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Cow genome map

           
Conread name:
           
OvF6-UMC-p6mm3-006-a01
        

               
Conread position:
               
1-357
               

               
Cow position:
               
chr10:8996259-8995911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
289, 255
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr10:8996426-8996137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
39, 30
               

               
Conread position:
               
2-323
               

               
Cow position:
               
chr10:8996594-8996271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
255, 0
               

               
Conread position:
               
2-360
               

               
Cow position:
               
chr10:8996678-8996320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
126, 133
               

               
Conread position:
               
3-290
               

               
Cow position:
               
chr10:8996845-8996557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
125, 136
               

               
Conread position:
               
64-354
               

               
Cow position:
               
chr10:9031309-9031600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
64, 71
               

               
Conread position:
               
1-255
               

               
Cow position:
               
chr11:74555022-74554768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-397
               

               
Cow position:
               
chr11:74554686-74554293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
135, 128
               

               
Conread position:
               
2-323
               

               
Cow position:
               
chr11:74554937-74554614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
244, 238
               

               
Conread position:
               
4-353
               

               
Cow position:
               
chr11:74555103-74554753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
125, 131
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr13:39984235-39984524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
124, 116
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr13:39984487-39984776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
134, 125
               

               
Conread position:
               
2-362
               

               
Cow position:
               
chr13:39984151-39984512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
132, 124
               

               
Conread position:
               
1-284
               

               
Cow position:
               
chr14:25895955-25896239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
150, 134
               

               
Conread position:
               
1-284
               

               
Cow position:
               
chr14:25910832-25911116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
127, 134
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chr14:3080509-3080219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
256, 0
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chr14:25860361-25860651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
149, 134
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chr14:25876656-25876946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
57, 63
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chr14:25877412-25877702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
149, 134
               

               
Conread position:
               
1-354
               

               
Cow position:
               
chr14:3100836-3100482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
253, 292
               

               
Conread position:
               
1-360
               

               
Cow position:
               
chr14:3127937-3127578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
21, 13
               

               
Conread position:
               
1-400
               

               
Cow position:
               
chr14:25836216-25836612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
256, 296
               

               
Conread position:
               
2-171
               

               
Cow position:
               
chr14:25837057-25837226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
2-255
               

               
Cow position:
               
chr14:3080760-3080507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
125, 133
               

               
Conread position:
               
2-284
               

               
Cow position:
               
chr14:3127768-3127485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
205, 200
               

               
Conread position:
               
2-284
               

               
Cow position:
               
chr14:25836385-25836668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
252, 0
               

               
Conread position:
               
2-284
               

               
Cow position:
               
chr14:25860194-25860477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
133, 126
               

               
Conread position:
               
2-284
               

               
Cow position:
               
chr14:25876825-25877108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
125, 133
               

               
Conread position:
               
2-285
               

               
Cow position:
               
chr14:25859438-25859722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
133, 125
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr14:3155411-3155700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
255, 0
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr14:25784186-25784475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
255, 0
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr14:25836469-25836758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
255, 0
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr14:25860110-25860399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
52, 61
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr14:25876573-25876862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
114, 120
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr14:25877161-25877450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
52, 61
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr14:25910917-25911206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
255, 0
               

               
Conread position:
               
2-296
               

               
Cow position:
               
chr14:25836553-25836849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
232, 219
               

               
Conread position:
               
2-322
               

               
Cow position:
               
chr14:25895788-25896110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
258, 0
               

               
Conread position:
               
2-353
               

               
Cow position:
               
chr14:25783766-25784118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
255, 299
               

               
Conread position:
               
2-397
               

               
Cow position:
               
chr14:25836805-25837197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
255, 325
               

               
Conread position:
               
3-284
               

               
Cow position:
               
chr14:25836134-25836416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
254, 0
               

               
Conread position:
               
3-397
               

               
Cow position:
               
chr14:25876490-25876881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
254, 324
               

               
Conread position:
               
17-290
               

               
Cow position:
               
chr14:3079989-3079715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
239, 0
               

               
Conread position:
               
2-323
               

               
Cow position:
               
chr16:14627331-14627008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
195, 175
               

               
Conread position:
               
2-397
               

               
Cow position:
               
chr16:14627163-14626771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
242, 235
               

               
Conread position:
               
17-290
               

               
Cow position:
               
chr16:14627232-14626958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
111, 118
               

