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Cow genome map

           
Conread name:
           
Ova1-OVRM10024C02
        

               
Conread position:
               
1-94
               

               
Cow position:
               
chr10:43288048-43288140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
94
               

               
Alignm identity:
               
80
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-106
               

               
Cow position:
               
chr10:60237294-60237396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-108
               

               
Cow position:
               
chr10:11059617-11059512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-110
               

               
Cow position:
               
chr10:23912675-23912783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-110
               

               
Cow position:
               
chr10:69934956-69935064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-112
               

               
Cow position:
               
chr10:7304392-7304283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
1-113
               

               
Cow position:
               
chr10:20735529-20735417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-114
               

               
Cow position:
               
chr10:24096558-24096670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-114
               

               
Cow position:
               
chr10:25509520-25509408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-114
               

               
Cow position:
               
chr10:52569413-52569304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
1-114
               

               
Cow position:
               
chr10:57033968-57034081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
18, 78
               

               
Conread position:
               
1-115
               

               
Cow position:
               
chr10:10699689-10699802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-116
               

               
Cow position:
               
chr10:2449174-2449060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
1-116
               

               
Cow position:
               
chr10:26608067-26608181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-118
               

               
Cow position:
               
chr10:23872640-23872756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
1-118
               

               
Cow position:
               
chr10:58935372-58935484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
1-120
               

               
Cow position:
               
chr10:8923756-8923638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
1-121
               

               
Cow position:
               
chr10:58259694-58259813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
1-122
               

               
Cow position:
               
chr10:37529448-37529568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-124
               

               
Cow position:
               
chr10:34554267-34554389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-125
               

               
Cow position:
               
chr10:2407288-2407410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-126
               

               
Cow position:
               
chr10:6173181-6173054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr10:9576218-9576342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr10:24871706-24871584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr10:30352665-30352540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr10:39245086-39245212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr10:57457153-57457028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr10:61305102-61304978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
1-146
               

               
Cow position:
               
chr10:13765343-13765486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-150
               

               
Cow position:
               
chr10:37235732-37235878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr10:5886714-5886514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr10:5745142-5745389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
226, 84
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr10:65130841-65131095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
226, 76
               

               
Conread position:
               
2-105
               

               
Cow position:
               
chr10:49569025-49568922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
104
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
2-126
               

               
Cow position:
               
chr10:42745733-42745610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
3-114
               

               
Cow position:
               
chr10:52152342-52152232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
3-127
               

               
Cow position:
               
chr10:38014192-38014069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
3-250
               

               
Cow position:
               
chr10:48259414-48259674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
112, 29
               

               
Conread position:
               
4-106
               

               
Cow position:
               
chr10:58718471-58718369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
4-108
               

               
Cow position:
               
chr10:10752162-10752265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
4-108
               

               
Cow position:
               
chr10:28671004-28671108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
4-114
               

               
Cow position:
               
chr10:29166096-29165988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
4-115
               

               
Cow position:
               
chr10:2704043-2703931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
4-123
               

               
Cow position:
               
chr10:6642698-6642581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
4-124
               

               
Cow position:
               
chr10:15618990-15619108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
4-147
               

               
Cow position:
               
chr10:48369790-48369932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
4-232
               

               
Cow position:
               
chr10:52296315-52296089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
223, 74
               

               
Conread position:
               
4-238
               

               
Cow position:
               
chr10:49038380-49038134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
5-143
               

               
Cow position:
               
chr10:41151634-41151497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
5-216
               

               
Cow position:
               
chr10:16432490-16432689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
6-127
               

               
Cow position:
               
chr10:34175180-34175300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
6-250
               

               
Cow position:
               
chr10:15293087-15292854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
221, 45
               

               
Conread position:
               
6-250
               

               
Cow position:
               
chr10:30450243-30450483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
221, 35
               

               
Conread position:
               
12-120
               

               
Cow position:
               
chr10:42230475-42230368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
45-249
               

               
Cow position:
               
chr10:22905982-22906182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
41, 117
               

               
Conread position:
               
1-102
               

               
Cow position:
               
chr11:377822-377924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
1-107
               

               
Cow position:
               
chr11:77207875-77207770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-108
               

               
Cow position:
               
chr11:55117299-55117193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-112
               

               
Cow position:
               
chr11:29947100-29947210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-112
               

               
Cow position:
               
chr11:58990337-58990227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-113
               

               
Cow position:
               
chr11:50197618-50197729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-114
               

               
Cow position:
               
chr11:4323193-4323081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-114
               

               
Cow position:
               
chr11:6835355-6835242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
69, 78
               

               
Conread position:
               
1-114
               

               
Cow position:
               
chr11:36182515-36182403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-114
               

               
Cow position:
               
chr11:63065480-63065368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-118
               

               
Cow position:
               
chr11:1362654-1362769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
1-118
               

               
Cow position:
               
chr11:16251422-16251539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-120
               

               
Cow position:
               
chr11:31885347-31885227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
74, 110
               

               
Conread position:
               
1-120
               

               
Cow position:
               
chr11:37563294-37563176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
98, 25
               

               
Conread position:
               
1-122
               

               
Cow position:
               
chr11:7333895-7334015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
1-122
               

               
Cow position:
               
chr11:50778197-50778076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-123
               

               
Cow position:
               
chr11:7590017-7589896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
1-126
               

               
Cow position:
               
chr11:43646592-43646716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
103, 48
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr11:8828804-8828927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr11:30110794-30110673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr11:31873392-31873270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
1-142
               

               
Cow position:
               
chr11:10620499-10620639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
27, 35
               

               
Conread position:
               
1-146
               

               
Cow position:
               
chr11:1668504-1668357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
1-242
               

               
Cow position:
               
chr11:42003131-42003368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
172, 7
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr11:19508123-19507897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
227, 18
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr11:25165270-25165030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
162, 74
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr11:56654373-56654131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
226, 71
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr11:84531459-84531711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
143, 14
               

               
Conread position:
               
2-127
               

               
Cow position:
               
chr11:46580198-46580068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
8, 82
               

               
Conread position:
               
2-197
               

               
Cow position:
               
chr11:49148874-49148684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
155, 76
               

               
Conread position:
               
3-100
               

               
Cow position:
               
chr11:48932759-48932854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
98
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
3-124
               

               
Cow position:
               
chr11:9234452-9234333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
4-114
               

               
Cow position:
               
chr11:8988405-8988515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
21, 75
               

               
Conread position:
               
4-114
               

               
Cow position:
               
chr11:13191043-13190934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
4-127
               

               
Cow position:
               
chr11:50589910-50589789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
4-245
               

               
Cow position:
               
chr11:46772734-46772969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
35, 29
               

               
Conread position:
               
5-123
               

               
Cow position:
               
chr11:55333731-55333615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
5-134
               

               
Cow position:
               
chr11:9221903-9222031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
6-129
               

               
Cow position:
               
chr11:67600589-67600467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
6-250
               

               
Cow position:
               
chr11:18484338-18484580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
221, 72
               

               
Conread position:
               
6-272
               

               
Cow position:
               
chr11:20491393-20491129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
162, 71
               

               
Conread position:
               
7-127
               

               
Cow position:
               
chr11:70278754-70278874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
97, 71
               

               
Conread position:
               
8-127
               

               
Cow position:
               
chr11:63920470-63920586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
14-126
               

               
Cow position:
               
chr11:33526889-33526779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
1-100
               

               
Cow position:
               
chr12:6241116-6241018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
100
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-108
               

               
Cow position:
               
chr12:30170474-30170368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-110
               

               
Cow position:
               
chr12:3055944-3055835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-110
               

               
Cow position:
               
chr12:18123493-18123386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-112
               

               
Cow position:
               
chr12:41083872-41083763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
1-114
               

               
Cow position:
               
chr12:3160870-3160759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-114
               

               
Cow position:
               
chr12:31060176-31060288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-118
               

               
Cow position:
               
chr12:18769267-18769385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
1-120
               

               
Cow position:
               
chr12:7108995-7108877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-122
               

               
Cow position:
               
chr12:48415706-48415824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
1-124
               

               
Cow position:
               
chr12:21922242-21922121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
1-126
               

               
Cow position:
               
chr12:6410921-6411045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr12:12939123-12939248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
24, 78
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr12:14131937-14132182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
109, 77
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr12:30590583-30590327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
128, 77
               

               
Conread position:
               
2-120
               

               
Cow position:
               
chr12:6210351-6210468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
2-122
               

               
Cow position:
               
chr12:36977958-36978079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
8, 102
               

               
Conread position:
               
2-128
               

               
Cow position:
               
chr12:17031427-17031302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
8, 19
               

               
Conread position:
               
2-246
               

               
Cow position:
               
chr12:4190979-4190741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
225, 83
               

               
Conread position:
               
3-114
               

               
Cow position:
               
chr12:20316702-20316811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
4-116
               

               
Cow position:
               
chr12:47929019-47928907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr12:25455918-25455684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
222, 74
               

               
Conread position:
               
6-107
               

               
Cow position:
               
chr12:40270285-40270384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
102
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
8-120
               

               
Cow position:
               
chr12:44766884-44766772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
162-249
               

               
Cow position:
               
chr12:29484196-29484284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
89
               

               
Alignm identity:
               
77
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
1-100
               

               
Cow position:
               
chr13:38012501-38012599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
100
               

               
Alignm identity:
               
83
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-105
               

               
Cow position:
               
chr13:24376630-24376733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-106
               

               
Cow position:
               
chr13:36264104-36264208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-108
               

               
Cow position:
               
chr13:8362606-8362500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-108
               

               
Cow position:
               
chr13:37516996-37516890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-110
               

               
Cow position:
               
chr13:38277997-38277889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-111
               

               
Cow position:
               
chr13:44323042-44323152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-112
               

               
Cow position:
               
chr13:15172267-15172157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-114
               

               
Cow position:
               
chr13:21287950-21287838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-114
               

               
Cow position:
               
chr13:33256636-33256748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-114
               

               
Cow position:
               
chr13:34508017-34508128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
1-114
               

