Cow genome map

Conread name: Mixc-0040,h12

Conread position: 1-113
Cow position: chr10:55122872-55122759 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 95
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 40, 0

Conread position: 1-113
Cow position: chr10:59151799-59151912 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 92
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 1-116
Cow position: chr10:4109654-4109538 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 92
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 1-116
Cow position: chr10:13316004-13315888 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 91
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 1-116
Cow position: chr10:29349679-29349561 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 97
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 40, 0

Conread position: 1-116
Cow position: chr10:34700696-34700580 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 40, 0

Conread position: 1-117
Cow position: chr10:19895459-19895347 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 96
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 40, 60

Conread position: 1-117
Cow position: chr10:24831014-24831135 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 96
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 1-117
Cow position: chr10:37014699-37014582 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 97
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 40, 0

Conread position: 1-117
Cow position: chr10:50182987-50183095 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 96
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 38, 0

Conread position: 1-119
Cow position: chr10:35605115-35604996 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 96
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 40, 0

Conread position: 1-119
Cow position: chr10:67581350-67581231 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 96
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 40, 0

Conread position: 1-124
Cow position: chr10:24871230-24871106 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 95
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 1-124
Cow position: chr10:40420782-40420904 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 100
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 114, 81

Conread position: 1-127
Cow position: chr10:704930-705057 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 99
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 2-111
Cow position: chr10:2849413-2849304 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 87
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 2-116
Cow position: chr10:52069420-52069535 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 95
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 39, 0

Conread position: 2-125
Cow position: chr10:11221767-11221644 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 97
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 39, 85

Conread position: 3-108
Cow position: chr10:10026413-10026307 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 86
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 38, 0

Conread position: 3-116
Cow position: chr10:42745981-42745867 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 93
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 38, 0

Conread position: 3-117
Cow position: chr10:15318949-15318833 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 95
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 20, 0

Conread position: 3-117
Cow position: chr10:17568038-17568153 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 38, 49

Conread position: 3-118
Cow position: chr10:15293329-15293212 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 94
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 38, 0

Conread position: 3-119
Cow position: chr10:54477165-54477049 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 95
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 38, 30

Conread position: 5-118
Cow position: chr10:10751929-10752041 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 94
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 36, 53

Conread position: 6-119
Cow position: chr10:47725007-47724893 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 94
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 35, 0

Conread position: 21-108
Cow position: chr10:52125639-52125727 (view UCSC Genome Browser custom track)
Alignm length: 89
Alignm identity: 77
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 20, 0

Conread position: 1-105
Cow position: chr11:69415527-69415630 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 87
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 40, 60

Conread position: 1-108
Cow position: chr11:29786427-29786535 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 87
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 1-111
Cow position: chr11:53778688-53778577 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 93
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 42, 0

Conread position: 1-112
Cow position: chr11:26144024-26144136 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 90
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 1-113
Cow position: chr11:41985974-41986087 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 94
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 38, 0

Conread position: 1-113
Cow position: chr11:62155710-62155597 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 92
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 34, 0

Conread position: 1-116
Cow position: chr11:8988159-8988274 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 93
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 1-118
Cow position: chr11:16906979-16907095 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 40, 61

Conread position: 1-118
Cow position: chr11:34106598-34106716 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 98
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 40, 0

Conread position: 1-118
Cow position: chr11:61958672-61958791 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 98
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 40, 0

Conread position: 1-119
Cow position: chr11:13500087-13499970 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 102
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 40, 82

Conread position: 1-123
Cow position: chr11:33527124-33526999 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 102
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 40, 0

Conread position: 1-123
Cow position: chr11:49153020-49152898 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 96
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 40, 52

Conread position: 1-124
Cow position: chr11:63482358-63482478 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 98
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 40, 60

Conread position: 1-124
Cow position: chr11:77013852-77013732 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 98
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 40, 60

Conread position: 1-125
Cow position: chr11:52983747-52983622 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 100
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 40, 0

Conread position: 2-109
Cow position: chr11:58938674-58938782 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 90
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 39, 0

Conread position: 2-113
Cow position: chr11:15373910-15373797 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 91
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 39, 0

Conread position: 2-116
Cow position: chr11:56654626-56654511 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 93
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 39, 0

Conread position: 2-118
Cow position: chr11:6233809-6233926 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 92
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 39, 0

Conread position: 2-118
Cow position: chr11:35926838-35926951 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 96
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 39, 59

Conread position: 3-108
Cow position: chr11:18608168-18608274 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 87
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 38, 0

Conread position: 3-118
Cow position: chr11:84385569-84385683 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 96
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 38, 72

Conread position: 3-119
Cow position: chr11:18587526-18587643 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 93
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 38, 0

Conread position: 3-124
Cow position: chr11:51729356-51729234 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 94
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 38, 0

Conread position: 4-120
Cow position: chr11:41175880-41175998 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 38, 0

Conread position: 4-125
Cow position: chr11:70273375-70273252 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 98
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 37, 0

Conread position: 5-148
Cow position: chr11:67912084-67912230 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 114
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 105, 143

Conread position: 9-116
Cow position: chr11:62889830-62889938 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 87
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 32, 0

Conread position: 10-148
Cow position: chr11:84977296-84977436 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 108
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 31, 121

Conread position: 13-125
Cow position: chr11:71168530-71168644 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 91
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 1-108
Cow position: chr12:17774845-17774737 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 87
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 1-110
Cow position: chr12:29057440-29057330 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 88
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 1-116
Cow position: chr12:11587825-11587709 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 95
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 40, 0

Conread position: 1-116
Cow position: chr12:33976250-33976134 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 91
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 1-116
Cow position: chr12:45002016-45002132 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 92
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 1-117
Cow position: chr12:6210107-6210224 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 95
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 13, 9

Conread position: 1-117
Cow position: chr12:42967046-42966934 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 97
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 40, 60

Conread position: 1-118
Cow position: chr12:45167968-45168086 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 97
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 40, 0

Conread position: 1-119
Cow position: chr12:9914840-9914721 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 94
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 1-119
Cow position: chr12:25452396-25452515 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 95
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 41, 0

Conread position: 1-119
Cow position: chr12:42181078-42181197 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 96
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 42, 0

Conread position: 1-122
Cow position: chr12:40157974-40158093 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 42, 32

Conread position: 1-124
Cow position: chr12:4135128-4135004 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 99
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 40, 0

Conread position: 2-108
Cow position: chr12:43691366-43691473 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 86
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 39, 0

Conread position: 2-118
Cow position: chr12:23916892-23916778 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 98
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 40, 59

Conread position: 3-107
Cow position: chr12:7920291-7920186 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 90
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 38, 0

Conread position: 3-112
Cow position: chr12:3197317-3197208 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 89
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 38, 47

Conread position: 3-113
Cow position: chr12:15163188-15163078 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 90
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 38, 67

Conread position: 3-116
Cow position: chr12:18103563-18103674 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 92
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 40, 76

Conread position: 3-124
Cow position: chr12:18963879-18964001 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 96
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 38, 0

Conread position: 5-117
Cow position: chr12:6241366-6241253 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 91
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 36, 0

Conread position: 9-115
Cow position: chr12:3675484-3675591 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 86
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 32, 0

Conread position: 11-118
Cow position: chr12:10491312-10491205 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 87
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 1-107
Cow position: chr13:8652546-8652439 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 90
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 40, 0

Conread position: 1-113
Cow position: chr13:32017616-32017502 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 94
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 40, 0

Conread position: 1-113
Cow position: chr13:44003597-44003708 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 93
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 40, 86

Conread position: 1-116
Cow position: chr13:11643835-11643951 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 40, 0

Conread position: 1-116
Cow position: chr13:36771524-36771412 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 98
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 40, 11

Conread position: 1-117
Cow position: chr13:6183524-6183407 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 92
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 1-117
Cow position: chr13:7076153-7076268 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 93
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 40, 82

Conread position: 1-117
Cow position: chr13:37593051-37592933 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 98
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 30, 0

Conread position: 1-118
Cow position: chr13:6974057-6974175 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 99
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 40, 0

Conread position: 1-118
Cow position: chr13:12925674-12925790 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 97
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 8, 61

Conread position: 1-118
Cow position: chr13:14771348-14771466 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 1-118
Cow position: chr13:19183764-19183882 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 93
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 1-118
Cow position: chr13:20650091-20649972 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 96
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 33, 0

Conread position: 1-118
Cow position: chr13:24110376-24110494 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 96
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 40, 0

