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Cow genome map

           
Conread name:
           
Mixn-0026m09
        

               
Conread position:
               
479-650
               

               
Cow position:
               
chr1:100591134-100590959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
479-678
               

               
Cow position:
               
chr1:95523957-95524153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
75, 64
               

               
Conread position:
               
479-707
               

               
Cow position:
               
chr1:10034167-10034397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
479-708
               

               
Cow position:
               
chr1:7630578-7630811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
26, 32
               

               
Conread position:
               
479-725
               

               
Cow position:
               
chr1:22388858-22388609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
65, 235
               

               
Conread position:
               
484-802
               

               
Cow position:
               
chr1:50273227-50272883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
489-796
               

               
Cow position:
               
chr1:42176403-42176090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
231, 87
               

               
Conread position:
               
479-682
               

               
Cow position:
               
chr10:52288225-52288021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
479-708
               

               
Cow position:
               
chr10:55037215-55037444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
71, 63
               

               
Conread position:
               
479-731
               

               
Cow position:
               
chr10:42116957-42117212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
61, 184
               

               
Conread position:
               
479-800
               

               
Cow position:
               
chr10:46378424-46378078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
480-725
               

               
Cow position:
               
chr10:48741814-48741569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
85, 62
               

               
Conread position:
               
484-725
               

               
Cow position:
               
chr10:18885601-18885350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
69, 237
               

               
Conread position:
               
489-671
               

               
Cow position:
               
chr10:48585678-48585861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
489-721
               

               
Cow position:
               
chr10:31542683-31542918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
56, 72
               

               
Conread position:
               
489-798
               

               
Cow position:
               
chr10:26601654-26601972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
67, 53
               

               
Conread position:
               
478-732
               

               
Cow position:
               
chr11:58816897-58817148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
76, 28
               

               
Conread position:
               
479-697
               

               
Cow position:
               
chr11:21842444-21842225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
74, 63
               

               
Conread position:
               
479-708
               

               
Cow position:
               
chr11:32029080-32028851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
68, 157
               

               
Conread position:
               
479-717
               

               
Cow position:
               
chr11:36230078-36229836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
67, 197
               

               
Conread position:
               
479-724
               

               
Cow position:
               
chr11:84531978-84531736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
66, 111
               

               
Conread position:
               
479-784
               

               
Cow position:
               
chr11:44131676-44131989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
74, 63
               

               
Conread position:
               
479-791
               

               
Cow position:
               
chr11:54877990-54877670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
61, 116
               

               
Conread position:
               
479-802
               

               
Cow position:
               
chr11:67294279-67293940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
73, 57
               

               
Conread position:
               
489-798
               

               
Cow position:
               
chr11:4625456-4625125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
56, 189
               

               
Conread position:
               
101-323
               

               
Cow position:
               
chr12:5751790-5751580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
12, 53
               

               
Conread position:
               
336-798
               

               
Cow position:
               
chr12:5751270-5750809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 94
               

               
Conread position:
               
399-730
               

               
Cow position:
               
chr12:14522907-14523242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
61, 36
               

               
Conread position:
               
479-656
               

               
Cow position:
               
chr12:33297215-33297389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
105, 63
               

               
Conread position:
               
479-681
               

               
Cow position:
               
chr12:36666034-36666234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
63, 153
               

               
Conread position:
               
479-721
               

               
Cow position:
               
chr12:4581373-4581613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
76, 61
               

               
Conread position:
               
479-788
               

               
Cow position:
               
chr12:31869003-31869304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
75, 67
               

               
Conread position:
               
479-788
               

               
Cow position:
               
chr12:33282548-33282223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
72, 63
               

               
Conread position:
               
479-798
               

               
Cow position:
               
chr12:4544669-4544318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
65, 146
               

               
Conread position:
               
479-800
               

               
Cow position:
               
chr12:37843670-37843337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
70, 63
               

               
Conread position:
               
493-679
               

               
Cow position:
               
chr12:27439083-27438898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
57, 29
               

               
Conread position:
               
