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Cow genome map

           
Conread name:
           
OvF6-UMC-p6mm1-003-d08
        

               
Conread position:
               
2-349
               

               
Cow position:
               
chr1:22837945-22837597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
25, 94
               

               
Conread position:
               
35-236
               

               
Cow position:
               
chr1:91890318-91890125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
61, 7
               

               
Conread position:
               
35-244
               

               
Cow position:
               
chr1:30531947-30531746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
61, 7
               

               
Conread position:
               
35-245
               

               
Cow position:
               
chr1:65389632-65389834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
61, 7
               

               
Conread position:
               
42-255
               

               
Cow position:
               
chr1:38478384-38478593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
54, 76
               

               
Conread position:
               
42-283
               

               
Cow position:
               
chr1:44701704-44701463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
53, 73
               

               
Conread position:
               
42-284
               

               
Cow position:
               
chr1:50257585-50257810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
51, 77
               

               
Conread position:
               
50-284
               

               
Cow position:
               
chr1:40588897-40589122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
90, 13
               

               
Conread position:
               
2-270
               

               
Cow position:
               
chr10:25013866-25013596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
33, 123
               

               
Conread position:
               
2-282
               

               
Cow position:
               
chr10:3783499-3783770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
93, 26
               

               
Conread position:
               
2-347
               

               
Cow position:
               
chr10:60739776-60740120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
35, 64
               

               
Conread position:
               
5-284
               

               
Cow position:
               
chr10:2637056-2637332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
22, 84
               

               
Conread position:
               
28-284
               

               
Cow position:
               
chr10:25890120-25890374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
149, 66
               

               
Conread position:
               
35-236
               

               
Cow position:
               
chr10:64347068-64347261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
61, 7
               

               
Conread position:
               
35-243
               

               
Cow position:
               
chr10:9682070-9681870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
61, 7
               

               
Conread position:
               
35-245
               

               
Cow position:
               
chr10:14332743-14332539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
61, 7
               

               
Conread position:
               
38-284
               

               
Cow position:
               
chr10:17138128-17138363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
60, 29
               

               
Conread position:
               
39-239
               

               
Cow position:
               
chr10:54158822-54159018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
23, 81
               

               
Conread position:
               
43-273
               

               
Cow position:
               
chr10:3983706-3983480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
53, 40
               

               
Conread position:
               
44-231
               

               
Cow position:
               
chr10:69028687-69028497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
126-283
               

               
Cow position:
               
chr10:40738211-40738368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
121, 111
               

               
Conread position:
               
2-284
               

               
Cow position:
               
chr11:8819905-8820178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
35, 79
               

               
Conread position:
               
3-263
               

               
Cow position:
               
chr11:54508631-54508898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
32, 124
               

               
Conread position:
               
13-283
               

               
Cow position:
               
chr11:65323833-65323562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
22, 9
               

               
Conread position:
               
19-283
               

               
Cow position:
               
chr11:38796520-38796785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
16, 104
               

               
Conread position:
               
24-291
               

               
Cow position:
               
chr11:13454539-13454278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
83, 27
               

               
Conread position:
               
28-270
               

               
Cow position:
               
chr11:51224358-51224594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
65, 91
               

               
Conread position:
               
29-357
               

               
Cow position:
               
chr11:17452797-17453129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
122, 48
               

               
Conread position:
               
31-227
               

               
Cow position:
               
chr11:24539553-24539740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
37, 30
               

               
Conread position:
               
31-285
               

               
Cow position:
               
chr11:26051792-26051544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
60, 87
               

               
Conread position:
               
35-236
               

               
Cow position:
               
chr11:12317334-12317141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
64, 7
               

               
Conread position:
               
35-242
               

               
Cow position:
               
chr11:19099750-19099550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
61, 7
               

               
Conread position:
               
42-242
               

               
Cow position:
               
chr11:12177829-12178023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
20, 77
               

               
Conread position:
               
42-274
               

               
Cow position:
               
chr11:42466180-42465954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
20, 26
               

               
Conread position:
               
42-284
               

               
Cow position:
               
chr11:96853-96614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
51, 77
               

               
Conread position:
               
49-284
               

               
Cow position:
               
chr11:74207769-74207543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
38, 70
               

               
Conread position:
               
50-284
               

               
Cow position:
               
chr11:45853215-45852986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
45, 34
               

               
Conread position:
               
66-283
               

               
Cow position:
               
chr11:15653256-15653464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
30, 52
               

               
Conread position:
               
67-284
               

               
Cow position:
               
chr11:12178747-12178958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
37, 51
               

               
Conread position:
               
67-284
               

               
Cow position:
               
chr11:84213960-84213747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
29, 51
               

               
Conread position:
               
