Cow genome map
| Conread name: | OvF2-UMC-p2mm4-020-e08 |
| Conread position: | 3-380 |
| Cow position: | chr1:67178852-67178475 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 55 |
| Conread position: | 123-294 |
| Cow position: | chr1:83916081-83916257 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 20, 123 |
| Conread position: | 148-381 |
| Cow position: | chr1:53615082-53615313 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 41, 26 |
| Conread position: | 140-382 |
| Cow position: | chr10:22287287-22287044 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 52, 15 |
| Conread position: | 142-381 |
| Cow position: | chr10:28810505-28810753 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 38, 207 |
| Conread position: | 142-382 |
| Cow position: | chr10:17402970-17403216 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 50, 130 |
| Conread position: | 142-382 |
| Cow position: | chr10:31785421-31785673 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 45, 133 |
| Conread position: | 142-382 |
| Cow position: | chr10:32934210-32933960 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 42, 13 |
| Conread position: | 142-382 |
| Cow position: | chr10:53792003-53792246 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 45, 71 |
| Conread position: | 122-382 |
| Cow position: | chr11:54125624-54125890 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 183 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 65, 148 |
| Conread position: | 141-373 |
| Cow position: | chr11:80149475-80149719 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 44, 140 |
| Conread position: | 109-382 |
| Cow position: | chr12:48469140-48468867 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 32, 107 |
| Conread position: | 122-382 |
| Cow position: | chr12:27353130-27353398 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 184 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 21, 185 |
| Conread position: | 127-376 |
| Cow position: | chr12:16339680-16339936 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 14, 40 |
| Conread position: | 148-381 |
| Cow position: | chr12:38343954-38344194 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 39, 68 |
| Conread position: | 120-382 |
| Cow position: | chr13:48550725-48550460 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 181 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 21, 165 |
| Conread position: | 159-382 |
| Cow position: | chr13:32802368-32802608 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 194-383 |
| Cow position: | chr13:52774911-52775107 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 222-382 |
| Cow position: | chr13:22489865-22489699 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 37, 86 |
| Conread position: | 123-380 |
| Cow position: | chr14:37611126-37610858 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 188 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 18, 44 |
| Conread position: | 123-382 |
| Cow position: | chr14:25132170-25132447 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 126-370 |
| Cow position: | chr14:33600941-33601198 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 15, 151 |
| Conread position: | 128-381 |
| Cow position: | chr14:47482051-47482316 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 13, 108 |
| Conread position: | 101-381 |
| Cow position: | chr15:33760487-33760774 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 196 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 83, 40 |
| Conread position: | 122-367 |
| Cow position: | chr15:199096-199354 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 178 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 19, 38 |
| Conread position: | 140-382 |
| Cow position: | chr15:22971597-22971854 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 122-308 |
| Cow position: | chr16:43889693-43889884 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 65, 20 |
| Conread position: | 148-376 |
| Cow position: | chr16:54457147-54457393 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 122-376 |
| Cow position: | chr18:21240291-21240018 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 13, 198 |
| Conread position: | 122-381 |
| Cow position: | chr18:7682233-7682492 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 19, 71 |
| Conread position: | 149-382 |
| Cow position: | chr18:32047026-32046788 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 25, 120 |
| Conread position: | 175-382 |
| Cow position: | chr18:49155971-49156185 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 27, 176 |
| Conread position: | 190-382 |
| Cow position: | chr18:44489487-44489687 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 122-382 |
| Cow position: | chr19:16808977-16808705 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 140-367 |
| Cow position: | chr19:50669470-50669237 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 52, 108 |
| Conread position: | 145-376 |
| Cow position: | chr19:19432321-19432093 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 108, 44 |
| Conread position: | 122-361 |
| Cow position: | chr2:80450295-80450046 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 11, 137 |
| Conread position: | 141-382 |
| Cow position: | chr2:76826546-76826303 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 44, 67 |
| Conread position: | 141-382 |
| Cow position: | chr20:3446773-3446517 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 38, 25 |
| Conread position: | 126-382 |
| Cow position: | chr21:1264444-1264180 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 15, 112 |
