Cow genome map

Conread name: Mixc-0036,f01

Conread position: 104-503
Cow position: chr1:65389834-65389429 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 0

Conread position: 107-483
Cow position: chr1:61703284-61703654 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 48

Conread position: 111-506
Cow position: chr1:66504993-66504597 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 22

Conread position: 143-514
Cow position: chr1:64698326-64697945 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 12

Conread position: 202-503
Cow position: chr1:31724427-31724719 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 217
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 51, 36

Conread position: 27-507
Cow position: chr10:1434510-1434023 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 170

Conread position: 68-517
Cow position: chr10:41385663-41386104 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 34

Conread position: 161-503
Cow position: chr10:21426061-21426408 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 147

Conread position: 22-274
Cow position: chr11:48293832-48293576 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 196
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 19, 86

Conread position: 29-507
Cow position: chr11:80471945-80472423 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 12

Conread position: 107-507
Cow position: chr11:39484214-39483814 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 14

Conread position: 129-507
Cow position: chr11:48740019-48740393 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 72

Conread position: 83-503
Cow position: chr12:11101489-11101065 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 19

Conread position: 104-507
Cow position: chr13:4934502-4934105 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 70

Conread position: 267-546
Cow position: chr13:24703567-24703843 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 207
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 104, 246

Conread position: 1-507
Cow position: chr14:1735530-1736057 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 9

Conread position: 24-270
Cow position: chr14:7722098-7721859 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 185
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 36, 24

Conread position: 27-495
Cow position: chr14:13009295-13009729 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 317
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 12, 78

Conread position: 83-503
Cow position: chr14:37227076-37226651 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 19

Conread position: 23-405
Cow position: chr15:4103797-4104178 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 97

Conread position: 83-507
Cow position: chr15:15649521-15649934 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 19

Conread position: 124-507
Cow position: chr15:22731919-22732304 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 36

Conread position: 208-502
Cow position: chr15:49299177-49298886 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 212
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 38, 65

Conread position: 287-507
Cow position: chr15:38426848-38426629 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 164
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 84, 31

Conread position: 3-507
Cow position: chr16:42132497-42132006 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 36

Conread position: 28-506
Cow position: chr16:15549451-15548990 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 25

Conread position: 27-492
Cow position: chr17:10270172-10270639 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 81

Conread position: 91-538
Cow position: chr17:5043482-5043929 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 11

Conread position: 110-503
Cow position: chr17:14242924-14242528 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 242

Conread position: 277-505
Cow position: chr17:42383162-42383386 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 169
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 97, 53

Conread position: 321-503
Cow position: chr17:28025190-28025378 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 135
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 41, 0

Conread position: 156-511
Cow position: chr18:24676432-24676796 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 248
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 6, 101

Conread position: 368-512
Cow position: chr18:44403866-44403720 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 79, 9

Conread position: 25-506
Cow position: chr19:24672085-24672573 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 83

Conread position: 100-503
Cow position: chr19:38558955-38559365 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 157

Conread position: 27-508
Cow position: chr2:78645324-78645807 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 82

Conread position: 70-348
Cow position: chr2:78518699-78518436 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 208
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 20, 34

Conread position: 83-487
Cow position: chr2:45917980-45918386 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 19

Conread position: 83-503
Cow position: chr2:21981964-21982389 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 19

Conread position: 79-507
Cow position: chr20:14930550-14930133 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 27

Conread position: 266-507
Cow position: chr20:20185864-20185622 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 183
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 104, 21

Conread position: 280-494
Cow position: chr20:15746116-15745914 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 156
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 50, 0

Conread position: 61-478
Cow position: chr21:20773285-20772872 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 45

Conread position: 79-507
Cow position: chr21:32203663-32203233 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 38

Conread position: 238-507
Cow position: chr21:2460087-2459819 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 184
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 15, 79

Conread position: 168-507
Cow position: chr22:14358536-14358866 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 246
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 8, 31

Conread position: 29-508
Cow position: chr23:11172374-11172861 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 10

Conread position: 67-512
Cow position: chr23:24517091-24516654 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 38

Conread position: 103-507
Cow position: chr23:30166126-30166527 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 268, 54