67-357
               

               
Cow position:
               
chr11:9473736-9473445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
10, 55
               

               
Conread position:
               
126-283
               

               
Cow position:
               
chr11:40231178-40231019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
123, 83
               

               
Conread position:
               
129-330
               

               
Cow position:
               
chr11:40502645-40502439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
109, 202
               

               
Conread position:
               
3-280
               

               
Cow position:
               
chr12:9397580-9397282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
39-236
               

               
Cow position:
               
chr12:18585695-18585885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
57, 79
               

               
Conread position:
               
42-242
               

               
Cow position:
               
chr12:27614441-27614634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
53, 76
               

               
Conread position:
               
42-245
               

               
Cow position:
               
chr12:43681030-43681228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
57, 76
               

               
Conread position:
               
126-282
               

               
Cow position:
               
chr12:42557962-42557808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
2-284
               

               
Cow position:
               
chr13:44659622-44659349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
31, 11
               

               
Conread position:
               
2-284
               

               
Cow position:
               
chr13:54067676-54067950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
90, 65
               

               
Conread position:
               
3-244
               

               
Cow position:
               
chr13:393363-393126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
32, 116
               

               
Conread position:
               
22-284
               

               
Cow position:
               
chr13:4667894-4668150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
72, 28
               

               
Conread position:
               
29-284
               

               
Cow position:
               
chr13:19538296-19538040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
32, 36
               

               
Conread position:
               
35-236
               

               
Cow position:
               
chr13:14303172-14302982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
35-236
               

               
Cow position:
               
chr13:15921646-15921453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
61, 7
               

               
Conread position:
               
35-245
               

               
Cow position:
               
chr13:34345115-34345317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
61, 7
               

               
Conread position:
               
35-247
               

               
Cow position:
               
chr13:13902668-13902871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
60, 7
               

               
Conread position:
               
35-250
               

               
Cow position:
               
chr13:43975140-43974931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
61, 7
               

               
Conread position:
               
38-284
               

               
Cow position:
               
chr13:11351205-11351444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
56, 80
               

               
Conread position:
               
39-236
               

               
Cow position:
               
chr13:38612038-38612228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
60, 79
               

               
Conread position:
               
42-236
               

               
Cow position:
               
chr13:19637970-19638157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
54, 77
               

               
Conread position:
               
42-284
               

               
Cow position:
               
chr13:57158847-57159083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
53, 14
               

               
Conread position:
               
54-282
               

               
Cow position:
               
chr13:1958501-1958728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
40, 65
               

               
Conread position:
               
121-284
               

               
Cow position:
               
chr13:14645651-14645484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
126-314
               

               
Cow position:
               
chr13:37544039-37544229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
113, 164
               

               
Conread position:
               
2-280
               

               
Cow position:
               
chr14:32759862-32759582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
35, 96
               

               
Conread position:
               
2-284
               

               
Cow position:
               
chr14:39321483-39321763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
29, 7
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr14:41477582-41477857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
41, 28
               

               
Conread position:
               
3-314
               

               
Cow position:
               
chr14:40984734-40984431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
92, 13
               

               
Conread position:
               
3-358
               

               
Cow position:
               
chr14:48438474-48438106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
41, 62
               

               
Conread position:
               
30-280
               

               
Cow position:
               
chr14:13097770-13098015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
65, 32
               

               
Conread position:
               
38-268
               

               
Cow position:
               
chr14:33515217-33515445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
29, 24
               

               
Conread position:
               
39-289
               

               
Cow position:
               
chr14:47918851-47918612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
37, 48
               

               
Conread position:
               
49-236
               

               
Cow position:
               
chr14:20773859-20774041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
47, 69
               

               
Conread position:
               
67-284
               

               
Cow position:
               
chr14:37943737-37943956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
17, 99
               

               
Conread position:
               
2-279
               

               
Cow position:
               
chr15:27726851-27726568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
87, 14
               

               
Conread position:
               
3-284
               

               
Cow position:
               
chr15:16926049-16925772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
24, 121
               

               
Conread position:
               
17-353
               

               
Cow position:
               
chr15:25122275-25121937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
22, 106
               

               
Conread position:
               
40-236
               

               
Cow position:
               
chr15:19735110-19734921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
56, 78
               

               
Conread position:
               
42-236
               

               
Cow position:
               
chr15:21663051-21662864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
54, 76
               

               
Conread position:
               
42-242
               

               
Cow position:
               
chr15:7267290-7267485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
53, 76
               

               
Conread position:
               
94-284
               

               
Cow position:
               
chr15:29670040-29670225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
145, 27
               

               
Conread position:
               
2-284
               

               
Cow position:
               
chr16:31504221-31504504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
33, 122
               