538-790
               

               
Cow position:
               
chr12:7398427-7398695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
168, 0
               

               
Conread position:
               
479-727
               

               
Cow position:
               
chr13:5717317-5717067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
44, 226
               

               
Conread position:
               
479-799
               

               
Cow position:
               
chr13:9693164-9692829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
75, 63
               

               
Conread position:
               
479-799
               

               
Cow position:
               
chr13:11129873-11129539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
74, 63
               

               
Conread position:
               
479-800
               

               
Cow position:
               
chr13:41607759-41608096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
57, 74
               

               
Conread position:
               
484-725
               

               
Cow position:
               
chr13:55604142-55603903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
69, 58
               

               
Conread position:
               
484-798
               

               
Cow position:
               
chr13:16243844-16243518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
93, 58
               

               
Conread position:
               
488-780
               

               
Cow position:
               
chr13:24690896-24690592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
56, 70
               

               
Conread position:
               
493-662
               

               
Cow position:
               
chr13:20181287-20181115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
51, 136
               

               
Conread position:
               
479-707
               

               
Cow position:
               
chr14:43038047-43038267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
77, 63
               

               
Conread position:
               
479-728
               

               
Cow position:
               
chr14:35935814-35936067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
72, 124
               

               
Conread position:
               
479-799
               

               
Cow position:
               
chr14:2298329-2298650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
61, 221
               

               
Conread position:
               
479-802
               

               
Cow position:
               
chr14:21087598-21087262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
489-795
               

               
Cow position:
               
chr14:7812912-7813227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
60, 53
               

               
Conread position:
               
479-716
               

               
Cow position:
               
chr15:11958268-11958029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
70, 63
               

               
Conread position:
               
479-732
               

               
Cow position:
               
chr15:13545830-13545584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
479-800
               

               
Cow position:
               
chr15:19724999-19725335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
479-800
               

               
Cow position:
               
chr15:48556971-48557306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
68, 61
               

               
Conread position:
               
484-798
               

               
Cow position:
               
chr15:13417518-13417846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
70, 59
               

               
Conread position:
               
484-799
               

               
Cow position:
               
chr15:46460735-46461068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
489-780
               

               
Cow position:
               
chr15:22451875-22452179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
157, 57
               

               
Conread position:
               
523-800
               

               
Cow position:
               
chr15:9368910-9369202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
25, 19
               

               
Conread position:
               
452-796
               

               
Cow position:
               
chr16:14351578-14351225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
93, 23
               

               
Conread position:
               
479-725
               

               
Cow position:
               
chr16:28112547-28112301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
65, 225
               

               
Conread position:
               
479-798
               

               
Cow position:
               
chr16:19722829-19723163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
74, 61
               

               
Conread position:
               
480-707
               

               
Cow position:
               
chr16:41688713-41688948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
484-800
               

               
Cow position:
               
chr16:13791908-13792239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
68, 58
               

               
Conread position:
               
489-732
               

               
Cow position:
               
chr16:26134960-26134710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
56, 229
               

               
Conread position:
               
479-703
               

               
Cow position:
               
chr17:1104939-1105166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
60, 176
               

               
Conread position:
               
479-725
               

               
Cow position:
               
chr17:6995707-6995950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
480-723
               

               
Cow position:
               
chr17:17478584-17478831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
60, 232
               

               
Conread position:
               
489-799
               

               
Cow position:
               
chr17:27978576-27978903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
491-709
               

               
Cow position:
               
chr17:144742-144518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
134, 114
               

               
Conread position:
               
479-802
               

               
Cow position:
               
chr18:43638078-43638426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
73, 64
               

               
Conread position:
               
484-767
               

               
Cow position:
               
chr18:43464078-43463793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
60, 96
               

               
Conread position:
               
484-788
               

               
Cow position:
               
chr18:36186838-36186542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
219, 71
               

               
Conread position:
               
484-800
               

               
Cow position:
               
chr18:29585920-29585591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
41, 35
               

               
Conread position:
               
479-726
               

               
Cow position:
               
chr19:30473230-30472985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
70, 57
               

