               
               
               Cow position:chr25:24459588-24459428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):28, 141

               
               
               Conread position:402-511
               
               
               Cow position:chr25:3172266-3172158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:88
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:353-517
               
               
               Cow position:chr26:26238356-26238521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:353-538
               
               
               Cow position:chr26:14897445-14897628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-539
               
               
               Cow position:chr26:35423854-35424038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr26:17327519-17327710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):33, 159

               
               
               Conread position:353-540
               
               
               Cow position:chr26:17429118-17428933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr26:22831681-22831497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):56, 91

               
               
               Conread position:353-540
               
               
               Cow position:chr26:30725560-30725367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:353-541
               
               
               Cow position:chr26:3230825-3231009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:353-541
               
               
               Cow position:chr26:17169187-17169373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):56, 156

               
               
               Conread position:353-544
               
               
               Cow position:chr26:9835828-9836018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:154
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):56, 174

               
               
               Conread position:353-544
               
               
               Cow position:chr26:15558844-15559031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):28, 88

               
               
               Conread position:353-545
               
               
               Cow position:chr26:6843863-6843674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:355-508
               
               
               Cow position:chr26:18933983-18933830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):59, 29

               
               
               Conread position:355-540
               
               
               Cow position:chr26:21538752-21538935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):54, 151

               
               
               Conread position:356-511
               
               
               Cow position:chr26:8653764-8653610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):39, 99

               
               
               Conread position:356-541
               
               
               Cow position:chr26:7459604-7459419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):15, 155

               
               
               Conread position:356-542
               
               
               Cow position:chr26:1885373-1885561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):147, 13

               
               
               Conread position:356-544
               
               
               Cow position:chr26:4324354-4324175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:356-551
               
               
               Cow position:chr26:30585997-30585806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):53, 95

               
               
               Conread position:357-540
               
               
               Cow position:chr26:23591056-23591237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):52, 152

               
               
               Conread position:357-544
               
               
               Cow position:chr26:8308403-8308207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):40, 13

               
               
               Conread position:360-523
               
               
               Cow position:chr26:6836985-6837149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:360-545
               
               
               Cow position:chr26:3705930-3706112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):49, 154

               
               
               Conread position:361-521
               
               
               Cow position:chr26:11266072-11266233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:361-557
               
               
               Cow position:chr26:887487-887677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):48, 19

               
               
               Conread position:364-518
               
               
               Cow position:chr26:3184975-3185131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:364-544
               
               
               Cow position:chr26:10699138-10698964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:367-511
               
               
               Cow position:chr26:20185410-20185555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:372-517
               
               
               Cow position:chr26:2604549-2604404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):37, 139

               
               
               Conread position:375-544
               
               
               Cow position:chr26:12126190-12126027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):34, 53

               
               
               Conread position:376-520
               
               
               Cow position:chr26:13556830-13556688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):33, 75

               
               
               Conread position:376-544
               
               
               Cow position:chr26:799164-798997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):37, 146

               
               
               Conread position:381-544
               
               
               Cow position:chr26:9867959-9867798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):30, 67

               
               
               Conread position:387-544
               
               
               Cow position:chr26:2770756-2770601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):21, 117

               
               
               Conread position:388-504
               
               
               Cow position:chr26:2012935-2012816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:95
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:344-540
               
               
               Cow position:chr27:24295957-24295763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):65, 162

               
               
               Conread position:353-518
               
               
               Cow position:chr27:4982684-4982849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-518
               
               
               Cow position:chr27:8972756-8972921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):56, 156

               
               
               Conread position:353-518
               
               
               Cow position:chr27:12239380-12239544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):56, 76

               
               
               Conread position:353-518
               
               
               Cow position:chr27:13901436-13901601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-519
               
               
               Cow position:chr27:2936138-2936300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):56, 98

               
               
               Conread position:353-519
               
               
               Cow position:chr27:27291705-27291871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-519
               
               
               Cow position:chr27:30036181-30036350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:353-540
               
               
               Cow position:chr27:3990488-3990304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr27:8201247-8201432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):57, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr27:9332979-9333164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):56, 156

               
               
               Conread position:353-540
               
               
               Cow position:chr27:15033579-15033394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr27:28984081-28984262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):59, 84

               
               
               Conread position:353-540
               
               
               Cow position:chr27:29811615-29811801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):30, 14

               
               
               Conread position:353-542
               
               
               Cow position:chr27:2557681-2557495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):56, 70

               
               
               Conread position:353-544
               
               
               Cow position:chr27:4331428-4331238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):30, 102

               
               
               Conread position:353-544
               
               
               Cow position:chr27:15405933-15406123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:157
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):56, 101

               
               
               Conread position:353-544
               
               
               Cow position:chr27:19388885-19388689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):54, 126

               
               
               Conread position:353-547
               
               
               Cow position:chr27:9089952-9090146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):56, 19

               
               
               Conread position:356-517
               
               
               Cow position:chr27:4818729-4818889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):56, 34

               
               
               Conread position:356-519
               
               
               Cow position:chr27:5914248-5914406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:356-533
               
               
               Cow position:chr27:30306954-30306776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:357-544
               
               
               Cow position:chr27:27054180-27053990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):56, 168

               
               
               Conread position:358-544
               
               
               Cow position:chr27:1501831-1502011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):161, 0

               
               
               Conread position:359-519
               
               
               Cow position:chr27:21392329-21392489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):50, 25

               
               
               Conread position:359-544
               
               
               Cow position:chr27:11489941-11490122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):151, 0

               
               
               Conread position:360-533
               
               
               Cow position:chr27:4834464-4834634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):49, 12

               
               
               Conread position:361-551
               
               
               Cow position:chr27:9262957-9262771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):48, 150

               
               
               Conread position:362-520
               
               
               Cow position:chr27:12262196-12262037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:372-544
               
               
               Cow position:chr27:2849101-2848934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):41, 86

               
               
               Conread position:376-544
               
               
               Cow position:chr27:27193011-27192848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):35, 136

               
               
               Conread position:392-544
               
               
               Cow position:chr27:23454331-23454476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):18, 28

               
               
               Conread position:393-540
               
               
               Cow position:chr27:9989527-9989382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):16, 113

               
               
               Conread position:347-540
               
               
               Cow position:chr28:6959583-6959772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):62, 9

               
               
               Conread position:352-523
               
               
               Cow position:chr28:8717595-8717423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):57, 7

               
               
               Conread position:352-540
               
               
               Cow position:chr28:5748348-5748163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):57, 7

               
               
               Conread position:353-503
               
               
               Cow position:chr28:18516788-18516636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:353-507
               
               
               Cow position:chr28:23675171-23675326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:353-514
               
               
               Cow position:chr28:19193877-19194040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:353-517
               
               
               Cow position:chr28:10473316-10473480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-517
               
               
               Cow position:chr28:24997556-24997385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:353-517
               
               
               Cow position:chr28:32786069-32785912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):56, 98

               
               
               Conread position:353-518
               
               
               Cow position:chr28:3188659-3188494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):56, 152

               
               
               Conread position:353-518
               
               
               Cow position:chr28:12081569-12081406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):56, 72

               
               
               Conread position:353-518
               
               
               Cow position:chr28:12156037-12156202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-519
               
               
               Cow position:chr28:10578738-10578571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:353-519
               
               
               Cow position:chr28:29198835-29199002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:353-540
               
               
               Cow position:chr28:5211479-5211664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):56, 156

               
               
               Conread position:353-540
               
               
               Cow position:chr28:7005385-7005571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):56, 154

               
               
               Conread position:353-540
               
               
               Cow position:chr28:17391791-17391976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):56, 161

               
               
               Conread position:353-540
               
               
               Cow position:chr28:17663591-17663406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):56, 161

               
               
               Conread position:353-540
               
               
               Cow position:chr28:22254842-22254659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):60, 98

               
               
               Conread position:353-540
               
               
               Cow position:chr28:26419643-26419458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):57, 152

               
               
               Conread position:353-540
               
               
               Cow position:chr28:29823543-29823728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):61, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr28:30098234-30098419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr28:34597602-34597788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):56, 154

               
               
               Conread position:353-541
               
               
               Cow position:chr28:9182227-9182413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-544
               
               
               Cow position:chr28:958218-958405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):84, 55

               
               
               Conread position:353-544
               
               
               Cow position:chr28:11787597-11787412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):60, 96

               
               
               Conread position:353-544
               
               
               Cow position:chr28:12429563-12429753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):60, 113

               
               
               Conread position:353-544
               
               
               Cow position:chr28:13606787-13606978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:155
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):53, 18

               
               
               Conread position:353-544
               
               
               Cow position:chr28:17686283-17686089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):44, 190

               
               
               Conread position:353-544
               
               
               Cow position:chr28:30328568-30328383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:158
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:355-507
               
               
               Cow position:chr28:9420239-9420087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):54, 37

               
               
               Conread position:355-551
               
               
               Cow position:chr28:28723583-28723776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):54, 151

               
               
               Conread position:356-517
               
               
               Cow position:chr28:17131775-17131614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):59, 150

               
               
               Conread position:356-518
               
               
               Cow position:chr28:24302004-24301841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:356-519
               
               
               Cow position:chr28:1024972-1024808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:356-544
               
               
               Cow position:chr28:615347-615528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):53, 11

               
               
               Conread position:356-544
               
               
               Cow position:chr28:24644821-24645007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:152
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):53, 153

               
               
               Conread position:356-546
               
               
               Cow position:chr28:5940847-5941035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):53, 150

               
               
               Conread position:356-547
               
               
               Cow position:chr28:30966564-30966755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):53, 61

               
               
               Conread position:358-540
               
               
               Cow position:chr28:29036289-29036109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):51, 148

               
               
               Conread position:358-544
               
               
               Cow position:chr28:20964512-20964328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):51, 22

               
               
               Conread position:359-544
               
               
               Cow position:chr28:7981595-7981416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:359-544
               
               
               Cow position:chr28:17602677-17602484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:361-518
               
               
               Cow position:chr28:21855837-21855678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:361-519
               
               
               Cow position:chr28:29473357-29473516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:361-523
               
               
               Cow position:chr28:18140348-18140184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:362-517
               
               
               Cow position:chr28:4457700-4457852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):34, 51

               
               
               Conread position:364-568
               
               
               Cow position:chr28:23467277-23467474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):16, 147

               
               