               
Conread position:
               
3-287
               

               
Cow position:
               
chr16:43723492-43723207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 63
               

               
Conread position:
               
34-236
               

               
Cow position:
               
chr16:43894926-43894732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
62, 8
               

               
Conread position:
               
35-242
               

               
Cow position:
               
chr16:5435162-5435361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
61, 7
               

               
Conread position:
               
35-245
               

               
Cow position:
               
chr16:52526570-52526772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
61, 7
               

               
Conread position:
               
35-252
               

               
Cow position:
               
chr16:839621-839829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
61, 7
               

               
Conread position:
               
37-350
               

               
Cow position:
               
chr16:34247547-34247238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
58, 77
               

               
Conread position:
               
42-236
               

               
Cow position:
               
chr16:26666047-26666234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
54, 76
               

               
Conread position:
               
43-285
               

               
Cow position:
               
chr16:52408752-52408515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
52, 19
               

               
Conread position:
               
126-283
               

               
Cow position:
               
chr16:54213820-54213982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
1-284
               

               
Cow position:
               
chr17:35999846-35999572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
94, 15
               

               
Conread position:
               
2-284
               

               
Cow position:
               
chr17:1220117-1219834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
35, 25
               

               
Conread position:
               
25-284
               

               
Cow position:
               
chr17:5391342-5391094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
64, 93
               

               
Conread position:
               
30-280
               

               
Cow position:
               
chr17:18892563-18892810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
210, 88
               

               
Conread position:
               
34-236
               

               
Cow position:
               
chr17:29950111-29950305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
62, 8
               

               
Conread position:
               
35-236
               

               
Cow position:
               
chr17:24027086-24026893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
64, 7
               

               
Conread position:
               
42-236
               

               
Cow position:
               
chr17:6262759-6262946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
54, 75
               

               
Conread position:
               
42-249
               

               
Cow position:
               
chr17:22106732-22106531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
54, 76
               

               
Conread position:
               
42-260
               

               
Cow position:
               
chr17:731586-731374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
187, 25
               

               
Conread position:
               
42-284
               

               
Cow position:
               
chr17:37460278-37460518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
20, 42
               

               
Conread position:
               
43-284
               

               
Cow position:
               
chr17:38759619-38759392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
14, 20
               

               
Conread position:
               
67-275
               

               
Cow position:
               
chr17:30426841-30427047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
156, 50
               

               
Conread position:
               
126-284
               

               
Cow position:
               
chr17:20213735-20213577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-242
               

               
Cow position:
               
chr18:48529193-48529436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
28, 126
               

               
Conread position:
               
3-289
               

               
Cow position:
               
chr18:51300340-51300629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
34, 123
               

               
Conread position:
               
4-284
               

               
Cow position:
               
chr18:51330928-51331210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
34, 87
               

               
Conread position:
               
35-235
               

               
Cow position:
               
chr18:52655927-52656119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
61, 7
               

               
Conread position:
               
38-283
               

               
Cow position:
               
chr18:41260280-41260516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
56, 80
               

               
Conread position:
               
38-289
               

               
Cow position:
               
chr18:14816336-14816582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
57, 78
               

               
Conread position:
               
42-242
               

               
Cow position:
               
chr18:18215890-18215694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
53, 76
               

               
Conread position:
               
42-283
               

               
Cow position:
               
chr18:902155-902393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
52, 72
               

               
Conread position:
               
56-283
               

               
Cow position:
               
chr18:18854567-18854790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
183, 63
               

               
Conread position:
               
145-351
               

               
Cow position:
               
chr18:14527143-14527348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
101, 35
               

               
Conread position:
               
2-250
               

               
Cow position:
               
chr19:15154831-15154585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
25, 51
               

               
Conread position:
               
3-284
               

               
Cow position:
               
chr19:48026193-48025920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
81, 30
               

               
Conread position:
               
12-338
               

               
Cow position:
               
chr19:4409542-4409872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
107, 5
               

               
Conread position:
               
34-242
               

               
Cow position:
               
chr19:2270176-2269976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
60, 8
               

               
Conread position:
               
34-242
               

               
Cow position:
               
chr19:4388708-4388908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
62, 8
               

               
Conread position:
               
35-236
               

               
Cow position:
               
chr19:1293477-1293669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
64, 7
               

               
Conread position:
               
39-280
               

               
Cow position:
               
chr19:18255164-18255389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
106, 44
               

               
Conread position:
               
49-263
               

               
Cow position:
               
chr19:35179771-35179561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
50, 64
               

               
Conread position:
               
111-284
               

               
Cow position:
               
chr19:55693206-55693029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
18, 53
               

               
Conread position:
               
126-302
               

               
Cow position:
               
chr19:5384625-5384801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
111, 158
               