               
Cow position:
               
chr13:48629130-48629242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-114
               

               
Cow position:
               
chr13:58043769-58043880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-115
               

               
Cow position:
               
chr13:23270073-23269960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-117
               

               
Cow position:
               
chr13:19555892-19556007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-122
               

               
Cow position:
               
chr13:25261668-25261547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-123
               

               
Cow position:
               
chr13:9974928-9974810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-124
               

               
Cow position:
               
chr13:14104702-14104582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
1-124
               

               
Cow position:
               
chr13:57227848-57227970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-126
               

               
Cow position:
               
chr13:11316416-11316293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr13:25926932-25927057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr13:30693840-30693966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
8, 84
               

               
Conread position:
               
1-132
               

               
Cow position:
               
chr13:4664722-4664591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-142
               

               
Cow position:
               
chr13:5619484-5619625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
85, 34
               

               
Conread position:
               
1-142
               

               
Cow position:
               
chr13:48251852-48251712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
1-239
               

               
Cow position:
               
chr13:9107717-9107944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
226, 82
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr13:14063384-14063154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
226, 73
               

               
Conread position:
               
2-125
               

               
Cow position:
               
chr13:43629637-43629517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
8, 78
               

               
Conread position:
               
2-178
               

               
Cow position:
               
chr13:9246855-9247030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
2-250
               

               
Cow position:
               
chr13:9570129-9570361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
225, 17
               

               
Conread position:
               
2-250
               

               
Cow position:
               
chr13:22780087-22780333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
168, 76
               

               
Conread position:
               
2-266
               

               
Cow position:
               
chr13:15974749-15975023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
8, 86
               

               
Conread position:
               
3-114
               

               
Cow position:
               
chr13:20605977-20605867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
4-106
               

               
Cow position:
               
chr13:52284052-52284153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
4-114
               

               
Cow position:
               
chr13:32949860-32949751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
4-115
               

               
Cow position:
               
chr13:1011475-1011585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
5-112
               

               
Cow position:
               
chr13:9900446-9900553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
6-127
               

               
Cow position:
               
chr13:53012241-53012122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
34-246
               

               
Cow position:
               
chr13:9665248-9665451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
193, 44
               

               
Conread position:
               
38-250
               

               
Cow position:
               
chr13:606878-606666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
126, 11
               

               
Conread position:
               
43-250
               

               
Cow position:
               
chr13:53069647-53069843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
184, 41
               

               
Conread position:
               
1-98
               

               
Cow position:
               
chr14:45068889-45068793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
98
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-105
               

               
Cow position:
               
chr14:21201634-21201529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
1-106
               

               
Cow position:
               
chr14:25403746-25403642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
1-107
               

               
Cow position:
               
chr14:36585761-36585656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-109
               

               
Cow position:
               
chr14:21357750-21357857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-110
               

               
Cow position:
               
chr14:13634508-13634400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-114
               

               
Cow position:
               
chr14:106377-106265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-114
               

               
Cow position:
               
chr14:7317034-7317146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-114
               

               
Cow position:
               
chr14:7558233-7558122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
1-114
               

               
Cow position:
               
chr14:13723401-13723289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-114
               

               
Cow position:
               
chr14:18485043-18484931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-119
               

               
Cow position:
               
chr14:15032953-15033071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-122
               

               
Cow position:
               
chr14:19624288-19624409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
116, 77
               

               
Conread position:
               
1-124
               

               
Cow position:
               
chr14:24581122-24581243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr14:5630359-5630486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr14:8488382-8488507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
24, 78
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr14:14280618-14280740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr14:19957713-19957588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr14:25231451-25231325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
122, 77
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr14:44878587-44878463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
1-136
               

               
Cow position:
               
chr14:28605375-28605508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
1-142
               

               
Cow position:
               
chr14:33209161-33209021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-150
               

               
Cow position:
               
chr14:14187531-14187677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-184
               

               
Cow position:
               
chr14:12559287-12559105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
100, 77
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr14:19850834-19850629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
98, 77
               

               
Conread position:
               
1-206
               

               
Cow position:
               
chr14:37333889-37334094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
162, 77
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr14:26108839-26109084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
129, 10
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr14:36709321-36709577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
101, 82
               

               
Conread position:
               
1-255
               

               
Cow position:
               
chr14:43032006-43032241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
226, 41
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chr14:12856794-12857060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
103, 85
               

               
Conread position:
               
2-114
               

               
Cow position:
               
chr14:17755757-17755869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
2-250
               

               
Cow position:
               
chr14:41329331-41329077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
128, 30
               

               
Conread position:
               
3-112
               

               
Cow position:
               
chr14:6490504-6490396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
4-112
               

               
Cow position:
               
chr14:18811918-18811811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
4-150
               

               
Cow position:
               
chr14:41128094-41128236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
6-108
               

               
Cow position:
               
chr14:41211059-41211161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
37-256
               

               
Cow position:
               
chr14:36289582-36289357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
112, 47
               

               
Conread position:
               
1-110
               

               
Cow position:
               
chr15:6905785-6905894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-110
               

               
Cow position:
               
chr15:25208521-25208412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-113
               

               
Cow position:
               
chr15:23703017-23703128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-113
               

               
Cow position:
               
chr15:32979790-32979679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-114
               

               
Cow position:
               
chr15:21832180-21832068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-118
               

               
Cow position:
               
chr15:37985316-37985201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-120
               

               
Cow position:
               
chr15:22168302-22168420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-124
               

               
Cow position:
               
chr15:1297981-1298102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
1-124
               

               
Cow position:
               
chr15:29604472-29604349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
100, 26
               

               
Conread position:
               
1-126
               

               
Cow position:
               
chr15:9062350-9062226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr15:11658321-11658195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
107, 77
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr15:14020716-14020840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr15:32287513-32287389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr15:45323028-45323152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
1-147
               

               
Cow position:
               
chr15:6491345-6491200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
1-150
               

               
Cow position:
               
chr15:4535151-4535299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr15:12316168-12316399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
226, 77
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr15:23768019-23767790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
226, 12
               

               
Conread position:
               
2-120
               

               
Cow position:
               
chr15:20486974-20486855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
8, 78
               

               
Conread position:
               
4-106
               

               
Cow position:
               
chr15:7430228-7430329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
6-118
               

               
Cow position:
               
chr15:13285283-13285394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
6-250
               

               
Cow position:
               
chr15:38883405-38883650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
145, 72
               

               
Conread position:
               
8-127
               

               
Cow position:
               
chr15:49279706-49279823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
8-142
               

               
Cow position:
               
chr15:17100463-17100332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
14-126
               

               
Cow position:
               
chr15:31085791-31085902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
18-250
               

               
Cow position:
               
chr15:20482576-20482348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
209, 60
               

               
Conread position:
               
33-255
               

               
Cow position:
               
chr15:14337483-14337695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
194, 16
               

               
Conread position:
               
34-127
               

               
Cow position:
               
chr15:286735-286827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
94
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
108-248
               

               
Cow position:
               
chr15:16515966-16515830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
119, 50
               

               
Conread position:
               
1-98
               

               
Cow position:
               
chr16:38905381-38905477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
98
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-100
               

               
Cow position:
               
chr16:43804342-43804244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
100
               

               
Alignm identity:
               
83
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-106
               

               
Cow position:
               
chr16:35188099-35187996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-107
               

               
Cow position:
               
chr16:9933004-9932896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
58, 14
               

               
Conread position:
               
1-108
               

               
Cow position:
               
chr16:17745680-17745573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-108
               

               
Cow position:
               
chr16:50417842-50417949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-110
               

               
Cow position:
               
chr16:51399901-51400009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-114
               

               
Cow position:
               
chr16:820096-819984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-114
               

               
Cow position:
               
chr16:8807246-8807357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
1-117
               

               
Cow position:
               
chr16:52218934-52218819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-118
               

               
Cow position:
               
chr16:48006646-48006761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-120
               

               
Cow position:
               
chr16:33405912-33406030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-122
               

               
Cow position:
               
chr16:18205816-18205696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-123
               

               
Cow position:
               
chr16:11082786-11082668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
11, 63
               

               
Conread position:
               
1-126
               

               
Cow position:
               
chr16:46434274-46434395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
1-126
               

               
Cow position:
               
chr16:53613143-53613020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr16:22842208-22842333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr16:23025186-23025066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr16:41752728-41752853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr16:50934289-50934413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr16:55586755-55586881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-147
               

               
Cow position:
               
chr16:8366979-8367125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-219
               

               
Cow position:
               
chr16:47518695-47518474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
103, 76
               

               
Conread position:
               
1-242
               

               
Cow position:
               
chr16:13043640-13043399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
127, 71
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr16:27005043-27004798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
117, 14
               

               
Conread position:
               
2-133
               

               
Cow position:
               
chr16:4979655-4979530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
2-250
               

               
Cow position:
               
chr16:14242222-14241991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
8, 128
               

               
Conread position:
               
3-108
               

               
Cow position:
               
chr16:34168438-34168334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
3-114
               

               
Cow position:
               
chr16:18036809-18036699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
3-114
               

               
Cow position:
               
chr16:29380097-29379987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
4-114
               

               
Cow position:
               
chr16:4972183-4972292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
4-245
               

               
Cow position:
               
chr16:50519577-50519351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
223, 30
               

               
Conread position:
               
6-118
               

               
Cow position:
               
chr16:13307026-13307134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
6-242
               

               
Cow position:
               
chr16:23681212-23680987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
221, 78
               

               
Conread position:
               
14-267
               

               
Cow position:
               
chr16:48145566-48145818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
17, 71
               

               
Conread position:
               