               Conread position:368-503
               
               
               Cow position:chr28:21767931-21767795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:369-508
               
               
               Cow position:chr28:30369366-30369505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):46, 64

               
               
               Conread position:381-544
               
               
               Cow position:chr28:10643157-10642997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):28, 130

               
               
               Conread position:382-518
               
               
               Cow position:chr28:23773971-23773835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):27, 127

               
               
               Conread position:386-544
               
               
               Cow position:chr28:13889604-13889448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):23, 128

               
               
               Conread position:392-535
               
               
               Cow position:chr28:1550239-1550378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):23, 74

               
               
               Conread position:392-540
               
               
               Cow position:chr28:24603323-24603469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):17, 122

               
               
               Conread position:392-543
               
               
               Cow position:chr28:7373354-7373202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):116, 16

               
               
               Conread position:393-541
               
               
               Cow position:chr28:10562802-10562948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):16, 113

               
               
               Conread position:396-540
               
               
               Cow position:chr28:30532593-30532452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):13, 110

               
               
               Conread position:347-540
               
               
               Cow position:chr29:14208242-14208054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):62, 9

               
               
               Conread position:350-539
               
               
               Cow position:chr29:35002348-35002161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):59, 156

               
               
               Conread position:350-540
               
               
               Cow position:chr29:35076450-35076638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):59, 156

               
               
               Conread position:351-540
               
               
               Cow position:chr29:38350034-38349848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):162, 0

               
               
               Conread position:353-507
               
               
               Cow position:chr29:39076390-39076234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:353-511
               
               
               Cow position:chr29:2298990-2298831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:353-513
               
               
               Cow position:chr29:13099501-13099663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:353-516
               
               
               Cow position:chr29:23980039-23980205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:353-517
               
               
               Cow position:chr29:1605408-1605243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:353-518
               
               
               Cow position:chr29:19515016-19514845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):56, 159

               
               
               Conread position:353-518
               
               
               Cow position:chr29:24577982-24578146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:139
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):56, 76

               
               
               Conread position:353-518
               
               
               Cow position:chr29:34794534-34794365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):45, 157

               
               
               Conread position:353-520
               
               
               Cow position:chr29:40498547-40498377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:353-540
               
               
               Cow position:chr29:2694030-2694214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr29:2838007-2837822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):57, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr29:5240725-5240909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):56, 69

               
               
               Conread position:353-540
               
               
               Cow position:chr29:6262680-6262495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr29:6934812-6934997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr29:7427813-7427628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr29:7811868-7811682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):65, 154

               
               
               Conread position:353-540
               
               
               Cow position:chr29:10820386-10820201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr29:19657210-19657395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr29:20254493-20254678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr29:22279701-22279886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):56, 158

               
               
               Conread position:353-540
               
               
               Cow position:chr29:35273710-35273525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):57, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr29:45462562-45462745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):56, 44

               
               
               Conread position:353-542
               
               
               Cow position:chr29:735445-735259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):56, 19

               
               
               Conread position:353-542
               
               
               Cow position:chr29:32175602-32175788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):57, 158

               
               
               Conread position:353-543
               
               
               Cow position:chr29:4519063-4519254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:152
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):157, 0

               
               
               Conread position:353-544
               
               
               Cow position:chr29:4481061-4480876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:158
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):47, 75

               
               
               Conread position:353-544
               
               
               Cow position:chr29:12797911-12798102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):57, 159

               
               
               Conread position:353-544
               
               
               Cow position:chr29:19619940-19619751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):59, 153

               
               
               Conread position:353-544
               
               
               Cow position:chr29:32962639-32962825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):56, 70

               
               
               Conread position:355-519
               
               
               Cow position:chr29:40116644-40116807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):54, 9

               
               
               Conread position:355-542
               
               
               Cow position:chr29:19397991-19398175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):54, 155

               
               
               Conread position:355-544
               
               
               Cow position:chr29:24669066-24669252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):50, 17

               
               
               Conread position:356-540
               
               
               Cow position:chr29:5961335-5961517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):53, 153

               
               
               Conread position:356-544
               
               
               Cow position:chr29:7604735-7604918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):160, 0

               
               
               Conread position:356-544
               
               
               Cow position:chr29:10297530-10297347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:159
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:356-544
               
               
               Cow position:chr29:11786334-11786522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):53, 160

               
               
               Conread position:356-544
               
               
               Cow position:chr29:26262955-26263143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:152
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):53, 110

               
               
               Conread position:358-519
               
               
               Cow position:chr29:11136773-11136610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:358-540
               
               
               Cow position:chr29:25929174-25928994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):51, 148

               
               
               Conread position:358-544
               
               
               Cow position:chr29:649367-649555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:361-502
               
               
               Cow position:chr29:133309-133451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:361-540
               
               
               Cow position:chr29:32543475-32543651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):48, 59

               
               
               Conread position:362-538
               
               
               Cow position:chr29:14854236-14854058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):47, 104

               
               
               Conread position:367-533
               
               
               Cow position:chr29:29701866-29701698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:370-518
               
               
               Cow position:chr29:16194957-16195107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:372-511
               
               
               Cow position:chr29:36323376-36323516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:103
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:372-544
               
               
               Cow position:chr29:7289890-7290063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):35, 151

               
               
               Conread position:375-507
               
               
               Cow position:chr29:13590592-13590459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:382-544
               
               
               Cow position:chr29:23984804-23984645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):31, 140

               
               
               Conread position:384-540
               
               
               Cow position:chr29:4200753-4200903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):29, 67

               
               
               Conread position:387-517
               
               
               Cow position:chr29:290472-290342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):23, 127

               
               
               Conread position:389-544
               
               
               Cow position:chr29:22935412-22935565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):20, 122

               
               
               Conread position:392-517
               
               
               Cow position:chr29:18360917-18360791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:316-544
               
               
               Cow position:chr3:75479068-75479292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):102, 60

               
               
               Conread position:347-504
               
               
               Cow position:chr3:13291344-13291499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):65, 9

               
               
               Conread position:350-518
               
               
               Cow position:chr3:26532767-26532598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):63, 162

               
               
               Conread position:350-540
               
               
               Cow position:chr3:23287097-23286909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):59, 161

               
               
               Conread position:350-544
               
               
               Cow position:chr3:32220951-32221142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):59, 92

               
               
               Conread position:352-514
               
               
               Cow position:chr3:27866905-27867066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):58, 7

               
               
               Conread position:353-503
               
               
               Cow position:chr3:10243902-10244053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:353-508
               
               
               Cow position:chr3:59607535-59607690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:353-511
               
               
               Cow position:chr3:8391601-8391757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:353-514
               
               
               Cow position:chr3:54653932-54653770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:353-515
               
               
               Cow position:chr3:31748921-31749083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):26, 19

               
               
               Conread position:353-517
               
               
               Cow position:chr3:6864901-6865065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-517
               
               
               Cow position:chr3:23010598-23010762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):56, 156

               
               
               Conread position:353-517
               
               
               Cow position:chr3:24442860-24442696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-517
               
               
               Cow position:chr3:25753496-25753660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:139
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:353-517
               
               
               Cow position:chr3:33125012-33124848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-517
               
               
               Cow position:chr3:43190027-43189866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):56, 87

               
               
               Conread position:353-517
               
               
               Cow position:chr3:58766386-58766551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:353-518
               
               
               Cow position:chr3:7677734-7677898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:137
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:353-518
               
               
               Cow position:chr3:11411806-11411641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):56, 95

               
               
               Conread position:353-518
               
               
               Cow position:chr3:17864671-17864837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):28, 157

               
               
               Conread position:353-518
               
               
               Cow position:chr3:26993367-26993532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:141
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):60, 156

               
               
               Conread position:353-518
               
               
               Cow position:chr3:56645088-56644923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):56, 156

               
               
               Conread position:353-518
               
               
               Cow position:chr3:57835409-57835243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):60, 131

               
               
               Conread position:353-519
               
               
               Cow position:chr3:11384555-11384721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):56, 156

               
               
               Conread position:353-519
               
               
               Cow position:chr3:58950704-58950869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:353-523
               
               
               Cow position:chr3:12673134-12672963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):60, 68

               
               
               Conread position:353-537
               
               
               Cow position:chr3:15988182-15988364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):56, 158

               
               
               Conread position:353-539
               
               
               Cow position:chr3:5951381-5951197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):59, 161

               
               
               Conread position:353-540
               
               
               Cow position:chr3:5887128-5887311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):56, 70

               
               
               Conread position:353-540
               
               
               Cow position:chr3:7476678-7476492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):56, 154

               
               
               Conread position:353-540
               
               
               Cow position:chr3:11784606-11784787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:353-540
               
               
               Cow position:chr3:18814748-18814933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):56, 70

               
               
               Conread position:353-540
               
               
               Cow position:chr3:19216142-19216328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):53, 159

               
               
               Conread position:353-540
               
               
               Cow position:chr3:19753492-19753307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):56, 161

               
               
               Conread position:353-540
               
               
               Cow position:chr3:21100046-21100231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr3:23204435-23204249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):56, 154

               
               
               Conread position:353-540
               
               
               Cow position:chr3:36874818-36874633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr3:38869809-38869993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):58, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr3:40826639-40826824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):58, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr3:46506011-46506196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):56, 161

               
               
               Conread position:353-540
               
               
               Cow position:chr3:48603495-48603689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):56, 162

               
               
               Conread position:353-540
               
               
               Cow position:chr3:49416604-49416419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr3:49541965-49541780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):56, 152

               
               
               Conread position:353-540
               
               
               Cow position:chr3:56148538-56148723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr3:59864722-59864907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr3:72633316-72633500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):152, 0

               
               
               Conread position:353-540
               
               
               Cow position:chr3:75038599-75038414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-542
               
               
               Cow position:chr3:29130337-29130521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):56, 28

               
               
               Conread position:353-542
               
               
               Cow position:chr3:37983123-37982936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:152
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):56, 156

               
               
               Conread position:353-542
               
               
               Cow position:chr3:42500313-42500491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:353-543
               
               
               Cow position:chr3:45977742-45977930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-543
               
               
               Cow position:chr3:70322433-70322244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):39, 157

               
               
               Conread position:353-544
               
               
               Cow position:chr3:17937775-17937584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):56, 158

               
               
               Conread position:353-544
               
               
               Cow position:chr3:18460452-18460254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):50, 33