               
Conread position:
               
3-310
               

               
Cow position:
               
chr2:73780291-73779977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
24, 117
               

               
Conread position:
               
4-284
               

               
Cow position:
               
chr2:3768931-3768653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
32, 112
               

               
Conread position:
               
5-284
               

               
Cow position:
               
chr2:39692523-39692799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
27, 62
               

               
Conread position:
               
10-240
               

               
Cow position:
               
chr2:42516501-42516277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
26, 109
               

               
Conread position:
               
17-243
               

               
Cow position:
               
chr2:62819929-62819709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
5, 102
               

               
Conread position:
               
31-283
               

               
Cow position:
               
chr2:64525069-64525315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
64, 58
               

               
Conread position:
               
35-236
               

               
Cow position:
               
chr2:279674-279481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
64, 7
               

               
Conread position:
               
35-236
               

               
Cow position:
               
chr2:2603233-2603429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
27, 7
               

               
Conread position:
               
35-242
               

               
Cow position:
               
chr2:29218535-29218734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
67, 7
               

               
Conread position:
               
35-304
               

               
Cow position:
               
chr2:43868403-43868666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
60, 84
               

               
Conread position:
               
39-252
               

               
Cow position:
               
chr2:2018138-2018344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
57, 79
               

               
Conread position:
               
42-250
               

               
Cow position:
               
chr2:44093943-44094146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
53, 76
               

               
Conread position:
               
42-250
               

               
Cow position:
               
chr2:85500888-85500680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
44, 86
               

               
Conread position:
               
42-252
               

               
Cow position:
               
chr2:46351499-46351294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
61, 76
               

               
Conread position:
               
42-283
               

               
Cow position:
               
chr2:432268-432036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
43, 70
               

               
Conread position:
               
42-294
               

               
Cow position:
               
chr2:53273942-53273685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
80, 60
               

               
Conread position:
               
43-283
               

               
Cow position:
               
chr2:57699516-57699752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
52, 75
               

               
Conread position:
               
67-282
               

               
Cow position:
               
chr2:77067149-77067360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
26, 51
               

               
Conread position:
               
72-284
               

               
Cow position:
               
chr2:29179703-29179501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
23, 50
               

               
Conread position:
               
112-302
               

               
Cow position:
               
chr2:59441184-59441381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
129-284
               

               
Cow position:
               
chr2:39606299-39606140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
157-340
               

               
Cow position:
               
chr2:39985189-39984999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
82, 169
               

               
Conread position:
               
3-354
               

               
Cow position:
               
chr20:3134738-3135104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
36, 124
               

               
Conread position:
               
35-236
               

               
Cow position:
               
chr20:22208711-22208903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
42-245
               

               
Cow position:
               
chr20:7810745-7810549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
53, 75
               

               
Conread position:
               
134-283
               

               
Cow position:
               
chr20:2782854-2782707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
136-284
               

               
Cow position:
               
chr20:25269192-25269042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
82, 48
               

               
Conread position:
               
2-242
               

               
Cow position:
               
chr21:13189093-13189334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
35, 66
               

               
Conread position:
               
2-284
               

               
Cow position:
               
chr21:21623438-21623722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
25, 88
               

               
Conread position:
               
2-284
               

               
Cow position:
               
chr21:32895061-32894779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
26, 81
               

               
Conread position:
               
2-284
               

               
Cow position:
               
chr21:40082696-40082981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
25, 123
               

               
Conread position:
               
35-236
               

               
Cow position:
               
chr21:1195738-1195930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
61, 7
               

               
Conread position:
               
35-236
               

               
Cow position:
               
chr21:33317167-33316974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
61, 7
               

               
Conread position:
               
35-242
               

               
Cow position:
               
chr21:30564953-30565152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
61, 7
               

               
Conread position:
               
42-236
               

               
Cow position:
               
chr21:17143894-17144080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
42-280
               

               
Cow position:
               
chr21:25475319-25475552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
20, 26
               

               
Conread position:
               
42-284
               

               
Cow position:
               
chr21:1263078-1263316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
53, 39
               

               
Conread position:
               
77-284
               

               
Cow position:
               
chr21:5088149-5088351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
22, 7
               

               
Conread position:
               
126-283
               

               
Cow position:
               
chr21:21478745-21478586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
1-282
               

               
Cow position:
               
chr22:41922320-41922592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
25, 87
               

               
Conread position:
               
3-239
               

               
Cow position:
               
chr22:33403673-33403438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
36, 123
               

               
Conread position:
               
30-349
               

               
Cow position:
               
chr22:8194337-8194644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
31, 40
               

               
Conread position:
               
34-245
               

               
Cow position:
               
chr22:46587021-46587226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
28, 8
               