38-250
               

               
Cow position:
               
chr16:3821009-3820805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
24, 47
               

               
Conread position:
               
1-100
               

               
Cow position:
               
chr17:18592326-18592227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
100
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-108
               

               
Cow position:
               
chr17:13922361-13922253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
1-113
               

               
Cow position:
               
chr17:16117542-16117654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-113
               

               
Cow position:
               
chr17:21806916-21807030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
1-114
               

               
Cow position:
               
chr17:21335812-21335924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-114
               

               
Cow position:
               
chr17:27679358-27679470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-115
               

               
Cow position:
               
chr17:6936778-6936891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
1-116
               

               
Cow position:
               
chr17:7760576-7760691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
15, 78
               

               
Conread position:
               
1-116
               

               
Cow position:
               
chr17:37163641-37163755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-124
               

               
Cow position:
               
chr17:5767800-5767678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-126
               

               
Cow position:
               
chr17:8690556-8690678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
1-126
               

               
Cow position:
               
chr17:17406024-17405900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr17:1358913-1359036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr17:6624144-6624013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
91, 77
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr17:7810852-7810978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
15, 78
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr17:11832253-11832375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr17:15376209-15376083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
115, 77
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr17:21312919-21313040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr17:32554140-32554262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr17:36817827-36817703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
1-132
               

               
Cow position:
               
chr17:38116297-38116168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
1-150
               

               
Cow position:
               
chr17:15333825-15333973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
117, 77
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chr17:14088441-14088652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr17:24787135-24787377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
226, 83
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr17:24587504-24587254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
169, 77
               

               
Conread position:
               
2-114
               

               
Cow position:
               
chr17:38832927-38832816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
2-115
               

               
Cow position:
               
chr17:3781930-3781818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
2-132
               

               
Cow position:
               
chr17:31232045-31232174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
2-221
               

               
Cow position:
               
chr17:27274447-27274223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
100, 82
               

               
Conread position:
               
4-106
               

               
Cow position:
               
chr17:21739001-21739102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
4-114
               

               
Cow position:
               
chr17:1493273-1493382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
4-125
               

               
Cow position:
               
chr17:34316826-34316945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
4-138
               

               
Cow position:
               
chr17:12220055-12220188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
4-185
               

               
Cow position:
               
chr17:30999658-30999485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
6-100
               

               
Cow position:
               
chr17:11101913-11102006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
95
               

               
Alignm identity:
               
80
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
6-127
               

               
Cow position:
               
chr17:23680865-23680745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
14-127
               

               
Cow position:
               
chr17:5745370-5745482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
16-248
               

               
Cow position:
               
chr17:36791010-36790793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
146, 48
               

               
Conread position:
               
19-156
               

               
Cow position:
               
chr17:9778119-9777984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
1-112
               

               
Cow position:
               
chr18:22121068-22121179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
14, 78
               

               
Conread position:
               
1-114
               

               
Cow position:
               
chr18:48407602-48407490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-116
               

               
Cow position:
               
chr18:15025491-15025378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
1-126
               

               
Cow position:
               
chr18:39115331-39115455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr18:5647059-5646938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
1-142
               

               
Cow position:
               
chr18:43114107-43114247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-146
               

               
Cow position:
               
chr18:20127290-20127435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
98, 77
               

               
Conread position:
               
1-147
               

               
Cow position:
               
chr18:11166792-11166647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-149
               

               
Cow position:
               
chr18:47868268-47868121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-200
               

               
Cow position:
               
chr18:20271207-20271405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
1-248
               

               
Cow position:
               
chr18:11680533-11680301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
226, 83
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr18:36264974-36265203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr18:36478008-36477761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
162, 71
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr18:33157634-33157378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
226, 77
               

               
Conread position:
               
1-272
               

               
Cow position:
               
chr18:23424738-23424468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
90, 20
               

               
Conread position:
               
2-119
               

               
Cow position:
               
chr18:11262771-11262655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
2-216
               

               
Cow position:
               
chr18:47931047-47931256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
12, 77
               

               
Conread position:
               
2-250
               

               
Cow position:
               
chr18:42060891-42060642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
83, 227
               

               
Conread position:
               
2-255
               

               
Cow position:
               
chr18:51271927-51272179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
36, 83
               

               
Conread position:
               
3-124
               

               
Cow position:
               
chr18:52632593-52632714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
4-124
               

               
Cow position:
               
chr18:25647440-25647558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
5-127
               

               
Cow position:
               
chr18:24977542-24977663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
101, 73
               

               
Conread position:
               
6-126
               

               
Cow position:
               
chr18:51211990-51211871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
52, 78
               

               
Conread position:
               
69-248
               

               
Cow position:
               
chr18:11166696-11166518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
158, 34
               

               
Conread position:
               
75-238
               

               
Cow position:
               
chr18:4602449-4602609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
155, 36
               

               
Conread position:
               
1-96
               

               
Cow position:
               
chr19:55247460-55247365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
96
               

               
Alignm identity:
               
80
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-114
               

               
Cow position:
               
chr19:24144851-24144740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-114
               

               
Cow position:
               
chr19:39661710-39661822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-116
               

               
Cow position:
               
chr19:22423154-22423267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
1-116
               

               
Cow position:
               
chr19:35741992-35741877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-117
               

               
Cow position:
               
chr19:20432944-20433059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-120
               

               
Cow position:
               
chr19:9294103-9293986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
1-121
               

               
Cow position:
               
chr19:19173952-19173833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-122
               

               
Cow position:
               
chr19:9583149-9583029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-122
               

               
Cow position:
               
chr19:39360973-39360854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
1-126
               

               
Cow position:
               
chr19:14347846-14347720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr19:5648817-5648942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr19:27612334-27612458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr19:36059766-36059641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr19:11376571-11376800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
226, 77
               

               
Conread position:
               
1-247
               

               
Cow position:
               
chr19:19924770-19925006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
226, 61
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr19:19661876-19661628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
170, 83
               

               
Conread position:
               
1-272
               

               
Cow position:
               
chr19:43418252-43417987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
226, 68
               

               
Conread position:
               
2-126
               

               
Cow position:
               
chr19:41024062-41023939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
9, 26
               

               
Conread position:
               
2-250
               

               
Cow position:
               
chr19:7492274-7492041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
15, 76
               

               
Conread position:
               
3-121
               

               
Cow position:
               
chr19:46454682-46454566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
3-124
               

               
Cow position:
               
chr19:36845080-36844961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
4-114
               

               
Cow position:
               
chr19:21042949-21042839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
12, 75
               

               
Conread position:
               
7-98
               

               
Cow position:
               
chr19:38601094-38601184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
92
               

               
Alignm identity:
               
79
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
7-114
               

               
Cow position:
               
chr19:23786017-23785910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
29-250
               

               
Cow position:
               
chr19:42215917-42215710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
135, 55
               

               
Conread position:
               
32-250
               

               
Cow position:
               
chr19:37110128-37110328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
106-327
               

               
Cow position:
               
chr19:3812569-3812789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
40, 148
               

               
Conread position:
               
1-99
               

               
Cow position:
               
chr20:9379297-9379200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
99
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-106
               

               
Cow position:
               
chr20:22235203-22235098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-114
               

               
Cow position:
               
chr20:12441804-12441915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
1-114
               

               
Cow position:
               
chr20:12996120-12996233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-115
               

               
Cow position:
               
chr20:11614155-11614268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
1-116
               

               
Cow position:
               
chr20:14831724-14831839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
65, 78
               

               
Conread position:
               
1-120
               

               
Cow position:
               
chr20:1139885-1140003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-126
               

               
Cow position:
               
chr20:18551250-18551127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
1-126
               

               
Cow position:
               
chr20:29844943-29844819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr20:12420733-12420858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr20:14572468-14572593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr20:14735564-14735440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-147
               

               
Cow position:
               
chr20:382239-382384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
1-242
               

               
Cow position:
               
chr20:23505716-23505497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
226, 77
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr20:9006656-9006902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
161, 82
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr20:10575904-10576145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
226, 77
               

               
Conread position:
               
2-106
               

               
Cow position:
               
chr20:16291359-16291255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
2-116
               

               
Cow position:
               
chr20:4621452-4621565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
2-247
               

               
Cow position:
               
chr20:34777073-34776825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
100, 76
               

               
Conread position:
               
6-124
               

               
Cow position:
               
chr20:4205846-4205729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
8-114
               

               
Cow position:
               
chr20:32847234-32847128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
14-127
               

               
Cow position:
               
chr20:7442248-7442361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
55, 64
               

               
Conread position:
               
14-250
               

               
Cow position:
               
chr20:22007379-22007140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
145, 61
               

               
Conread position:
               
34-127
               

               
Cow position:
               
chr20:11975249-11975344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
96
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
35-237
               

               
Cow position:
               
chr20:37028625-37028418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
47, 19
               

               
Conread position:
               
1-106
               

               
Cow position:
               
chr21:18568741-18568846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-110
               

               
Cow position:
               
chr21:31691387-31691278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-112
               

               
Cow position:
               
chr21:38121016-38120906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-114
               

               
Cow position:
               
chr21:4279541-4279429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-114
               

               
Cow position:
               
chr21:5153526-5153414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-114
               

               
Cow position:
               
chr21:17282612-17282500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-114
               

               
Cow position:
               
chr21:24858220-24858108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-114
               

               
Cow position:
               
chr21:27124220-27124331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
1-114
               

               
Cow position:
               
chr21:30257795-30257907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-114
               

               
Cow position:
               
chr21:31278688-31278576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
1-114
               

               
Cow position:
               
chr21:47802351-47802463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-115
               

               
Cow position:
               
chr21:45473848-45473962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-118
               

               
Cow position:
               
chr21:9710794-9710911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-120
               

               
Cow position:
               
chr21:23586785-23586667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-124
               

               
Cow position:
               
chr21:30607179-30607298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-126
               

               
Cow position:
               
chr21:5137581-5137705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
88, 77
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr21:1058985-1058861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr21:14464485-14464361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr21:24765197-24765068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
45, 87
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr21:46132069-46132194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-136
               