               
Conread position:
               
479-775
               

               
Cow position:
               
chr19:19714706-19715022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
77, 63
               

               
Conread position:
               
479-800
               

               
Cow position:
               
chr19:38983370-38983707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
75, 112
               

               
Conread position:
               
484-721
               

               
Cow position:
               
chr19:42163895-42163660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
230, 22
               

               
Conread position:
               
484-800
               

               
Cow position:
               
chr19:32178341-32178014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
62, 96
               

               
Conread position:
               
485-722
               

               
Cow position:
               
chr19:13447686-13447927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
69, 57
               

               
Conread position:
               
489-798
               

               
Cow position:
               
chr19:14103814-14104122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
221, 53
               

               
Conread position:
               
493-799
               

               
Cow position:
               
chr19:9093644-9093317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
47, 187
               

               
Conread position:
               
479-768
               

               
Cow position:
               
chr2:24105899-24106194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
67, 111
               

               
Conread position:
               
479-799
               

               
Cow position:
               
chr2:70524893-70525224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
66, 193
               

               
Conread position:
               
484-779
               

               
Cow position:
               
chr2:907553-907849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
61, 191
               

               
Conread position:
               
489-708
               

               
Cow position:
               
chr2:66924403-66924622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
58, 139
               

               
Conread position:
               
489-802
               

               
Cow position:
               
chr2:24928530-24928856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
36, 30
               

               
Conread position:
               
490-708
               

               
Cow position:
               
chr2:32642741-32642968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
49, 216
               

               
Conread position:
               
496-778
               

               
Cow position:
               
chr2:62038218-62037930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
140, 57
               

               
Conread position:
               
484-706
               

               
Cow position:
               
chr20:869157-868929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
479-682
               

               
Cow position:
               
chr21:41428872-41429082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
479-771
               

               
Cow position:
               
chr21:17084801-17085103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
73, 63
               

               
Conread position:
               
479-802
               

               
Cow position:
               
chr21:36657005-36657352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
75, 63
               

               
Conread position:
               
484-785
               

               
Cow position:
               
chr21:20576016-20575699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
489-723
               

               
Cow position:
               
chr21:35742707-35742466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
64, 53
               

               
Conread position:
               
494-662
               

               
Cow position:
               
chr21:41459268-41459099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
156, 0
               

               
Conread position:
               
471-718
               

               
Cow position:
               
chr22:4650421-4650674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
78, 71
               

               
Conread position:
               
479-721
               

               
Cow position:
               
chr22:27223305-27223058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
479-796
               

               
Cow position:
               
chr22:32358663-32358339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
224, 41
               

               
Conread position:
               
484-724
               

               
Cow position:
               
chr22:39451935-39452191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
493-717
               

               
Cow position:
               
chr22:27790814-27791037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
102, 71
               

               
Conread position:
               
495-726
               

               
Cow position:
               
chr22:41470021-41469793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
396-800
               

               
Cow position:
               
chr23:30634073-30633672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
149, 39
               

               
Conread position:
               
479-701
               

               
Cow position:
               
chr23:24672775-24673012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
144, 63
               

               
Conread position:
               
479-720
               

               
Cow position:
               
chr23:26941355-26941598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
67, 189
               

               
Conread position:
               
479-798
               

               
Cow position:
               
chr23:9518088-9517756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
77, 63
               

               
Conread position:
               
508-799
               

               
Cow position:
               
chr23:9712200-9711896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
201, 0
               

               
Conread position:
               
478-717
               

               
Cow position:
               
chr24:20507370-20507131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
67, 106
               

               
Conread position:
               
479-657
               

               
Cow position:
               
chr24:40347401-40347219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
66, 92
               

               
Conread position:
               
479-721
               

               
Cow position:
               
chr24:16243289-16243044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
68, 105
               

               
Conread position:
               
479-788
               

               
Cow position:
               
chr24:26846924-26846607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
77, 63
               

               
Conread position:
               
479-798
               

               
Cow position:
               
chr24:27153970-27153642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
77, 63
               

               
Conread position:
               