               
Conread position:
               
35-236
               

               
Cow position:
               
chr22:6339680-6339872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
61, 15
               

               
Conread position:
               
35-236
               

               
Cow position:
               
chr22:28785146-28785338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
61, 7
               

               
Conread position:
               
35-236
               

               
Cow position:
               
chr22:32209633-32209830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
61, 7
               

               
Conread position:
               
35-246
               

               
Cow position:
               
chr22:18603785-18603580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
23, 7
               

               
Conread position:
               
75-283
               

               
Cow position:
               
chr22:10562742-10562947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
10, 44
               

               
Conread position:
               
125-252
               

               
Cow position:
               
chr22:13865644-13865516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
126-284
               

               
Cow position:
               
chr22:7231035-7231197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
2-263
               

               
Cow position:
               
chr23:36473347-36473600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
36, 117
               

               
Conread position:
               
2-283
               

               
Cow position:
               
chr23:35275211-35275491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
29, 20
               

               
Conread position:
               
3-284
               

               
Cow position:
               
chr23:40831179-40830902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
34, 65
               

               
Conread position:
               
33-245
               

               
Cow position:
               
chr23:30634577-30634371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
25, 9
               

               
Conread position:
               
41-284
               

               
Cow position:
               
chr23:9542812-9542573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
21, 27
               

               
Conread position:
               
42-254
               

               
Cow position:
               
chr23:20540846-20541055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
57, 76
               

               
Conread position:
               
44-284
               

               
Cow position:
               
chr23:250778-250547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
39, 59
               

               
Conread position:
               
35-236
               

               
Cow position:
               
chr24:22974919-22975113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
51, 7
               

               
Conread position:
               
42-284
               

               
Cow position:
               
chr24:24069995-24069762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
53, 42
               

               
Conread position:
               
132-289
               

               
Cow position:
               
chr24:19588047-19588204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
92, 120
               

               
Conread position:
               
149-285
               

               
Cow position:
               
chr24:19676552-19676689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
84, 25
               

               
Conread position:
               
2-283
               

               
Cow position:
               
chr25:24670800-24670511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
34, 125
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr25:30112742-30112463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
59, 13
               

               
Conread position:
               
28-284
               

               
Cow position:
               
chr25:32566668-32566915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
65, 102
               

               
Conread position:
               
29-227
               

               
Cow position:
               
chr25:30311923-30311733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
37, 33
               

               
Conread position:
               
35-236
               

               
Cow position:
               
chr25:13959880-13960069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
122, 7
               

               
Conread position:
               
35-236
               

               
Cow position:
               
chr25:26281834-26282027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
61, 7
               

               
Conread position:
               
38-284
               

               
Cow position:
               
chr25:23462192-23462429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
56, 45
               

               
Conread position:
               
39-262
               

               
Cow position:
               
chr25:30129009-30128789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
57, 78
               

               
Conread position:
               
42-273
               

               
Cow position:
               
chr25:2223001-2222775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
42, 20
               

               
Conread position:
               
42-284
               

               
Cow position:
               
chr25:383046-382807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
33, 79
               

               
Conread position:
               
42-285
               

               
Cow position:
               
chr25:13941923-13941683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
54, 76
               

               
Conread position:
               
126-284
               

               
Cow position:
               
chr25:19529162-19529324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
22, 27
               

               
Conread position:
               
3-242
               

               
Cow position:
               
chr26:21415540-21415300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
24, 52
               

               
Conread position:
               
28-284
               

               
Cow position:
               
chr26:16203943-16204192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
6, 12
               

               
Conread position:
               
35-236
               

               
Cow position:
               
chr26:14897066-14897259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
61, 32
               

               
Conread position:
               
42-236
               

               
Cow position:
               
chr26:1620722-1620913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
80, 57
               

               
Conread position:
               
126-283
               

               
Cow position:
               
chr26:19013010-19013169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
112, 65
               

               
Conread position:
               
126-353
               

               
Cow position:
               
chr26:9244545-9244782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
150-350
               

               
Cow position:
               
chr26:21807649-21807848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
136, 96
               

               
Conread position:
               
3-242
               

               
Cow position:
               
chr27:17568083-17568320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
26, 117
               

               
Conread position:
               
10-244
               

               
Cow position:
               
chr27:31249234-31249463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
23, 60
               

               
Conread position:
               
43-236
               

               
Cow position:
               
chr27:24296242-24296056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
53, 75
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr28:17249555-17249269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
35, 123
               

               
Conread position:
               
2-316
               

               
Cow position:
               
chr28:20630055-20629749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
33, 12
               

               
Conread position:
               
2-357
               

               
Cow position:
               
chr28:526364-526719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
33, 118
               

               
Conread position:
               