               
               
               Conread position:353-544
               
               
               Cow position:chr3:24585988-24585797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:154
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):60, 109

               
               
               Conread position:353-544
               
               
               Cow position:chr3:31934095-31933906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):60, 158

               
               
               Conread position:353-544
               
               
               Cow position:chr3:40101614-40101428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):56, 19

               
               
               Conread position:353-544
               
               
               Cow position:chr3:52651712-52651522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:155
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):60, 157

               
               
               Conread position:353-544
               
               
               Cow position:chr3:54863377-54863191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):56, 42

               
               
               Conread position:353-544
               
               
               Cow position:chr3:59118536-59118347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):56, 157

               
               
               Conread position:353-544
               
               
               Cow position:chr3:64293768-64293952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):61, 27

               
               
               Conread position:353-544
               
               
               Cow position:chr3:76136561-76136753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):56, 161

               
               
               Conread position:353-545
               
               
               Cow position:chr3:61677778-61677968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:157
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):100, 95

               
               
               Conread position:353-547
               
               
               Cow position:chr3:47272636-47272444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-551
               
               
               Cow position:chr3:64282073-64281887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:354-544
               
               
               Cow position:chr3:6897070-6897260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:155
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):64, 160

               
               
               Conread position:355-522
               
               
               Cow position:chr3:64277980-64278147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):157, 12

               
               
               Conread position:355-540
               
               
               Cow position:chr3:16332666-16332852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):162, 12

               
               
               Conread position:355-544
               
               
               Cow position:chr3:34393042-34392853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):54, 129

               
               
               Conread position:356-504
               
               
               Cow position:chr3:33269472-33269618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):53, 84

               
               
               Conread position:356-515
               
               
               Cow position:chr3:33326632-33326795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):57, 43

               
               
               Conread position:356-516
               
               
               Cow position:chr3:15656069-15655909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):53, 24

               
               
               Conread position:356-519
               
               
               Cow position:chr3:46349471-46349634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):53, 41

               
               
               Conread position:356-528
               
               
               Cow position:chr3:37451346-37451519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):31, 171

               
               
               Conread position:356-540
               
               
               Cow position:chr3:35619798-35619980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):53, 150

               
               
               Conread position:356-540
               
               
               Cow position:chr3:69930590-69930409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):53, 36

               
               
               Conread position:356-540
               
               
               Cow position:chr3:73451068-73450886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):53, 150

               
               
               Conread position:356-540
               
               
               Cow position:chr3:78024190-78024012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):53, 97

               
               
               Conread position:356-544
               
               
               Cow position:chr3:16657629-16657441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):57, 180

               
               
               Conread position:356-544
               
               
               Cow position:chr3:39970822-39970638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:159
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 25

               
               
               Conread position:356-544
               
               
               Cow position:chr3:67745533-67745340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):57, 162

               
               
               Conread position:358-518
               
               
               Cow position:chr3:23944212-23944372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):55, 153

               
               
               Conread position:358-544
               
               
               Cow position:chr3:22352861-22353045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):51, 156

               
               
               Conread position:358-544
               
               
               Cow position:chr3:49133152-49132971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):51, 37

               
               
               Conread position:359-518
               
               
               Cow position:chr3:63276274-63276118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:360-539
               
               
               Cow position:chr3:66623436-66623613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):49, 63

               
               
               Conread position:361-518
               
               
               Cow position:chr3:83911817-83911975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:361-519
               
               
               Cow position:chr3:55454812-55454653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):48, 73

               
               
               Conread position:361-532
               
               
               Cow position:chr3:54347154-54346987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:361-538
               
               
               Cow position:chr3:14748581-14748406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):159, 0

               
               
               Conread position:361-542
               
               
               Cow position:chr3:16114654-16114835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):20, 153

               
               
               Conread position:361-544
               
               
               Cow position:chr3:19824816-19824634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):170, 149

               
               
               Conread position:361-559
               
               
               Cow position:chr3:51490545-51490745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):33, 83

               
               
               Conread position:362-542
               
               
               Cow position:chr3:16869154-16868976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):53, 149

               
               
               Conread position:363-544
               
               
               Cow position:chr3:65581942-65581761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):52, 149

               
               
               Conread position:364-511
               
               
               Cow position:chr3:80564054-80564202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:367-544
               
               
               Cow position:chr3:56697094-56697269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):42, 139

               
               
               Conread position:371-544
               
               
               Cow position:chr3:57481484-57481314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:372-541
               
               
               Cow position:chr3:14279941-14280105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):37, 134

               
               
               Conread position:374-512
               
               
               Cow position:chr3:21303324-21303181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:375-519
               
               
               Cow position:chr3:36403377-36403522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:375-547
               
               
               Cow position:chr3:13276013-13275843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):34, 134

               
               
               Conread position:383-511
               
               
               Cow position:chr3:523481-523611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:385-544
               
               
               Cow position:chr3:18246308-18246152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):24, 124

               
               
               Conread position:388-540
               
               
               Cow position:chr3:5989286-5989136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):21, 121

               
               
               Conread position:393-547
               
               
               Cow position:chr3:28675098-28675251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:399-544
               
               
               Cow position:chr3:70890735-70890878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):134, 114

               
               
               Conread position:347-540
               
               
               Cow position:chr4:44733663-44733852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):62, 9

               
               
               Conread position:351-517
               
               
               Cow position:chr4:65416134-65415968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):58, 44

               
               
               Conread position:352-514
               
               
               Cow position:chr4:64039263-64039418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):158, 56

               
               
               Conread position:352-544
               
               
               Cow position:chr4:2140105-2140297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:157
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):57, 7

               
               
               Conread position:352-544
               
               
               Cow position:chr4:67407609-67407793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:353-504
               
               
               Cow position:chr4:22316777-22316924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:353-509
               
               
               Cow position:chr4:48153262-48153104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:353-517
               
               
               Cow position:chr4:1061818-1061656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:353-517
               
               
               Cow position:chr4:2191246-2191082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):60, 153

               
               
               Conread position:353-517
               
               
               Cow position:chr4:61400304-61400138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:353-518
               
               
               Cow position:chr4:61242327-61242492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-519
               
               
               Cow position:chr4:20091151-20091317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):56, 19

               
               
               Conread position:353-519
               
               
               Cow position:chr4:21364117-21364283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):53, 117

               
               
               Conread position:353-528
               
               
               Cow position:chr4:3069957-3070135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:353-539
               
               
               Cow position:chr4:43316601-43316417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr4:358928-359115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):54, 155

               
               
               Conread position:353-540
               
               
               Cow position:chr4:3961848-3961663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):56, 162

               
               
               Conread position:353-540
               
               
               Cow position:chr4:4379421-4379606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):56, 161

               
               
               Conread position:353-540
               
               
               Cow position:chr4:10884688-10884871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):56, 19

               
               
               Conread position:353-540
               
               
               Cow position:chr4:17877005-17877191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):56, 154

               
               
               Conread position:353-540
               
               
               Cow position:chr4:19957073-19957260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):43, 155

               
               
               Conread position:353-540
               
               
               Cow position:chr4:23304293-23304108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr4:26874860-26874675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):56, 73

               
               
               Conread position:353-540
               
               
               Cow position:chr4:27177874-27178060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):56, 162

               
               
               Conread position:353-540
               
               
               Cow position:chr4:33069791-33069607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):152, 0

               
               
               Conread position:353-540
               
               
               Cow position:chr4:34712865-34713049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):56, 98

               
               
               Conread position:353-540
               
               
               Cow position:chr4:46711558-46711371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):54, 155

               
               
               Conread position:353-540
               
               
               Cow position:chr4:48029906-48030091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr4:57987793-57987976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):57, 44

               
               
               Conread position:353-542
               
               
               Cow position:chr4:66174273-66174086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:151
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):56, 158

               
               
               Conread position:353-544
               
               
               Cow position:chr4:7806216-7806408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:157
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:353-544
               
               
               Cow position:chr4:10993233-10993045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):34, 158

               
               
               Conread position:353-544
               
               
               Cow position:chr4:27539711-27539905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:153
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):161, 0

               
               
               Conread position:353-544
               
               
               Cow position:chr4:34700504-34700319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:156
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:353-544
               
               
               Cow position:chr4:35868242-35868434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):56, 101

               
               
               Conread position:353-544
               
               
               Cow position:chr4:36754833-36755022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:154
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):60, 84

               
               
               Conread position:353-544
               
               
               Cow position:chr4:39421643-39421832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-544
               
               
               Cow position:chr4:61065724-61065905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:353-546
               
               
               Cow position:chr4:18813162-18812971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):56, 156

               
               
               Conread position:353-547
               
               
               Cow position:chr4:16832502-16832311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):56, 131

               
               
               Conread position:353-547
               
               
               Cow position:chr4:61449561-61449756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):56, 174

               
               
               Conread position:354-511
               
               
               Cow position:chr4:33181237-33181079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:355-504
               
               
               Cow position:chr4:25578649-25578794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):21, 104

               
               
               Conread position:355-521
               
               
               Cow position:chr4:65918730-65918895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:140
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):54, 104

               
               
               Conread position:355-539
               
               
               Cow position:chr4:33496609-33496791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):54, 151

               
               
               Conread position:355-540
               
               
               Cow position:chr4:43884143-43884326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):54, 151

               
               
               Conread position:355-544
               
               
               Cow position:chr4:47269217-47269404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):54, 151

               
               
               Conread position:356-502
               
               
               Cow position:chr4:3354891-3354744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:356-517
               
               
               Cow position:chr4:22014369-22014209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:356-518
               
               
               Cow position:chr4:10135151-10134992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):53, 86

               
               
               Conread position:356-519
               
               
               Cow position:chr4:52086207-52086372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):24, 16

               
               
               Conread position:356-528
               
               
               Cow position:chr4:16606124-16605951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:142
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:356-532
               
               
               Cow position:chr4:54502239-54502065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:147
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:356-540
               
               
               Cow position:chr4:3449853-3450035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):53, 155

               
               
               Conread position:356-540
               
               
               Cow position:chr4:16641869-16642051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):55, 150

               
               
               Conread position:356-540
               
               
               Cow position:chr4:36026220-36026038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):53, 150

               
               
               Conread position:356-544
               
               
               Cow position:chr4:33399422-33399233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):53, 156

               
               