488-698
               

               
Cow position:
               
chr24:42888370-42888581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
489-699
               

               
Cow position:
               
chr24:29033190-29033398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
489-733
               

               
Cow position:
               
chr24:24495944-24496194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
55, 142
               

               
Conread position:
               
479-730
               

               
Cow position:
               
chr25:18023130-18023373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
54, 128
               

               
Conread position:
               
479-730
               

               
Cow position:
               
chr25:23410028-23410283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
479-789
               

               
Cow position:
               
chr25:23739867-23739558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
76, 55
               

               
Conread position:
               
479-802
               

               
Cow position:
               
chr25:23672492-23672169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
76, 55
               

               
Conread position:
               
484-797
               

               
Cow position:
               
chr25:9595694-9596017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
488-681
               

               
Cow position:
               
chr25:18321825-18322019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
66, 51
               

               
Conread position:
               
493-786
               

               
Cow position:
               
chr25:20248700-20248997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
54, 127
               

               
Conread position:
               
479-786
               

               
Cow position:
               
chr26:19791778-19791455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
63, 126
               

               
Conread position:
               
484-707
               

               
Cow position:
               
chr26:1600549-1600334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
489-725
               

               
Cow position:
               
chr26:15516613-15516376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
65, 53
               

               
Conread position:
               
489-800
               

               
Cow position:
               
chr26:6476033-6475703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
56, 140
               

               
Conread position:
               
540-720
               

               
Cow position:
               
chr26:26192056-26191875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
160, 0
               

               
Conread position:
               
479-796
               

               
Cow position:
               
chr27:26785399-26785728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
65, 54
               

               
Conread position:
               
479-798
               

               
Cow position:
               
chr27:25885386-25885713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
70, 113
               

               
Conread position:
               
485-800
               

               
Cow position:
               
chr27:26856633-26856961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
493-798
               

               
Cow position:
               
chr27:23658165-23658481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
479-659
               

               
Cow position:
               
chr28:7737179-7737364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
75, 64
               

               
Conread position:
               
479-702
               

               
Cow position:
               
chr28:5117529-5117747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
180, 63
               

               
Conread position:
               
479-702
               

               
Cow position:
               
chr28:11501595-11501368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
479-789
               

               
Cow position:
               
chr28:21363149-21363459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
77, 63
               

               
Conread position:
               
479-796
               

               
Cow position:
               
chr28:17369686-17370012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
70, 63
               

               
Conread position:
               
485-671
               

               
Cow position:
               
chr28:758147-757956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
70, 57
               

               
Conread position:
               
479-676
               

               
Cow position:
               
chr29:26128902-26128702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
65, 120
               

               
Conread position:
               
479-724
               

               
Cow position:
               
chr29:2482952-2482703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
74, 61
               

               
Conread position:
               
479-775
               

               
Cow position:
               
chr29:2484527-2484227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
74, 61
               

               
Conread position:
               
479-798
               

               
Cow position:
               
chr29:13553512-13553848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
479-800
               

               
Cow position:
               
chr29:2837687-2837353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
77, 63
               

               
Conread position:
               
483-717
               

               
Cow position:
               
chr29:44607799-44607560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
62, 82
               

               
Conread position:
               
484-717
               

               
Cow position:
               
chr29:32644287-32644522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
64, 58
               

               
Conread position:
               
493-724
               

               
Cow position:
               
chr29:16356385-16356603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
516-795
               

               
Cow position:
               
chr29:18693684-18693406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
38, 154
               

               
Conread position:
               
479-662
               

               
Cow position:
               
chr3:27546918-27546731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
479-728
               

               
Cow position:
               
chr3:49429135-49428884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
65, 174
               

               
Conread position:
               
479-783
               

               
Cow position:
               
chr3:73956345-73956665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
60, 155
               

               
Conread position:
               
484-725
               

               
Cow position:
               
chr3:23944481-23944712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
66, 170
               

               
Conread position:
               
484-795
               

               
Cow position:
               
chr3:15685546-15685232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
61, 140
               

               
Conread position:
               