30-236
               

               
Cow position:
               
chr28:28184445-28184650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
55, 47
               

               
Conread position:
               
30-239
               

               
Cow position:
               
chr28:6842471-6842268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
32, 38
               

               
Conread position:
               
35-236
               

               
Cow position:
               
chr28:5940552-5940745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
61, 7
               

               
Conread position:
               
35-236
               

               
Cow position:
               
chr28:13463029-13463222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
23, 7
               

               
Conread position:
               
37-284
               

               
Cow position:
               
chr28:26984865-26984620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
45, 82
               

               
Conread position:
               
38-284
               

               
Cow position:
               
chr28:32198486-32198721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
200, 44
               

               
Conread position:
               
44-284
               

               
Cow position:
               
chr28:11256812-11256575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
51, 75
               

               
Conread position:
               
44-284
               

               
Cow position:
               
chr28:23916152-23916388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
202, 73
               

               
Conread position:
               
50-350
               

               
Cow position:
               
chr28:24172589-24172294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
215, 44
               

               
Conread position:
               
126-358
               

               
Cow position:
               
chr28:34840651-34840881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
54, 73
               

               
Conread position:
               
2-283
               

               
Cow position:
               
chr29:22285051-22285335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
18, 122
               

               
Conread position:
               
2-284
               

               
Cow position:
               
chr29:5340092-5339810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
34, 90
               

               
Conread position:
               
28-283
               

               
Cow position:
               
chr29:18266453-18266203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
67, 14
               

               
Conread position:
               
35-242
               

               
Cow position:
               
chr29:10820678-10820479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
59, 7
               

               
Conread position:
               
35-242
               

               
Cow position:
               
chr29:22279411-22279610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
61, 7
               

               
Conread position:
               
35-247
               

               
Cow position:
               
chr29:7812160-7811956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
61, 7
               

               
Conread position:
               
38-242
               

               
Cow position:
               
chr29:3548792-3548988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
57, 80
               

               
Conread position:
               
38-284
               

               
Cow position:
               
chr29:34121462-34121225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
24, 30
               

               
Conread position:
               
49-284
               

               
Cow position:
               
chr29:4489555-4489785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
46, 14
               

               
Conread position:
               
67-283
               

               
Cow position:
               
chr29:35260958-35261166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
28, 51
               

               
Conread position:
               
126-283
               

               
Cow position:
               
chr29:6536509-6536670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
2-282
               

               
Cow position:
               
chr3:19831242-19830959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
34, 88
               

               
Conread position:
               
3-242
               

               
Cow position:
               
chr3:58953070-58953306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
29, 120
               

               
Conread position:
               
3-284
               

               
Cow position:
               
chr3:44504634-44504349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
24, 121
               

               
Conread position:
               
10-284
               

               
Cow position:
               
chr3:10038117-10038388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
27, 86
               

               
Conread position:
               
28-284
               

               
Cow position:
               
chr3:8564119-8563867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
67, 91
               

               
Conread position:
               
30-317
               

               
Cow position:
               
chr3:51068957-51068672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
40, 32
               

               
Conread position:
               
35-236
               

               
Cow position:
               
chr3:72633023-72633217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
64, 83
               

               
Conread position:
               
38-241
               

               
Cow position:
               
chr3:61554727-61554532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
57, 80
               

               
Conread position:
               
38-244
               

               
Cow position:
               
chr3:26993079-26993278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
57, 73
               

               
Conread position:
               
38-284
               

               
Cow position:
               
chr3:16068985-16069228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
56, 80
               

               
Conread position:
               
39-245
               

               
Cow position:
               
chr3:11384271-11384471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
19, 29
               

               
Conread position:
               
42-236
               

               
Cow position:
               
chr3:75038885-75038698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
54, 76
               

               
Conread position:
               
42-237
               

               
Cow position:
               
chr3:57977591-57977402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
53, 76
               

               
Conread position:
               
44-247
               

               
Cow position:
               
chr3:37349194-37348998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
51, 74
               

               
Conread position:
               
49-254
               

               
Cow position:
               
chr3:58103547-58103756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
46, 115
               

               
Conread position:
               
73-284
               

               
Cow position:
               
chr3:74132964-74132758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
22, 45
               

               
Conread position:
               
126-355
               

               
Cow position:
               
chr3:18851993-18852235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
120, 42
               

               
Conread position:
               
25-237
               

               
Cow position:
               
chr4:62161428-62161223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
71, 93
               

               
Conread position:
               
29-242
               

               
Cow position:
               
chr4:12840690-12840896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
70, 89
               

               
Conread position:
               
35-236
               

               
Cow position:
               
chr4:36026514-36026322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
61, 7
               