Conread position: 1-118
Cow position: chr13:39367855-39367977 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 1-118
Cow position: chr13:62008003-62008121 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 99
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 40, 0

Conread position: 1-119
Cow position: chr13:37381697-37381816 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 93
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 1-120
Cow position: chr13:55765284-55765161 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 103
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 37, 0

Conread position: 1-124
Cow position: chr13:17837846-17837970 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 97
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 1-136
Cow position: chr13:20519957-20520092 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 108
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 40, 115

Conread position: 2-108
Cow position: chr13:43919364-43919257 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 88
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 39, 0

Conread position: 2-112
Cow position: chr13:43829141-43829252 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 92
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 39, 0

Conread position: 2-117
Cow position: chr13:28552485-28552601 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 41, 0

Conread position: 2-118
Cow position: chr13:8524721-8524604 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 96
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 39, 0

Conread position: 2-118
Cow position: chr13:45352928-45353046 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 39, 0

Conread position: 2-119
Cow position: chr13:827142-827258 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 95
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 39, 59

Conread position: 2-122
Cow position: chr13:18516943-18517062 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 98
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 39, 29

Conread position: 2-148
Cow position: chr13:15996931-15997075 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 114
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 39, 124

Conread position: 3-113
Cow position: chr13:25926688-25926799 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 93
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 38, 0

Conread position: 3-116
Cow position: chr13:1043072-1042957 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 93
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 7, 0

Conread position: 3-117
Cow position: chr13:18166630-18166745 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 91
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 38, 0

Conread position: 3-118
Cow position: chr13:42640284-42640396 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 38, 82

Conread position: 3-119
Cow position: chr13:17563637-17563755 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 98
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 38, 0

Conread position: 3-119
Cow position: chr13:40491113-40491230 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 98
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 38, 0

Conread position: 3-123
Cow position: chr13:8609649-8609528 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 96
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 54, 0

Conread position: 3-130
Cow position: chr13:18999433-18999561 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 100
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 38, 0

Conread position: 5-111
Cow position: chr13:15143942-15143836 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 88
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 36, 57

Conread position: 1-112
Cow position: chr14:6541772-6541659 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 92
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 9, 0

Conread position: 1-113
Cow position: chr14:3943597-3943484 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 95
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 42, 0

Conread position: 1-113
Cow position: chr14:25824648-25824761 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 90
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 1-113
Cow position: chr14:46997992-46998105 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 91
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 1-118
Cow position: chr14:19129459-19129577 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 101
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 40, 0

Conread position: 1-118
Cow position: chr14:37883963-37883845 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 93
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 1-123
Cow position: chr14:27275116-27275237 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 40, 49

Conread position: 1-125
Cow position: chr14:35381545-35381668 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 97
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 40, 11

Conread position: 2-117
Cow position: chr14:46061896-46062012 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 97
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 39, 0

Conread position: 2-118
Cow position: chr14:33247475-33247358 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 92
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 39, 0

Conread position: 2-118
Cow position: chr14:34399844-34399727 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 94
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 39, 0

Conread position: 2-119
Cow position: chr14:33309549-33309431 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 39, 0

Conread position: 2-123
Cow position: chr14:1868429-1868307 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 95
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 39, 0

Conread position: 2-135
Cow position: chr14:34449017-34448880 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 107
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 39, 0

Conread position: 2-148
Cow position: chr14:40754293-40754142 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 122
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 39, 0

Conread position: 3-106
Cow position: chr14:22941773-22941669 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 86
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 38, 0

Conread position: 3-113
Cow position: chr14:33830257-33830367 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 91
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 38, 56

Conread position: 3-116
Cow position: chr14:38144152-38144038 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 92
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 38, 0

Conread position: 3-120
Cow position: chr14:28924123-28924241 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 96
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 38, 0

Conread position: 22-118
Cow position: chr14:18717247-18717344 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 82
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 1-113
Cow position: chr15:6037454-6037342 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 91
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 40, 52

Conread position: 1-113
Cow position: chr15:21941845-21941733 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 90
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 1-113
Cow position: chr15:31857591-31857704 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 91
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 1-118
Cow position: chr15:24031200-24031318 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 92
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 42, 0

Conread position: 1-118
Cow position: chr15:36388291-36388409 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 100
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 40, 0

Conread position: 1-118
Cow position: chr15:36793494-36793376 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 102
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 40, 0

Conread position: 1-118
Cow position: chr15:39621338-39621456 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 1-119
Cow position: chr15:4295763-4295882 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 92
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 1-119
Cow position: chr15:14176499-14176380 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 97
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 40, 0

Conread position: 1-119
Cow position: chr15:38845901-38846020 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 96
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 40, 0

Conread position: 1-119
Cow position: chr15:39405744-39405862 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 100
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 45, 41

Conread position: 1-120
Cow position: chr15:43114720-43114607 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 99
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 87, 38

Conread position: 1-123
Cow position: chr15:4418400-4418277 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 96
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 1-123
Cow position: chr15:23768257-23768134 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 99
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 40, 0

Conread position: 1-124
Cow position: chr15:23719483-23719357 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 101
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 40, 0

Conread position: 1-125
Cow position: chr15:31928896-31928771 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 98
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 1-136
Cow position: chr15:39520168-39520306 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 104
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 42, 0

Conread position: 2-118
Cow position: chr15:44280103-44280220 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 91
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 37, 0

Conread position: 2-124
Cow position: chr15:35945530-35945653 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 98
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 39, 0

Conread position: 3-116
Cow position: chr15:41000068-40999955 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 93
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 38, 58

Conread position: 3-117
Cow position: chr15:5158376-5158491 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 93
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 38, 0

Conread position: 3-117
Cow position: chr15:21893781-21893895 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 96
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 38, 55

Conread position: 3-118
Cow position: chr15:795019-794903 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 92
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 38, 0

Conread position: 3-119
Cow position: chr15:50322596-50322713 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 96
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 38, 0

Conread position: 3-122
Cow position: chr15:21821922-21821802 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 97
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 38, 0

Conread position: 3-135
Cow position: chr15:31495221-31495088 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 107
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 38, 97

Conread position: 4-120
Cow position: chr15:225801-225684 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 96
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 37, 0

Conread position: 5-113
Cow position: chr15:19553920-19553808 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 91
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 36, 0

Conread position: 5-128
Cow position: chr15:19186609-19186488 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 99
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 105, 34

Conread position: 10-122
Cow position: chr15:44658369-44658481 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 90
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 31, 73

Conread position: 13-108
Cow position: chr15:18776739-18776643 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 82
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 28, 0

Conread position: 1-108
Cow position: chr16:820340-820232 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 87
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 1-108
Cow position: chr16:48448812-48448705 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 89
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 40, 15

Conread position: 1-112
Cow position: chr16:52889321-52889433 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 93
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 109, 0

Conread position: 1-113
Cow position: chr16:24403339-24403451 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 92
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 40, 70

Conread position: 1-116
Cow position: chr16:2223307-2223423 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 95
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 40, 0

Conread position: 1-116
Cow position: chr16:11774958-11775078 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 95
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 38, 0

Conread position: 1-117
Cow position: chr16:48545911-48545794 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 94
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 1-118
Cow position: chr16:12501071-12501188 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 95
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 1-118
Cow position: chr16:15960200-15960318 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 97
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 40, 0

Conread position: 1-118
Cow position: chr16:23955742-23955860 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 95
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 40, 0

Conread position: 1-118
Cow position: chr16:26372861-26372977 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 40, 30

Conread position: 1-118
Cow position: chr16:33530499-33530381 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 92
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 1-118
Cow position: chr16:39165329-39165212 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 40, 84

Conread position: 1-119
Cow position: chr16:42340286-42340167 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 92
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 40, 0

Conread position: 1-123
Cow position: chr16:56082275-56082399 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 100
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 41, 0

Conread position: 1-124
Cow position: chr16:591721-591845 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 97
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 40, 55

Conread position: 1-129
Cow position: chr16:18048065-18048194 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 100
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 40, 55

Conread position: 2-124
Cow position: chr16:4399824-4399701 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 94
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 41, 0

Conread position: 3-107
Cow position: chr16:50286600-50286496 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 86
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 38, 69

Conread position: 3-116
Cow position: chr16:49169293-49169407 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 95
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 38, 0

Conread position: 3-118
Cow position: chr16:6310613-6310729 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 91
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 38, 0