| Conread position: | 119-376 |
| Cow position: | chr22:12219233-12218978 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 22, 62 |
| Conread position: | 157-382 |
| Cow position: | chr22:8696885-8696659 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 22, 52 |
| Conread position: | 190-382 |
| Cow position: | chr22:8696539-8696341 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 122-380 |
| Cow position: | chr23:13504655-13504930 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 19, 156 |
| Conread position: | 126-374 |
| Cow position: | chr23:35072134-35071876 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 15, 108 |
| Conread position: | 133-377 |
| Cow position: | chr23:35687668-35687926 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 59, 203 |
| Conread position: | 63-381 |
| Cow position: | chr24:23808320-23807987 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 32, 20 |
| Conread position: | 128-376 |
| Cow position: | chr25:13935000-13935245 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 15, 65 |
| Conread position: | 128-382 |
| Cow position: | chr25:13004592-13004849 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 13, 166 |
| Conread position: | 122-382 |
| Cow position: | chr26:8506497-8506766 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 19, 8 |
| Conread position: | 122-382 |
| Cow position: | chr26:24276299-24276563 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 21, 185 |
| Conread position: | 190-381 |
| Cow position: | chr27:4077540-4077728 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 60, 81 |
| Conread position: | 122-382 |
| Cow position: | chr28:24337367-24337641 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 25, 46 |
| Conread position: | 126-382 |
| Cow position: | chr29:36518328-36518077 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 15, 45 |
| Conread position: | 148-382 |
| Cow position: | chr29:40142971-40143201 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 124, 44 |
| Conread position: | 122-367 |
| Cow position: | chr3:76237228-76236976 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 65, 50 |
| Conread position: | 122-383 |
| Cow position: | chr3:47617273-47617544 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 9, 28 |
| Conread position: | 127-382 |
| Cow position: | chr3:73320998-73320741 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 14, 66 |
| Conread position: | 140-382 |
| Cow position: | chr3:63249063-63248814 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 42, 26 |
| Conread position: | 141-382 |
| Cow position: | chr3:50587632-50587379 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 51, 118 |
| Conread position: | 142-382 |
| Cow position: | chr3:58171660-58171423 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 129, 45 |
| Conread position: | 151-381 |
| Cow position: | chr3:50731782-50731539 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 36, 147 |
| Conread position: | 130-382 |
| Cow position: | chr4:58160828-58161089 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 49, 36 |
| Conread position: | 142-382 |
| Cow position: | chr4:38315260-38315508 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 145-382 |
| Cow position: | chr4:35120996-35121242 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 48, 233 |
| Conread position: | 120-382 |
| Cow position: | chr5:18479580-18479313 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 72, 21 |
| Conread position: | 122-382 |
| Cow position: | chr5:48125609-48125354 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 49, 20 |
| Conread position: | 127-378 |
| Cow position: | chr5:37460747-37460488 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 17, 29 |
| Conread position: | 140-381 |
| Cow position: | chr5:32260345-32260594 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 50, 136 |
| Conread position: | 140-382 |
| Cow position: | chr5:44004063-44004317 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 39, 26 |
| Conread position: | 122-376 |
| Cow position: | chr6:40168370-40168115 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 19, 161 |
| Conread position: | 122-377 |
| Cow position: | chr6:16316034-16315770 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 21, 163 |
| Conread position: | 109-382 |
| Cow position: | chr7:36242399-36242121 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 42, 11 |
| Conread position: | 202-382 |
| Cow position: | chr8:25367953-25368137 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 49, 131 |
| Conread position: | 122-296 |
| Cow position: | chrX:20591661-20591480 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 19, 154 |
| Conread position: | 122-382 |
| Cow position: | chrX:27418835-27419105 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 19, 137 |
| Conread position: | 126-370 |
| Cow position: | chrX:23683329-23683069 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 17, 180 |
| Conread position: | 140-382 |
| Cow position: | chrX:489223-488976 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 53, 221 |
| Conread position: | 140-382 |
| Cow position: | chrX:38390690-38390944 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 36, 170 |
| Conread position: | 140-383 |
| Cow position: | chrX:33673694-33673951 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 141-379 |
| Cow position: | chrX:18540573-18540821 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 44, 25 |
| Conread position: | 148-382 |
| Cow position: | chrX:20655008-20654761 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 45, 0 |