Cow genome map
| Conread name: | Lym1-jns113_B03.f |
| Conread position: | 1-373 |
| Cow position: | chr10:7116044-7116441 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 270 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 39, 56 |
| Conread position: | 83-372 |
| Cow position: | chr10:43285283-43285580 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 41, 50 |
| Conread position: | 141-355 |
| Cow position: | chr10:40505593-40505372 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 82, 129 |
| Conread position: | 144-373 |
| Cow position: | chr10:7298889-7299133 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 22, 118 |
| Conread position: | 1-339 |
| Cow position: | chr11:56521737-56522063 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 128, 61 |
| Conread position: | 1-373 |
| Cow position: | chr11:60703159-60702800 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 138, 50 |
| Conread position: | 4-333 |
| Cow position: | chr11:64315880-64316217 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 30, 56 |
| Conread position: | 9-320 |
| Cow position: | chr11:60677104-60677433 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 24-373 |
| Cow position: | chr11:49801385-49801033 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 239 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 108, 23 |
| Conread position: | 68-373 |
| Cow position: | chr11:3266456-3266136 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 59, 110 |
| Conread position: | 107-373 |
| Cow position: | chr11:51022262-51022540 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 184 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 17, 110 |
| Conread position: | 142-373 |
| Cow position: | chr11:22323362-22323611 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 68-333 |
| Cow position: | chr12:25868850-25868576 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 56, 111 |
| Conread position: | 1-373 |
| Cow position: | chr13:19141990-19142382 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 266 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 46, 71 |
| Conread position: | 43-364 |
| Cow position: | chr13:45000487-45000812 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 228 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 123, 20 |
| Conread position: | 1-373 |
| Cow position: | chr14:41960323-41960703 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 255 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 39, 79 |
| Conread position: | 47-355 |
| Cow position: | chr14:33681064-33680733 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 228 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 24, 88 |
| Conread position: | 51-373 |
| Cow position: | chr14:35278191-35278520 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 217 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 12, 245 |
| Conread position: | 73-373 |
| Cow position: | chr14:23915780-23916105 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 77-371 |
| Cow position: | chr14:32600635-32600933 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 45, 52 |
| Conread position: | 141-372 |
| Cow position: | chr14:41720111-41719862 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 23, 50 |
| Conread position: | 225-373 |
| Cow position: | chr14:6183495-6183646 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 6-303 |
| Cow position: | chr15:40328679-40328367 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 57, 28 |
| Conread position: | 18-372 |
| Cow position: | chr15:5443470-5443101 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 51, 38 |
| Conread position: | 47-372 |
| Cow position: | chr15:29325390-29325722 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 80, 23 |
| Conread position: | 69-373 |
| Cow position: | chr15:30633684-30633356 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 233-364 |
| Cow position: | chr15:9743858-9743724 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 1-373 |
| Cow position: | chr16:42276980-42276594 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 260 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 51, 33 |
| Conread position: | 45-373 |
| Cow position: | chr17:40283214-40282867 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 243 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 91, 25 |
| Conread position: | 73-373 |
| Cow position: | chr17:7423321-7423626 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 63, 109 |
| Conread position: | 146-373 |
| Cow position: | chr17:1888643-1888887 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 92-373 |
| Cow position: | chr18:23619657-23619373 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 195 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 32, 42 |
| Conread position: | 163-372 |
| Cow position: | chr18:23708599-23708825 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 77-339 |
| Cow position: | chr20:20136312-20136594 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 95-372 |
| Cow position: | chr20:7108719-7109014 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 14, 53 |
| Conread position: | 1-372 |
| Cow position: | chr21:32206136-32205756 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 269 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 30, 57 |
| Conread position: | 23-373 |
| Cow position: | chr21:43603011-43603386 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 16, 149 |
| Conread position: | 226-373 |
| Cow position: | chr21:5629340-5629490 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 1-340 |
| Cow position: | chr22:21203960-21204312 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 239 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 38, 57 |