Conread position: 3-118
Cow position: chr16:7665725-7665609 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 38, 0

Conread position: 3-118
Cow position: chr16:37452526-37452642 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 91
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 38, 0

Conread position: 3-118
Cow position: chr16:44428971-44428855 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 39, 0

Conread position: 3-119
Cow position: chr16:9578404-9578520 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 93
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 38, 28

Conread position: 3-123
Cow position: chr16:13611366-13611486 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 95
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 38, 105

Conread position: 4-118
Cow position: chr16:39646631-39646516 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 37, 14

Conread position: 4-119
Cow position: chr16:3246118-3246234 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 92
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 37, 0

Conread position: 5-113
Cow position: chr16:15370772-15370661 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 91
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 36, 0

Conread position: 9-118
Cow position: chr16:42433029-42433139 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 93
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 32, 0

Conread position: 11-119
Cow position: chr16:9500602-9500493 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 90
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 30, 0

Conread position: 24-121
Cow position: chr16:55968509-55968411 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 82
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 17, 0

Conread position: 1-110
Cow position: chr17:37430375-37430485 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 92
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 40, 0

Conread position: 1-113
Cow position: chr17:15684640-15684526 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 95
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 40, 0

Conread position: 1-116
Cow position: chr17:22056898-22057014 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 91
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 1-117
Cow position: chr17:11831985-11832102 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 92
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 1-117
Cow position: chr17:26072631-26072748 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 98
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 40, 0

Conread position: 1-118
Cow position: chr17:17410423-17410305 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 93
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 1-118
Cow position: chr17:23798411-23798293 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 97
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 40, 0

Conread position: 1-118
Cow position: chr17:27202916-27203034 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 97
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 40, 0

Conread position: 1-119
Cow position: chr17:34836301-34836182 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 95
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 1-122
Cow position: chr17:20848652-20848531 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 99
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 40, 55

Conread position: 1-122
Cow position: chr17:36275463-36275342 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 95
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 40, 112

Conread position: 1-123
Cow position: chr17:7142991-7142868 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 104
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 40, 0

Conread position: 1-123
Cow position: chr17:21959558-21959681 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 101
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 40, 0

Conread position: 1-123
Cow position: chr17:25126480-25126357 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 101
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 40, 0

Conread position: 1-125
Cow position: chr17:8986474-8986602 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 100
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 11, 0

Conread position: 1-136
Cow position: chr17:12288925-12288787 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 105
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 38, 0

Conread position: 1-136
Cow position: chr17:12342351-12342488 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 106
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 40, 0

Conread position: 2-113
Cow position: chr17:9935677-9935790 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 96
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 24, 0

Conread position: 2-118
Cow position: chr17:2275599-2275482 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 95
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 39, 0

Conread position: 2-118
Cow position: chr17:40288871-40288988 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 94
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 39, 0

Conread position: 2-118
Cow position: chr17:40355387-40355270 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 95
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 39, 0

Conread position: 2-119
Cow position: chr17:4833399-4833517 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 92
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 39, 0

Conread position: 3-113
Cow position: chr17:22246117-22246006 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 91
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 38, 0

Conread position: 3-117
Cow position: chr17:31856801-31856686 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 94
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 38, 0

Conread position: 3-118
Cow position: chr17:14003953-14003835 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 39, 0

Conread position: 4-124
Cow position: chr17:40741779-40741654 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 102
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 37, 0

Conread position: 5-124
Cow position: chr17:20904973-20905094 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 95
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 36, 0

Conread position: 9-123
Cow position: chr17:32265368-32265483 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 92
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 32, 0

Conread position: 16-120
Cow position: chr17:18860608-18860712 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 89
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 25, 7

Conread position: 1-108
Cow position: chr18:5632324-5632216 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 87
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 1-111
Cow position: chr18:47565880-47565772 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 94
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 40, 51

Conread position: 1-113
Cow position: chr18:4757514-4757627 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 92
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 1-113
Cow position: chr18:37023494-37023607 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 89
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 40, 0

Conread position: 1-116
Cow position: chr18:22214544-22214428 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 1-116
Cow position: chr18:52251801-52251917 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 96
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 40, 0

Conread position: 1-117
Cow position: chr18:4182132-4182248 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 93
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 40, 11

Conread position: 1-117
Cow position: chr18:43555468-43555585 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 91
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 40, 0

Conread position: 1-118
Cow position: chr18:4757977-4758095 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 99
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 40, 54

Conread position: 1-118
Cow position: chr18:24342899-24342780 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 97
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 40, 0

Conread position: 1-119
Cow position: chr18:22170674-22170554 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 98
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 40, 0

Conread position: 1-120
Cow position: chr18:16997310-16997189 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 100
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 40, 0

Conread position: 1-125
Cow position: chr18:1607305-1607184 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 98
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 119, 24

Conread position: 1-140
Cow position: chr18:12584783-12584923 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 105
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 1-146
Cow position: chr18:21708071-21708218 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 109
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 2-116
Cow position: chr18:56159516-56159402 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 94
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 39, 22

Conread position: 2-119
Cow position: chr18:7109185-7109067 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 39, 0

Conread position: 2-120
Cow position: chr18:21266561-21266441 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 96
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 39, 0

Conread position: 2-122
Cow position: chr18:6399581-6399698 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 96
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 39, 59

Conread position: 3-107
Cow position: chr18:52003584-52003481 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 85
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 11, 0

Conread position: 3-113
Cow position: chr18:19273042-19273153 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 88
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 38, 0

Conread position: 3-113
Cow position: chr18:46647106-46647213 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 93
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 36, 55

Conread position: 3-117
Cow position: chr18:51643311-51643426 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 97
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 38, 0

Conread position: 12-111
Cow position: chr18:27388630-27388529 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 84
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 29, 0

Conread position: 13-111
Cow position: chr18:15025716-15025618 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 83
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 28, 39

Conread position: 21-116
Cow position: chr18:47417038-47416942 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 83
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 20, 0

Conread position: 1-112
Cow position: chr19:4800820-4800708 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 91
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 1-113
Cow position: chr19:268432-268319 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 89
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 40, 0

Conread position: 1-113
Cow position: chr19:10242657-10242548 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 94
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 40, 55

Conread position: 1-117
Cow position: chr19:10081153-10081036 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 91
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 40, 0

Conread position: 1-117
Cow position: chr19:11424239-11424354 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 1-118
Cow position: chr19:729669-729782 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 95
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 40, 30

Conread position: 1-118
Cow position: chr19:22798999-22799117 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 97
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 40, 86

Conread position: 1-118
Cow position: chr19:34166445-34166331 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 102
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 40, 56

Conread position: 1-118
Cow position: chr19:34819108-34819228 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 100
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 40, 0

Conread position: 1-118
Cow position: chr19:54943047-54942927 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 98
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 40, 0

Conread position: 1-119
Cow position: chr19:21817041-21816926 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 99
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 40, 55

Conread position: 1-119
Cow position: chr19:46713715-46713596 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 93
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 1-119
Cow position: chr19:52750680-52750799 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 94
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 1-121
Cow position: chr19:21176663-21176784 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 96
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 1-123
Cow position: chr19:39254367-39254490 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 95
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 38, 0

Conread position: 1-131
Cow position: chr19:26167834-26167965 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 103
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 40, 0

Conread position: 1-132
Cow position: chr19:11443069-11442935 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 105
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 40, 0

Conread position: 2-118
Cow position: chr19:17354935-17354818 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 93
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 41, 0

Conread position: 3-105
Cow position: chr19:6854203-6854306 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 84
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 38, 0

Conread position: 3-112
Cow position: chr19:23304414-23304522 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 90
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 38, 80

Conread position: 3-118
Cow position: chr19:31595377-31595261 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 38, 0

Conread position: 3-120
Cow position: chr19:4328977-4329091 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 97
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 38, 58

Conread position: 4-108
Cow position: chr19:22449851-22449956 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 85
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 37, 0

Conread position: 4-117
Cow position: chr19:30007267-30007153 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 95
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 37, 0

Conread position: 5-117
Cow position: chr19:47859241-47859355 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 94
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 36, 0

Conread position: 5-119
Cow position: chr19:42236102-42235987 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 94
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 36, 0

Conread position: 13-117
Cow position: chr19:7543480-7543375 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 85
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 28, 0

Conread position: 1-107
Cow position: chr2:13013180-13013073 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 89
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 1-108
Cow position: chr2:46014856-46014748 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 91
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 40, 0