               
Cow position:
               
chr21:21000117-21000251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
24, 39
               

               
Conread position:
               
1-153
               

               
Cow position:
               
chr21:45355745-45355596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chr21:14452145-14451926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
52, 37
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr21:29484892-29484658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
183, 77
               

               
Conread position:
               
1-249
               

               
Cow position:
               
chr21:38908480-38908250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
226, 82
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr21:12801838-12802076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
162, 70
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr21:28944455-28944701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
226, 77
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr21:34835517-34835751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
206, 54
               

               
Conread position:
               
2-100
               

               
Cow position:
               
chr21:15445171-15445268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
99
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
2-114
               

               
Cow position:
               
chr21:42414195-42414305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
2-127
               

               
Cow position:
               
chr21:24598569-24598443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
3-126
               

               
Cow position:
               
chr21:6051413-6051291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
6-116
               

               
Cow position:
               
chr21:18828406-18828514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
8-127
               

               
Cow position:
               
chr21:29002260-29002378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
10-271
               

               
Cow position:
               
chr21:28955425-28955164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
18, 77
               

               
Conread position:
               
16-248
               

               
Cow position:
               
chr21:21143775-21143545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
211, 68
               

               
Conread position:
               
155-265
               

               
Cow position:
               
chr21:4585548-4585661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
1-97
               

               
Cow position:
               
chr22:40121036-40121132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
97
               

               
Alignm identity:
               
83
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-100
               

               
Cow position:
               
chr22:39494361-39494460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
100
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-106
               

               
Cow position:
               
chr22:40374448-40374344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
1-110
               

               
Cow position:
               
chr22:11987375-11987483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-110
               

               
Cow position:
               
chr22:26141114-26141008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-112
               

               
Cow position:
               
chr22:898599-898488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
48, 78
               

               
Conread position:
               
1-112
               

               
Cow position:
               
chr22:9977661-9977552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-112
               

               
Cow position:
               
chr22:28071396-28071286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-112
               

               
Cow position:
               
chr22:28120633-28120523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-114
               

               
Cow position:
               
chr22:3842469-3842356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-114
               

               
Cow position:
               
chr22:23856890-23856778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-116
               

               
Cow position:
               
chr22:33985924-33986037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-119
               

               
Cow position:
               
chr22:4563204-4563087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-121
               

               
Cow position:
               
chr22:19787837-19787956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
15, 78
               

               
Conread position:
               
1-122
               

               
Cow position:
               
chr22:13720682-13720803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
41, 84
               

               
Conread position:
               
1-124
               

               
Cow position:
               
chr22:28058202-28058321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr22:845744-845620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr22:22612954-22612828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr22:25311704-25311829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
1-142
               

               
Cow position:
               
chr22:44924220-44924360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-143
               

               
Cow position:
               
chr22:25341862-25341721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-178
               

               
Cow position:
               
chr22:16263865-16263685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
112, 83
               

               
Conread position:
               
1-242
               

               
Cow position:
               
chr22:534335-534079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
121, 77
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr22:44390037-44390277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
226, 83
               

               
Conread position:
               
1-249
               

               
Cow position:
               
chr22:12892725-12892962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
226, 77
               

               
Conread position:
               
1-249
               

               
Cow position:
               
chr22:16768897-16769152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
103, 62
               

               
Conread position:
               
1-249
               

               
Cow position:
               
chr22:26658897-26658648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
104, 77
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr22:13274313-13274056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
106, 66
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr22:23861305-23861557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
159, 66
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr22:34750519-34750273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
199, 77
               

               
Conread position:
               
2-114
               

               
Cow position:
               
chr22:40048404-40048293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
2-250
               

               
Cow position:
               
chr22:6936055-6935826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
83, 42
               

               
Conread position:
               
2-250
               

               
Cow position:
               
chr22:27223974-27223745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
222, 76
               

               
Conread position:
               
3-127
               

               
Cow position:
               
chr22:40370299-40370176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
82, 7
               

               
Conread position:
               
4-119
               

               
Cow position:
               
chr22:27329045-27329158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
6-126
               

               
Cow position:
               
chr22:6360651-6360770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
6-246
               

               
Cow position:
               
chr22:1590856-1590612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
98, 19
               

               
Conread position:
               
6-248
               

               
Cow position:
               
chr22:46610944-46611188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
96, 72
               

               
Conread position:
               
8-96
               

               
Cow position:
               
chr22:12946330-12946418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
89
               

               
Alignm identity:
               
76
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
14-129
               

               
Cow position:
               
chr22:9278732-9278618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
103, 64
               

               
Conread position:
               
14-236
               

               
Cow position:
               
chr22:35902865-35903068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
11, 70
               

               
Conread position:
               
18-250
               

               
Cow position:
               
chr22:6497673-6497899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
209, 54
               

               
Conread position:
               
34-248
               

               
Cow position:
               
chr22:27791275-27791075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
128, 58
               

               
Conread position:
               
37-244
               

               
Cow position:
               
chr22:23854787-23854582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
190, 41
               

               
Conread position:
               
62-250
               

               
Cow position:
               
chr22:9286638-9286821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
165, 34
               

               
Conread position:
               
1-108
               

               
Cow position:
               
chr23:7937693-7937798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
1-108
               

               
Cow position:
               
chr23:26003911-26003805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-113
               

               
Cow position:
               
chr23:28206458-28206347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-114
               

               
Cow position:
               
chr23:39793301-39793188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
14, 49
               

               
Conread position:
               
1-116
               

               
Cow position:
               
chr23:11129081-11128967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-116
               

               
Cow position:
               
chr23:14895957-14896070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-124
               

               
Cow position:
               
chr23:34611941-34612059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
1-124
               

               
Cow position:
               
chr23:39806720-39806599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
14, 78
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr23:11209856-11209731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr23:26795057-26795182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-130
               

               
Cow position:
               
chr23:1721138-1721268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
63, 17
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr23:29242793-29242565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr23:29742232-29741997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
226, 127
               

               
Conread position:
               
1-255
               

               
Cow position:
               
chr23:36199140-36198882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
169, 77
               

               
Conread position:
               
2-100
               

               
Cow position:
               
chr23:16583063-16583160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
99
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
2-113
               

               
Cow position:
               
chr23:22804571-22804458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
2-114
               

               
Cow position:
               
chr23:16073076-16072965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
2-142
               

               
Cow position:
               
chr23:11933084-11932942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
41, 83
               

               
Conread position:
               
3-114
               

               
Cow position:
               
chr23:12896756-12896867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
4-114
               

               
Cow position:
               
chr23:40778106-40777998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
7-122
               

               
Cow position:
               
chr23:38414118-38414230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
7-236
               

               
Cow position:
               
chr23:9392806-9393019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
220, 51
               

               
Conread position:
               
19-250
               

               
Cow position:
               
chr23:9652635-9652872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
25, 68
               

               
Conread position:
               
25-244
               

               
Cow position:
               
chr23:17404673-17404460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
74, 53
               

               
Conread position:
               
1-99
               

               
Cow position:
               
chr24:29673340-29673243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
99
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-106
               

               
Cow position:
               
chr24:33238727-33238832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-107
               

               
Cow position:
               
chr24:11876704-11876599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-109
               

               
Cow position:
               
chr24:30229289-30229180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
1-114
               

               
Cow position:
               
chr24:17311388-17311500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-114
               

               
Cow position:
               
chr24:20024428-20024316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-114
               

               
Cow position:
               
chr24:27844699-27844811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-114
               

               
Cow position:
               
chr24:32054493-32054380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-116
               

               
Cow position:
               
chr24:15508715-15508827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
1-124
               

               
Cow position:
               
chr24:27941189-27941309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
1-126
               

               
Cow position:
               
chr24:31816406-31816282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr24:6677322-6677198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr24:32758943-32759074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
56, 89
               
1-249UCSC Genome Browser

               
Conread position:
               

               

               
Cow position:
               
chr24:43200452-43200699 (view  custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
49, 84
               
1-250UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr24:27608277-27608523 (view  custom track)

               
               
               
Alignm length:
254

               
               
               
Alignm identity:
172

               
               
               
Alignm E-value:
4e-25

               
               
               
Alignm gaps (pig, cow):
57, 53
1-250UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr24:40184444-40184196 (view  custom track)

               
               
               
Alignm length:
253

               
               
               
Alignm identity:
188

               
               
               
Alignm E-value:
2.99878e-43

               
               
               
Alignm gaps (pig, cow):
77, 58

               
               
               Conread position:2-250
               
               
               Cow position:chr24:18331557-18331307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):52, 83

               
               
               Conread position:15-147
               
               
               Cow position:chr24:44702784-44702654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):65, 51

               
               
               Conread position:24-221
               
               
               Cow position:chr24:16268306-16268502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):77, 54

               
               
               Conread position:38-250
               
               
               Cow position:chr24:24457745-24457943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):189, 46

               
               
               Conread position:1-114
               
               
               Cow position:chr25:30319606-30319718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:90
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-116
               
               
               Cow position:chr25:8961306-8961192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-121
               
               
               Cow position:chr25:17712377-17712258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:94
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-123
               
               
               Cow position:chr25:16691359-16691239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-126
               
               
               Cow position:chr25:37594257-37594133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:1-126
               
               
               Cow position:chr25:40321450-40321573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-143
               
               
               Cow position:chr25:24405893-24406038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):92, 77

               
               
               Conread position:1-248
               
               
               Cow position:chr25:12081474-12081712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):79, 24

               
               
               Conread position:1-250
               
               
               Cow position:chr25:18013242-18012997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):163, 85

               
               
               Conread position:1-250
               
               
               Cow position:chr25:35612455-35612694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):69, 18