               Conread position:356-544
               
               
               Cow position:chr4:65816608-65816427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):53, 98

               
               
               Conread position:356-544
               
               
               Cow position:chr4:68880567-68880760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:357-518
               
               
               Cow position:chr4:27288055-27287894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):52, 149

               
               
               Conread position:358-517
               
               
               Cow position:chr4:1239377-1239219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):51, 40

               
               
               Conread position:358-547
               
               
               Cow position:chr4:11108033-11107846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):42, 116

               
               
               Conread position:360-517
               
               
               Cow position:chr4:19744028-19744186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:360-544
               
               
               Cow position:chr4:1462349-1462171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):59, 79

               
               
               Conread position:361-508
               
               
               Cow position:chr4:9169037-9168891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:361-508
               
               
               Cow position:chr4:42639241-42639092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:361-511
               
               
               Cow position:chr4:39645808-39645962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):48, 83

               
               
               Conread position:361-518
               
               
               Cow position:chr4:20658328-20658174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:361-523
               
               
               Cow position:chr4:10614139-10613974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):51, 118

               
               
               Conread position:361-536
               
               
               Cow position:chr4:20586300-20586128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):53, 11

               
               
               Conread position:361-544
               
               
               Cow position:chr4:61272533-61272354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):48, 25

               
               
               Conread position:363-519
               
               
               Cow position:chr4:21056296-21056452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):46, 23

               
               
               Conread position:367-541
               
               
               Cow position:chr4:53316975-53316803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):42, 139

               
               
               Conread position:368-544
               
               
               Cow position:chr4:58688833-58688661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:369-544
               
               
               Cow position:chr4:10872280-10872104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:369-544
               
               
               Cow position:chr4:18099874-18099710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:372-540
               
               
               Cow position:chr4:67652365-67652199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):38, 134

               
               
               Conread position:373-511
               
               
               Cow position:chr4:51122107-51122245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):10, 23

               
               
               Conread position:379-517
               
               
               Cow position:chr4:2122247-2122109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):38, 59

               
               
               Conread position:382-519
               
               
               Cow position:chr4:20606815-20606953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):31, 17

               
               
               Conread position:384-519
               
               
               Cow position:chr4:50977834-50977972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:384-540
               
               
               Cow position:chr4:68362067-68362222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):24, 97

               
               
               Conread position:385-519
               
               
               Cow position:chr4:66548969-66548833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):19, 7

               
               
               Conread position:387-540
               
               
               Cow position:chr4:43896415-43896264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):22, 119

               
               
               Conread position:393-544
               
               
               Cow position:chr4:19006582-19006729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):18, 23

               
               
               Conread position:395-517
               
               
               Cow position:chr4:37703406-37703529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:408-519
               
               
               Cow position:chr4:62569788-62569899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:90
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:408-544
               
               
               Cow position:chr4:21364352-21364483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:410-544
               
               
               Cow position:chr4:21258768-21258904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:352-540
               
               
               Cow position:chr5:29968756-29968941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):57, 7

               
               
               Conread position:352-541
               
               
               Cow position:chr5:7042390-7042575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:352-542
               
               
               Cow position:chr5:49565717-49565899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:353-512
               
               
               Cow position:chr5:72046515-72046355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):60, 44

               
               
               Conread position:353-514
               
               
               Cow position:chr5:25496261-25496099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:353-517
               
               
               Cow position:chr5:2917610-2917773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):56, 69

               
               
               Conread position:353-517
               
               
               Cow position:chr5:8178282-8178446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-518
               
               
               Cow position:chr5:411571-411406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-518
               
               
               Cow position:chr5:6671021-6670864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):23, 56

               
               
               Conread position:353-518
               
               
               Cow position:chr5:14313418-14313583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):56, 158

               
               
               Conread position:353-518
               
               
               Cow position:chr5:44709224-44709059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):60, 161

               
               
               Conread position:353-518
               
               
               Cow position:chr5:69519748-69519914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:140
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:353-518
               
               
               Cow position:chr5:76098882-76098717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-519
               
               
               Cow position:chr5:32697643-32697477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):89, 23

               
               
               Conread position:353-519
               
               
               Cow position:chr5:32964912-32964745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:353-520
               
               
               Cow position:chr5:49132342-49132507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):56, 42

               
               
               Conread position:353-523
               
               
               Cow position:chr5:54088864-54089031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:353-538
               
               
               Cow position:chr5:10921993-10922176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr5:3500980-3500795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr5:3789372-3789556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):56, 14

               
               
               Conread position:353-540
               
               
               Cow position:chr5:12921546-12921730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):63, 69

               
               
               Conread position:353-540
               
               
               Cow position:chr5:18250200-18250380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):56, 85

               
               
               Conread position:353-540
               
               
               Cow position:chr5:19978766-19978582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr5:21189369-21189551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:353-540
               
               
               Cow position:chr5:24101798-24101983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr5:24299161-24299346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):56, 156

               
               
               Conread position:353-540
               
               
               Cow position:chr5:29742413-29742228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):56, 156

               
               
               Conread position:353-540
               
               
               Cow position:chr5:30582474-30582659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr5:43437794-43437609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):56, 161

               
               
               Conread position:353-540
               
               
               Cow position:chr5:43984232-43984417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):58, 161

               
               
               Conread position:353-540
               
               
               Cow position:chr5:46676761-46676946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr5:47343021-47343207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):56, 161

               
               
               Conread position:353-540
               
               
               Cow position:chr5:53185355-53185170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):53, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr5:54785960-54785775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr5:55631212-55631397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr5:58245480-58245665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):38, 19

               
               
               Conread position:353-540
               
               
               Cow position:chr5:58770724-58770539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr5:64778854-64778668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):23, 154

               
               
               Conread position:353-540
               
               
               Cow position:chr5:73485738-73485553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):60, 161

               
               
               Conread position:353-542
               
               
               Cow position:chr5:36724576-36724393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):56, 14

               
               
               Conread position:353-544
               
               
               Cow position:chr5:16207010-16206822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):56, 76

               
               
               Conread position:353-544
               
               
               Cow position:chr5:18491550-18491749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:353-544
               
               
               Cow position:chr5:34300030-34300219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):61, 16

               
               
               Conread position:353-544
               
               
               Cow position:chr5:40828231-40828042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:156
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):56, 86

               
               
               Conread position:353-544
               
               
               Cow position:chr5:41951916-41951727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):56, 83

               
               
               Conread position:353-544
               
               
               Cow position:chr5:47854975-47855163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:160
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 158

               
               
               Conread position:353-544
               
               
               Cow position:chr5:49521847-49522040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):56, 173

               
               
               Conread position:353-544
               
               
               Cow position:chr5:50599207-50599394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:353-544
               
               
               Cow position:chr5:66337999-66338182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):57, 151

               
               
               Conread position:353-545
               
               
               Cow position:chr5:67654474-67654665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):60, 43

               
               
               Conread position:353-547
               
               
               Cow position:chr5:62159777-62159582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):60, 76

               
               
               Conread position:353-548
               
               
               Cow position:chr5:4629909-4630104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):56, 15

               
               
               Conread position:353-551
               
               
               Cow position:chr5:33775636-33775440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:354-517
               
               
               Cow position:chr5:1780433-1780269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):39, 112

               
               
               Conread position:354-544
               
               
               Cow position:chr5:62377516-62377701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:355-518
               
               
               Cow position:chr5:23845401-23845239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):54, 17

               
               
               Conread position:356-514
               
               
               Cow position:chr5:21827970-21828130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):53, 12

               
               
               Conread position:356-517
               
               
               Cow position:chr5:48574676-48574513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:356-518
               
               
               Cow position:chr5:280029-279867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):53, 150

               
               
               Conread position:356-539
               
               
               Cow position:chr5:26100881-26101067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):23, 163

               
               
               Conread position:356-540
               
               
               Cow position:chr5:1338770-1338588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):53, 150

               
               
               Conread position:356-540
               
               
               Cow position:chr5:54337053-54337235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):57, 150

               
               
               Conread position:356-543
               
               
               Cow position:chr5:72007742-72007554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:150
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:356-544
               
               
               Cow position:chr5:42743942-42744127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:155
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):152, 0

               
               
               Conread position:356-544
               
               
               Cow position:chr5:58145490-58145313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:357-518
               
               
               Cow position:chr5:37735528-37735688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):56, 94

               
               
               Conread position:357-540
               
               
               Cow position:chr5:14636427-14636246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):52, 149

               
               
               Conread position:357-541
               
               
               Cow position:chr5:5682359-5682171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):52, 150

               
               
               Conread position:358-521
               
               
               Cow position:chr5:1344736-1344573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):55, 22

               
               
               Conread position:359-522
               
               
               Cow position:chr5:5787176-5787012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:359-544
               
               
               Cow position:chr5:12558427-12558240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):34, 155

               
               
               Conread position:359-544
               
               
               Cow position:chr5:14833484-14833294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):50, 23

               
               
               Conread position:360-544
               
               
               Cow position:chr5:4165787-4165962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:360-544
               
               
               Cow position:chr5:52646185-52646006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):53, 146

               
               
               Conread position:361-505
               
               
               Cow position:chr5:16100405-16100260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):19, 7

               
               
               Conread position:361-511
               
               
               Cow position:chr5:27491132-27491284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:361-517
               
               
               Cow position:chr5:15856073-15855919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):49, 88

               
               
               Conread position:361-544
               
               
               Cow position:chr5:22857477-22857296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):54, 154

               
               
               Conread position:361-544
               
               
               Cow position:chr5:34532772-34532955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:361-544
               
               
               Cow position:chr5:36406312-36406495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):52, 150

               
               
               Conread position:361-551
               
               
               Cow position:chr5:31503301-31503494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):54, 187

               
               
               Conread position:364-519
               
               
               Cow position:chr5:47081353-47081507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):52, 146

               
               
               Conread position:367-518
               
               
               Cow position:chr5:46797062-46797213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):42, 144

               
               
               Conread position:367-518
               
               
               Cow position:chr5:59771210-59771359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):42, 99

               
               
               Conread position:368-540
               
               
               Cow position:chr5:7396406-7396576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):41, 138

               
               
               Conread position:375-511
               
               
               Cow position:chr5:26466795-26466931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:382-544
               
               
               Cow position:chr5:742283-742123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):27, 132

               
               
               Conread position:382-544
               
               
               Cow position:chr5:6840011-6839844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):31, 69