Conread position: 1-111
Cow position: chr2:45478507-45478618 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 89
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 1-111
Cow position: chr2:59396964-59397074 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 92
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 1-112
Cow position: chr2:39095446-39095334 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 91
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 1-112
Cow position: chr2:42183462-42183350 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 94
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 40, 0

Conread position: 1-113
Cow position: chr2:15348483-15348370 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 90
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 1-113
Cow position: chr2:26851253-26851142 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 89
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 66, 0

Conread position: 1-117
Cow position: chr2:70945494-70945377 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 96
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 40, 0

Conread position: 1-118
Cow position: chr2:14734195-14734077 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 92
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 1-118
Cow position: chr2:19211967-19212083 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 99
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 40, 8

Conread position: 1-118
Cow position: chr2:64773475-64773357 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 97
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 40, 0

Conread position: 1-119
Cow position: chr2:41007449-41007570 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 96
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 16, 0

Conread position: 1-123
Cow position: chr2:56846837-56846714 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 98
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 40, 68

Conread position: 1-131
Cow position: chr2:17940198-17940328 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 107
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 40, 52

Conread position: 1-131
Cow position: chr2:38837427-38837557 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 103
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 40, 126

Conread position: 1-133
Cow position: chr2:6039103-6038971 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 105
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 40, 127

Conread position: 1-137
Cow position: chr2:43990862-43990721 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 36, 0

Conread position: 2-113
Cow position: chr2:17409918-17410030 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 91
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 39, 0

Conread position: 2-132
Cow position: chr2:42970198-42970073 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 102
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 35, 0

Conread position: 3-112
Cow position: chr2:5999035-5998925 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 88
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 38, 0

Conread position: 3-112
Cow position: chr2:63718324-63718434 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 88
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 38, 0

Conread position: 3-113
Cow position: chr2:68870778-68870671 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 91
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 38, 58

Conread position: 3-116
Cow position: chr2:28303407-28303293 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 92
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 38, 0

Conread position: 3-117
Cow position: chr2:84970625-84970741 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 38, 0

Conread position: 3-119
Cow position: chr2:40728438-40728321 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 94
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 38, 0

Conread position: 13-113
Cow position: chr2:57802411-57802512 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 84
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 21-117
Cow position: chr2:12988661-12988564 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 82
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 20, 0

Conread position: 1-112
Cow position: chr20:37919238-37919350 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 91
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 1-113
Cow position: chr20:5365058-5364949 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 92
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 40, 60

Conread position: 1-113
Cow position: chr20:16492205-16492091 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 93
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 1-118
Cow position: chr20:3141706-3141588 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 1-118
Cow position: chr20:4945122-4945237 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 94
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 1-118
Cow position: chr20:10772337-10772220 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 93
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 1-118
Cow position: chr20:11135621-11135747 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 101
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 26, 0

Conread position: 1-118
Cow position: chr20:20967453-20967336 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 105
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 40, 112

Conread position: 1-119
Cow position: chr20:12126172-12126291 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 93
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 1-121
Cow position: chr20:14759533-14759654 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 95
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 1-122
Cow position: chr20:16548146-16548269 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 96
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 38, 0

Conread position: 1-131
Cow position: chr20:354769-354896 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 103
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 40, 57

Conread position: 1-131
Cow position: chr20:40158032-40157901 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 98
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 2-118
Cow position: chr20:12995875-12995991 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 92
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 39, 29

Conread position: 2-118
Cow position: chr20:23506339-23506456 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 94
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 39, 0

Conread position: 3-120
Cow position: chr20:5703602-5703483 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 99
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 29, 0

Conread position: 13-112
Cow position: chr20:16715512-16715411 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 84
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 1-102
Cow position: chr21:37928802-37928700 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 87
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 40, 0

Conread position: 1-113
Cow position: chr21:13164012-13163899 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 95
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 41, 0

Conread position: 1-113
Cow position: chr21:20160829-20160716 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 94
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 40, 0

Conread position: 1-116
Cow position: chr21:13365496-13365380 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 93
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 5, 68

Conread position: 1-118
Cow position: chr21:47193-47075 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 96
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 40, 0

Conread position: 1-118
Cow position: chr21:868771-868889 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 93
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 1-118
Cow position: chr21:8231525-8231642 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 40, 30

Conread position: 1-118
Cow position: chr21:28244623-28244506 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 99
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 40, 79

Conread position: 1-118
Cow position: chr21:31159550-31159437 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 96
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 59, 0

Conread position: 1-118
Cow position: chr21:37706262-37706380 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 96
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 40, 0

Conread position: 1-119
Cow position: chr21:27863360-27863479 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 93
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 42, 0

Conread position: 1-119
Cow position: chr21:42209476-42209595 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 92
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 1-119
Cow position: chr21:45971021-45971138 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 97
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 40, 55

Conread position: 1-131
Cow position: chr21:7377773-7377906 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 109
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 40, 0

Conread position: 1-142
Cow position: chr21:28924262-28924121 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 108
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 40, 133

Conread position: 1-144
Cow position: chr21:396020-395877 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 40, 67

Conread position: 1-144
Cow position: chr21:40266274-40266131 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 114
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 40, 60

Conread position: 2-107
Cow position: chr21:15976784-15976679 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 88
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 39, 24

Conread position: 2-113
Cow position: chr21:10264185-10264073 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 91
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 39, 0

Conread position: 2-118
Cow position: chr21:41597963-41597846 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 100
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 39, 0

Conread position: 2-119
Cow position: chr21:17642833-17642950 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 93
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 3-108
Cow position: chr21:10538104-10538210 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 89
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 38, 0

Conread position: 3-108
Cow position: chr21:35647677-35647783 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 87
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 38, 0

Conread position: 3-113
Cow position: chr21:7584001-7583890 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 88
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 38, 0

Conread position: 3-113
Cow position: chr21:15584268-15584379 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 93
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 38, 0

Conread position: 3-116
Cow position: chr21:713094-712979 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 95
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 38, 0

Conread position: 3-118
Cow position: chr21:9416402-9416285 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 94
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 38, 0

Conread position: 10-119
Cow position: chr21:36789939-36789829 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 90
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 31, 0

Conread position: 13-123
Cow position: chr21:4281734-4281845 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 89
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 28, 0

Conread position: 1-108
Cow position: chr22:28937850-28937954 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 89
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 34, 0

Conread position: 1-113
Cow position: chr22:12749815-12749928 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 91
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 1-113
Cow position: chr22:24802614-24802727 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 89
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 1-113
Cow position: chr22:25254258-25254145 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 90
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 1-113
Cow position: chr22:26339840-26339727 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 91
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 1-113
Cow position: chr22:29842618-29842731 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 95
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 40, 0

Conread position: 1-116
Cow position: chr22:16724601-16724717 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 96
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 40, 0

Conread position: 1-117
Cow position: chr22:7832268-7832385 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 94
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 1-117
Cow position: chr22:10553599-10553716 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 100
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 40, 0

Conread position: 1-117
Cow position: chr22:18926442-18926325 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 92
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 1-118
Cow position: chr22:2502911-2502794 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 96
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 42, 55

Conread position: 1-118
Cow position: chr22:11130956-11130838 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 96
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 40, 0

Conread position: 1-118
Cow position: chr22:30643048-30643166 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 96
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 40, 0

Conread position: 1-119
Cow position: chr22:15737320-15737201 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 99
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 40, 0

Conread position: 1-119
Cow position: chr22:23398318-23398437 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 102
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 40, 0

Conread position: 1-119
Cow position: chr22:28728595-28728712 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 97
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 40, 74

Conread position: 1-124
Cow position: chr22:4156731-4156857 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 105
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 40, 0

Conread position: 1-135
Cow position: chr22:6096931-6097063 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 108
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 8, 14

Conread position: 1-148
Cow position: chr22:32698846-32698701 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 111
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 42, 60

Conread position: 2-108
Cow position: chr22:10752457-10752564 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 88
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 39, 0

Conread position: 2-119
Cow position: chr22:1911750-1911632 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 96
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 39, 0

Conread position: 2-120
Cow position: chr22:16044331-16044450 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 105
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 39, 0

Conread position: 3-113
Cow position: chr22:12967985-12968096 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 88
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 38, 0

Conread position: 3-117
Cow position: chr22:2627664-2627545 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 96
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 38, 0

Conread position: 3-118
Cow position: chr22:8840689-8840572 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 94
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 38, 0