               
               
               Conread position:2-106
               
               
               Cow position:chr25:6891677-6891781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:86
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-143
               
               
               Cow position:chr25:18452970-18452826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):20, 65

               
               
               Conread position:3-114
               
               
               Cow position:chr25:22203849-22203959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:89
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:4-128
               
               
               Cow position:chr25:20101913-20101790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):38, 33

               
               
               Conread position:6-108
               
               
               Cow position:chr25:16064734-16064634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:85
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:6-114
               
               
               Cow position:chr25:8347347-8347240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:89
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:22-127
               
               
               Cow position:chr25:33978379-33978483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:86
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:1-102
               
               
               Cow position:chr26:35704248-35704147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:85
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-114
               
               
               Cow position:chr26:6322459-6322347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-149
               
               
               Cow position:chr26:5394524-5394376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):71, 43

               
               
               Conread position:1-250
               
               
               Cow position:chr26:19842451-19842191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):119, 218

               
               
               Conread position:2-122
               
               
               Cow position:chr26:14080582-14080459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:97
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:2-216
               
               
               Cow position:chr26:16921806-16921599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):23, 151

               
               
               Conread position:4-127
               
               
               Cow position:chr26:613812-613936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:97
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:5-203
               
               
               Cow position:chr26:25442031-25442229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):40, 80

               
               
               Conread position:6-245
               
               
               Cow position:chr26:22622840-22622599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):72, 147

               
               
               Conread position:32-250
               
               
               Cow position:chr26:17675899-17676107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):195, 52

               
               
               Conread position:36-250
               
               
               Cow position:chr26:2408881-2409082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):189, 48

               
               
               Conread position:160-299
               
               
               Cow position:chr26:17401514-17401370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):11, 128

               
               
               Conread position:1-106
               
               
               Cow position:chr27:18922562-18922665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:87
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-108
               
               
               Cow position:chr27:17472924-17473030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:88
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-112
               
               
               Cow position:chr27:26625236-26625346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:1-114
               
               
               Cow position:chr27:6500176-6500288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-114
               
               
               Cow position:chr27:6550562-6550674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-114
               
               
               Cow position:chr27:14902537-14902426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:90
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:1-114
               
               
               Cow position:chr27:22035262-22035150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:1-114
               
               
               Cow position:chr27:26398147-26398036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:92
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-116
               
               
               Cow position:chr27:27632498-27632384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-117
               
               
               Cow position:chr27:26935808-26935692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:92
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-127
               
               
               Cow position:chr27:31217052-31216927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:96
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:1-139
               
               
               Cow position:chr27:19577786-19577922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):50, 57

               
               
               Conread position:1-205
               
               
               Cow position:chr27:25998816-25999017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-225
               
               
               Cow position:chr27:9159310-9159528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):52, 25

               
               
               Conread position:1-272
               
               
               Cow position:chr27:4390143-4389874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):226, 83

               
               
               Conread position:2-157
               
               
               Cow position:chr27:19543799-19543643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):8, 78

               
               
               Conread position:2-216
               
               
               Cow position:chr27:12596871-12597083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):14, 38

               
               
               Conread position:5-249
               
               
               Cow position:chr27:8048621-8048373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):118, 49

               
               
               Conread position:6-116
               
               
               Cow position:chr27:30765148-30765257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:90
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:6-245
               
               
               Cow position:chr27:25676343-25676576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):61, 103

               
               
               Conread position:12-147
               
               
               Cow position:chr27:6523168-6523302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:38-249
               
               
               Cow position:chr27:7648417-7648220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):189, 43

               
               
               Conread position:1-98
               
               
               Cow position:chr28:1537557-1537459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:82
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-106
               
               
               Cow position:chr28:16925360-16925464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:89
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-108
               
               
               Cow position:chr28:5837962-5837857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:88
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:1-114
               
               
               Cow position:chr28:3144041-3144151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-114
               
               
               Cow position:chr28:12619413-12619301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-118
               
               
               Cow position:chr28:23793452-23793566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:93
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:1-126
               
               
               Cow position:chr28:2862712-2862588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-126
               
               
               Cow position:chr28:5366280-5366406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):77, 65

               
               
               Conread position:1-126
               
               
               Cow position:chr28:13176828-13176952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-127
               
               
               Cow position:chr28:9740321-9740197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:97
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:1-204
               
               
               Cow position:chr28:28414519-28414326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:1-244
               
               
               Cow position:chr28:26719207-26718983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):223, 28

               
               
               Conread position:1-248
               
               
               Cow position:chr28:13865695-13865454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):226, 28

               
               
               Conread position:1-250
               
               
               Cow position:chr28:10172563-10172812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):164, 77

               
               
               Conread position:1-250
               
               
               Cow position:chr28:22081426-22081193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):226, 48

               
               
               Conread position:1-272
               
               
               Cow position:chr28:31415577-31415832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):226, 66

               
               
               Conread position:4-106
               
               
               Cow position:chr28:20124633-20124532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:87
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:4-247
               
               
               Cow position:chr28:28076560-28076813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):89, 74

               
               
               Conread position:1-100
               
               
               Cow position:chr29:26778728-26778630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:83
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-114
               
               
               Cow position:chr29:17264-17373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:92
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:1-114
               
               
               Cow position:chr29:15944413-15944301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:92
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-114
               
               
               Cow position:chr29:26130627-26130515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:93
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-116
               
               
               Cow position:chr29:5098918-5099032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:91
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-118
               
               
               Cow position:chr29:25088597-25088481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:93
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-124
               
               
               Cow position:chr29:22339369-22339491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:1-127
               
               
               Cow position:chr29:109553-109427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):112, 77

               
               
               Conread position:1-250
               
               
               Cow position:chr29:41076184-41076422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):226, 77

               
               
               Conread position:1-250
               
               
               Cow position:chr29:41530693-41530447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:182
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):223, 82

               
               
               Conread position:3-114
               
               
               Cow position:chr29:4328275-4328166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:90
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:4-247
               
               
               Cow position:chr29:32767680-32767933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):89, 74

               
               
               Conread position:6-250
               
               
               Cow position:chr29:2885612-2885850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):157, 62

               
               
               Conread position:7-250
               
               
               Cow position:chr29:43516843-43517083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):220, 70

               
               
               Conread position:8-248
               
               
               Cow position:chr29:12784118-12784360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):157, 67

               
               
               Conread position:8-250
               
               
               Cow position:chr29:12679991-12679764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):219, 75

               
               
               Conread position:16-126
               
               
               Cow position:chr29:1886847-1886957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:88
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:43-247
               
               
               Cow position:chr29:17300998-17300801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):184, 40

               
               
               Conread position:1-98
               
               
               Cow position:chr3:50099316-50099219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:82
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-100
               
               
               Cow position:chr3:57764045-57763947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:84
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-105
               
               
               Cow position:chr3:15661878-15661982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:86
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-106
               
               
               Cow position:chr3:30179905-30179800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:85
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-106
               
               
               Cow position:chr3:79292656-79292552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:86
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:1-108
               
               
               Cow position:chr3:37041249-37041145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:89
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:1-110
               
               
               Cow position:chr3:25691571-25691463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:88
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-112
               
               
               Cow position:chr3:22872230-22872340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:89
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-114
               
               
               Cow position:chr3:15954255-15954367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:90
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-114
               
               
               Cow position:chr3:18887403-18887289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:94
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):15, 79

               
               
               Conread position:1-114
               
               
               Cow position:chr3:42671142-42671031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-114
               
               
               Cow position:chr3:53112991-53112878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:90
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-114
               
               
               Cow position:chr3:72675909-72675797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:91
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-114
               
               
               Cow position:chr3:79592067-79592179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:92
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-114
               
               
               Cow position:chr3:80081996-80082107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:91
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:1-115
               
               
               Cow position:chr3:26920718-26920606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:1-116
               
               
               Cow position:chr3:29813065-29812952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-124
               
               
               Cow position:chr3:30701146-30701022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):28, 79

               
               
               Conread position:1-127
               
               
               Cow position:chr3:56548-56672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):25, 82

               
               
               Conread position:1-127
               
               
               Cow position:chr3:9641387-9641261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):18, 84

               
               
               Conread position:1-127
               
               
               Cow position:chr3:19006489-19006364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-127
               
               
               Cow position:chr3:23944917-23944794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:1-127
               
               
               Cow position:chr3:39970050-39970175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-127
               
               
               Cow position:chr3:55815166-55815041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-127
               
               
               Cow position:chr3:58540711-58540833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:1-127
               
               
               Cow position:chr3:71104663-71104540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:1-147
               
               
               Cow position:chr3:15158863-15158718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:1-205
               
               
               Cow position:chr3:23471646-23471844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:1-214
               
               
               Cow position:chr3:54740050-54740272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):122, 82

               
               
               Conread position:1-247
               
               
               Cow position:chr3:51609638-51609389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):153, 76

               
               
               Conread position:1-249
               
               
               Cow position:chr3:63203268-63203015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):39, 85

               
               
               Conread position:1-250
               
               
               Cow position:chr3:16886059-16886296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):226, 73

               
               
               Conread position:1-250
               
               
               Cow position:chr3:31119784-31120042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):117, 83

               
               
               Conread position:1-250
               
               
               Cow position:chr3:72018732-72018467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):101, 82

               
               
               Conread position:1-264
               
               
               Cow position:chr3:38691584-38691843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):79, 66

               
               
               Conread position:1-267
               
               
               Cow position:chr3:54050198-54050469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:201
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):165, 26

               
               
               Conread position:2-115
               
               
               Cow position:chr3:13329952-13330063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:2-117
               
               
               Cow position:chr3:70895867-70895753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:91
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:2-118
               
               
               Cow position:chr3:15228998-15229113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:2-127
               
               
               Cow position:chr3:19822145-19822271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):100, 82