| Conread position: | 1-364 |
| Cow position: | chr22:40134743-40135122 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 266 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 115, 36 |
| Conread position: | 1-372 |
| Cow position: | chr22:22046125-22045748 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 253 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 68, 223 |
| Conread position: | 92-373 |
| Cow position: | chr22:45611352-45611645 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 21, 43 |
| Conread position: | 177-365 |
| Cow position: | chr22:44798125-44798313 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 165, 121 |
| Conread position: | 61-339 |
| Cow position: | chr24:6262003-6262292 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 78, 9 |
| Conread position: | 96-362 |
| Cow position: | chr24:39898260-39897983 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 42, 211 |
| Conread position: | 1-366 |
| Cow position: | chr26:7171794-7172174 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 260 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 28, 41 |
| Conread position: | 62-373 |
| Cow position: | chr27:951990-951666 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 11, 86 |
| Conread position: | 84-373 |
| Cow position: | chr27:1163257-1162955 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 40, 49 |
| Conread position: | 177-371 |
| Cow position: | chr27:11693749-11693551 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 47, 15 |
| Conread position: | 1-373 |
| Cow position: | chr28:23112117-23111714 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 274 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 38, 75 |
| Conread position: | 44-373 |
| Cow position: | chr28:25945557-25945890 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 8, 21 |
| Conread position: | 62-373 |
| Cow position: | chr29:3702225-3701903 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 16, 62 |
| Conread position: | 3-372 |
| Cow position: | chr3:43412404-43412035 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 58 |
| Conread position: | 72-373 |
| Cow position: | chr3:69419818-69420140 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 59, 111 |
| Conread position: | 129-354 |
| Cow position: | chr3:13151685-13151449 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 225-373 |
| Cow position: | chr3:69207222-69207375 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 261-373 |
| Cow position: | chr3:44254563-44254679 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 51-363 |
| Cow position: | chr5:3492482-3492808 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 76, 19 |
| Conread position: | 84-372 |
| Cow position: | chr5:11645801-11645499 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 43, 22 |
| Conread position: | 128-373 |
| Cow position: | chr5:5979371-5979131 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 38, 45 |
| Conread position: | 182-373 |
| Cow position: | chr5:53763761-53763957 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 46, 114 |
| Conread position: | 261-373 |
| Cow position: | chr5:27690144-27690259 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 93 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 1-371 |
| Cow position: | chr6:19144766-19145138 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 256 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 33, 62 |
| Conread position: | 1-373 |
| Cow position: | chr6:22804161-22804553 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 261 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 39, 66 |
| Conread position: | 73-372 |
| Cow position: | chr6:41695244-41694928 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 54, 98 |
| Conread position: | 95-373 |
| Cow position: | chr6:52188717-52189008 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 28, 83 |
| Conread position: | 3-319 |
| Cow position: | chr7:49785494-49785818 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 124, 39 |
| Conread position: | 47-330 |
| Cow position: | chr7:3480734-3480438 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 11, 153 |
| Conread position: | 72-373 |
| Cow position: | chr7:41499007-41498688 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 47, 79 |
| Conread position: | 85-371 |
| Cow position: | chr7:21848891-21849183 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 202 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 39, 94 |
| Conread position: | 62-366 |
| Cow position: | chr8:34877272-34876958 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 214 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 7, 105 |
| Conread position: | 1-327 |
| Cow position: | chr9:3197419-3197093 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 231 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 141, 49 |
| Conread position: | 1-207 |
| Cow position: | chrX:20734682-20734472 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 132, 64 |
| Conread position: | 1-335 |
| Cow position: | chrX:7693269-7693612 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 128, 33 |
| Conread position: | 3-373 |
| Cow position: | chrX:25330197-25329814 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 245 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 126, 62 |
| Conread position: | 23-366 |
| Cow position: | chrX:25301591-25301945 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 104, 7 |
| Conread position: | 72-327 |
| Cow position: | chrX:42219000-42218736 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 13, 104 |
| Conread position: | 239-371 |
| Cow position: | chrX:11448132-11448268 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 62, 0 |