Conread position: 3-119
Cow position: chr22:23372780-23372897 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 94
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 38, 0

Conread position: 3-119
Cow position: chr22:44180677-44180560 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 98
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 38, 0

Conread position: 3-120
Cow position: chr22:9372605-9372485 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 103
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 38, 0

Conread position: 3-123
Cow position: chr22:12678338-12678459 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 96
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 38, 0

Conread position: 3-124
Cow position: chr22:15025026-15025148 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 103
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 38, 0

Conread position: 3-124
Cow position: chr22:25943559-25943436 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 100
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 38, 0

Conread position: 4-113
Cow position: chr22:24223152-24223043 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 89
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 37, 17

Conread position: 4-118
Cow position: chr22:34712809-34712694 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 93
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 37, 0

Conread position: 4-119
Cow position: chr22:23176358-23176474 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 91
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 37, 0

Conread position: 8-123
Cow position: chr22:12829530-12829648 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 99
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 33, 111

Conread position: 1-103
Cow position: chr23:5686530-5686633 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 86
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 38, 0

Conread position: 1-108
Cow position: chr23:41348532-41348640 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 89
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 1-111
Cow position: chr23:11129325-11129214 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 91
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 1-111
Cow position: chr23:14569409-14569520 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 94
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 40, 0

Conread position: 1-117
Cow position: chr23:4972857-4972741 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 95
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 40, 46

Conread position: 1-118
Cow position: chr23:187270-187151 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 96
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 1-118
Cow position: chr23:35247459-35247341 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 99
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 40, 0

Conread position: 1-119
Cow position: chr23:33570226-33570107 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 93
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 1-119
Cow position: chr23:38455087-38455206 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 98
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 40, 0

Conread position: 1-123
Cow position: chr23:13599432-13599311 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 98
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 40, 57

Conread position: 1-123
Cow position: chr23:16699950-16700073 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 1-124
Cow position: chr23:3262406-3262529 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 96
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 40, 60

Conread position: 1-131
Cow position: chr23:18402198-18402330 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 40, 0

Conread position: 2-109
Cow position: chr23:18739373-18739482 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 89
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 41, 0

Conread position: 2-117
Cow position: chr23:5436552-5436668 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 41, 0

Conread position: 2-117
Cow position: chr23:23409823-23409708 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 97
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 39, 45

Conread position: 2-136
Cow position: chr23:57071-57207 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 108
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 25, 113

Conread position: 2-148
Cow position: chr23:39780845-39780698 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 112
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 39, 133

Conread position: 3-108
Cow position: chr23:4003736-4003628 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 90
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 38, 0

Conread position: 3-118
Cow position: chr23:36309510-36309396 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 38, 84

Conread position: 3-136
Cow position: chr23:25371916-25371782 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 106
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 38, 0

Conread position: 3-137
Cow position: chr23:12334299-12334165 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 100
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 3-143
Cow position: chr23:3234692-3234832 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 112
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 38, 113

Conread position: 5-118
Cow position: chr23:16582822-16582936 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 91
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 36, 0

Conread position: 7-118
Cow position: chr23:4726879-4726768 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 95
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 32, 53

Conread position: 1-108
Cow position: chr24:30483876-30483991 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 95
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 32, 0

Conread position: 1-108
Cow position: chr24:34465441-34465549 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 88
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 1-111
Cow position: chr24:27906504-27906391 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 96
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 38, 0

Conread position: 1-111
Cow position: chr24:28690749-28690639 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 92
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 40, 51

Conread position: 1-116
Cow position: chr24:34556099-34555985 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 40, 9

Conread position: 1-117
Cow position: chr24:20801281-20801398 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 92
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 1-118
Cow position: chr24:7046685-7046802 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 40, 56

Conread position: 1-118
Cow position: chr24:18741507-18741625 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 94
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 40, 55

Conread position: 1-119
Cow position: chr24:21895114-21894996 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 1-119
Cow position: chr24:34496186-34496065 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 96
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 1-124
Cow position: chr24:16895372-16895496 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 96
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 2-124
Cow position: chr24:11840251-11840128 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 100
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 41, 0

Conread position: 3-118
Cow position: chr24:17104507-17104624 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 93
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 3-118
Cow position: chr24:44987312-44987428 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 38, 0

Conread position: 3-123
Cow position: chr24:19535193-19535314 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 93
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 38, 0

Conread position: 4-108
Cow position: chr24:39910971-39911077 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 87
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 37, 0

Conread position: 17-108
Cow position: chr24:40824131-40824039 (view UCSC Genome Browser custom track)
Alignm length: 93
Alignm identity: 79
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 24, 0

Conread position: 1-113
Cow position: chr25:13503520-13503407 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 96
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 40, 0

Conread position: 1-117
Cow position: chr25:6474000-6474117 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 95
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 40, 0

Conread position: 1-117
Cow position: chr25:11956891-11956774 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 91
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 1-117
Cow position: chr25:36840483-36840366 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 96
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 40, 32

Conread position: 1-118
Cow position: chr25:1824010-1824128 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 93
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 1-118
Cow position: chr25:1838328-1838206 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 1-118
Cow position: chr25:30816976-30816858 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 101
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 40, 0

Conread position: 1-118
Cow position: chr25:31762521-31762639 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 1-118
Cow position: chr25:35109182-35109300 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 97
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 40, 0

Conread position: 1-124
Cow position: chr25:18905972-18905848 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 95
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 41, 0

Conread position: 1-124
Cow position: chr25:33555692-33555570 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 41, 0

Conread position: 2-116
Cow position: chr25:26051989-26051873 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 37, 0

Conread position: 2-116
Cow position: chr25:30656563-30656675 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 93
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 39, 54

Conread position: 3-113
Cow position: chr25:16921712-16921823 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 90
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 38, 0

Conread position: 3-115
Cow position: chr25:17474428-17474540 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 93
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 38, 69

Conread position: 3-118
Cow position: chr25:13272654-13272538 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 92
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 38, 0

Conread position: 3-123
Cow position: chr25:4009178-4009058 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 95
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 38, 113

Conread position: 1-113
Cow position: chr26:7224235-7224349 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 92
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 1-113
Cow position: chr26:12893322-12893434 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 96
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 40, 9

Conread position: 1-117
Cow position: chr26:29664051-29664170 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 94
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 38, 0

Conread position: 1-118
Cow position: chr26:32655502-32655621 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 95
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 40, 54

Conread position: 1-119
Cow position: chr26:4807660-4807545 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 97
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 40, 60

Conread position: 1-123
Cow position: chr26:10965488-10965611 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 94
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 1-124
Cow position: chr26:25074823-25074699 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 100
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 40, 56

Conread position: 3-119
Cow position: chr26:33253212-33253329 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 95
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 38, 49

Conread position: 3-120
Cow position: chr26:8699943-8700061 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 39, 0

Conread position: 5-113
Cow position: chr26:22602936-22603045 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 89
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 36, 0

Conread position: 9-118
Cow position: chr26:6794243-6794132 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 96
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 32, 0

Conread position: 1-108
Cow position: chr27:26490041-26489933 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 90
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 40, 0

Conread position: 1-108
Cow position: chr27:26920044-26919936 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 91
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 40, 0

Conread position: 1-113
Cow position: chr27:17918446-17918333 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 91
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 1-116
Cow position: chr27:30868873-30868757 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 95
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 40, 0

Conread position: 1-117
Cow position: chr27:27641144-27641028 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 99
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 1-119
Cow position: chr27:2592409-2592529 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 101
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 40, 0

Conread position: 3-111
Cow position: chr27:22454906-22454797 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 91
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 38, 0

Conread position: 3-120
Cow position: chr27:26112046-26111926 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 99
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 38, 0

Conread position: 3-123
Cow position: chr27:21975922-21976043 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 93
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 38, 0

Conread position: 5-118
Cow position: chr27:21453223-21453109 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 92
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 36, 0

Conread position: 9-113
Cow position: chr27:30354469-30354364 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 88
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 32, 0

Conread position: 13-124
Cow position: chr27:29319290-29319403 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 94
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 28, 0

Conread position: 1-107
Cow position: chr28:10163891-10163787 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 89
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 38, 75

Conread position: 1-111
Cow position: chr28:3143784-3143892 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 94
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 40, 55

Conread position: 1-113
Cow position: chr28:8149538-8149651 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 90
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 1-113
Cow position: chr28:23410229-23410344 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 93
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 1-118
Cow position: chr28:4881146-4881264 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 96
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 40, 0