               
Conread position:
               
1-323
               

               
Cow position:
               
chr17:22499394-22499070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
256, 300
               

               
Conread position:
               
1-362
               

               
Cow position:
               
chr17:22499142-22498780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
95, 81
               

               
Conread position:
               
2-284
               

               
Cow position:
               
chr17:22473420-22473703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
37, 30
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr17:22473336-22473625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
211, 217
               

               
Conread position:
               
2-294
               

               
Cow position:
               
chr17:22552514-22552220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
127, 145
               

               
Conread position:
               
2-362
               

               
Cow position:
               
chr17:22551842-22551481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
255, 325
               

               
Conread position:
               
3-284
               

               
Cow position:
               
chr17:22452377-22452096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
131, 8
               

               
Conread position:
               
17-290
               

               
Cow position:
               
chr17:22452028-22451754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
112, 118
               

               
Conread position:
               
1-187
               

               
Cow position:
               
chr18:43048642-43048456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chr18:56316135-56316346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr18:52428727-52428996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
205, 228
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr18:51789051-51788770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
206, 201
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr18:51812294-51812013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
128, 134
               

               
Conread position:
               
1-284
               

               
Cow position:
               
chr18:51400786-51401070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
127, 134
               

               
Conread position:
               
1-284
               

               
Cow position:
               
chr18:52448034-52448319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
124, 131
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chr18:41948842-41948552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
135, 127
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chr18:42792142-42792432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
256, 0
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chr18:42792394-42792684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
256, 0
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chr18:51766080-51765790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
256, 0
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chr18:52427971-52428261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
139, 128
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chr18:52428055-52428345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
55, 48
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chr18:52428223-52428513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
139, 128
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chr18:52428391-52428681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
256, 0
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chr18:52428559-52428849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
256, 0
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chr18:52433152-52433442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
125, 134
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chr18:52433320-52433610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
223, 216
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chr18:52433404-52433694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
139, 128
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chr18:52433488-52433778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
55, 49
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chr18:52433572-52433862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
256, 0
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chr18:52433740-52434030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
256, 0
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chr18:56329345-56329055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
214, 241
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chr18:52433908-52434201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
104, 110
               

               
Conread position:
               
1-297
               

               
Cow position:
               
chr18:52428139-52428436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
223, 216
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr18:33093020-33092722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
135, 129
               

               
Conread position:
               
1-323
               

               
Cow position:
               
chr18:42675235-42674911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
141, 128
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr18:33064096-33063769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
129, 134
               

               
Conread position:
               
1-354
               

               
Cow position:
               
chr18:56329261-56328907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
220, 228
               

               
Conread position:
               
1-360
               

               
Cow position:
               
chr18:33064852-33064493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
139, 130
               

               
Conread position:
               
1-397
               

               
Cow position:
               
chr18:52447278-52447671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
83, 94
               

               
Conread position:
               
2-178
               

               
Cow position:
               
chr18:40324125-40323949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
2-247
               

               
Cow position:
               
chr18:42984717-42984472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
134, 126
               

               
Conread position:
               
2-264
               

               
Cow position:
               
chr18:44397764-44397503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
140, 128
               

               
Conread position:
               
2-280
               

               
Cow position:
               
chr18:51752164-51751885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
43, 64
               

               
Conread position:
               
2-281
               

               
Cow position:
               
chr18:49032371-49032091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
127, 137
               

               
Conread position:
               
2-282
               

               
Cow position:
               
chr18:14453285-14453004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
39, 30
               

               
Conread position:
               
2-284
               

               
Cow position:
               
chr18:42675066-42674783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
258, 0
               

               
Conread position:
               
2-284
               

               
Cow position:
               
chr18:42827407-42827690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
131, 124
               

               
Conread position:
               
2-284
               

               
Cow position:
               
chr18:42960212-42959929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
39, 48
               

               
Conread position:
               
2-284
               

               
Cow position:
               
chr18:42984801-42984518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
131, 126
               

               
Conread position:
               
2-284
               

               
Cow position:
               
chr18:51368179-51367896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
124, 129
               

               
Conread position:
               
2-284
               

               
Cow position:
               
chr18:51789554-51789271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
124, 137
               

               
Conread position:
               
2-284
               

               
Cow position:
               
chr18:51839222-51838939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
126, 139
               