               
               
               Conread position:383-544
               
               
               Cow position:chr5:34637617-34637780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):26, 131

               
               
               Conread position:384-544
               
               
               Cow position:chr5:72345663-72345505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):25, 135

               
               
               Conread position:387-540
               
               
               Cow position:chr5:7277052-7277203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):22, 37

               
               
               Conread position:395-511
               
               
               Cow position:chr5:72172192-72172309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:92
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:401-551
               
               
               Cow position:chr5:29122832-29122683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):5, 116

               
               
               Conread position:408-540
               
               
               Cow position:chr5:3544500-3544629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:347-517
               
               
               Cow position:chr6:27526680-27526515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):62, 9

               
               
               Conread position:351-540
               
               
               Cow position:chr6:11721923-11721735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):58, 158

               
               
               Conread position:352-538
               
               
               Cow position:chr6:20552955-20552773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):61, 17

               
               
               Conread position:353-507
               
               
               Cow position:chr6:2111113-2110958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:353-508
               
               
               Cow position:chr6:7191325-7191172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):56, 43

               
               
               Conread position:353-508
               
               
               Cow position:chr6:53461892-53461736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:353-512
               
               
               Cow position:chr6:35704230-35704070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:353-513
               
               
               Cow position:chr6:34548320-34548481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:353-513
               
               
               Cow position:chr6:40975455-40975616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:353-515
               
               
               Cow position:chr6:33896354-33896192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):56, 27

               
               
               Conread position:353-518
               
               
               Cow position:chr6:34493962-34494127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-518
               
               
               Cow position:chr6:34504234-34504069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-518
               
               
               Cow position:chr6:36531561-36531726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-518
               
               
               Cow position:chr6:40550413-40550248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):56, 162

               
               
               Conread position:353-519
               
               
               Cow position:chr6:55474593-55474759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):56, 161

               
               
               Conread position:353-520
               
               
               Cow position:chr6:478837-479007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:353-521
               
               
               Cow position:chr6:12535007-12535170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:353-528
               
               
               Cow position:chr6:28136039-28136214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):56, 19

               
               
               Conread position:353-536
               
               
               Cow position:chr6:34843426-34843243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):56, 145

               
               
               Conread position:353-538
               
               
               Cow position:chr6:35600965-35601147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):56, 156

               
               
               Conread position:353-539
               
               
               Cow position:chr6:8754168-8753984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-539
               
               
               Cow position:chr6:10681271-10681455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):60, 158

               
               
               Conread position:353-539
               
               
               Cow position:chr6:24242574-24242758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr6:3485132-3484947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr6:5946488-5946303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr6:8205474-8205659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr6:8535507-8535326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:353-540
               
               
               Cow position:chr6:15137886-15137701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):60, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr6:15275953-15275768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):56, 156

               
               
               Conread position:353-540
               
               
               Cow position:chr6:16593237-16593420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):56, 43

               
               
               Conread position:353-540
               
               
               Cow position:chr6:17049660-17049845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):57, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr6:17111878-17111694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):56, 31

               
               
               Conread position:353-540
               
               
               Cow position:chr6:20451247-20451431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):56, 39

               
               
               Conread position:353-540
               
               
               Cow position:chr6:35873442-35873260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:353-540
               
               
               Cow position:chr6:39331246-39331061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr6:40863745-40863560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):56, 162

               
               
               Conread position:353-540
               
               
               Cow position:chr6:48873037-48872852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr6:50571478-50571663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):56, 150

               
               
               Conread position:353-540
               
               
               Cow position:chr6:51717841-51718029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):56, 159

               
               
               Conread position:353-540
               
               
               Cow position:chr6:51733368-51733553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):56, 152

               
               
               Conread position:353-540
               
               
               Cow position:chr6:55538984-55538799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr6:60332630-60332817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):54, 169

               
               
               Conread position:353-541
               
               
               Cow position:chr6:1245634-1245448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-541
               
               
               Cow position:chr6:7467363-7467178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):59, 14

               
               
               Conread position:353-542
               
               
               Cow position:chr6:28102582-28102399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:353-542
               
               
               Cow position:chr6:39999172-39998985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):56, 152

               
               
               Conread position:353-544
               
               
               Cow position:chr6:47380970-47381160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:153
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):56, 168

               
               
               Conread position:353-544
               
               
               Cow position:chr6:54472359-54472176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):56, 99

               
               
               Conread position:353-544
               
               
               Cow position:chr6:56842308-56842499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:155
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):56, 157

               
               
               Conread position:353-551
               
               
               Cow position:chr6:55903376-55903571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):54, 153

               
               
               Conread position:354-521
               
               
               Cow position:chr6:28549747-28549580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):29, 18

               
               
               Conread position:356-517
               
               
               Cow position:chr6:41231778-41231938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):53, 36

               
               
               Conread position:356-519
               
               
               Cow position:chr6:50526800-50526963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):55, 36

               
               
               Conread position:356-540
               
               
               Cow position:chr6:17121680-17121861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):53, 28

               
               
               Conread position:356-540
               
               
               Cow position:chr6:60876586-60876767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):53, 150

               
               
               Conread position:356-544
               
               
               Cow position:chr6:9839847-9839652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:356-544
               
               
               Cow position:chr6:10695012-10695197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):154, 0

               
               
               Conread position:356-544
               
               
               Cow position:chr6:38438896-38439087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):53, 159

               
               
               Conread position:356-544
               
               
               Cow position:chr6:41677219-41677405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):161, 0

               
               
               Conread position:356-544
               
               
               Cow position:chr6:57857060-57857246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):53, 153

               
               
               Conread position:356-544
               
               
               Cow position:chr6:58915046-58914862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):53, 118

               
               
               Conread position:357-540
               
               
               Cow position:chr6:11289176-11288995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):52, 149

               
               
               Conread position:357-540
               
               
               Cow position:chr6:58031068-58031248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):52, 154

               
               
               Conread position:358-518
               
               
               Cow position:chr6:706290-706450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):51, 148

               
               
               Conread position:358-544
               
               
               Cow position:chr6:65941719-65941533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):51, 155

               
               
               Conread position:359-543
               
               
               Cow position:chr6:32286844-32287029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:158
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:359-544
               
               
               Cow position:chr6:1274555-1274378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):44, 21

               
               
               Conread position:361-508
               
               
               Cow position:chr6:66751067-66751212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:361-521
               
               
               Cow position:chr6:2087818-2087979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):52, 124

               
               
               Conread position:361-540
               
               
               Cow position:chr6:15471518-15471342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):54, 150

               
               
               Conread position:361-543
               
               
               Cow position:chr6:52240535-52240356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):48, 11

               
               
               Conread position:362-506
               
               
               Cow position:chr6:61180920-61180776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:364-544
               
               
               Cow position:chr6:19059574-19059748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):42, 147

               
               
               Conread position:368-518
               
               
               Cow position:chr6:1263458-1263608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):41, 138

               
               
               Conread position:368-538
               
               
               Cow position:chr6:40813663-40813831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):41, 141

               
               
               Conread position:368-540
               
               
               Cow position:chr6:182249-182081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:368-542
               
               
               Cow position:chr6:41409905-41410075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:371-552
               
               
               Cow position:chr6:47848623-47848443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):42, 150

               
               
               Conread position:374-544
               
               
               Cow position:chr6:2545501-2545666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):35, 137

               
               
               Conread position:375-544
               
               
               Cow position:chr6:7175343-7175176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):34, 63

               
               
               Conread position:375-544
               
               
               Cow position:chr6:32271896-32271734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):34, 85

               
               
               Conread position:376-514
               
               
               Cow position:chr6:15181467-15181606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:379-517
               
               
               Cow position:chr6:60455977-60456118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:381-544
               
               
               Cow position:chr6:11193268-11193105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):23, 131

               
               
               Conread position:387-542
               
               
               Cow position:chr6:42420439-42420592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):129, 26

               
               
               Conread position:387-544
               
               
               Cow position:chr6:3893314-3893159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:387-544
               
               
               Cow position:chr6:32018780-32018628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:345-540
               
               
               Cow position:chr7:759485-759294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):64, 10

               
               
               Conread position:352-544
               
               
               Cow position:chr7:4451738-4451930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:160
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):59, 7

               
               
               Conread position:352-545
               
               
               Cow position:chr7:18934429-18934237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):64, 15

               
               
               Conread position:353-508
               
               
               Cow position:chr7:13530527-13530371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:353-508
               
               
               Cow position:chr7:24805114-24804958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:353-516
               
               
               Cow position:chr7:69065639-69065802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):59, 158

               
               
               Conread position:353-517
               
               
               Cow position:chr7:39795245-39795409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-517
               
               
               Cow position:chr7:47045602-47045767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:140
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:353-517
               
               
               Cow position:chr7:52294291-52294457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:353-517
               
               
               Cow position:chr7:60489158-60489322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):46, 114

               
               
               Conread position:353-517
               
               
               Cow position:chr7:61762465-61762630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:136
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:353-518
               
               
               Cow position:chr7:46898998-46898833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-518
               
               
               Cow position:chr7:48274846-48274681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):56, 158

               
               
               Conread position:353-518
               
               
               Cow position:chr7:68528983-68529149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:353-520
               
               
               Cow position:chr7:69018629-69018793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:353-536
               
               
               Cow position:chr7:52762153-52761971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):56, 154

               
               
               Conread position:353-536
               
               
               Cow position:chr7:62732353-62732538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):60, 161

               
               
               Conread position:353-539
               
               
               Cow position:chr7:55688602-55688418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:151
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):58, 158

               
               
               Conread position:353-540
               
               
               Cow position:chr7:194536-194351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):58, 161

               
               
               Conread position:353-540
               
               
               Cow position:chr7:8140704-8140519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr7:14135436-14135251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr7:16934682-16934868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):56, 154

               
               
               Conread position:353-540
               
               
               Cow position:chr7:21231641-21231458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):56, 112

               
               
               Conread position:353-540
               
               
               Cow position:chr7:21990021-21990206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr7:29363627-29363441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):56, 154

               
               
               Conread position:353-540
               
               
               Cow position:chr7:30664400-30664585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr7:34152319-34152502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):56, 44

               
               
               Conread position:353-540
               
               
               Cow position:chr7:46749360-46749544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):60, 156

               
               