Conread position: 1-118
Cow position: chr28:5630190-5630074 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 100
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 40, 19

Conread position: 1-118
Cow position: chr28:20313371-20313253 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 92
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 1-119
Cow position: chr28:11307424-11307543 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 94
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 1-119
Cow position: chr28:25677247-25677367 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 94
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 42, 0

Conread position: 1-119
Cow position: chr28:26982644-26982765 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 95
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 1-119
Cow position: chr28:27161233-27161351 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 98
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 40, 30

Conread position: 2-111
Cow position: chr28:20397277-20397387 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 91
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 39, 0

Conread position: 2-119
Cow position: chr28:4307804-4307924 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 95
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 39, 0

Conread position: 2-123
Cow position: chr28:4765769-4765645 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 102
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 39, 0

Conread position: 3-113
Cow position: chr28:5144429-5144540 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 91
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 38, 0

Conread position: 3-116
Cow position: chr28:3449395-3449281 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 91
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 38, 0

Conread position: 3-117
Cow position: chr28:4823696-4823581 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 90
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 38, 0

Conread position: 3-119
Cow position: chr28:16085417-16085300 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 92
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 41, 0

Conread position: 8-118
Cow position: chr28:21380968-21380857 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 90
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 33, 0

Conread position: 24-118
Cow position: chr28:17012223-17012318 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 82
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 17, 0

Conread position: 1-111
Cow position: chr29:5789115-5789005 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 88
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 1-112
Cow position: chr29:11053773-11053885 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 92
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 42, 56

Conread position: 1-113
Cow position: chr29:24187978-24188091 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 90
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 1-116
Cow position: chr29:19558932-19559048 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 92
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 1-116
Cow position: chr29:31934466-31934350 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 92
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 1-118
Cow position: chr29:4085396-4085282 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 95
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 40, 60

Conread position: 1-118
Cow position: chr29:23825760-23825639 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 97
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 39, 0

Conread position: 1-119
Cow position: chr29:868862-868743 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 92
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 1-119
Cow position: chr29:6286074-6286194 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 95
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 42, 0

Conread position: 1-119
Cow position: chr29:8686417-8686298 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 98
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 40, 0

Conread position: 1-119
Cow position: chr29:31981918-31981799 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 95
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 1-120
Cow position: chr29:16365798-16365923 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 102
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 1-124
Cow position: chr29:22936358-22936234 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 100
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 15, 57

Conread position: 1-124
Cow position: chr29:42630208-42630084 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 98
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 40, 0

Conread position: 1-134
Cow position: chr29:4423352-4423488 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 106
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 40, 0

Conread position: 2-108
Cow position: chr29:38581065-38580959 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 87
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 37, 50

Conread position: 2-118
Cow position: chr29:13867124-13867242 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 93
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 39, 0

Conread position: 2-123
Cow position: chr29:7310759-7310641 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 94
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 53, 0

Conread position: 3-117
Cow position: chr29:5520400-5520515 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 97
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 38, 0

Conread position: 3-117
Cow position: chr29:17154863-17154748 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 38, 54

Conread position: 4-118
Cow position: chr29:7103642-7103526 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 37, 0

Conread position: 13-118
Cow position: chr29:13639291-13639398 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 87
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 24-119
Cow position: chr29:2071507-2071604 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 82
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 15, 0

Conread position: 1-113
Cow position: chr3:28908138-28908251 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 90
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 1-113
Cow position: chr3:54100661-54100774 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 93
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 40, 0

Conread position: 1-117
Cow position: chr3:15153756-15153639 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 98
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 40, 0

Conread position: 1-117
Cow position: chr3:37041484-37041368 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 93
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 40, 107

Conread position: 1-118
Cow position: chr3:2025263-2025142 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 99
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 40, 0

Conread position: 1-118
Cow position: chr3:15443664-15443781 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 101
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 40, 72

Conread position: 1-118
Cow position: chr3:19792969-19792852 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 93
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 40, 23

Conread position: 1-118
Cow position: chr3:20841808-20841926 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 98
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 40, 0

Conread position: 1-118
Cow position: chr3:21997723-21997841 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 1-118
Cow position: chr3:55970572-55970454 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 97
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 40, 0

Conread position: 1-118
Cow position: chr3:81277403-81277521 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 97
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 40, 0

Conread position: 1-119
Cow position: chr3:27976459-27976578 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 100
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 40, 0

Conread position: 1-119
Cow position: chr3:72676156-72676037 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 93
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 1-120
Cow position: chr3:22221392-22221272 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 96
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 40, 57

Conread position: 1-120
Cow position: chr3:53046598-53046714 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 101
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 40, 60

Conread position: 1-123
Cow position: chr3:57760563-57760440 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 103
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 40, 0

Conread position: 1-124
Cow position: chr3:1517447-1517572 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 99
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 1-124
Cow position: chr3:59000692-59000813 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 100
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 113, 59

Conread position: 1-127
Cow position: chr3:40212969-40213095 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 104
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 40, 56

Conread position: 2-105
Cow position: chr3:48252949-48252845 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 86
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 39, 0

Conread position: 2-116
Cow position: chr3:80053478-80053592 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 93
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 40, 50

Conread position: 2-117
Cow position: chr3:64373092-64373209 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 99
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 39, 0

Conread position: 2-118
Cow position: chr3:5097271-5097154 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 93
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 39, 0

Conread position: 2-118
Cow position: chr3:70334631-70334748 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 92
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 39, 0

Conread position: 2-119
Cow position: chr3:11292184-11292302 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 98
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 39, 0

Conread position: 2-123
Cow position: chr3:36914114-36913992 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 94
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 39, 0

Conread position: 3-113
Cow position: chr3:17934875-17934986 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 90
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 38, 0

Conread position: 3-113
Cow position: chr3:52863121-52863232 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 92
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 38, 0

Conread position: 3-113
Cow position: chr3:71497075-71497186 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 91
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 38, 0

Conread position: 3-116
Cow position: chr3:23471396-23471510 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 91
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 38, 0

Conread position: 3-116
Cow position: chr3:45211364-45211250 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 92
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 38, 0

Conread position: 3-116
Cow position: chr3:57624527-57624413 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 90
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 38, 0

Conread position: 3-118
Cow position: chr3:210382-210266 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 91
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 38, 0

Conread position: 3-118
Cow position: chr3:48810582-48810698 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 38, 0

Conread position: 3-119
Cow position: chr3:24935428-24935311 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 93
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 38, 0

Conread position: 3-124
Cow position: chr3:3656577-3656454 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 99
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 38, 0

Conread position: 3-124
Cow position: chr3:59884006-59884130 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 97
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 38, 0

Conread position: 13-113
Cow position: chr3:59474175-59474074 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 84
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 17-118
Cow position: chr3:74900591-74900693 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 85
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 24, 0

Conread position: 1-106
Cow position: chr4:13919059-13918957 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 90
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 40, 60

Conread position: 1-108
Cow position: chr4:46560261-46560154 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 91
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 40, 24

Conread position: 1-113
Cow position: chr4:46455987-46456096 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 92
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 42, 60

Conread position: 1-113
Cow position: chr4:48322118-48322002 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 1-116
Cow position: chr4:37935203-37935319 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 1-117
Cow position: chr4:5460779-5460896 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 101
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 40, 0

Conread position: 1-117
Cow position: chr4:22546760-22546876 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 94
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 40, 17

Conread position: 1-117
Cow position: chr4:44782456-44782340 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 96
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 40, 68

Conread position: 1-117
Cow position: chr4:45636248-45636131 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 92
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 1-118
Cow position: chr4:19256775-19256659 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 42, 11

Conread position: 1-118
Cow position: chr4:34369368-34369486 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 93
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 1-118
Cow position: chr4:65175063-65175181 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 102
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 40, 0

Conread position: 1-119
Cow position: chr4:45706121-45706006 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 99
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 40, 60

Conread position: 1-119
Cow position: chr4:66380257-66380376 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 93
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 1-123
Cow position: chr4:46136832-46136710 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 96
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 40, 120

Conread position: 2-109
Cow position: chr4:46702577-46702685 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 87
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 39, 0

Conread position: 2-112
Cow position: chr4:27632524-27632417 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 93
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 39, 59

Conread position: 2-112
Cow position: chr4:51920625-51920514 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 90
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 41, 0

Conread position: 2-113
Cow position: chr4:24371779-24371892 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 92
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 39, 0