               
Conread position:
               
2-287
               

               
Cow position:
               
chr18:49032455-49032169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
126, 132
               

               
Conread position:
               
2-289
               

               
Cow position:
               
chr18:43048725-43048437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
204, 195
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr18:41197578-41197867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
39, 30
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr18:41198166-41198454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
125, 131
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr18:41198250-41198539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
126, 131
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr18:41949009-41948720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
126, 137
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr18:42791891-42792180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
255, 0
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr18:42837429-42837140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
126, 132
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr18:44154364-44154075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
136, 127
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr18:44398268-44397979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
255, 0
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr18:49022817-49023106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
51, 56
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr18:49032623-49032334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
255, 0
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr18:49033127-49032838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
131, 116
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr18:51400703-51400992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
205, 200
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr18:51812461-51812172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
126, 133
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr18:51812881-51812592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
38, 47
               

               
Conread position:
               
2-295
               

               
Cow position:
               
chr18:51400871-51401166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
125, 130
               

               
Conread position:
               
2-298
               

               
Cow position:
               
chr18:51400535-51400833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
205, 200
               

               
Conread position:
               
2-321
               

               
Cow position:
               
chr18:51812797-51812476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
126, 133
               

               
Conread position:
               
2-322
               

               
Cow position:
               
chr18:44240348-44240670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
252, 0
               

               
Conread position:
               
2-323
               

               
Cow position:
               
chr18:33064683-33064360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
53, 58
               

               
Conread position:
               
2-323
               

               
Cow position:
               
chr18:52447867-52448190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
126, 131
               

               
Conread position:
               
2-340
               

               
Cow position:
               
chr18:56329428-56329087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
126, 131
               

               
Conread position:
               
2-353
               

               
Cow position:
               
chr18:40324797-40324445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
131, 127
               

               
Conread position:
               
2-353
               

               
Cow position:
               
chr18:43022480-43022128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
255, 330
               

               
Conread position:
               
2-353
               

               
Cow position:
               
chr18:44398184-44397832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
255, 343
               

               
Conread position:
               
2-354
               

               
Cow position:
               
chr18:42675150-42674797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
132, 126
               

               
Conread position:
               
2-354
               

               
Cow position:
               
chr18:55066855-55066502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
126, 131
               

               
Conread position:
               
2-360
               

               
Cow position:
               
chr18:33064515-33064157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
226, 195
               

               
Conread position:
               
2-360
               

               
Cow position:
               
chr18:43175185-43174827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
255, 343
               

               
Conread position:
               
2-362
               

               
Cow position:
               
chr18:42675318-42674957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
134, 126
               

               
Conread position:
               
2-390
               

               
Cow position:
               
chr18:52447951-52448337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
255, 355
               

               
Conread position:
               
2-392
               

               
Cow position:
               
chr18:41197914-41198301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
123, 129
               

               
Conread position:
               
2-392
               

               
Cow position:
               
chr18:51368011-51367625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
226, 200
               

               
Conread position:
               
2-397
               

               
Cow position:
               
chr18:42744294-42743902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
255, 325
               

               
Conread position:
               
2-397
               

               
Cow position:
               
chr18:43093415-43093023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
213, 221
               

               
Conread position:
               
2-397
               

               
Cow position:
               
chr18:44398100-44397708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
134, 127
               

               
Conread position:
               
2-397
               

               
Cow position:
               
chr18:52447531-52447923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
255, 301
               

               
Conread position:
               
2-397
               

               
Cow position:
               
chr18:52447615-52448007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
255, 343
               

               
Conread position:
               
2-397
               

               
Cow position:
               
chr18:52447783-52448175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
255, 343
               

               
Conread position:
               
2-398
               

               
Cow position:
               
chr18:44398016-44397623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
126, 133
               

               
Conread position:
               
2-398
               

               
Cow position:
               
chr18:51368431-51368039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
255, 343
               

               
Conread position:
               
2-398
               

               
Cow position:
               
chr18:52447447-52447840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
126, 130
               

               
Conread position:
               
3-175
               

               
Cow position:
               
chr18:43119815-43119643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
125, 132
               

               
Conread position:
               
3-284
               

               
Cow position:
               
chr18:51368514-51368232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
254, 0
               

               
Conread position:
               
3-362
               

               
Cow position:
               
chr18:43093498-43093138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
125, 132
               