485-682
               

               
Cow position:
               
chr3:65877545-65877744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
68, 160
               

               
Conread position:
               
489-662
               

               
Cow position:
               
chr3:15570958-15571140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
489-732
               

               
Cow position:
               
chr3:70913735-70913487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
497-721
               

               
Cow position:
               
chr3:68663105-68663337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
53, 94
               

               
Conread position:
               
479-673
               

               
Cow position:
               
chr4:32748700-32748895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
72, 119
               

               
Conread position:
               
479-796
               

               
Cow position:
               
chr4:6446083-6446409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
46, 27
               

               
Conread position:
               
479-800
               

               
Cow position:
               
chr4:26540586-26540939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
71, 250
               

               
Conread position:
               
479-802
               

               
Cow position:
               
chr4:44196056-44196390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
73, 63
               

               
Conread position:
               
485-708
               

               
Cow position:
               
chr4:38825946-38825721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
69, 57
               

               
Conread position:
               
489-798
               

               
Cow position:
               
chr4:41976285-41975968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
61, 53
               

               
Conread position:
               
493-796
               

               
Cow position:
               
chr4:42638971-42638659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
215, 62
               

               
Conread position:
               
449-725
               

               
Cow position:
               
chr5:50900225-50900492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
468-714
               

               
Cow position:
               
chr5:51818917-51819163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
85, 207
               

               
Conread position:
               
479-642
               

               
Cow position:
               
chr5:70402280-70402445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
74, 63
               

               
Conread position:
               
479-662
               

               
Cow position:
               
chr5:59303879-59303697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
113, 63
               

               
Conread position:
               
479-724
               

               
Cow position:
               
chr5:72041604-72041852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
65, 244
               

               
Conread position:
               
479-796
               

               
Cow position:
               
chr5:66257046-66257373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
66, 305
               

               
Conread position:
               
479-798
               

               
Cow position:
               
chr5:75754701-75754368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
66, 196
               

               
Conread position:
               
479-799
               

               
Cow position:
               
chr5:37047327-37047667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
74, 63
               

               
Conread position:
               
479-800
               

               
Cow position:
               
chr5:19978490-19978154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
484-798
               

               
Cow position:
               
chr5:27903825-27904154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
61, 323
               

               
Conread position:
               
485-708
               

               
Cow position:
               
chr5:71063982-71064206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
68, 120
               

               
Conread position:
               
489-657
               

               
Cow position:
               
chr5:55088300-55088472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
489-786
               

               
Cow position:
               
chr5:30347543-30347236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
240, 53
               

               
Conread position:
               
489-800
               

               
Cow position:
               
chr5:3441857-3442175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
55, 262
               

               
Conread position:
               
491-776
               

               
Cow position:
               
chr5:41469234-41469518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
62, 51
               

               
Conread position:
               
516-796
               

               
Cow position:
               
chr5:34232164-34232457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
36, 26
               

               
Conread position:
               
468-790
               

               
Cow position:
               
chr6:15471264-15470925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
13, 205
               

               
Conread position:
               
478-709
               

               
Cow position:
               
chr6:52189424-52189204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
479-717
               

               
Cow position:
               
chr6:35725499-35725740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
74, 216
               

               
Conread position:
               
479-725
               

               
Cow position:
               
chr6:52401204-52401450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
66, 157
               

               
Conread position:
               
479-794
               

               
Cow position:
               
chr6:31688974-31688640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
74, 63
               

               
Conread position:
               
479-796
               

               
Cow position:
               
chr6:47977493-47977822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
75, 185
               

               
Conread position:
               
479-798
               

               
Cow position:
               
chr6:38988262-38987929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
76, 63
               

               
Conread position:
               
479-799
               

               
Cow position:
               
chr6:12387913-12387575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
484-798
               

               
Cow position:
               
chr6:3375179-3374847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
69, 200
               

               
Conread position:
               
488-715
               

               
Cow position:
               
chr6:10236753-10236975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
60, 51
               

               
Conread position:
               
473-721
               

               
Cow position:
               
chr7:33063282-33063029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
479-721
               