Conread position: 2-119
Cow position: chr4:32693869-32693750 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 95
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 39, 0

Conread position: 3-116
Cow position: chr4:12004294-12004184 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 99
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 38, 58

Conread position: 3-117
Cow position: chr4:33181624-33181509 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 94
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 38, 0

Conread position: 3-118
Cow position: chr4:40414548-40414664 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 38, 0

Conread position: 3-124
Cow position: chr4:3850631-3850509 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 96
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 38, 0

Conread position: 3-124
Cow position: chr4:13222107-13222226 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 38, 72

Conread position: 4-116
Cow position: chr4:44772964-44773077 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 96
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 37, 0

Conread position: 12-123
Cow position: chr4:52779921-52779809 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 91
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 29, 0

Conread position: 23-149
Cow position: chr4:45862477-45862348 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 100
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 18, 0

Conread position: 1-108
Cow position: chr5:11769384-11769278 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 93
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 38, 60

Conread position: 1-109
Cow position: chr5:26723562-26723454 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 92
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 40, 24

Conread position: 1-111
Cow position: chr5:5257173-5257284 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 89
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 1-112
Cow position: chr5:44796618-44796730 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 89
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 1-113
Cow position: chr5:4267785-4267672 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 93
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 40, 0

Conread position: 1-113
Cow position: chr5:14903953-14904067 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 93
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 1-113
Cow position: chr5:43844548-43844661 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 91
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 1-113
Cow position: chr5:44163253-44163367 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 93
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 1-117
Cow position: chr5:6528800-6528680 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 99
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 17, 0

Conread position: 1-117
Cow position: chr5:45225702-45225815 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 41, 0

Conread position: 1-118
Cow position: chr5:2309441-2309559 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 96
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 40, 0

Conread position: 1-118
Cow position: chr5:30805279-30805162 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 93
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 40, 57

Conread position: 1-118
Cow position: chr5:37808548-37808666 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 92
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 1-118
Cow position: chr5:45420022-45420141 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 97
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 40, 56

Conread position: 1-118
Cow position: chr5:57062414-57062532 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 98
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 40, 0

Conread position: 1-118
Cow position: chr5:63987331-63987448 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 96
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 40, 49

Conread position: 1-119
Cow position: chr5:64523748-64523867 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 99
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 40, 0

Conread position: 1-121
Cow position: chr5:50101259-50101382 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 101
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 40, 0

Conread position: 1-123
Cow position: chr5:47323577-47323455 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 101
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 42, 81

Conread position: 1-146
Cow position: chr5:65679858-65680000 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 109
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 40, 55

Conread position: 2-113
Cow position: chr5:43992438-43992326 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 90
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 39, 0

Conread position: 2-119
Cow position: chr5:58555251-58555132 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 98
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 39, 0

Conread position: 2-124
Cow position: chr5:46672319-46672195 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 97
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 39, 0

Conread position: 3-113
Cow position: chr5:49501711-49501822 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 92
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 38, 0

Conread position: 3-118
Cow position: chr5:4280561-4280443 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 96
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 41, 0

Conread position: 3-119
Cow position: chr5:9369158-9369275 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 93
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 39, 0

Conread position: 3-119
Cow position: chr5:56613451-56613568 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 92
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 38, 0

Conread position: 3-124
Cow position: chr5:11668072-11668195 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 38, 0

Conread position: 5-118
Cow position: chr5:41165199-41165085 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 90
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 36, 0

Conread position: 9-111
Cow position: chr5:18574279-18574179 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 85
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 32, 0

Conread position: 12-118
Cow position: chr5:29828151-29828043 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 89
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 29, 0

Conread position: 1-107
Cow position: chr6:42565817-42565710 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 89
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 1-113
Cow position: chr6:15242965-15242850 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 94
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 1-113
Cow position: chr6:19681396-19681509 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 90
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 1-113
Cow position: chr6:51530059-51530174 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 95
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 1-116
Cow position: chr6:1429769-1429653 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 91
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 1-117
Cow position: chr6:2585071-2584954 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 98
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 40, 0

Conread position: 1-117
Cow position: chr6:39093880-39093761 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 98
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 40, 0

Conread position: 1-117
Cow position: chr6:60740143-60740026 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 93
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 1-118
Cow position: chr6:4691847-4691964 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 97
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 40, 13

Conread position: 1-118
Cow position: chr6:56986522-56986637 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 96
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 40, 60

Conread position: 1-124
Cow position: chr6:40032319-40032192 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 104
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 40, 70

Conread position: 1-133
Cow position: chr6:37395271-37395406 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 108
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 24, 0

Conread position: 2-118
Cow position: chr6:582145-582261 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 98
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 39, 51

Conread position: 2-119
Cow position: chr6:60057527-60057645 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 95
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 39, 0

Conread position: 2-131
Cow position: chr6:35993712-35993581 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 102
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 39, 0

Conread position: 3-113
Cow position: chr6:10176175-10176286 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 95
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 38, 0

Conread position: 3-116
Cow position: chr6:47305467-47305354 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 92
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 38, 25

Conread position: 3-119
Cow position: chr6:54867644-54867527 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 93
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 38, 0

Conread position: 5-116
Cow position: chr6:18048899-18049011 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 89
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 36, 0

Conread position: 13-122
Cow position: chr6:377242-377131 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 92
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 26, 97

Conread position: 14-118
Cow position: chr6:48469116-48469011 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 86
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 27, 0

Conread position: 1-107
Cow position: chr7:58800299-58800193 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 89
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 40, 23

Conread position: 1-108
Cow position: chr7:9108595-9108487 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 87
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 1-108
Cow position: chr7:41293615-41293723 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 89
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 1-108
Cow position: chr7:51685145-51685037 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 90
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 40, 0

Conread position: 1-112
Cow position: chr7:31694508-31694620 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 93
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 40, 56

Conread position: 1-112
Cow position: chr7:33386053-33385941 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 90
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 1-113
Cow position: chr7:14524610-14524497 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 93
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 40, 0

Conread position: 1-113
Cow position: chr7:36774499-36774386 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 94
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 40, 68

Conread position: 1-116
Cow position: chr7:16022426-16022310 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 97
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 41, 56

Conread position: 1-116
Cow position: chr7:24461082-24460966 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 1-117
Cow position: chr7:8089296-8089179 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 96
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 39, 52

Conread position: 1-117
Cow position: chr7:9161544-9161662 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 93
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 1-118
Cow position: chr7:9136969-9136851 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 104
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 40, 0

Conread position: 1-118
Cow position: chr7:18947616-18947733 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 40, 80

Conread position: 1-118
Cow position: chr7:49630308-49630190 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 1-122
Cow position: chr7:23678057-23677934 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 99
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 40, 0

Conread position: 1-123
Cow position: chr7:28563259-28563382 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 1-131
Cow position: chr7:48406362-48406495 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 105
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 40, 0

Conread position: 1-139
Cow position: chr7:46823801-46823662 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 108
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 40, 0

Conread position: 2-108
Cow position: chr7:37023058-37022951 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 91
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 39, 0

Conread position: 2-113
Cow position: chr7:56081726-56081614 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 90
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 39, 0

Conread position: 2-120
Cow position: chr7:57258893-57259013 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 104
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 39, 0

Conread position: 3-116
Cow position: chr7:59558048-59558160 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 94
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 38, 67

Conread position: 3-118
Cow position: chr7:29505244-29505128 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 38, 0

Conread position: 3-122
Cow position: chr7:19981717-19981837 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 99
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 38, 0

Conread position: 4-129
Cow position: chr7:35779870-35779743 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 100
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 37, 120

Conread position: 26-124
Cow position: chr7:10886069-10885969 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 86
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 15, 0

Conread position: 1-112
Cow position: chr8:30324423-30324311 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 91
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 1-118
Cow position: chr8:537813-537932 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 99
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 40, 0

Conread position: 1-118
Cow position: chr8:17247326-17247208 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 95
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 40, 56

Conread position: 1-119
Cow position: chr8:40930402-40930284 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 94
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 40, 73

Conread position: 1-119
Cow position: chr8:45879134-45879018 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 98
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 40, 55

Conread position: 1-119
Cow position: chr8:45925716-45925600 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 98
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 40, 55

Conread position: 1-119
Cow position: chr8:47461959-47461839 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 97
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 40, 0

Conread position: 1-119
Cow position: chr8:58520394-58520274 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 99
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 40, 0