               
Conread position:
               
3-397
               

               
Cow position:
               
chr18:52447364-52447755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
260, 324
               

               
Conread position:
               
16-284
               

               
Cow position:
               
chr18:51752234-51751965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
189, 213
               

               
Conread position:
               
16-290
               

               
Cow position:
               
chr18:51969358-51969631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
112, 119
               

               
Conread position:
               
16-292
               

               
Cow position:
               
chr18:42674716-42674438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
38, 29
               

               
Conread position:
               
16-360
               

               
Cow position:
               
chr18:33093089-33092745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
111, 117
               

               
Conread position:
               
16-398
               

               
Cow position:
               
chr18:44398422-44398043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
238, 329
               

               
Conread position:
               
17-290
               

               
Cow position:
               
chr18:51400298-51400572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
111, 118
               

               
Conread position:
               
17-290
               

               
Cow position:
               
chr18:56494030-56494304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
240, 0
               

               
Conread position:
               
17-362
               

               
Cow position:
               
chr18:40075041-40075387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
248, 310
               

               
Conread position:
               
21-362
               

               
Cow position:
               
chr18:53586389-53586047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
108, 114
               

               
Conread position:
               
22-354
               

               
Cow position:
               
chr18:53559697-53560030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
35, 22
               

               
Conread position:
               
24-284
               

               
Cow position:
               
chr18:56247788-56247527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
233, 0
               

               
Conread position:
               
58-354
               

               
Cow position:
               
chr18:44398464-44398167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
41, 25
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chr19:23597199-23597489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
256, 0
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chr19:43570222-43569899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
132, 117
               

               
Conread position:
               
1-360
               

               
Cow position:
               
chr19:23614274-23614633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
253, 344
               

               
Conread position:
               
1-360
               

               
Cow position:
               
chr19:23614694-23615053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
256, 332
               

               
Conread position:
               
2-187
               

               
Cow position:
               
chr19:23597452-23597637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
133, 125
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr19:14940159-14940448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
6, 16
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr19:20677786-20678075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
218, 248
               

               
Conread position:
               
2-294
               

               
Cow position:
               
chr19:23613435-23613729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
255, 0
               

               
Conread position:
               
2-308
               

               
Cow position:
               
chr19:20678374-20678682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
134, 127
               

               
Conread position:
               
2-322
               

               
Cow position:
               
chr19:23597116-23597438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
133, 127
               

               
Conread position:
               
2-323
               

               
Cow position:
               
chr19:14940495-14940818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
255, 0
               

               
Conread position:
               
2-323
               

               
Cow position:
               
chr19:23597284-23597607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
126, 132
               

               
Conread position:
               
2-324
               

               
Cow position:
               
chr19:14960138-14959814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
198, 202
               

               
Conread position:
               
2-354
               

               
Cow position:
               
chr19:14940663-14941016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
255, 325
               

               
Conread position:
               
2-357
               

               
Cow position:
               
chr19:23649473-23649829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
134, 127
               

               
Conread position:
               
2-360
               

               
Cow position:
               
chr19:14940243-14940601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
252, 325
               

               
Conread position:
               
2-360
               

               
Cow position:
               
chr19:14940579-14940937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
263, 328
               

               
Conread position:
               
4-290
               

               
Cow position:
               
chr19:23614445-23614732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
131, 117
               

               
Conread position:
               
16-290
               

               
Cow position:
               
chr19:20678220-20678495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
241, 0
               

               
Conread position:
               
16-360
               

               
Cow position:
               
chr19:14940425-14940769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
110, 119
               

               
Conread position:
               
25-322
               

               
Cow position:
               
chr19:23650084-23650383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
111, 103
               

               
Conread position:
               
26-297
               

               
Cow position:
               
chr19:20677642-20677915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
234, 0
               

               
Conread position:
               
1-284
               

               
Cow position:
               
chr2:82800114-82800398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
259, 0
               

               
Conread position:
               
1-294
               

               
Cow position:
               
chr2:82799610-82799905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
116, 121
               

               
Conread position:
               
1-353
               

               
Cow position:
               
chr2:82799778-82800131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
259, 326
               

               
Conread position:
               
1-353
               

               
Cow position:
               
chr2:82799946-82800299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
125, 116
               

               
Conread position:
               