               
Conread position:
               
35-242
               

               
Cow position:
               
chr4:34712573-34712772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
61, 7
               

               
Conread position:
               
49-315
               

               
Cow position:
               
chr4:13047906-13048165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
50, 28
               

               
Conread position:
               
76-284
               

               
Cow position:
               
chr4:37948141-37947938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
19, 42
               

               
Conread position:
               
125-350
               

               
Cow position:
               
chr4:54037068-54037295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
114, 171
               

               
Conread position:
               
2-284
               

               
Cow position:
               
chr5:19211937-19211662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
13, 68
               

               
Conread position:
               
2-285
               

               
Cow position:
               
chr5:26348673-26348400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
35, 87
               

               
Conread position:
               
28-349
               

               
Cow position:
               
chr5:16960570-16960254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
215, 55
               

               
Conread position:
               
35-236
               

               
Cow position:
               
chr5:14636722-14636529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
61, 7
               

               
Conread position:
               
35-245
               

               
Cow position:
               
chr5:55630920-55631124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
61, 32
               

               
Conread position:
               
42-246
               

               
Cow position:
               
chr5:12921260-12921459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
54, 76
               

               
Conread position:
               
42-250
               

               
Cow position:
               
chr5:31120344-31120140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
53, 76
               

               
Conread position:
               
42-267
               

               
Cow position:
               
chr5:10542808-10542592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
53, 77
               

               
Conread position:
               
67-281
               

               
Cow position:
               
chr5:28331733-28331526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
176, 15
               

               
Conread position:
               
68-284
               

               
Cow position:
               
chr5:70783992-70783781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
24, 46
               

               
Conread position:
               
70-283
               

               
Cow position:
               
chr5:55832948-55832735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
26, 48
               

               
Conread position:
               
126-349
               

               
Cow position:
               
chr5:62384332-62384562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
128-316
               

               
Cow position:
               
chr5:64587435-64587628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr6:52245464-52245704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
30, 66
               

               
Conread position:
               
2-284
               

               
Cow position:
               
chr6:30805918-30805625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
35, 90
               

               
Conread position:
               
7-284
               

               
Cow position:
               
chr6:6492386-6492116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
25, 48
               

               
Conread position:
               
17-242
               

               
Cow position:
               
chr6:705976-706192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
79, 19
               

               
Conread position:
               
23-251
               

               
Cow position:
               
chr6:44950478-44950254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
73, 95
               

               
Conread position:
               
25-353
               

               
Cow position:
               
chr6:7921053-7920733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
37, 63
               

               
Conread position:
               
35-234
               

               
Cow position:
               
chr6:20553245-20553055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
62, 7
               

               
Conread position:
               
35-245
               

               
Cow position:
               
chr6:39331536-39331334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
27, 7
               

               
Conread position:
               
35-257
               

               
Cow position:
               
chr6:27475407-27475622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
197, 15
               

               
Conread position:
               
35-284
               

               
Cow position:
               
chr6:14305619-14305863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
61, 7
               

               
Conread position:
               
42-236
               

               
Cow position:
               
chr6:34493676-34493863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
54, 75
               

               
Conread position:
               
42-242
               

               
Cow position:
               
chr6:41408406-41408599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
54, 76
               

               
Conread position:
               
42-242
               

               
Cow position:
               
chr6:43620732-43620925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
53, 76
               

               
Conread position:
               
42-246
               

               
Cow position:
               
chr6:6182707-6182510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
57, 76
               

               
Conread position:
               
28-284
               

               
Cow position:
               
chr7:48105108-48105358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
67, 90
               

               
Conread position:
               
29-284
               

               
Cow position:
               
chr7:3949503-3949743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
30-284
               

               
Cow position:
               
chr7:26021871-26022111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
35-244
               

               
Cow position:
               
chr7:38399937-38400138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
61, 15
               

               
Conread position:
               
36-244
               

               
Cow position:
               
chr7:2268286-2268496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
59, 15
               

               
Conread position:
               
38-279
               

               
Cow position:
               
chr7:46460604-46460840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
16, 27
               

               
Conread position:
               
42-236
               

               
Cow position:
               
chr7:21124577-21124390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
54, 76
               

               
Conread position:
               
126-284
               

               
Cow position:
               
chr7:34212757-34212918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
132-357
               

               
Cow position:
               
chr7:56092764-56092995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
117, 202
               

               
Conread position:
               
2-280
               

               
Cow position:
               
chr8:44050932-44051210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
26, 119
               

               
Conread position:
               
3-284
               

               
Cow position:
               
chr8:56255827-56256111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
24, 122
               

               
Conread position:
               
3-285
               

               
Cow position:
               
chr8:35444100-35443816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
29, 122
               