               
               
               Conread position:2-127
               
               
               Cow position:chr3:65413456-65413578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-114
               
               
               Cow position:chr3:20129762-20129651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:88
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-114
               
               
               Cow position:chr3:31309535-31309644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:92
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:3-114
               
               
               Cow position:chr3:53572930-53573040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:89
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:3-120
               
               
               Cow position:chr3:27544509-27544625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:92
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:3-250
               
               
               Cow position:chr3:3283674-3283914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):230, 64

               
               
               Conread position:3-250
               
               
               Cow position:chr3:22221168-22220918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):90, 7

               
               
               Conread position:3-250
               
               
               Cow position:chr3:59333587-59333349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):128, 44

               
               
               Conread position:4-118
               
               
               Cow position:chr3:83815974-83816087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:4-125
               
               
               Cow position:chr3:77271448-77271569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:93
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:4-250
               
               
               Cow position:chr3:45744532-45744289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):218, 80

               
               
               Conread position:6-114
               
               
               Cow position:chr3:17695188-17695296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:87
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:6-115
               
               
               Cow position:chr3:14552695-14552587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:88
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:6-122
               
               
               Cow position:chr3:67744810-67744926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:94
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):39, 73

               
               
               Conread position:6-126
               
               
               Cow position:chr3:80581488-80581369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:6-127
               
               
               Cow position:chr3:5097021-5096900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:6-127
               
               
               Cow position:chr3:78946020-78946142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):67, 45

               
               
               Conread position:6-250
               
               
               Cow position:chr3:17895668-17895432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):158, 25

               
               
               Conread position:7-248
               
               
               Cow position:chr3:4031784-4031536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):122, 71

               
               
               Conread position:19-221
               
               
               Cow position:chr3:78894510-78894709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):162, 56

               
               
               Conread position:74-250
               
               
               Cow position:chr3:74878854-74879040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):72, 157

               
               
               Conread position:1-100
               
               
               Cow position:chr4:25806736-25806639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:86
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:1-100
               
               
               Cow position:chr4:53763280-53763379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:82
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-102
               
               
               Cow position:chr4:52177302-52177402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:84
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-106
               
               
               Cow position:chr4:54468457-54468562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:87
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-106
               
               
               Cow position:chr4:54667853-54667957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:86
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-107
               
               
               Cow position:chr4:23847213-23847318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:87
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-108
               
               
               Cow position:chr4:22072835-22072941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:89
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-108
               
               
               Cow position:chr4:37935443-37935549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:87
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-110
               
               
               Cow position:chr4:4321168-4321276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:88
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-112
               
               
               Cow position:chr4:39128369-39128257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:92
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):61, 79

               
               
               Conread position:1-113
               
               
               Cow position:chr4:62471906-62471795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-114
               
               
               Cow position:chr4:11872074-11872186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:92
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-114
               
               
               Cow position:chr4:41441403-41441291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:90
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-114
               
               
               Cow position:chr4:42673009-42672897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:90
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-114
               
               
               Cow position:chr4:51903440-51903328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:91
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-116
               
               
               Cow position:chr4:20139682-20139795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-118
               
               
               Cow position:chr4:23526535-23526419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:93
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-122
               
               
               Cow position:chr4:28772229-28772349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:99
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-122
               
               
               Cow position:chr4:51784019-51783898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:98
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-126
               
               
               Cow position:chr4:27529951-27529827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:101
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-127
               
               
               Cow position:chr4:4300377-4300252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:1-127
               
               
               Cow position:chr4:5924685-5924810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:1-127
               
               
               Cow position:chr4:22259582-22259705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):94, 59

               
               
               Conread position:1-127
               
               
               Cow position:chr4:63349636-63349763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):78, 47

               
               
               Conread position:1-138
               
               
               Cow position:chr4:58687599-58687735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-204
               
               
               Cow position:chr4:46591498-46591302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):15, 75

               
               
               Conread position:1-216
               
               
               Cow position:chr4:34630737-34630533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:1-225
               
               
               Cow position:chr4:44612840-44612608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):139, 82

               
               
               Conread position:1-248
               
               
               Cow position:chr4:24686047-24686300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):92, 76

               
               
               Conread position:1-249
               
               
               Cow position:chr4:3251698-3251967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):103, 83

               
               
               Conread position:1-249
               
               
               Cow position:chr4:20299108-20298869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):219, 103

               
               
               Conread position:1-249
               
               
               Cow position:chr4:51122894-51122637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):101, 26

               
               
               Conread position:1-250
               
               
               Cow position:chr4:36755588-36755357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):97, 77

               
               
               Conread position:1-250
               
               
               Cow position:chr4:44072932-44073178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 83

               
               
               Conread position:1-250
               
               
               Cow position:chr4:46083055-46083313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):47, 80

               
               
               Conread position:1-251
               
               
               Cow position:chr4:58948073-58948319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):27, 50

               
               
               Conread position:1-264
               
               
               Cow position:chr4:61624757-61625007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):226, 36

               
               
               Conread position:1-315
               
               
               Cow position:chr4:9912566-9912242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):89, 50

               
               
               Conread position:2-113
               
               
               Cow position:chr4:38999263-38999154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:90
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:2-127
               
               
               Cow position:chr4:46456213-46456334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:3-147
               
               
               Cow position:chr4:48172946-48172806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:3-250
               
               
               Cow position:chr4:15462438-15462673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):224, 51

               
               
               Conread position:3-250
               
               
               Cow position:chr4:27287270-27287512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):224, 81

               
               
               Conread position:4-127
               
               
               Cow position:chr4:55523208-55523087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:6-114
               
               
               Cow position:chr4:2893857-2893750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:6-127
               
               
               Cow position:chr4:19438291-19438171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:98
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:6-127
               
               
               Cow position:chr4:59105978-59106098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:6-147
               
               
               Cow position:chr4:19542629-19542487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):96, 72

               
               
               Conread position:8-248
               
               
               Cow position:chr4:11389710-11389943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):218, 59

               
               
               Conread position:14-250
               
               
               Cow position:chr4:51739878-51740106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):212, 70

               
               
               Conread position:14-250
               
               
               Cow position:chr4:67408361-67408127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):161, 25

               
               
               Conread position:103-250
               
               
               Cow position:chr4:59106108-59106256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:1-99
               
               
               Cow position:chr5:32153445-32153542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:84
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-105
               
               
               Cow position:chr5:45225954-45226056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:87
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:1-106
               
               
               Cow position:chr5:27403372-27403477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):33, 78

               
               
               Conread position:1-106
               
               
               Cow position:chr5:33661725-33661621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:87
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-106
               
               
               Cow position:chr5:45845825-45845928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:87
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-106
               
               
               Cow position:chr5:63992292-63992397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:85
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-110
               
               
               Cow position:chr5:1766473-1766582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:89
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-113
               
               
               Cow position:chr5:19751723-19751612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-113
               
               
               Cow position:chr5:58793744-58793855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-114
               
               
               Cow position:chr5:21525035-21524923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:90
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-114
               
               
               Cow position:chr5:38853230-38853118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:90
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-114
               
               
               Cow position:chr5:43474718-43474606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:93
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-114
               
               
               Cow position:chr5:61600283-61600171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:91
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-115
               
               
               Cow position:chr5:59443381-59443493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:1-116
               
               
               Cow position:chr5:37646679-37646795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:1-120
               
               
               Cow position:chr5:49685409-49685528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):24, 78

               
               
               Conread position:1-122
               
               
               Cow position:chr5:2309693-2309813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:94
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:1-124
               
               
               Cow position:chr5:37645944-37645823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:99
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-127
               
               
               Cow position:chr5:2851184-2851060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:100
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-127
               
               
               Cow position:chr5:4032124-4032243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:1-127
               
               
               Cow position:chr5:20454648-20454523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:1-127
               
               
               Cow position:chr5:26541164-26541042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:1-127
               
               
               Cow position:chr5:32963759-32963883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:1-127
               
               
               Cow position:chr5:66297109-66296984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-242
               
               
               Cow position:chr5:32339105-32339339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-248
               
               
               Cow position:chr5:28230028-28229796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):226, 83

               
               
               Conread position:1-249
               
               
               Cow position:chr5:63388665-63388416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):98, 77

               
               
               Conread position:1-250
               
               
               Cow position:chr5:37714031-37714266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):27, 86

               
               
               Conread position:1-250
               
               
               Cow position:chr5:43992191-43991959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):197, 42

               
               
               Conread position:1-250
               
               
               Cow position:chr5:51360817-51360565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):101, 164

               
               
               Conread position:1-250
               
               
               Cow position:chr5:57890370-57890138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):226, 77

               
               
               Conread position:2-108
               
               
               Cow position:chr5:72150123-72150015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:2-120
               
               
               Cow position:chr5:54350489-54350608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:98
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):8, 78

               
               
               Conread position:2-127
               
               
               Cow position:chr5:37814492-37814369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:102
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:2-142
               
               
               Cow position:chr5:11668309-11668447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:3-250
               
               
               Cow position:chr5:58144735-58144969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):92, 114

               
               
               Conread position:4-115
               
               
               Cow position:chr5:50729363-50729253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:90
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:4-127
               
               
               Cow position:chr5:24642854-24642976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:100
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:4-250
               
               
               Cow position:chr5:52438014-52437779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):220, 64

               
               
               Conread position:5-128
               
               
               Cow position:chr5:10789811-10789932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:96
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:7-250
               
               
               Cow position:chr5:27306183-27305937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:171
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):93, 71

               
               
               Conread position:12-126
               
               
               Cow position:chr5:34923251-34923360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:93
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-132
               
               
               Cow position:chr5:20691607-20691718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:35-250
               
               
               Cow position:chr5:25495501-25495718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):132, 49

               
               
               Conread position:35-251
               
               
               Cow position:chr5:34300763-34300557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):191, 67

               
               