               
Cow position:
               
chr7:31446789-31446546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
67, 127
               

               
Conread position:
               
479-721
               

               
Cow position:
               
chr7:45721434-45721676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
58, 76
               

               
Conread position:
               
479-724
               

               
Cow position:
               
chr7:36745727-36745976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
479-731
               

               
Cow position:
               
chr7:36128404-36128657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
65, 226
               

               
Conread position:
               
479-732
               

               
Cow position:
               
chr7:25703814-25703554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
44, 240
               

               
Conread position:
               
479-799
               

               
Cow position:
               
chr7:98701-98369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
62, 112
               

               
Conread position:
               
484-783
               

               
Cow position:
               
chr7:61670698-61671004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 58
               

               
Conread position:
               
479-656
               

               
Cow position:
               
chr8:12719467-12719647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
73, 63
               

               
Conread position:
               
479-796
               

               
Cow position:
               
chr8:21224690-21224360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
479-798
               

               
Cow position:
               
chr8:55444612-55444281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
66, 101
               

               
Conread position:
               
479-800
               

               
Cow position:
               
chr8:21788667-21788335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
479-800
               

               
Cow position:
               
chr8:29416960-29416621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
58, 179
               

               
Conread position:
               
479-800
               

               
Cow position:
               
chr8:46329065-46329398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
46, 41
               

               
Conread position:
               
481-676
               

               
Cow position:
               
chr8:26921994-26922186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
59, 116
               

               
Conread position:
               
484-708
               

               
Cow position:
               
chr8:615643-615419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
67, 207
               

               
Conread position:
               
484-798
               

               
Cow position:
               
chr8:21077925-21078252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
65, 58
               

               
Conread position:
               
484-800
               

               
Cow position:
               
chr8:32080285-32079954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
83, 231
               

               
Conread position:
               
484-800
               

               
Cow position:
               
chr8:35988866-35989201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
490-699
               

               
Cow position:
               
chr8:538628-538415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
493-661
               

               
Cow position:
               
chr8:37502132-37502303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
62, 53
               

               
Conread position:
               
493-661
               

               
Cow position:
               
chr8:37504328-37504499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
62, 53
               

               
Conread position:
               
479-721
               

               
Cow position:
               
chr9:47448277-47448031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
479-800
               

               
Cow position:
               
chr9:34310698-34310357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
61, 101
               

               
Conread position:
               
484-802
               

               
Cow position:
               
chr9:3722220-3722552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
67, 173
               

               
Conread position:
               
485-662
               

               
Cow position:
               
chr9:15206121-15206303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
69, 57
               

               
Conread position:
               
489-799
               

               
Cow position:
               
chr9:19382974-19382648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
172, 53
               

               
Conread position:
               
478-795
               

               
Cow position:
               
chrX:25282095-25281757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
479-677
               

               
Cow position:
               
chrX:2763963-2764169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
75, 63
               

               
Conread position:
               
479-717
               

               
Cow position:
               
chrX:487936-488179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
479-725
               

               
Cow position:
               
chrX:29055318-29055560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
77, 63
               

               
Conread position:
               
479-725
               

               
Cow position:
               
chrX:41594883-41594634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
65, 196
               

               
Conread position:
               
479-733
               

               
Cow position:
               
chrX:3081732-3081474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
479-800
               

               
Cow position:
               
chrX:37955300-37955636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
73, 63
               

               
Conread position:
               
489-640
               

               
Cow position:
               
chrX:1729453-1729298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
489-725
               

               
Cow position:
               
chrX:25436522-25436287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
65, 54
               

               
Conread position:
               
489-799
               

               
Cow position:
               
chrX:41304329-41304007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
221, 53
               

               
Conread position:
               
491-725
               

               
Cow position:
               
chrX:37066683-37066917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
62, 115
               

               
Conread position:
               
493-800
               

               
Cow position:
               
chrX:12724180-12724502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
52, 196
               

               
Conread position:
               
516-802
               

               
Cow position:
               
chrX:35440986-35441286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
40, 30