               
Conread position:
               
6-289
               

               
Cow position:
               
chr8:37169727-37169438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
26, 122
               

               
Conread position:
               
25-289
               

               
Cow position:
               
chr8:47652239-47651984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
70, 51
               

               
Conread position:
               
30-284
               

               
Cow position:
               
chr8:56481502-56481257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
66, 24
               

               
Conread position:
               
35-236
               

               
Cow position:
               
chr8:36333408-36333215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
61, 7
               

               
Conread position:
               
35-244
               

               
Cow position:
               
chr8:51674418-51674619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
61, 7
               

               
Conread position:
               
38-281
               

               
Cow position:
               
chr8:60647856-60648094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
44, 83
               

               
Conread position:
               
38-347
               

               
Cow position:
               
chr8:55605035-55605350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
39, 71
               

               
Conread position:
               
42-236
               

               
Cow position:
               
chr8:39740413-39740226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
53, 76
               

               
Conread position:
               
44-284
               

               
Cow position:
               
chr8:31569519-31569276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
55, 70
               

               
Conread position:
               
84-283
               

               
Cow position:
               
chr8:49602225-49602031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
11, 34
               

               
Conread position:
               
2-284
               

               
Cow position:
               
chr9:49618797-49619079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
37, 117
               

               
Conread position:
               
30-284
               

               
Cow position:
               
chr9:50063018-50062768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
65, 88
               

               
Conread position:
               
35-236
               

               
Cow position:
               
chr9:6252492-6252685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
18, 7
               

               
Conread position:
               
35-242
               

               
Cow position:
               
chr9:7059126-7058927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
61, 7
               

               
Conread position:
               
67-283
               

               
Cow position:
               
chr9:24886199-24885987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
156, 23
               

               
Conread position:
               
67-284
               

               
Cow position:
               
chr9:34250325-34250537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
35, 51
               

               
Conread position:
               
67-284
               

               
Cow position:
               
chr9:56561706-56561920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
28, 51
               

               
Conread position:
               
126-284
               

               
Cow position:
               
chr9:16011917-16011760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
126-284
               

               
Cow position:
               
chr9:51305621-51305463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
11, 123
               

               
Conread position:
               
2-283
               

               
Cow position:
               
chrX:2655507-2655787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
26, 118
               

               
Conread position:
               
2-284
               

               
Cow position:
               
chrX:39765354-39765635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
35, 81
               

               
Conread position:
               
2-349
               

               
Cow position:
               
chrX:23269396-23269042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
24, 121
               

               
Conread position:
               
3-287
               

               
Cow position:
               
chrX:23523000-23522726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
92, 28
               

               
Conread position:
               
3-358
               

               
Cow position:
               
chrX:37753219-37753582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
23, 118
               

               
Conread position:
               
4-270
               

               
Cow position:
               
chrX:18289289-18289024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
25, 53
               

               
Conread position:
               
7-283
               

               
Cow position:
               
chrX:5567226-5566957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
239, 28
               

               
Conread position:
               
9-284
               

               
Cow position:
               
chrX:48812158-48812437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
65, 7
               

               
Conread position:
               
23-284
               

               
Cow position:
               
chrX:15569057-15568800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
72, 63
               

               
Conread position:
               
25-272
               

               
Cow position:
               
chrX:33173334-33173087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
71, 61
               

               
Conread position:
               
26-236
               

               
Cow position:
               
chrX:23452624-23452422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
36, 16
               

               
Conread position:
               
27-286
               

               
Cow position:
               
chrX:25052098-25051841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
68, 24
               

               
Conread position:
               
30-235
               

               
Cow position:
               
chrX:15122333-15122137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
66, 12
               

               
Conread position:
               
35-236
               

               
Cow position:
               
chrX:11950938-11950745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
61, 15
               

               
Conread position:
               
35-241
               

               
Cow position:
               
chrX:30286238-30286436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
61, 7
               

               
Conread position:
               
35-247
               

               
Cow position:
               
chrX:2479796-2479592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
61, 15
               

               
Conread position:
               
38-275
               

               
Cow position:
               
chrX:15377826-15377599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
57, 13
               

               
Conread position:
               
38-284
               

               
Cow position:
               
chrX:21206855-21206613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
39, 22
               

               
Conread position:
               
39-284
               

               
Cow position:
               
chrX:21781169-21781408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
13, 45
               

               
Conread position:
               
42-284
               

               
Cow position:
               
chrX:13667132-13666890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
53, 22
               

               
Conread position:
               
70-303
               

               
Cow position:
               
chrX:21658416-21658640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
25, 33
               

               
Conread position:
               
126-349
               

               
Cow position:
               
chrX:23928239-23928014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
33, 112