2-209
               

               
Cow position:
               
chr2:48689373-48689166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
128, 133
               

               
Conread position:
               
17-353
               

               
Cow position:
               
chr2:82799542-82799879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
239, 316
               

               
Conread position:
               
26-290
               

               
Cow position:
               
chr2:48689516-48689252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
231, 105
               

               
Conread position:
               
1-284
               

               
Cow position:
               
chr21:34223052-34222768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
128, 133
               

               
Conread position:
               
2-209
               

               
Cow position:
               
chr21:34222967-34222760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
126, 132
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chr22:12418943-12418653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
256, 0
               

               
Conread position:
               
1-321
               

               
Cow position:
               
chr22:11701353-11701675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
214, 226
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chr22:11640774-11641097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
40, 31
               

               
Conread position:
               
1-353
               

               
Cow position:
               
chr22:12431152-12430799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
126, 134
               

               
Conread position:
               
1-353
               

               
Cow position:
               
chr22:12432412-12432059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
124, 135
               

               
Conread position:
               
1-354
               

               
Cow position:
               
chr22:11640942-11641296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
213, 226
               

               
Conread position:
               
1-360
               

               
Cow position:
               
chr22:12476053-12475694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
211, 223
               

               
Conread position:
               
1-362
               

               
Cow position:
               
chr22:12399424-12399062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
127, 132
               

               
Conread position:
               
1-362
               

               
Cow position:
               
chr22:12499374-12499736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
124, 132
               

               
Conread position:
               
1-380
               

               
Cow position:
               
chr22:12458356-12457980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
127, 134
               

               
Conread position:
               
2-220
               

               
Cow position:
               
chr22:12499711-12499929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
2-263
               

               
Cow position:
               
chr22:12475548-12475286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
127, 133
               

               
Conread position:
               
2-268
               

               
Cow position:
               
chr22:12385161-12384895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
2-285
               

               
Cow position:
               
chr22:12430899-12430615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
145, 129
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr22:12399507-12399218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
252, 0
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr22:12476304-12476015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
127, 132
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr22:46654350-46654639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
123, 140
               

               
Conread position:
               
2-293
               

               
Cow position:
               
chr22:12498955-12499248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
126, 131
               

               
Conread position:
               
2-399
               

               
Cow position:
               
chr22:12431235-12430841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
218, 209
               

               
Conread position:
               
2-401
               

               
Cow position:
               
chr22:12385329-12384933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
48, 54
               

               
Conread position:
               
3-284
               

               
Cow position:
               
chr22:12475967-12475685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
125, 137
               

               
Conread position:
               
3-290
               

               
Cow position:
               
chr22:12498872-12499159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
124, 132
               

               
Conread position:
               
3-296
               

               
Cow position:
               
chr22:12499292-12499587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
125, 137
               

               
Conread position:
               
4-281
               

               
Cow position:
               
chr22:12399757-12399479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
253, 0
               

               
Conread position:
               
8-323
               

               
Cow position:
               
chr22:12399837-12399520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
246, 0
               

               
Conread position:
               
16-394
               

               
Cow position:
               
chr22:12475702-12475327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
110, 119
               

               
Conread position:
               
17-362
               

               
Cow position:
               
chr22:12476373-12476027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
110, 118
               

               
Conread position:
               
56-290
               

               
Cow position:
               
chr22:12385445-12385208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
37, 87
               

               
Conread position:
               
1-206
               

               
Cow position:
               
chr23:24654201-24654406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-251
               

               
Cow position:
               
chr23:24639804-24640054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
40, 31
               

               
Conread position:
               
1-255
               

               
Cow position:
               
chr23:25724043-25723789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
127, 134
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chr23:24626476-24626750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
6, 16
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chr23:24560386-24560097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
271, 257
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chr23:25660403-25660693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
127, 135
               

               
Conread position:
               
1-345
               

               
Cow position:
               
chr23:25698404-25698060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
57, 47
               

               
Conread position:
               
1-382
               

               
Cow position:
               
chr23:24560638-24560260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
133, 128
               

               
Conread position:
               
1-397
               

               
Cow position:
               
chr23:24560554-24560161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
253, 326
               

               
Conread position:
               
1-397
               

               
Cow position:
               
chr23:24560806-24560413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
256, 329
               

               
Conread position:
               
2-246
               

               
Cow position:
               
chr23:24546909-24546665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
2-251
               