               Conread position:353-540
               
               
               Cow position:chr7:47190364-47190180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):48, 100

               
               
               Conread position:353-540
               
               
               Cow position:chr7:59774688-59774870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):56, 87

               
               
               Conread position:353-541
               
               
               Cow position:chr7:45170910-45171096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-542
               
               
               Cow position:chr7:21009789-21009601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):60, 16

               
               
               Conread position:353-544
               
               
               Cow position:chr7:5250788-5250601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):65, 55

               
               
               Conread position:353-544
               
               
               Cow position:chr7:14081816-14081631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):57, 27

               
               
               Conread position:353-544
               
               
               Cow position:chr7:20536458-20536646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):56, 171

               
               
               Conread position:353-544
               
               
               Cow position:chr7:23457636-23457446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:158
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 0

               
               
               Conread position:353-544
               
               
               Cow position:chr7:33064955-33064772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):60, 28

               
               
               Conread position:353-544
               
               
               Cow position:chr7:34413153-34412956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):71, 171

               
               
               Conread position:353-544
               
               
               Cow position:chr7:39902721-39902911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:160
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 158

               
               
               Conread position:353-544
               
               
               Cow position:chr7:42594170-42593980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:157
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 165

               
               
               Conread position:353-544
               
               
               Cow position:chr7:48242577-48242764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:155
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):62, 150

               
               
               Conread position:353-544
               
               
               Cow position:chr7:48722704-48722511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:157
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):30, 110

               
               
               Conread position:353-544
               
               
               Cow position:chr7:57910744-57910934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):56, 158

               
               
               Conread position:353-544
               
               
               Cow position:chr7:63947739-63947553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):57, 115

               
               
               Conread position:353-545
               
               
               Cow position:chr7:58196787-58196597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-546
               
               
               Cow position:chr7:53070500-53070690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):152, 0

               
               
               Conread position:353-547
               
               
               Cow position:chr7:18871628-18871437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):56, 31

               
               
               Conread position:353-547
               
               
               Cow position:chr7:27712962-27713153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):152, 0

               
               
               Conread position:353-547
               
               
               Cow position:chr7:56887632-56887442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:157
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):57, 171

               
               
               Conread position:353-552
               
               
               Cow position:chr7:60741563-60741364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:157
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):56, 183

               
               
               Conread position:354-517
               
               
               Cow position:chr7:3388906-3389062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:354-540
               
               
               Cow position:chr7:66908622-66908806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):55, 160

               
               
               Conread position:355-542
               
               
               Cow position:chr7:35110713-35110899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):54, 166

               
               
               Conread position:355-542
               
               
               Cow position:chr7:40120593-40120776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):54, 35

               
               
               Conread position:355-551
               
               
               Cow position:chr7:31637909-31638102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):54, 72

               
               
               Conread position:356-511
               
               
               Cow position:chr7:58718497-58718653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:356-514
               
               
               Cow position:chr7:65870119-65869959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:356-518
               
               
               Cow position:chr7:39401112-39401274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):53, 155

               
               
               Conread position:356-522
               
               
               Cow position:chr7:52383831-52383669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:356-538
               
               
               Cow position:chr7:64104247-64104064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):54, 13

               
               
               Conread position:356-540
               
               
               Cow position:chr7:10604716-10604530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):42, 154

               
               
               Conread position:356-542
               
               
               Cow position:chr7:12506017-12506200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:356-543
               
               
               Cow position:chr7:51198-51008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:356-544
               
               
               Cow position:chr7:467195-467008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:356-544
               
               
               Cow position:chr7:19398816-19398628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:356-544
               
               
               Cow position:chr7:57209462-57209275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):57, 158

               
               
               Conread position:356-544
               
               
               Cow position:chr7:68446187-68446374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):54, 77

               
               
               Conread position:356-547
               
               
               Cow position:chr7:21124288-21124100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):53, 153

               
               
               Conread position:357-515
               
               
               Cow position:chr7:47877149-47876991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:357-520
               
               
               Cow position:chr7:63379494-63379330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):55, 63

               
               
               Conread position:357-540
               
               
               Cow position:chr7:61576752-61576571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):52, 148

               
               
               Conread position:357-540
               
               
               Cow position:chr7:67802711-67802892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):52, 149

               
               
               Conread position:357-544
               
               
               Cow position:chr7:68575523-68575694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:358-540
               
               
               Cow position:chr7:64238677-64238497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):51, 148

               
               
               Conread position:358-542
               
               
               Cow position:chr7:64330056-64330228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:358-544
               
               
               Cow position:chr7:24851873-24851689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:358-551
               
               
               Cow position:chr7:68928676-68928868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):55, 24

               
               
               Conread position:359-540
               
               
               Cow position:chr7:45928786-45928609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):50, 103

               
               
               Conread position:359-544
               
               
               Cow position:chr7:33719126-33719312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:153
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):51, 70

               
               
               Conread position:361-508
               
               
               Cow position:chr7:68263666-68263814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:361-511
               
               
               Cow position:chr7:39419750-39419598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:361-514
               
               
               Cow position:chr7:48860351-48860198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):48, 150

               
               
               Conread position:361-542
               
               
               Cow position:chr7:13103916-13103736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):48, 109

               
               
               Conread position:361-544
               
               
               Cow position:chr7:36472340-36472522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):54, 93

               
               
               Conread position:361-544
               
               
               Cow position:chr7:48762780-48762599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):52, 153

               
               
               Conread position:361-544
               
               
               Cow position:chr7:61772496-61772309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):46, 161

               
               
               Conread position:361-546
               
               
               Cow position:chr7:5436638-5436455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):48, 154

               
               
               Conread position:361-551
               
               
               Cow position:chr7:35805911-35806092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:363-535
               
               
               Cow position:chr7:49107807-49107640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):46, 27

               
               
               Conread position:368-518
               
               
               Cow position:chr7:23130194-23130346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:368-521
               
               
               Cow position:chr7:59558991-59558837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:368-544
               
               
               Cow position:chr7:28089428-28089606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):44, 89

               
               
               Conread position:371-511
               
               
               Cow position:chr7:57578078-57577939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):42, 10

               
               
               Conread position:372-502
               
               
               Cow position:chr7:20802799-20802666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:375-539
               
               
               Cow position:chr7:20105854-20105694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):38, 130

               
               
               Conread position:376-538
               
               
               Cow position:chr7:55290177-55290017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):33, 130

               
               
               Conread position:376-544
               
               
               Cow position:chr7:38145478-38145312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):37, 19

               
               
               Conread position:382-520
               
               
               Cow position:chr7:56080427-56080564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):27, 80

               
               
               Conread position:382-544
               
               
               Cow position:chr7:34538004-34538164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):27, 15

               
               
               Conread position:384-544
               
               
               Cow position:chr7:19457196-19457035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):14, 86

               
               
               Conread position:387-517
               
               
               Cow position:chr7:26770944-26771075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:408-518
               
               
               Cow position:chr7:36745507-36745617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:91
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):29, 106

               
               
               Conread position:408-544
               
               
               Cow position:chr7:3027725-3027593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:408-544
               
               
               Cow position:chr7:39451988-39451855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:413-544
               
               
               Cow position:chr7:64573887-64573759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:346-540
               
               
               Cow position:chr8:25671847-25672039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):63, 160

               
               
               Conread position:347-518
               
               
               Cow position:chr8:49284515-49284345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):62, 12

               
               
               Conread position:347-540
               
               
               Cow position:chr8:12452639-12452827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):62, 9

               
               
               Conread position:350-549
               
               
               Cow position:chr8:25677972-25677778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):66, 175

               
               
               Conread position:351-517
               
               
               Cow position:chr8:22030675-22030841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):58, 155

               
               
               Conread position:352-544
               
               
               Cow position:chr8:37534581-37534772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):58, 12

               
               
               Conread position:353-501
               
               
               Cow position:chr8:29011764-29011913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:353-504
               
               
               Cow position:chr8:8135818-8135667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):60, 16

               
               
               Conread position:353-504
               
               
               Cow position:chr8:12779707-12779559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:353-514
               
               
               Cow position:chr8:33993284-33993445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):56, 17

               
               
               Conread position:353-517
               
               
               Cow position:chr8:17315157-17315321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):56, 161

               
               
               Conread position:353-517
               
               
               Cow position:chr8:19052847-19053014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:353-517
               
               
               Cow position:chr8:22145069-22145232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):56, 27

               
               
               Conread position:353-517
               
               
               Cow position:chr8:32315065-32314900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:353-517
               
               
               Cow position:chr8:51674710-51674874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-517
               
               
               Cow position:chr8:60067441-60067605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):56, 69

               
               
               Conread position:353-518
               
               
               Cow position:chr8:3333099-3332934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-518
               
               
               Cow position:chr8:5243879-5243715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:353-518
               
               
               Cow position:chr8:6077412-6077253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:353-518
               
               
               Cow position:chr8:8009955-8010121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:353-518
               
               
               Cow position:chr8:8914288-8914453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-518
               
               
               Cow position:chr8:11118394-11118230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):152, 0

               
               
               Conread position:353-518
               
               
               Cow position:chr8:14925324-14925160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):56, 15

               
               
               Conread position:353-518
               
               
               Cow position:chr8:21789266-21789101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-518
               
               
               Cow position:chr8:47466815-47466650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):60, 153

               
               
               Conread position:353-518
               
               
               Cow position:chr8:50283655-50283490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-519
               
               
               Cow position:chr8:3853333-3853166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:353-520
               
               
               Cow position:chr8:55089908-55090073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):163, 60

               
               
               Conread position:353-523
               
               
               Cow position:chr8:9237623-9237451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):150, 19

               
               
               Conread position:353-528
               
               
               Cow position:chr8:12813954-12814129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):56, 44

               
               
               Conread position:353-538
               
               
               Cow position:chr8:51603322-51603138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):56, 19

               
               
               Conread position:353-539
               
               
               Cow position:chr8:18568339-18568158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):56, 96

               
               
               Conread position:353-539
               
               
               Cow position:chr8:24912483-24912299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr8:2166962-2166777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):56, 156

               
               
               Conread position:353-540
               
               
               Cow position:chr8:10740013-10739828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr8:14588309-14588125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):56, 102

               
               
               Conread position:353-540
               
               
               Cow position:chr8:19334151-19334336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):60, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr8:21989663-21989848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr8:22376625-22376441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):56, 14