               Conread position:40-223
               
               
               Cow position:chr5:43325876-43325690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):69, 46

               
               
               Conread position:41-180
               
               
               Cow position:chr5:60960153-60960017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:1-100
               
               
               Cow position:chr6:21110855-21110756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:86
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-100
               
               
               Cow position:chr6:59015676-59015775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:83
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-106
               
               
               Cow position:chr6:389055-388952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:87
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:1-106
               
               
               Cow position:chr6:2607498-2607394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:86
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-108
               
               
               Cow position:chr6:9008726-9008832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:91
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-112
               
               
               Cow position:chr6:12500745-12500635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:90
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-114
               
               
               Cow position:chr6:10332211-10332323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:90
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-114
               
               
               Cow position:chr6:17067935-17068046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-114
               
               
               Cow position:chr6:32024453-32024565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:92
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-114
               
               
               Cow position:chr6:50746865-50746754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:91
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:1-114
               
               
               Cow position:chr6:56502194-56502082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:90
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-114
               
               
               Cow position:chr6:65676142-65676030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:91
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-114
               
               
               Cow position:chr6:65711712-65711600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:91
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-114
               
               
               Cow position:chr6:68049320-68049209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-115
               
               
               Cow position:chr6:9375489-9375602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-115
               
               
               Cow position:chr6:18988101-18987989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:91
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-120
               
               
               Cow position:chr6:10106111-10106229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:95
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-120
               
               
               Cow position:chr6:66433833-66433715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:94
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:1-122
               
               
               Cow position:chr6:6117664-6117784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:99
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-124
               
               
               Cow position:chr6:38441067-38440945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:100
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:1-126
               
               
               Cow position:chr6:38218557-38218433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:100
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-127
               
               
               Cow position:chr6:6701381-6701508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:1-127
               
               
               Cow position:chr6:56041737-56041862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-248
               
               
               Cow position:chr6:14949596-14949827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):226, 77

               
               
               Conread position:1-249
               
               
               Cow position:chr6:53651926-53651674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):174, 103

               
               
               Conread position:1-250
               
               
               Cow position:chr6:9452888-9453132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):226, 74

               
               
               Conread position:1-250
               
               
               Cow position:chr6:65846562-65846808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:186
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):224, 76

               
               
               Conread position:1-267
               
               
               Cow position:chr6:16220142-16220404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):131, 74

               
               
               Conread position:2-114
               
               
               Cow position:chr6:16411079-16410969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:91
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:2-117
               
               
               Cow position:chr6:5095664-5095780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):8, 78

               
               
               Conread position:2-125
               
               
               Cow position:chr6:28977145-28977269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:2-127
               
               
               Cow position:chr6:49685469-49685345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:2-142
               
               
               Cow position:chr6:15300929-15301072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):8, 80

               
               
               Conread position:3-127
               
               
               Cow position:chr6:52025771-52025893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:3-250
               
               
               Cow position:chr6:16288536-16288775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):223, 75

               
               
               Conread position:3-250
               
               
               Cow position:chr6:31048623-31048868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):151, 75

               
               
               Conread position:4-110
               
               
               Cow position:chr6:36470681-36470786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):88, 80

               
               
               Conread position:4-127
               
               
               Cow position:chr6:14201580-14201458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:96
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:4-127
               
               
               Cow position:chr6:67304683-67304562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:4-238
               
               
               Cow position:chr6:17736510-17736288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):223, 98

               
               
               Conread position:6-115
               
               
               Cow position:chr6:7103356-7103463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:6-127
               
               
               Cow position:chr6:57384400-57384280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:94
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:6-233
               
               
               Cow position:chr6:21869765-21869982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):221, 72

               
               
               Conread position:8-119
               
               
               Cow position:chr6:54490862-54490972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:89
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:16-248
               
               
               Cow position:chr6:43788610-43788834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):148, 68

               
               
               Conread position:33-250
               
               
               Cow position:chr6:66874215-66874009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):194, 51

               
               
               Conread position:44-145
               
               
               Cow position:chr6:6038183-6038286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:86
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:1-102
               
               
               Cow position:chr7:41293861-41293960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:85
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-105
               
               
               Cow position:chr7:12408352-12408456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:87
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-108
               
               
               Cow position:chr7:8813039-8813145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:90
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-108
               
               
               Cow position:chr7:28563495-28563601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:87
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:1-110
               
               
               Cow position:chr7:26631924-26632032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:88
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:1-111
               
               
               Cow position:chr7:14005758-14005649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-114
               
               
               Cow position:chr7:6058018-6057905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:89
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-114
               
               
               Cow position:chr7:15608297-15608186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-114
               
               
               Cow position:chr7:23646490-23646378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:92
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-114
               
               
               Cow position:chr7:28324522-28324410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:91
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-114
               
               
               Cow position:chr7:32824366-32824477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-114
               
               
               Cow position:chr7:33068413-33068525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:91
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:1-114
               
               
               Cow position:chr7:34428448-34428336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:92
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:1-114
               
               
               Cow position:chr7:42223059-42223171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:91
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-114
               
               
               Cow position:chr7:64269099-64269210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:92
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:1-115
               
               
               Cow position:chr7:5242005-5241893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:91
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-125
               
               
               Cow position:chr7:17967234-17967354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:1-126
               
               
               Cow position:chr7:38060546-38060670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:1-126
               
               
               Cow position:chr7:41445248-41445125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-126
               
               
               Cow position:chr7:41872204-41872327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:102
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-127
               
               
               Cow position:chr7:1350424-1350547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:1-127
               
               
               Cow position:chr7:12212719-12212844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-127
               
               
               Cow position:chr7:40621822-40621698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-127
               
               
               Cow position:chr7:42244806-42244934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:1-127
               
               
               Cow position:chr7:50095267-50095143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:1-127
               
               
               Cow position:chr7:56838611-56838735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:1-143
               
               
               Cow position:chr7:20289-20147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-146
               
               
               Cow position:chr7:22730090-22729948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:1-231
               
               
               Cow position:chr7:23075449-23075667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:1-245
               
               
               Cow position:chr7:25867618-25867853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:187
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):225, 77

               
               
               Conread position:1-248
               
               
               Cow position:chr7:25015235-25015486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):163, 68

               
               
               Conread position:1-248
               
               
               Cow position:chr7:25023573-25023816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):162, 68

               
               
               Conread position:1-249
               
               
               Cow position:chr7:25263258-25263009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):79, 163

               
               
               Conread position:1-250
               
               
               Cow position:chr7:24718648-24718890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:188
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):204, 57

               
               
               Conread position:1-250
               
               
               Cow position:chr7:34569087-34568850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):226, 77

               
               
               Conread position:1-250
               
               
               Cow position:chr7:37455210-37454973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):226, 127

               
               
               Conread position:1-250
               
               
               Cow position:chr7:41727825-41727577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):226, 71

               
               
               Conread position:1-250
               
               
               Cow position:chr7:48695685-48695458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):84, 102

               
               
               Conread position:1-255
               
               
               Cow position:chr7:52130881-52131126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):226, 83

               
               
               Conread position:1-269
               
               
               Cow position:chr7:63378725-63378986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):58, 81

               
               
               Conread position:2-120
               
               
               Cow position:chr7:64573174-64573291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:2-127
               
               
               Cow position:chr7:40405737-40405614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:97
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:2-245
               
               
               Cow position:chr7:32260387-32260626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 9

               
               
               Conread position:6-114
               
               
               Cow position:chr7:12659115-12659223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:6-122
               
               
               Cow position:chr7:33719934-33719820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:6-126
               
               
               Cow position:chr7:46928867-46928744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:102
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:6-126
               
               
               Cow position:chr7:52383091-52383209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:7-114
               
               
               Cow position:chr7:26888083-26888189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:87
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:8-194
               
               
               Cow position:chr7:16022182-16021999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):96, 70

               
               
               Conread position:8-249
               
               
               Cow position:chr7:58867490-58867262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):212, 70

               
               
               Conread position:12-126
               
               
               Cow position:chr7:40263776-40263890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:36-250
               
               
               Cow position:chr7:20880033-20879803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):68, 42

               
               
               Conread position:40-250
               
               
               Cow position:chr7:60574932-60574710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:1-100
               
               
               Cow position:chr8:41627265-41627363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:85
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-105
               
               
               Cow position:chr8:3891570-3891673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:87
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-106
               
               
               Cow position:chr8:19642326-19642222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:87
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-106
               
               
               Cow position:chr8:29262639-29262534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:86
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-106
               
               
               Cow position:chr8:46799447-46799551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:86
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-106
               
               
               Cow position:chr8:53485562-53485458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:87
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-108
               
               
               Cow position:chr8:47665050-47665157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:88
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-110
               
               
               Cow position:chr8:11606190-11606082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:88
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-110
               
               
               Cow position:chr8:33814799-33814690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:88
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-112
               
               
               Cow position:chr8:35211299-35211409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:93
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:1-114
               
               
               Cow position:chr8:21826894-21827004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:91
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:1-114
               
               
               Cow position:chr8:21961104-21960994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:95
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):62, 68

               
               
               Conread position:1-114
               
               
               Cow position:chr8:36059696-36059584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:92
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-114
               
               
               Cow position:chr8:38358281-38358169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:90
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-114
               
               
               Cow position:chr8:58183453-58183565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:91
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-115
               
               
               Cow position:chr8:33585017-33584901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:93
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:1-116
               
               
               Cow position:chr8:10400163-10400049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:91
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-118
               
               
               Cow position:chr8:4940454-4940569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-118
               
               
               Cow position:chr8:38596356-38596471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-119
               
               
               Cow position:chr8:48775671-48775554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-120
               
               
               Cow position:chr8:39039883-39039767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-120
               
               
               Cow position:chr8:49687368-49687486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:97
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-120
               
               
               Cow position:chr8:55926054-55925936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:94
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-124
               