Conread position: 1-121
Cow position: chr8:37347355-37347476 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 94
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 1-123
Cow position: chr8:21911736-21911613 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 100
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 42, 0

Conread position: 1-124
Cow position: chr8:32192790-32192666 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 99
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 40, 0

Conread position: 1-131
Cow position: chr8:45127603-45127734 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 100
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 2-113
Cow position: chr8:40579315-40579427 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 92
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 39, 0

Conread position: 2-117
Cow position: chr8:4525180-4525064 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 92
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 39, 0

Conread position: 2-117
Cow position: chr8:8097168-8097284 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 99
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 39, 0

Conread position: 2-118
Cow position: chr8:642478-642592 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 86, 0

Conread position: 2-123
Cow position: chr8:19204347-19204469 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 95
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 39, 0

Conread position: 3-106
Cow position: chr8:15394763-15394866 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 86
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 38, 49

Conread position: 3-108
Cow position: chr8:3593757-3593651 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 87
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 36, 0

Conread position: 3-111
Cow position: chr8:35497585-35497691 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 90
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 38, 59

Conread position: 3-117
Cow position: chr8:1394329-1394214 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 91
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 38, 0

Conread position: 3-117
Cow position: chr8:29026539-29026654 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 91
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 38, 0

Conread position: 3-118
Cow position: chr8:20157662-20157778 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 92
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 3-118
Cow position: chr8:45244933-45245049 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 97
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 38, 0

Conread position: 3-119
Cow position: chr8:24328757-24328872 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 94
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 38, 80

Conread position: 3-140
Cow position: chr8:21600544-21600407 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 109
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 36, 124

Conread position: 4-119
Cow position: chr8:4500589-4500473 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 91
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 37, 0

Conread position: 4-123
Cow position: chr8:17179937-17180057 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 99
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 37, 0

Conread position: 5-118
Cow position: chr8:28228341-28228227 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 95
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 36, 0

Conread position: 10-119
Cow position: chr8:40143761-40143871 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 94
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 31, 0

Conread position: 1-105
Cow position: chr9:60355272-60355167 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 86
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 1-108
Cow position: chr9:12226037-12225930 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 88
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 40, 11

Conread position: 1-108
Cow position: chr9:35832679-35832571 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 88
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 1-111
Cow position: chr9:62668188-62668299 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 89
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 1-113
Cow position: chr9:7806021-7805908 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 93
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 40, 0

Conread position: 1-113
Cow position: chr9:52598781-52598668 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 91
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 1-116
Cow position: chr9:29185197-29185081 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 91
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 42, 0

Conread position: 1-116
Cow position: chr9:51566555-51566439 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 1-117
Cow position: chr9:24652344-24652461 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 95
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 42, 0

Conread position: 1-117
Cow position: chr9:52513508-52513391 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 93
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 1-117
Cow position: chr9:52839940-52839824 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 95
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 40, 30

Conread position: 1-118
Cow position: chr9:5110798-5110916 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 96
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 40, 0

Conread position: 1-118
Cow position: chr9:28354457-28354576 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 98
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 40, 0

Conread position: 1-119
Cow position: chr9:4630044-4630162 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 96
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 40, 57

Conread position: 1-119
Cow position: chr9:7409703-7409826 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 99
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 1-119
Cow position: chr9:21888110-21888228 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 98
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 40, 55

Conread position: 1-119
Cow position: chr9:42478542-42478423 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 99
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 40, 0

Conread position: 1-119
Cow position: chr9:59386829-59386708 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 100
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 40, 0

Conread position: 1-121
Cow position: chr9:8534750-8534629 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 99
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 41, 0

Conread position: 1-121
Cow position: chr9:56032375-56032254 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 96
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 1-123
Cow position: chr9:10010755-10010873 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 99
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 40, 23

Conread position: 1-123
Cow position: chr9:34283893-34284017 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 98
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 1-124
Cow position: chr9:9753451-9753327 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 101
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 40, 0

Conread position: 1-124
Cow position: chr9:22318291-22318414 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 101
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 42, 8

Conread position: 1-124
Cow position: chr9:26477156-26477280 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 100
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 40, 0

Conread position: 1-137
Cow position: chr9:30402485-30402348 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 106
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 40, 107

Conread position: 2-113
Cow position: chr9:35167117-35167229 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 97
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 39, 0

Conread position: 2-117
Cow position: chr9:11304134-11304022 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 39, 59

Conread position: 2-119
Cow position: chr9:4646384-4646266 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 92
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 39, 0

Conread position: 3-118
Cow position: chr9:9552032-9552148 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 38, 0

Conread position: 3-120
Cow position: chr9:19493524-19493406 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 96
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 38, 0

Conread position: 3-123
Cow position: chr9:41282957-41283078 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 98
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 38, 0

Conread position: 4-123
Cow position: chr9:18217156-18217035 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 95
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 37, 0

Conread position: 5-113
Cow position: chr9:25375791-25375683 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 92
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 10-107
Cow position: chr9:35375375-35375472 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 86
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 1-107
Cow position: chrX:28878058-28878165 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 91
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 40, 0

Conread position: 1-108
Cow position: chrX:19018715-19018823 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 88
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 42, 0

Conread position: 1-108
Cow position: chrX:37665807-37665699 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 87
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 1-111
Cow position: chrX:1122431-1122538 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 91
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 40, 60

Conread position: 1-111
Cow position: chrX:24170615-24170724 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 92
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 40, 9

Conread position: 1-111
Cow position: chrX:27261308-27261196 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 92
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 1-111
Cow position: chrX:27393910-27394021 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 90
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 1-111
Cow position: chrX:39220195-39220084 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 89
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 1-112
Cow position: chrX:3806798-3806686 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 94
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 40, 0

Conread position: 1-112
Cow position: chrX:29733476-29733588 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 94
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 40, 0

Conread position: 1-113
Cow position: chrX:15820710-15820598 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 89
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 1-113
Cow position: chrX:31294456-31294569 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 94
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 40, 0

Conread position: 1-117
Cow position: chrX:7278027-7277910 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 91
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 1-117
Cow position: chrX:20881829-20881940 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 97
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 30, 0

Conread position: 1-117
Cow position: chrX:34222830-34222715 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 93
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 40, 22

Conread position: 1-117
Cow position: chrX:38218832-38218713 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 94
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 8, 0

Conread position: 1-117
Cow position: chrX:40680730-40680612 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 101
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 40, 0

Conread position: 1-117
Cow position: chrX:42247066-42247184 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 104
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 40, 0

Conread position: 1-117
Cow position: chrX:42492407-42492524 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 97
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 42, 0

Conread position: 1-118
Cow position: chrX:22914926-22915042 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 96
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 40, 22

Conread position: 1-118
Cow position: chrX:25412023-25411905 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 100
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 40, 0

Conread position: 1-118
Cow position: chrX:29478839-29478722 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 95
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 1-119
Cow position: chrX:20743720-20743601 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 98
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 40, 0

Conread position: 1-119
Cow position: chrX:42894042-42893921 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 98
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 40, 0

Conread position: 1-120
Cow position: chrX:42855574-42855454 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 98
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 40, 0

Conread position: 2-148
Cow position: chrX:23785761-23785616 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 111
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 40, 29

Conread position: 3-110
Cow position: chrX:35285287-35285179 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 88
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 38, 0

Conread position: 3-111
Cow position: chrX:42449900-42450009 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 92
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 38, 0

Conread position: 3-113
Cow position: chrX:17524270-17524381 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 88
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 38, 0

Conread position: 3-113
Cow position: chrX:39180120-39180230 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 93
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 38, 15

Conread position: 3-119
Cow position: chrX:6407657-6407543 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 75, 0

Conread position: 3-119
Cow position: chrX:9365562-9365679 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 91
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 38, 0

Conread position: 3-121
Cow position: chrX:11633796-11633677 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 94
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 36, 0

Conread position: 3-121
Cow position: chrX:19943122-19943239 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 93
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 38, 0

Conread position: 3-124
Cow position: chrX:161526-161403 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 100
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 38, 0

Conread position: 3-130
Cow position: chrX:17956804-17956679 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 100
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 73, 0

Conread position: 9-117
Cow position: chrX:29289686-29289577 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 90
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 32, 0

Conread position: 10-131
Cow position: chrX:4645806-4645928 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 95
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 31, 0

Conread position: 28-118
Cow position: chrX:1572050-1572141 (view UCSC Genome Browser custom track)
Alignm length: 92
Alignm identity: 78
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 13, 0