               
Cow position:
               
chr23:25660488-25660737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
2-265
               

               
Cow position:
               
chr23:24654118-24654380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
249, 0
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr23:24639721-24640009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
126, 133
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr23:25626616-25626905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
129, 116
               

               
Conread position:
               
2-339
               

               
Cow position:
               
chr23:25626199-25626540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
254, 0
               

               
Conread position:
               
2-339
               

               
Cow position:
               
chr23:25626700-25627041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
247, 0
               

               
Conread position:
               
2-353
               

               
Cow position:
               
chr23:24547245-24546893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
255, 328
               

               
Conread position:
               
2-354
               

               
Cow position:
               
chr23:24626309-24626662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
39, 30
               

               
Conread position:
               
2-362
               

               
Cow position:
               
chr23:24522567-24522206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
134, 125
               

               
Conread position:
               
2-397
               

               
Cow position:
               
chr23:24547077-24546685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
258, 343
               

               
Conread position:
               
2-397
               

               
Cow position:
               
chr23:25626031-25626423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
40, 30
               

               
Conread position:
               
2-399
               

               
Cow position:
               
chr23:24639469-24639863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
124, 132
               

               
Conread position:
               
15-397
               

               
Cow position:
               
chr23:24547316-24546937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
242, 319
               

               
Conread position:
               
16-290
               

               
Cow position:
               
chr23:24654048-24654323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
238, 0
               

               
Conread position:
               
16-391
               

               
Cow position:
               
chr23:24560875-24560503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
112, 117
               

               
Conread position:
               
17-246
               

               
Cow position:
               
chr23:25698304-25698075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
189, 180
               

               
Conread position:
               
17-323
               

               
Cow position:
               
chr23:25626550-25626855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
110, 34
               

               
Conread position:
               
17-326
               

               
Cow position:
               
chr23:24560706-24560395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
111, 119
               

               
Conread position:
               
17-382
               

               
Cow position:
               
chr23:24639232-24639594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
72, 79
               

               
Conread position:
               
24-322
               

               
Cow position:
               
chr23:25660174-25660474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
187, 214
               

               
Conread position:
               
56-360
               

               
Cow position:
               
chr23:24626279-24626583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
72, 78
               

               
Conread position:
               
86-353
               

               
Cow position:
               
chr23:24654035-24654302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
42, 9
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr24:17035287-17035042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-255
               

               
Cow position:
               
chr24:17036463-17036209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 133
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chr24:17013247-17013522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
127, 134
               

               
Conread position:
               
1-353
               

               
Cow position:
               
chr24:17036547-17036194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
253, 329
               

               
Conread position:
               
1-362
               

               
Cow position:
               
chr24:17035791-17035429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
256, 326
               

               
Conread position:
               
1-403
               

               
Cow position:
               
chr24:17035203-17034813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
289, 263
               

               
Conread position:
               
2-284
               

               
Cow position:
               
chr24:17035538-17035255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
126, 133
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr24:17036126-17035837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
126, 132
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr24:17078093-17077805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
126, 133
               

               
Conread position:
               
2-323
               

               
Cow position:
               
chr24:17035370-17035047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
258, 0
               

               
Conread position:
               
2-323
               

               
Cow position:
               
chr24:17036210-17035887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 132
               

               
Conread position:
               
2-323
               

               
Cow position:
               
chr24:17036378-17036055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
255, 0
               

               
Conread position:
               
2-354
               

               
Cow position:
               
chr24:17070627-17070980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
255, 328
               

               
Conread position:
               
2-360
               

               
Cow position:
               
chr24:17077925-17077567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
126, 132
               

               
Conread position:
               
2-402
               

               
Cow position:
               
chr24:17036042-17035645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 132
               

               
Conread position:
               
2-402
               

               
Cow position:
               
chr24:17036294-17035897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
124, 116
               

               
Conread position:
               
2-403
               

               
Cow position:
               
chr24:17035622-17035224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
252, 331
               

               
Conread position:
               
16-290
               

               
Cow position:
               
chr24:17077995-17077720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
217, 210
               

               
Conread position:
               
16-339
               

               
Cow position:
               
chr24:17013178-17013505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
132, 121
               

               
Conread position:
               
26-290
               

               
Cow position:
               
chr24:17078153-17077888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
231, 0
               