Conread position: 348-507
Cow position: chr23:35274857-35274698 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 23, 67

Conread position: 105-517
Cow position: chr24:22821004-22820605 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 284
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 90, 179

Conread position: 107-506
Cow position: chr24:33008417-33008821 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 117

Conread position: 53-510
Cow position: chr25:16871249-16871695 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 8

Conread position: 83-503
Cow position: chr25:20633792-20633373 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 19

Conread position: 197-532
Cow position: chr25:24799437-24799114 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 133

Conread position: 340-502
Cow position: chr25:9077133-9076972 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 122
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 31, 48

Conread position: 10-262
Cow position: chr26:19013228-19012969 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 99

Conread position: 22-503
Cow position: chr26:14487908-14488392 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 25

Conread position: 143-507
Cow position: chr27:25873816-25873456 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 34

Conread position: 24-262
Cow position: chr28:34009147-34008912 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 162
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 58, 80

Conread position: 83-505
Cow position: chr28:23620251-23619829 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 19

Conread position: 101-503
Cow position: chr28:1508147-1507739 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 0

Conread position: 102-503
Cow position: chr28:1214560-1214967 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 0

Conread position: 202-503
Cow position: chr29:15995242-15995548 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 224-510
Cow position: chr29:7331315-7331595 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 209
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 146, 20

Conread position: 340-506
Cow position: chr29:38618527-38618691 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 123
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 29, 38

Conread position: 27-506
Cow position: chr3:27090956-27091419 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 81

Conread position: 83-511
Cow position: chr3:74847998-74848421 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 19

Conread position: 87-507
Cow position: chr3:62912550-62912998 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 15

Conread position: 148-506
Cow position: chr3:48034165-48034518 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 239

Conread position: 202-503
Cow position: chr3:82809072-82808777 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 206
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 53, 84

Conread position: 10-503
Cow position: chr4:453793-453320 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 30

Conread position: 83-503
Cow position: chr4:31562253-31562676 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 19

Conread position: 159-507
Cow position: chr4:55796957-55796602 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 236
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 38, 48

Conread position: 254-505
Cow position: chr4:49990059-49990300 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 185
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 195, 52

Conread position: 284-507
Cow position: chr4:20789341-20789115 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 168
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 87, 47

Conread position: 307-512
Cow position: chr4:5914104-5913901 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 151
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 61, 92

Conread position: 3-467
Cow position: chr5:23889725-23890183 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 111

Conread position: 23-487
Cow position: chr5:56961696-56961232 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 321
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 17, 34

Conread position: 83-503
Cow position: chr5:14636500-14636925 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 19

Conread position: 90-503
Cow position: chr5:8178183-8177762 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 102

Conread position: 176-482
Cow position: chr5:12679597-12679906 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 141

Conread position: 29-200
Cow position: chr6:31270661-31270484 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 131
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 17, 75

Conread position: 89-482
Cow position: chr6:9733758-9734150 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 259
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 10, 19

Conread position: 104-506
Cow position: chr6:39331334-39331741 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 326

Conread position: 134-503
Cow position: chr6:1818633-1819007 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 24

Conread position: 158-512
Cow position: chr6:1735308-1734965 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 236
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 41, 118

Conread position: 3-507
Cow position: chr8:36855094-36855600 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 102

Conread position: 29-508
Cow position: chr8:4902455-4901973 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 83

Conread position: 59-507
Cow position: chr8:56481256-56481701 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 44

Conread position: 83-503
Cow position: chr8:25671785-25671366 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 19

Conread position: 83-503
Cow position: chr8:25773148-25773569 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 19

Conread position: 101-495
Cow position: chr8:34406906-34406510 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 272
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 94, 122

Conread position: 362-507
Cow position: chr8:38016186-38016331 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 109
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 83, 29

Conread position: 82-487
Cow position: chr9:2208522-2208931 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 20

Conread position: 226-506
Cow position: chr9:25452846-25453124 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 199
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 29, 105

Conread position: 2-512
Cow position: chrX:13654634-13654120 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 20

Conread position: 83-503
Cow position: chrX:29880223-29880649 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 0

Conread position: 91-306
Cow position: chrX:516016-515799 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 159
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 97, 0