               
               
               Conread position:353-540
               
               
               Cow position:chr8:23774458-23774643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):56, 39

               
               
               Conread position:353-540
               
               
               Cow position:chr8:26039179-26039364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):56, 158

               
               
               Conread position:353-540
               
               
               Cow position:chr8:33898357-33898173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):57, 94

               
               
               Conread position:353-540
               
               
               Cow position:chr8:35472865-35473050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr8:36333086-36332902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr8:38394008-38394192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr8:39192347-39192162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr8:41650293-41650480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):56, 155

               
               
               Conread position:353-540
               
               
               Cow position:chr8:46843753-46843568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):56, 156

               
               
               Conread position:353-540
               
               
               Cow position:chr8:50927541-50927357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):56, 70

               
               
               Conread position:353-540
               
               
               Cow position:chr8:60266930-60267115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr8:61197708-61197523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-541
               
               
               Cow position:chr8:14302260-14302446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):56, 150

               
               
               Conread position:353-541
               
               
               Cow position:chr8:16733042-16732857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):56, 6

               
               
               Conread position:353-541
               
               
               Cow position:chr8:38574104-38573925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:353-541
               
               
               Cow position:chr8:42159190-42159376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-541
               
               
               Cow position:chr8:50800260-50800074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-544
               
               
               Cow position:chr8:18080526-18080711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:353-544
               
               
               Cow position:chr8:32966685-32966872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:156
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):60, 164

               
               
               Conread position:353-544
               
               
               Cow position:chr8:35529242-35529431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):59, 153

               
               
               Conread position:353-548
               
               
               Cow position:chr8:39987348-39987156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):58, 158

               
               
               Conread position:353-559
               
               
               Cow position:chr8:59258438-59258225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):44, 162

               
               
               Conread position:354-550
               
               
               Cow position:chr8:49620002-49620196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):58, 152

               
               
               Conread position:355-519
               
               
               Cow position:chr8:50949052-50948887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):28, 131

               
               
               Conread position:355-544
               
               
               Cow position:chr8:55714678-55714874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):50, 157

               
               
               Conread position:356-511
               
               
               Cow position:chr8:18208083-18207932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:356-517
               
               
               Cow position:chr8:17268298-17268135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:356-518
               
               
               Cow position:chr8:24868654-24868491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:141
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:356-518
               
               
               Cow position:chr8:51702128-51702295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):75, 143

               
               
               Conread position:356-519
               
               
               Cow position:chr8:54302101-54302265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):57, 112

               
               
               Conread position:356-536
               
               
               Cow position:chr8:53428956-53429136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):58, 171

               
               
               Conread position:356-540
               
               
               Cow position:chr8:5020572-5020754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):53, 150

               
               
               Conread position:356-542
               
               
               Cow position:chr8:13831370-13831186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):53, 150

               
               
               Conread position:356-544
               
               
               Cow position:chr8:33692533-33692720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):58, 16

               
               
               Conread position:356-547
               
               
               Cow position:chr8:31252930-31253119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):56, 158

               
               
               Conread position:358-520
               
               
               Cow position:chr8:9131837-9131674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:358-543
               
               
               Cow position:chr8:3148292-3148109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):56, 22

               
               
               Conread position:358-544
               
               
               Cow position:chr8:50315978-50315804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):51, 71

               
               
               Conread position:361-516
               
               
               Cow position:chr8:53004322-53004167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):50, 150

               
               
               Conread position:361-519
               
               
               Cow position:chr8:18683865-18683709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:361-520
               
               
               Cow position:chr8:37501858-37502018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:361-533
               
               
               Cow position:chr8:11136564-11136393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):57, 151

               
               
               Conread position:361-540
               
               
               Cow position:chr8:49220751-49220928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):48, 145

               
               
               Conread position:361-544
               
               
               Cow position:chr8:21948691-21948503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):48, 166

               
               
               Conread position:362-514
               
               
               Cow position:chr8:42602784-42602935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):47, 21

               
               
               Conread position:363-551
               
               
               Cow position:chr8:31261811-31261998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):46, 159

               
               
               Conread position:363-552
               
               
               Cow position:chr8:45079146-45078958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):50, 111

               
               
               Conread position:364-517
               
               
               Cow position:chr8:27658425-27658573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:364-536
               
               
               Cow position:chr8:16302647-16302817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):45, 142

               
               
               Conread position:367-544
               
               
               Cow position:chr8:12150903-12151076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:367-544
               
               
               Cow position:chr8:29028941-29028762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):43, 80

               
               
               Conread position:369-524
               
               
               Cow position:chr8:46214916-46214762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):46, 141

               
               
               Conread position:372-518
               
               
               Cow position:chr8:7105320-7105179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:375-544
               
               
               Cow position:chr8:46624902-46624740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:384-517
               
               
               Cow position:chr8:29417202-29417069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):29, 127

               
               
               Conread position:386-542
               
               
               Cow position:chr8:45824029-45824183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):23, 137

               
               
               Conread position:387-536
               
               
               Cow position:chr8:3291419-3291271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):5, 43

               
               
               Conread position:389-540
               
               
               Cow position:chr8:58034757-58034608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):20, 120

               
               
               Conread position:398-542
               
               
               Cow position:chr8:54194706-54194852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:262-508
               
               
               Cow position:chr9:10665037-10665275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):134, 58

               
               
               Conread position:306-542
               
               
               Cow position:chr9:35592971-35592736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):108, 205

               
               
               Conread position:347-518
               
               
               Cow position:chr9:61237559-61237383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:347-542
               
               
               Cow position:chr9:5414839-5414648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):62, 9

               
               
               Conread position:352-544
               
               
               Cow position:chr9:4647427-4647237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):57, 15

               
               
               Conread position:352-544
               
               
               Cow position:chr9:40316352-40316539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:353-503
               
               
               Cow position:chr9:8951834-8951682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:353-507
               
               
               Cow position:chr9:5628035-5628190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:353-508
               
               
               Cow position:chr9:55796890-55796734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:353-511
               
               
               Cow position:chr9:29300804-29300647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):59, 27

               
               
               Conread position:353-511
               
               
               Cow position:chr9:37097821-37097978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:353-511
               
               
               Cow position:chr9:51556183-51556342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:353-515
               
               
               Cow position:chr9:18506608-18506444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:353-516
               
               
               Cow position:chr9:17870722-17870884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:353-516
               
               
               Cow position:chr9:19156076-19155913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):60, 153

               
               
               Conread position:353-517
               
               
               Cow position:chr9:26087787-26087625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:353-518
               
               
               Cow position:chr9:1991338-1991173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-518
               
               
               Cow position:chr9:7005957-7006121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):57, 79

               
               
               Conread position:353-518
               
               
               Cow position:chr9:9016290-9016455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):57, 153

               
               
               Conread position:353-518
               
               
               Cow position:chr9:10326449-10326614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):57, 161

               
               
               Conread position:353-518
               
               
               Cow position:chr9:10857249-10857413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):61, 19

               
               
               Conread position:353-538
               
               
               Cow position:chr9:4305870-4305686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):52, 34

               
               
               Conread position:353-538
               
               
               Cow position:chr9:29106091-29106274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-539
               
               
               Cow position:chr9:9515886-9516066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:353-540
               
               
               Cow position:chr9:3756623-3756438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr9:5007189-5007366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):56, 75

               
               
               Conread position:353-540
               
               
               Cow position:chr9:6252780-6252965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr9:6764553-6764368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr9:7058835-7058650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):56, 75

               
               
               Conread position:353-540
               
               
               Cow position:chr9:12285492-12285307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):56, 156

               
               
               Conread position:353-540
               
               
               Cow position:chr9:17302762-17302579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):56, 44

               
               
               Conread position:353-540
               
               
               Cow position:chr9:21412513-21412704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):56, 159

               
               
               Conread position:353-540
               
               
               Cow position:chr9:24918072-24917887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr9:27038329-27038514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):59, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr9:28657841-28657656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr9:31810793-31810978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr9:42570431-42570616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):56, 152

               
               
               Conread position:353-540
               
               
               Cow position:chr9:42868656-42868471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chr9:59454681-59454496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):56, 152

               
               
               Conread position:353-542
               
               
               Cow position:chr9:16178800-16178987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-542
               
               
               Cow position:chr9:58615480-58615290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):56, 19

               
               
               Conread position:353-544
               
               
               Cow position:chr9:5030715-5030527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):57, 156

               
               
               Conread position:353-544
               
               
               Cow position:chr9:16981853-16981664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-544
               
               
               Cow position:chr9:17307024-17307210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:353-544
               
               
               Cow position:chr9:23028814-23028624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):60, 158

               
               
               Conread position:353-544
               
               
               Cow position:chr9:23421802-23421994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):169, 62

               
               
               Conread position:353-544
               
               
               Cow position:chr9:28774051-28773860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):166, 27

               
               
               Conread position:353-544
               
               
               Cow position:chr9:34567862-34568050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):10, 20

               
               
               Conread position:353-545
               
               
               Cow position:chr9:33068285-33068085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:353-547
               
               
               Cow position:chr9:37158396-37158204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:355-519
               
               
               Cow position:chr9:11410420-11410585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:356-511
               
               
               Cow position:chr9:1856630-1856473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):25, 84

               
               
               Conread position:356-511
               
               
               Cow position:chr9:30737296-30737140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):53, 28

               
               
               Conread position:356-517
               
               
               Cow position:chr9:49151405-49151245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):157, 0

               
               
               Conread position:356-518
               
               
               Cow position:chr9:12161809-12161977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):57, 116

               
               
               Conread position:356-519
               
               
               Cow position:chr9:20577979-20578145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:143
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:356-539
               
               
               Cow position:chr9:217897-217714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):57, 153

               
               
               Conread position:356-540
               
               
               Cow position:chr9:2173754-2173934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):59, 47

               
               
               Conread position:356-540
               
               
               Cow position:chr9:22656017-22656199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):53, 159

               
               
               Conread position:356-540
               
               
               Cow position:chr9:55031723-55031905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):53, 153

               
               
               Conread position:356-540
               
               
               Cow position:chr9:59539128-59539303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):53, 84

               
               
               Conread position:356-541
               
               
               Cow position:chr9:19545729-19545912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):53, 150

               
               
               Conread position:356-544
               
               
               Cow position:chr9:20959014-20959204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:356-544
               