               
Conread position:
               
96-397
               

               
Cow position:
               
chr24:17013174-17013472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
132, 116
               

               
Conread position:
               
1-179
               

               
Cow position:
               
chr25:33127969-33128146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
172, 0
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr25:33145181-33145426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
124, 132
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chr25:22235828-22236118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
256, 0
               

               
Conread position:
               
1-352
               

               
Cow position:
               
chr25:34769621-34769269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
256, 299
               

               
Conread position:
               
1-353
               

               
Cow position:
               
chr25:33157390-33157037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
256, 329
               

               
Conread position:
               
2-209
               

               
Cow position:
               
chr25:22235997-22236204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
128, 133
               

               
Conread position:
               
2-274
               

               
Cow position:
               
chr25:33157053-33156781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr25:33127886-33128175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
258, 271
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr25:33145098-33145387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
54, 43
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr25:33157137-33156848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
198, 208
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr25:34447022-34447311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
123, 131
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr25:34447190-34447479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
255, 0
               

               
Conread position:
               
2-291
               

               
Cow position:
               
chr25:23420551-23420841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
204, 195
               

               
Conread position:
               
2-323
               

               
Cow position:
               
chr25:366725-367048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
113, 120
               

               
Conread position:
               
2-341
               

               
Cow position:
               
chr25:34770040-34769699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
126, 133
               

               
Conread position:
               
2-385
               

               
Cow position:
               
chr25:34433524-34433901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
126, 81
               

               
Conread position:
               
2-396
               

               
Cow position:
               
chr25:34769872-34769481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
123, 131
               

               
Conread position:
               
2-399
               

               
Cow position:
               
chr25:33157221-33156827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
255, 293
               

               
Conread position:
               
8-289
               

               
Cow position:
               
chr25:34762835-34763117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
120, 127
               

               
Conread position:
               
16-290
               

               
Cow position:
               
chr25:23420481-23420756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
241, 0
               

               
Conread position:
               
16-360
               

               
Cow position:
               
chr25:33127732-33128076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
241, 314
               

               
Conread position:
               
17-322
               

               
Cow position:
               
chr25:33157458-33157151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
240, 0
               

               
Conread position:
               
24-397
               

               
Cow position:
               
chr25:34770102-34769732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
236, 303
               

               
Conread position:
               
26-290
               

               
Cow position:
               
chr25:326947-327212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
123, 100
               

               
Conread position:
               
16-290
               

               
Cow position:
               
chr27:21616008-21615734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
110, 62
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chr28:34696331-34696543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
150, 143
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chr28:9253270-9253560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
256, 0
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chr28:11334138-11333848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
117, 133
               

               
Conread position:
               
1-360
               

               
Cow position:
               
chr28:7810347-7810697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
297, 203
               

               
Conread position:
               
2-246
               

               
Cow position:
               
chr28:9253355-9253599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr28:7757920-7758209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
228, 219
               

               
Conread position:
               
2-362
               

               
Cow position:
               
chr28:9253187-9253548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
127, 133
               

               
Conread position:
               
2-380
               

               
Cow position:
               
chr28:11333885-11333510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
255, 325
               

               
Conread position:
               
16-323
               

               
Cow position:
               
chr28:11333703-11333400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
284, 195
               

               
Conread position:
               
16-353
               

               
Cow position:
               
chr28:7757514-7757852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
113, 119
               

               
Conread position:
               
17-265
               

               
Cow position:
               
chr28:33210327-33210575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
99, 116
               

               
Conread position:
               
24-253
               

               
Cow position:
               
chr29:39627486-39627257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr3:62721905-62721616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
39, 30
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr3:62742695-62742983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
187, 53
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr3:68045685-68045974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
132, 126
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr3:68045769-68046058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
142, 127
               

               
Conread position:
               
2-398
               

               
Cow position:
               
chr3:62722157-62721764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
40, 30
               

               
Conread position:
               
16-354
               

               
Cow position:
               
chr3:62722227-62721888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
236, 277
               

               
Conread position:
               
16-394
               

               
Cow position:
               
chr3:62722311-62721936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
238, 311
               

               
Conread position:
               
26-354
               

               
Cow position:
               
chr3:68027032-68027361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
231, 306
               

               
Conread position:
               
53-290
               

               
Cow position:
               
chr3:68026975-68027213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
16, 43
               