               
               Cow position:chr8:53642567-53642689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:95
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-127
               
               
               Cow position:chr8:48955772-48955647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-142
               
               
               Cow position:chr8:53451368-53451228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-144
               
               
               Cow position:chr8:10263311-10263449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:1-235
               
               
               Cow position:chr8:24867890-24868107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):226, 76

               
               
               Conread position:1-250
               
               
               Cow position:chr8:6724484-6724738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):151, 0

               
               
               Conread position:1-250
               
               
               Cow position:chr8:16093137-16092901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):78, 128

               
               
               Conread position:1-250
               
               
               Cow position:chr8:55323536-55323302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):226, 77

               
               
               Conread position:1-250
               
               
               Cow position:chr8:58346664-58346438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):226, 83

               
               
               Conread position:1-250
               
               
               Cow position:chr8:58385523-58385287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):226, 43

               
               
               Conread position:1-259
               
               
               Cow position:chr8:44437624-44437376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):226, 127

               
               
               Conread position:2-222
               
               
               Cow position:chr8:32719833-32719617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):162, 66

               
               
               Conread position:2-231
               
               
               Cow position:chr8:9288104-9287886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):225, 82

               
               
               Conread position:3-106
               
               
               Cow position:chr8:10942881-10942983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:86
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:3-250
               
               
               Cow position:chr8:42794459-42794698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):224, 66

               
               
               Conread position:8-114
               
               
               Cow position:chr8:24513289-24513394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:33-250
               
               
               Cow position:chr8:16053364-16053149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):64, 36

               
               
               Conread position:1-102
               
               
               Cow position:chr9:36844016-36844115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:85
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-106
               
               
               Cow position:chr9:54997839-54997735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:86
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-108
               
               
               Cow position:chr9:22361199-22361304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:88
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:1-112
               
               
               Cow position:chr9:20738886-20738996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:89
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:1-114
               
               
               Cow position:chr9:5226980-5226869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-114
               
               
               Cow position:chr9:7409966-7410078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:91
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-114
               
               
               Cow position:chr9:15805737-15805625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:91
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-114
               
               
               Cow position:chr9:42498013-42498125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:95
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-114
               
               
               Cow position:chr9:49982913-49982801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:90
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-114
               
               
               Cow position:chr9:54528699-54528811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:91
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-115
               
               
               Cow position:chr9:5763446-5763333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-115
               
               
               Cow position:chr9:36354098-36353985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-120
               
               
               Cow position:chr9:35101051-35101169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:95
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-122
               
               
               Cow position:chr9:49689120-49689241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:98
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-132
               
               
               Cow position:chr9:49403937-49404068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):49, 18

               
               
               Conread position:1-135
               
               
               Cow position:chr9:47875763-47875631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:1-246
               
               
               Cow position:chr9:10144288-10144050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):158, 77

               
               
               Conread position:1-250
               
               
               Cow position:chr9:5399903-5400151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):107, 68

               
               
               Conread position:1-250
               
               
               Cow position:chr9:25546817-25547061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):19, 73

               
               
               Conread position:2-114
               
               
               Cow position:chr9:22318521-22318634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:92
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):8, 77

               
               
               Conread position:2-214
               
               
               Cow position:chr9:49764841-49765060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):148, 76

               
               
               Conread position:2-242
               
               
               Cow position:chr9:9405872-9405636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):9, 84

               
               
               Conread position:2-246
               
               
               Cow position:chr9:41782080-41782320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):107, 83

               
               
               Conread position:3-142
               
               
               Cow position:chr9:36999875-36999737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:4-114
               
               
               Cow position:chr9:13994375-13994484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:6-110
               
               
               Cow position:chr9:56453521-56453624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:86
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:6-114
               
               
               Cow position:chr9:31077489-31077382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:6-127
               
               
               Cow position:chr9:26278984-26278868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:6-127
               
               
               Cow position:chr9:58673931-58674050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:102
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:6-227
               
               
               Cow position:chr9:52578344-52578133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:6-250
               
               
               Cow position:chr9:26310747-26310984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):221, 72

               
               
               Conread position:7-111
               
               
               Cow position:chr9:17740754-17740650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:85
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:15-250
               
               
               Cow position:chr9:20579422-20579207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):212, 54

               
               
               Conread position:155-250
               
               
               Cow position:chr9:5455585-5455681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:84
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):9, 13

               
               
               Conread position:1-100
               
               
               Cow position:chrX:35542763-35542665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:83
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-100
               
               
               Cow position:chrX:42381228-42381326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:83
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-102
               
               
               Cow position:chrX:21665722-21665821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:86
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:1-105
               
               
               Cow position:chrX:42855280-42855177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:86
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-106
               
               
               Cow position:chrX:41743784-41743681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:86
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-106
               
               
               Cow position:chrX:42339064-42339168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:87
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-112
               
               
               Cow position:chrX:40647849-40647740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-113
               
               
               Cow position:chrX:48675949-48675838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:90
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-114
               
               
               Cow position:chrX:7718726-7718613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:89
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-114
               
               
               Cow position:chrX:26440908-26441020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:90
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-114
               
               
               Cow position:chrX:27446560-27446448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:90
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-114
               
               
               Cow position:chrX:43527375-43527263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:90
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:1-118
               
               
               Cow position:chrX:12249675-12249561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:1-122
               
               
               Cow position:chrX:619136-619256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:102
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-122
               
               
               Cow position:chrX:27394142-27394262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:1-122
               
               
               Cow position:chrX:31745174-31745295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:95
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):15, 78

               
               
               Conread position:1-122
               
               
               Cow position:chrX:33855361-33855481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:97
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-123
               
               
               Cow position:chrX:32623454-32623334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-124
               
               
               Cow position:chrX:26625805-26625927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:102
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-126
               
               
               Cow position:chrX:4043979-4044102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:1-126
               
               
               Cow position:chrX:47248913-47249040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:1-127
               
               
               Cow position:chrX:2029261-2029137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-127
               
               
               Cow position:chrX:6639997-6639871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-127
               
               
               Cow position:chrX:9855172-9855047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:1-127
               
               
               Cow position:chrX:21672423-21672298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-127
               
               
               Cow position:chrX:23514143-23514271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):32, 61

               
               
               Conread position:1-127
               
               
               Cow position:chrX:34543658-34543534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:1-127
               
               
               Cow position:chrX:36975821-36975695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):107, 74

               
               
               Conread position:1-127
               
               
               Cow position:chrX:39558475-39558602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:1-127
               
               
               Cow position:chrX:41884546-41884671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-127
               
               
               Cow position:chrX:42492643-42492763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-127
               
               
               Cow position:chrX:47243406-47243532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):18, 84

               
               
               Conread position:1-128
               
               
               Cow position:chrX:37906836-37906709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:98
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):75, 89

               
               
               Conread position:1-128
               
               
               Cow position:chrX:41403844-41403721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-128
               
               
               Cow position:chrX:41410392-41410269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-146
               
               
               Cow position:chrX:22624352-22624209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:1-147
               
               
               Cow position:chrX:48578287-48578142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:1-228
               
               
               Cow position:chrX:46984625-46984843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):77, 131

               
               
               Conread position:1-249
               
               
               Cow position:chrX:16416378-16416136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):226, 65

               
               
               Conread position:1-250
               
               
               Cow position:chrX:6203427-6203178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):166, 83

               
               
               Conread position:1-250
               
               
               Cow position:chrX:20168078-20167822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:191
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):25, 79

               
               
               Conread position:1-250
               
               
               Cow position:chrX:33493646-33493400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):163, 77

               
               
               Conread position:1-250
               
               
               Cow position:chrX:33519489-33519247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 77

               
               
               Conread position:1-250
               
               
               Cow position:chrX:38549320-38549080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):205, 83

               
               
               Conread position:1-250
               
               
               Cow position:chrX:44961619-44961381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):226, 83

               
               
               Conread position:1-250
               
               
               Cow position:chrX:46044916-46044687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):226, 83

               
               
               Conread position:1-294
               
               
               Cow position:chrX:2206672-2206956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):221, 77

               
               
               Conread position:2-127
               
               
               Cow position:chrX:1514530-1514657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):88, 76

               
               
               Conread position:2-250
               
               
               Cow position:chrX:7425336-7425098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):95, 75

               
               
               Conread position:2-273
               
               
               Cow position:chrX:23970261-23970004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):8, 78

               
               
               Conread position:3-114
               
               
               Cow position:chrX:32020252-32020362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:89
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:3-114
               
               
               Cow position:chrX:33020355-33020246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:3-114
               
               
               Cow position:chrX:39555946-39556057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):13, 76

               
               
               Conread position:4-106
               
               
               Cow position:chrX:31949062-31949163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:86
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:4-127
               
               
               Cow position:chrX:6277564-6277685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:95
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:4-242
               
               
               Cow position:chrX:40789073-40788836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):100, 74

               
               
               Conread position:4-250
               
               
               Cow position:chrX:42499160-42499400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):203, 74

               
               
               Conread position:5-117
               
               
               Cow position:chrX:22812928-22812819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:5-127
               
               
               Cow position:chrX:38935149-38935028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:6-248
               
               
               Cow position:chrX:27680268-27680032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):221, 69

               
               
               Conread position:8-114
               
               
               Cow position:chrX:17497961-17497856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:87
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:12-114
               
               
               Cow position:chrX:32870926-32871026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:87
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:14-116
               
               
               Cow position:chrX:35413491-35413390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:85
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:33-250
               
               
               Cow position:chrX:6262542-6262763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):45, 96

               
               
               Conread position:51-250
               
               
               Cow position:chrX:45098641-45098443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):172, 114

               
               
               Conread position:72-250
               
               
               Cow position:chrX:10394486-10394311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):155, 13

               
               
               Conread position:169-287
               
               
               Cow position:chrX:10412236-10412356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):58, 0