               
               Cow position:chr9:20988514-20988698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:160
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 159

               
               
               Conread position:356-553
               
               
               Cow position:chr9:62401103-62400908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:163
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 127

               
               
               Conread position:357-518
               
               
               Cow position:chr9:28822226-28822068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:357-540
               
               
               Cow position:chr9:59479637-59479456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):52, 149

               
               
               Conread position:358-514
               
               
               Cow position:chr9:21461683-21461838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:358-536
               
               
               Cow position:chr9:25974763-25974589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):157, 39

               
               
               Conread position:360-535
               
               
               Cow position:chr9:31078135-31078313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:147
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:361-519
               
               
               Cow position:chr9:44518474-44518317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:361-541
               
               
               Cow position:chr9:33845242-33845422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):52, 88

               
               
               Conread position:361-544
               
               
               Cow position:chr9:26123938-26124117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):149, 0

               
               
               Conread position:361-544
               
               
               Cow position:chr9:28702673-28702855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):48, 160

               
               
               Conread position:361-544
               
               
               Cow position:chr9:47263263-47263443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):54, 94

               
               
               Conread position:363-544
               
               
               Cow position:chr9:44920485-44920673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):19, 28

               
               
               Conread position:367-518
               
               
               Cow position:chr9:3546048-3546200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:367-544
               
               
               Cow position:chr9:10634144-10634320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):42, 25

               
               
               Conread position:368-509
               
               
               Cow position:chr9:28356193-28356052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):42, 79

               
               
               Conread position:374-542
               
               
               Cow position:chr9:28725836-28726002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):39, 140

               
               
               Conread position:375-544
               
               
               Cow position:chr9:38346915-38346753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):34, 91

               
               
               Conread position:376-540
               
               
               Cow position:chr9:2618546-2618384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):33, 130

               
               
               Conread position:382-542
               
               
               Cow position:chr9:56528462-56528620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):27, 129

               
               
               Conread position:383-542
               
               
               Cow position:chr9:12195211-12195054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):26, 123

               
               
               Conread position:386-540
               
               
               Cow position:chr9:10004631-10004478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):23, 124

               
               
               Conread position:387-544
               
               
               Cow position:chr9:3730276-3730428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):21, 125

               
               
               Conread position:388-540
               
               
               Cow position:chr9:52753970-52753820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):21, 117

               
               
               Conread position:397-544
               
               
               Cow position:chr9:59507955-59507812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:404-544
               
               
               Cow position:chr9:9985497-9985359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:111
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:413-511
               
               
               Cow position:chr9:15949972-15950070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:82
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:353-504
               
               
               Cow position:chrX:20792266-20792412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:353-508
               
               
               Cow position:chrX:24425391-24425235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:353-511
               
               
               Cow position:chrX:23415571-23415412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:353-514
               
               
               Cow position:chrX:1617110-1616949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):56, 158

               
               
               Conread position:353-514
               
               
               Cow position:chrX:40365621-40365459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:353-516
               
               
               Cow position:chrX:7572515-7572673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):56, 83

               
               
               Conread position:353-517
               
               
               Cow position:chrX:25573476-25573638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):56, 111

               
               
               Conread position:353-518
               
               
               Cow position:chrX:323038-323204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:353-518
               
               
               Cow position:chrX:4995734-4995900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:353-518
               
               
               Cow position:chrX:13430665-13430499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:353-518
               
               
               Cow position:chrX:16021252-16021088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):57, 158

               
               
               Conread position:353-518
               
               
               Cow position:chrX:18193814-18193979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-518
               
               
               Cow position:chrX:38150812-38150977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-519
               
               
               Cow position:chrX:11744391-11744560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:353-520
               
               
               Cow position:chrX:20674992-20675159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):60, 153

               
               
               Conread position:353-521
               
               
               Cow position:chrX:30354518-30354678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):152, 47

               
               
               Conread position:353-521
               
               
               Cow position:chrX:33803871-33803701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:353-536
               
               
               Cow position:chrX:40693605-40693424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):60, 158

               
               
               Conread position:353-538
               
               
               Cow position:chrX:35287550-35287733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:153
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):56, 72

               
               
               Conread position:353-539
               
               
               Cow position:chrX:15151551-15151367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:150
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):58, 158

               
               
               Conread position:353-539
               
               
               Cow position:chrX:16702795-16702979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chrX:865520-865705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chrX:1550089-1550274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):60, 153

               
               
               Conread position:353-540
               
               
               Cow position:chrX:4905863-4905681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:353-540
               
               
               Cow position:chrX:5354178-5353994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):56, 27

               
               
               Conread position:353-540
               
               
               Cow position:chrX:12178798-12178988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):32, 76

               
               
               Conread position:353-540
               
               
               Cow position:chrX:13406162-13405981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):56, 107

               
               
               Conread position:353-540
               
               
               Cow position:chrX:18950612-18950427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chrX:19657621-19657806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chrX:20953657-20953842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chrX:21226601-21226786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):60, 153

               
               
               Conread position:353-540
               
               
               Cow position:chrX:21582567-21582752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chrX:23387414-23387229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chrX:23395731-23395916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chrX:23452321-23452136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chrX:24442115-24441930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chrX:24588610-24588427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:353-540
               
               
               Cow position:chrX:27095253-27095438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chrX:27318355-27318540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chrX:29700819-29700643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):56, 100

               
               
               Conread position:353-540
               
               
               Cow position:chrX:29849499-29849320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):56, 15

               
               
               Conread position:353-540
               
               
               Cow position:chrX:30180800-30180618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):56, 87

               
               
               Conread position:353-540
               
               
               Cow position:chrX:32584807-32584622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-540
               
               
               Cow position:chrX:35239996-35240175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):56, 110

               
               
               Conread position:353-540
               
               
               Cow position:chrX:37134509-37134324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-541
               
               
               Cow position:chrX:15260495-15260309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-541
               
               
               Cow position:chrX:37852260-37852449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:353-542
               
               
               Cow position:chrX:12465156-12465343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):59, 153

               
               
               Conread position:353-542
               
               
               Cow position:chrX:25459515-25459327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):56, 154

               
               
               Conread position:353-542
               
               
               Cow position:chrX:29892211-29892397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):60, 153

               
               
               Conread position:353-544
               
               
               Cow position:chrX:1729733-1729545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):49, 14

               
               
               Conread position:353-544
               
               
               Cow position:chrX:4751242-4751059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:353-544
               
               
               Cow position:chrX:6543389-6543578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:153
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):163, 9

               
               
               Conread position:353-544
               
               
               Cow position:chrX:13178484-13178294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):56, 159

               
               
               Conread position:353-544
               
               
               Cow position:chrX:16525914-16526103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-544
               
               
               Cow position:chrX:18898525-18898336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-544
               
               
               Cow position:chrX:21592415-21592604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):59, 153

               
               
               Conread position:353-544
               
               
               Cow position:chrX:23341867-23341679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:353-544
               
               
               Cow position:chrX:23969478-23969667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:155
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:353-544
               
               
               Cow position:chrX:25204460-25204650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):56, 158

               
               
               Conread position:353-547
               
               
               Cow position:chrX:23572693-23572500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):50, 154

               
               
               Conread position:354-516
               
               
               Cow position:chrX:18455645-18455482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:354-519
               
               
               Cow position:chrX:35388794-35388628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:141
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:354-540
               
               
               Cow position:chrX:26531098-26531282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):55, 160

               
               
               Conread position:354-544
               
               
               Cow position:chrX:39559232-39559053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:355-521
               
               
               Cow position:chrX:2649223-2649059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):33, 79

               
               
               Conread position:356-540
               
               
               Cow position:chrX:27977707-27977525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):53, 150

               
               
               Conread position:356-542
               
               
               Cow position:chrX:29880153-29879969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):58, 150

               
               
               Conread position:356-544
               
               
               Cow position:chrX:620137-619946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:356-544
               
               
               Cow position:chrX:7805508-7805690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):53, 73

               
               
               Conread position:357-544
               
               
               Cow position:chrX:38935550-38935735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):52, 152

               
               
               Conread position:358-519
               
               
               Cow position:chrX:2524603-2524442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):52, 10

               
               
               Conread position:358-544
               
               
               Cow position:chrX:8104152-8103969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):55, 95

               
               
               Conread position:359-508
               
               
               Cow position:chrX:3155452-3155305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):129, 49

               
               
               Conread position:359-517
               
               
               Cow position:chrX:36839836-36839994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):50, 152

               
               
               Conread position:359-519
               
               
               Cow position:chrX:31804021-31804178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:361-514
               
               
               Cow position:chrX:23218206-23218355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:361-517
               
               
               Cow position:chrX:25405240-25405083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):48, 60

               
               
               Conread position:361-518
               
               
               Cow position:chrX:25282362-25282204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):48, 151

               
               
               Conread position:361-520
               
               
               Cow position:chrX:37832332-37832174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):48, 11

               
               
               Conread position:361-539
               
               
               Cow position:chrX:39463915-39463734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):38, 72

               
               
               Conread position:364-544
               
               
               Cow position:chrX:44193305-44193127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):45, 155

               
               
               Conread position:367-518
               
               
               Cow position:chrX:15993582-15993733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):42, 147

               
               
               Conread position:367-544
               
               
               Cow position:chrX:34008889-34009065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):46, 139

               
               
               Conread position:367-547
               
               
               Cow position:chrX:33822229-33822409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):42, 83

               
               
               Conread position:371-518
               
               
               Cow position:chrX:20999135-20998988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):7, 22

               
               
               Conread position:372-522
               
               
               Cow position:chrX:509003-508852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:378-518
               
               
               Cow position:chrX:22308428-22308288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):35, 131

               
               
               Conread position:382-544
               
               
               Cow position:chrX:40788288-40788447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:384-540
               
               
               Cow position:chrX:30144129-30143975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):25, 122

               
               
               Conread position:393-544
               
               
               Cow position:chrX:11083442-11083291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):16, 138

               
               
               Conread position:403-541
               
               
               Cow position:chrX:11613679-11613819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:408-518
               
               
               Cow position:chrX:26633898-26633789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:408-540
               
               
               Cow position:chrX:16854206-16854077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:409-544
               
               
               Cow position:chrX:16517951-16517819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:410-533
               
               
               Cow position:chrX:37781886-37781765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:414-544
               
               
               Cow position:chrX:38007799-38007669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0