               
Conread position:
               
1-362
               

               
Cow position:
               
chr6:49340487-49340849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
256, 326
               

               
Conread position:
               
2-255
               

               
Cow position:
               
chr6:49340404-49340657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
2-269
               

               
Cow position:
               
chr6:49396377-49396645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
126, 131
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr6:49340656-49340945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
252, 0
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr6:49340824-49341113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
252, 0
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr6:49341076-49341365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
126, 139
               

               
Conread position:
               
2-297
               

               
Cow position:
               
chr6:49396461-49396758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
126, 131
               

               
Conread position:
               
2-353
               

               
Cow position:
               
chr6:49340740-49341092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
126, 133
               

               
Conread position:
               
5-353
               

               
Cow position:
               
chr6:49340912-49341260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
120, 11
               

               
Conread position:
               
16-284
               

               
Cow position:
               
chr6:49396727-49396996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
112, 119
               

               
Conread position:
               
25-398
               

               
Cow position:
               
chr6:49396232-49396602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
110, 104
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chr7:11600852-11600562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
256, 0
               

               
Conread position:
               
1-311
               

               
Cow position:
               
chr7:42879109-42878797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
124, 134
               

               
Conread position:
               
1-362
               

               
Cow position:
               
chr7:18390161-18390523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
131, 126
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr7:3179865-3180154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
50, 45
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr7:3180033-3180322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
205, 195
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr7:3180117-3180406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
252, 0
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr7:3180453-3180742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
39, 30
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr7:3180537-3180824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
39, 30
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr7:42878604-42878315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
123, 133
               

               
Conread position:
               
2-360
               

               
Cow position:
               
chr7:1014771-1015129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
255, 331
               

               
Conread position:
               
2-396
               

               
Cow position:
               
chr7:3180201-3180592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
255, 330
               

               
Conread position:
               
2-397
               

               
Cow position:
               
chr7:1014939-1015331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
126, 133
               

               
Conread position:
               
2-397
               

               
Cow position:
               
chr7:3179949-3180341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
219, 228
               

               
Conread position:
               
17-291
               

               
Cow position:
               
chr7:1014702-1014977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
22, 30
               

               
Conread position:
               
17-397
               

               
Cow position:
               
chr7:3179712-3180089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
195, 202
               

               
Conread position:
               
65-293
               

               
Cow position:
               
chr7:1440037-1440266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
23, 31
               

               
Conread position:
               
1-287
               

               
Cow position:
               
chr8:45201689-45201976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
257, 0
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chr8:45201017-45201306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
212, 233
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chr8:45201605-45201895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
205, 196
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chr8:46816296-46816586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
126, 132
               

               
Conread position:
               
1-323
               

               
Cow position:
               
chr8:45201437-45201761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
256, 0
               

               
Conread position:
               
1-384
               

               
Cow position:
               
chr8:48406707-48406327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
256, 326
               

               
Conread position:
               
2-276
               

               
Cow position:
               
chr8:48407042-48406767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
261, 0
               

               
Conread position:
               
2-280
               

               
Cow position:
               
chr8:48406538-48406259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
215, 222
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr8:48407210-48406921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
252, 0
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr8:55580990-55581279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
126, 133
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr8:55581074-55581363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
126, 132
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr8:55581158-55581447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
130, 126
               

               
Conread position:
               
2-323
               

               
Cow position:
               
chr8:48407546-48407223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
195, 202
               

               
Conread position:
               
3-357
               

               
Cow position:
               
chr8:48407123-48406770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
254, 12
               

               
Conread position:
               
8-290
               

               
Cow position:
               
chr8:45201360-45201643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
198, 189
               

               
Conread position:
               
24-295
               

               
Cow position:
               
chr8:48406936-48406663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
174, 195
               

               
Conread position:
               
54-290
               

               
Cow position:
               
chr8:46816685-46816922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
203, 0
               

               
Conread position:
               
1-361
               

               
Cow position:
               
chrX:25310141-25310501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
139, 127
               

               
Conread position:
               
2-354
               

               
Cow position:
               
chrX:29045092-29044739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
252, 298
               

               
Conread position:
               
16-290
               

               
Cow position:
               
chrX:25309736-25310011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
197, 218
               

               
Conread position:
               
17-290
               

               
Cow position:
               
chrX:13826933-13826659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
109, 124